Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/python-pauvre/python-pauvre_0.2.2-2_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/python-pauvre-0.2.2-27mi582lt/python-pauvre_0.2.2-2_all.buildinfo Get source package info: python-pauvre=0.2.2-2 Source URL: http://snapshot.notset.fr/mr/package/python-pauvre/0.2.2-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-3 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-6 binutils=2.34-8 binutils-common=2.34-8 binutils-x86-64-linux-gnu=2.34-8 blt=2.5.3+dfsg-4+b1 bsdextrautils=2.35.2-7 bsdutils=1:2.35.2-6 build-essential=12.8 bzip2=1.0.8-3 coreutils=8.32-2 cpp=4:9.2.1-3.1 cpp-9=9.3.0-14 dash=0.5.10.2-7 debconf=1.5.74 debhelper=13.2 debianutils=4.11 dh-autoreconf=19 dh-python=4.20200315 dh-strip-nondeterminism=1.8.1-2 diffutils=1:3.7-3 dpkg=1.20.3 dpkg-dev=1.20.3 dwz=0.13-5 file=1:5.38-5 findutils=4.7.0-1 fontconfig-config=2.13.1-4.2 fonts-lyx=2.3.5.2-1 g++=4:9.2.1-3.1 g++-9=9.3.0-14 gcc=4:9.2.1-3.1 gcc-10-base=10.1.0-4 gcc-9=9.3.0-14 gcc-9-base=9.3.0-14 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.4-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.58 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libasan5=9.3.0-14 libatomic1=10.1.0-4 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3 libaudit1=1:2.8.5-3+b1 libbinutils=2.34-8 libblas3=3.9.0-2 libblkid1=2.35.2-6 libbrotli1=1.0.7-6.1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-3 libc-bin=2.30-8 libc-dev-bin=2.30-8 libc6=2.30-8 libc6-dev=2.30-8 libcap-ng0=0.7.9-2.2 libcc1-0=10.1.0-4 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.16-1 libcrypt1=1:4.4.16-1 libctf-nobfd0=2.34-8 libctf0=2.34-8 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.252 libdebhelper-perl=13.2 libdpkg-perl=1.20.3 libelf1=0.176-1.1 libexpat1=2.2.9-1 libffi7=3.3-4 libfile-stripnondeterminism-perl=1.8.1-2 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.2+dfsg-2 libgcc-9-dev=9.3.0-14 libgcc-s1=10.1.0-4 libgcrypt20=1.8.5-5 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libgfortran5=10.1.0-4 libglib2.0-0=2.64.4-1 libgmp10=2:6.2.0+dfsg-6 libgomp1=10.1.0-4 libgpg-error0=1.38-2 libicu67=67.1-2 libimagequant0=2.12.2-1.1 libisl22=0.22.1-1 libitm1=10.1.0-4 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.0.5-1 libjs-jquery=3.5.1+dfsg-4 libjs-jquery-ui=1.12.1+dfsg-5 liblapack3=3.9.0-2 liblbfgsb0=3.0+dfsg.3-8 liblcms2-2=2.9-4+b1 liblsan0=10.1.0-4 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-5 libmagic1=1:5.38-5 libmount1=2.35.2-7 libmpc3=1.1.0-1 libmpdec2=2.4.2-3 libmpfr6=4.0.2-1 libncurses6=6.2-1 libncursesw6=6.2-1 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libperl5.30=5.30.3-4 libpipeline1=1.5.2-2 libpng16-16=1.6.37-2 libprocps8=2:3.3.16-5 libpython3-stdlib=3.8.2-3 libpython3.8-minimal=3.8.4~rc1-1 libpython3.8-stdlib=3.8.4~rc1-1 libquadmath0=10.1.0-4 libreadline8=8.0-4 libseccomp2=2.4.3-1+b1 libselinux1=3.0-1+b3 libsigsegv2=2.12-2 libsmartcols1=2.35.2-6 libsqlite3-0=3.32.3-1 libssl1.1=1.1.1g-1 libstdc++-9-dev=9.3.0-14 libstdc++6=10.1.0-4 libsub-override-perl=0.09-2 libsystemd0=245.6-2 libtcl8.6=8.6.10+dfsg-1 libtiff5=4.1.0+git191117-2 libtinfo6=6.2-1 libtk8.6=8.6.10-1 libtool=2.4.6-14 libtsan0=10.1.0-4 libubsan1=10.1.0-4 libuchardet0=0.0.7-1 libudev1=245.6-2 libunistring2=0.9.10-4 libuuid1=2.35.2-6 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libx11-6=2:1.6.9-2+b1 libx11-data=2:1.6.9-2 libxau6=1:1.0.8-1+b2 libxcb1=1.14-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxft2=2.3.2-2 libxml2=2.9.10+dfsg-5+b1 libxrender1=1:0.9.10-1 libxss1=1:1.2.3-1 libzstd1=1.4.5+dfsg-3 linux-libc-dev=5.7.6-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 mime-support=3.64 ncurses-base=6.2-1 ncurses-bin=6.2-1 node-jquery=3.5.1+dfsg-4 patch=2.7.6-6 perl=5.30.3-4 perl-base=5.30.3-4 perl-modules-5.30=5.30.3-4 po-debconf=1.0.21 procps=2:3.3.16-5 python-matplotlib-data=3.2.2-1 python3=3.8.2-3 python3-biopython=1.77+dfsg-2 python3-cycler=0.10.0-3 python3-dateutil=2.8.1-4 python3-decorator=4.4.2-2 python3-distutils=3.8.3-2 python3-joblib=0.14.0-3 python3-kiwisolver=1.0.1-3+b1 python3-lib2to3=3.8.3-2 python3-matplotlib=3.2.2-1 python3-minimal=3.8.2-3 python3-numpy=1:1.19.0-1 python3-pandas=0.25.3+dfsg2-3 python3-pandas-lib=0.25.3+dfsg2-3 python3-pil=7.0.0-4+b1 python3-pkg-resources=46.1.3-1 python3-progressbar=2.5-2 python3-pyparsing=2.4.7-1 python3-reportlab=3.5.34-1 python3-reportlab-accel=3.5.34-1+b1 python3-scipy=1.4.1-2 python3-setuptools=46.1.3-1 python3-six=1.15.0-1 python3-sklearn=0.22.2.post1+dfsg-7 python3-sklearn-lib=0.22.2.post1+dfsg-7 python3-tk=3.8.3-2 python3-tz=2020.1-1 python3.8=3.8.4~rc1-1 python3.8-minimal=3.8.4~rc1-1 readline-common=8.0-4 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-3 tar=1.30+dfsg-7 tk8.6-blt2.5=2.5.3+dfsg-4+b1 ttf-bitstream-vera=1.10-8 tzdata=2020a-1 ucf=3.0043 util-linux=2.35.2-6 x11-common=1:7.7+20 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200721T084125Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200705T204532Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d python-pauvre=0.2.2-2 && mkdir -p /build/python-pauvre-i4S3HQ && dpkg-source --no-check -x /*.dsc /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2 && chown -R builduser:builduser /build/python-pauvre-i4S3HQ" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1594226439" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/python-pauvre-i4S3HQ /tmp/python-pauvre-0.2.2-27mi582lt bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200705T204532Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.6EsKl_Jvmt as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.6EsKl_Jvmt Reading package lists... Building dependency tree... util-linux is already the newest version (2.35.2-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200705T204532Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200705T204532Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (1107 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4633 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.30-8) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200721T084125Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200705T204532Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.6EsKl_Jvmt Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200721T084125Z unstable InRelease [146 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20200705T204532Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20200721T084125Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20200721T084125Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20200721T084125Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20200721T084125Z unstable/main amd64 Packages [11.3 MB] Fetched 34.0 MB in 29s (1163 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.6EsKl_Jvmt I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d python-pauvre=0.2.2-2 && mkdir -p /build/python-pauvre-i4S3HQ && dpkg-source --no-check -x /*.dsc /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2 && chown -R builduser:builduser /build/python-pauvre-i4S3HQ"' exec /tmp/mmdebstrap.6EsKl_Jvmt Reading package lists... NOTICE: 'python-pauvre' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-pauvre.git Please use: git clone https://salsa.debian.org/med-team/python-pauvre.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 70.9 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-pauvre 0.2.2-2 (dsc) [2344 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-pauvre 0.2.2-2 (tar) [61.9 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-pauvre 0.2.2-2 (diff) [6684 B] Fetched 70.9 kB in 0s (770 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'python-pauvre_0.2.2-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting python-pauvre in /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2 dpkg-source: info: unpacking python-pauvre_0.2.2.orig.tar.gz dpkg-source: info: unpacking python-pauvre_0.2.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying lsi-test-args.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1594226439" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.6EsKl_Jvmt dpkg-buildpackage: info: source package python-pauvre dpkg-buildpackage: info: source version 0.2.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python3.8 setup.py clean running clean removing '/build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-indep dh binary-indep --with python3 --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:217: python3.8 setup.py config running config dh_auto_build -i -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre copying pauvre/synplot.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre copying pauvre/__init__.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre copying pauvre/rcparams.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre copying pauvre/gfftools.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre copying pauvre/pauvre_main.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre copying pauvre/stats.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre copying pauvre/redwood.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre copying pauvre/functions.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre copying pauvre/marginplot.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre copying pauvre/bamparse.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre copying pauvre/browser.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre copying pauvre/version.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre copying pauvre/custommargin.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre creating /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi copying pauvre/lsi/lsi.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi copying pauvre/lsi/__init__.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi copying pauvre/lsi/helper.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi copying pauvre/lsi/Q.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi copying pauvre/lsi/T.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi copying pauvre/lsi/test.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi creating /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests copying pauvre/tests/__init__.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests copying pauvre/tests/test_synplot.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests running egg_info writing pauvre.egg-info/PKG-INFO writing dependency_links to pauvre.egg-info/dependency_links.txt writing entry points to pauvre.egg-info/entry_points.txt writing requirements to pauvre.egg-info/requires.txt writing top-level names to pauvre.egg-info/top_level.txt reading manifest file 'pauvre.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pauvre.egg-info/SOURCES.txt' debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-pauvre-i4S3HQ/python-pauvre-0.2.2' PYBUILDDIR="$(echo "/build/python-pauvre-i4S3HQ/python-pauvre-0.2.2"/.pybuild/cpython3_3.*/build)" \ && mkdir -p "${PYBUILDDIR}/pauvre/tests/testdata/alignments" \ "${PYBUILDDIR}/pauvre/tests/testresults" \ && cp -r "/build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/tests/gff_files" \ "${PYBUILDDIR}/pauvre/tests/testdata" \ && BUILDDIR="${PYBUILDDIR}" PATH="/build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/bin:$PATH" \ dh_auto_test \ && rm "${PYBUILDDIR}/input" \ && rm -r "${PYBUILDDIR}/pauvre/tests/testdata" \ "${PYBUILDDIR}/pauvre/tests/testresults" I: pybuild base:217: cd /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build; python3.8 -m unittest discover -v test_normal_plotting_scenario (pauvre.tests.test_synplot.libSeq_test_case) This verifies that the LibSeq class is constructed with all of the ... + export PYTHONPATH=/build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build + PYTHONPATH=/build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build + exec python3 /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/pauvre_main.py synplot --aln_dir /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests/testdata/alignments/ --fileform pdf --gff_paths /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff --center_on COX1 --gff_labels 'B. forskalii' 'P. bachei' 'M. leidyi' 0% | | 1% | | 2% |# | 3% |## | 4% |## | 5% |### | 6% |#### | 7% |##### | 8% |##### | 9% |###### | 10% |####### | 11% |######## | 12% |######## | 13% |######### | 14% 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|###################################################################### | 99% |####################################################################### | 100% |########################################################################| - Setting tick labels. - Running print_images. findfont: Font family ['sans-serif'] not found. Falling back to DejaVu Sans. findfont: Font family ['sans-serif'] not found. Falling back to DejaVu Sans. Line sweep results: TIME ELAPSED: 0.004580259323120117 N^2 comparison results: 0 TIME ELAPSED: 0.0009310245513916016 13 13 The data is: Namespace(BASENAME=None, QUIET=False, aln_dir='/build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests/testdata/alignments', center_on='COX1', command='synplot', dpi=600, fileform=['pdf'], func=, gff_labels=['B. forskalii', 'P. bachei', 'M. leidyi'], gff_paths=['/build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff', '/build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff', '/build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff'], no_timestamp=False, optimum_order=False, ratio=None, sandwich=False, start_with_aligned_genes=False, stop_codons=True, transparent=True) The best gene combination is [0, 1, 2] new fewest global intersections: 42 new fewest global intersections: 40 new fewest global intersections: 38 new fewest global intersections: 34 new fewest global intersections: 32 getting alignments file list is: {} done getting alignments seqs_dict is: {} sequence source featType start stop strand tags name center width lmost rmost track 0 Bf201706_circ Geneious gene -1342 -782 + Name=COX2 COX2 -1062.0 561 -1342 -782 0 1 Bf201706_circ Geneious gene -760 761 + Name=COX1 COX1 0.5 1521 -760 761 0 2 Bf201706_circ Geneious rRNA 1119 1495 + Name=12S 12S 1307.0 376 1119 1495 0 3 Bf201706_circ Geneious rRNA 1495 2355 + Name=16S 16S 1925.0 860 1495 2355 0 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 5 Bf201706_circ Geneious gene 2547 3288 + Name=COX3 COX3 2917.5 741 2547 3288 0 6 Bf201706_circ Geneious gene 3563 3935 + Name=ND3 ND3 3749.0 372 3563 3935 0 7 Bf201706_circ Geneious gene 3938 5018 + Name=ND4 ND4 4478.0 1080 3938 5018 0 8 Bf201706_circ Geneious gene 5020 5206 + Name=ND4L ND4L 5113.0 186 5020 5206 0 9 Bf201706_circ Geneious gene 5220 6696 + Name=ND5 ND5 5958.0 1476 5220 6696 0 10 Bf201706_circ Geneious gene 6847 7909 + Name=URF1 URF1 7378.0 1062 6847 7909 0 11 Bf201706_circ Geneious gene 8439 9105 + Name=URF2 URF2 8772.0 666 8439 9105 0 12 Bf201706_circ Geneious gene 9255 9981 + Name=ND2 ND2 9618.0 726 9255 9981 0 13 Bf201706_circ Geneious gene 10102 11155 + Name=CYTB CYTB 10628.5 1053 10102 11155 0 14 Bf201706_circ Geneious gene 11076 11988 + Name=ND1 ND1 11532.0 912 11076 11988 0 len plottable 15 - i,j are currently: 0,1 stop: -782. start: -760. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 Bf201706_circ Geneious gene -1342 -782 + Name=COX2 COX2 -1062.0 561 -1342 -782 0 - i,j are currently: 1,1 stop: 761. start: 1119. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 Bf201706_circ Geneious gene -760 761 + Name=COX1 COX1 0.5 1521 -760 761 0 - i,j are currently: 2,1 stop: 1495. start: 1495. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 Bf201706_circ Geneious rRNA 1119 1495 + Name=12S 12S 1307.0 376 1119 1495 0 - i,j are currently: 3,1 stop: 2355. start: 2338. - i,j are currently: 3,2 stop: 2355. start: 2547. - putting elements 3 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 Bf201706_circ Geneious rRNA 1495 2355 + Name=16S 16S 1925.0 860 1495 2355 0 1 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 - i,j are currently: 4,1 stop: 2539. start: 2547. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 - i,j are currently: 5,1 stop: 3288. start: 3563. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 Bf201706_circ Geneious gene 2547 3288 + Name=COX3 COX3 2917.5 741 2547 3288 0 - i,j are currently: 6,1 stop: 3935. start: 3938. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 Bf201706_circ Geneious gene 3563 3935 + Name=ND3 ND3 3749.0 372 3563 3935 0 - i,j are currently: 7,1 stop: 5018. start: 5020. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 Bf201706_circ Geneious gene 3938 5018 + Name=ND4 ND4 4478.0 1080 3938 5018 0 - i,j are currently: 8,1 stop: 5206. start: 5220. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 Bf201706_circ Geneious gene 5020 5206 + Name=ND4L ND4L 5113.0 186 5020 5206 0 - i,j are currently: 9,1 stop: 6696. start: 6847. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 Bf201706_circ Geneious gene 5220 6696 + Name=ND5 ND5 5958.0 1476 5220 6696 0 - i,j are currently: 10,1 stop: 7909. start: 8439. - putting elements 10 through (including) 11 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 Bf201706_circ Geneious gene 6847 7909 + Name=URF1 URF1 7378.0 1062 6847 7909 0 - i,j are currently: 11,1 stop: 9105. start: 9255. - putting elements 11 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 11 Bf201706_circ Geneious gene 8439 9105 + Name=URF2 URF2 8772.0 666 8439 9105 0 - i,j are currently: 12,1 stop: 9981. start: 10102. - putting elements 12 through (including) 13 together index sequence source featType start stop strand tags name center width lmost rmost track 0 12 Bf201706_circ Geneious gene 9255 9981 + Name=ND2 ND2 9618.0 726 9255 9981 0 - i,j are currently: 13,1 stop: 11155. start: 11076. index sequence source featType start stop strand tags name center width lmost rmost track 0 13 Bf201706_circ Geneious gene 10102 11155 + Name=CYTB CYTB 10628.5 1053 10102 11155 0 1 14 Bf201706_circ Geneious gene 11076 11988 + Name=ND1 ND1 11532.0 912 11076 11988 0 normal path is: Path(array([[-1342. , 2.27], [ -862. , 2.27], [ -782. , 2. ], [ -862. , 1.73], [-1342. , 1.73], [-1342. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-1342, 2.27) ...) length of myPatches is: 1 normal path is: Path(array([[-760. , 2.27], [ 681. , 2.27], [ 761. , 2. ], [ 681. , 1.73], [-760. , 1.73], [-760. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-760, 2.27) ...) length of myPatches is: 2 normal path is: Path(array([[1119. , 2.27], [1415. , 2.27], [1495. , 2. ], [1415. , 1.73], [1119. , 1.73], [1119. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1119, 2.27) ...) length of myPatches is: 3 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((1495, 2.27) ...) length of myPatches is: 4 there are 2 patches after gffplot_feature_hori PathPatch7((2338, 2.27) ...) length of myPatches is: 5 normal path is: Path(array([[2.338e+03, 2.270e+00], [2.459e+03, 2.270e+00], [2.539e+03, 2.000e+00], [2.459e+03, 1.730e+00], [2.338e+03, 1.730e+00], [2.338e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2338, 2.27) ...) length of myPatches is: 6 normal path is: Path(array([[2.547e+03, 2.270e+00], [3.208e+03, 2.270e+00], [3.288e+03, 2.000e+00], [3.208e+03, 1.730e+00], [2.547e+03, 1.730e+00], [2.547e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2547, 2.27) ...) length of myPatches is: 7 normal path is: Path(array([[3.563e+03, 2.270e+00], [3.855e+03, 2.270e+00], [3.935e+03, 2.000e+00], [3.855e+03, 1.730e+00], [3.563e+03, 1.730e+00], [3.563e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3563, 2.27) ...) length of myPatches is: 8 normal path is: Path(array([[3.938e+03, 2.270e+00], [4.938e+03, 2.270e+00], [5.018e+03, 2.000e+00], [4.938e+03, 1.730e+00], [3.938e+03, 1.730e+00], [3.938e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3938, 2.27) ...) length of myPatches is: 9 normal path is: Path(array([[5.020e+03, 2.270e+00], [5.126e+03, 2.270e+00], [5.206e+03, 2.000e+00], [5.126e+03, 1.730e+00], [5.020e+03, 1.730e+00], [5.020e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5020, 2.27) ...) length of myPatches is: 10 normal path is: Path(array([[5.220e+03, 2.270e+00], [6.616e+03, 2.270e+00], [6.696e+03, 2.000e+00], [6.616e+03, 1.730e+00], [5.220e+03, 1.730e+00], [5.220e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5220, 2.27) ...) length of myPatches is: 11 normal path is: Path(array([[6.847e+03, 2.270e+00], [7.829e+03, 2.270e+00], [7.909e+03, 2.000e+00], [7.829e+03, 1.730e+00], [6.847e+03, 1.730e+00], [6.847e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((6847, 2.27) ...) length of myPatches is: 12 normal path is: Path(array([[8.439e+03, 2.270e+00], [9.025e+03, 2.270e+00], [9.105e+03, 2.000e+00], [9.025e+03, 1.730e+00], [8.439e+03, 1.730e+00], [8.439e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((8439, 2.27) ...) length of myPatches is: 13 normal path is: Path(array([[9.255e+03, 2.270e+00], [9.901e+03, 2.270e+00], [9.981e+03, 2.000e+00], [9.901e+03, 1.730e+00], [9.255e+03, 1.730e+00], [9.255e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((9255, 2.27) ...) length of myPatches is: 14 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((10102, 2.27) ...) length of myPatches is: 15 there are 2 patches after gffplot_feature_hori PathPatch7((11076, 2.27) ...) length of myPatches is: 16 There are 16 patches at the end of gffplot_horizontal() sequence source featType start stop strand tags name center width lmost rmost track 0 JN392469 Geneious gene -767 768 + Name=COX1 gene COX1 0.5 1536 -767 768 0 1 JN392469 Geneious gene 892 1470 + Name=COX2 gene COX2 1181.0 579 892 1470 0 2 JN392469 Geneious rRNA 1750 2692 + Name=16S rRNA 16S 2221.0 943 1750 2692 0 3 JN392469 Geneious rRNA 2723 3285 + Name=12S rRNA 12S 3004.0 563 2723 3285 0 4 JN392469 Geneious gene 3286 4023 + Name=COX3 gene COX3 3654.5 738 3286 4023 0 5 JN392469 Geneious gene 4034 4699 + Name=ND2 gene ND2 4366.5 666 4034 4699 0 6 JN392469 Geneious gene 4753 5070 + Name=ND3 gene ND3 4911.5 318 4753 5070 0 7 JN392469 Geneious gene 5074 6141 + Name=ND4 gene ND4 5607.5 1068 5074 6141 0 8 JN392469 Geneious gene 6306 7385 + Name=CYTB gene CYTB 6845.5 1080 6306 7385 0 9 JN392469 Geneious gene 7390 8901 + Name=ND5 gene ND5 8145.5 1512 7390 8901 0 10 JN392469 Geneious gene 8904 9740 + Name=ND1 gene ND1 9322.0 837 8904 9740 0 11 JN392469 Geneious gene 9743 9937 + Name=ND6 gene ND6 9840.0 195 9743 9937 0 12 JN392469 Geneious gene 10035 10232 + Name=ND4L gene ND4L 10133.5 198 10035 10232 0 len plottable 13 - i,j are currently: 0,1 stop: 768. start: 892. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 JN392469 Geneious gene -767 768 + Name=COX1 gene COX1 0.5 1536 -767 768 0 - i,j are currently: 1,1 stop: 1470. start: 1750. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 JN392469 Geneious gene 892 1470 + Name=COX2 gene COX2 1181.0 579 892 1470 0 - i,j are currently: 2,1 stop: 2692. start: 2723. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 JN392469 Geneious rRNA 1750 2692 + Name=16S rRNA 16S 2221.0 943 1750 2692 0 - i,j are currently: 3,1 stop: 3285. start: 3286. - putting elements 3 through (including) 4 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 JN392469 Geneious rRNA 2723 3285 + Name=12S rRNA 12S 3004.0 563 2723 3285 0 - i,j are currently: 4,1 stop: 4023. start: 4034. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 JN392469 Geneious gene 3286 4023 + Name=COX3 gene COX3 3654.5 738 3286 4023 0 - i,j are currently: 5,1 stop: 4699. start: 4753. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 JN392469 Geneious gene 4034 4699 + Name=ND2 gene ND2 4366.5 666 4034 4699 0 - i,j are currently: 6,1 stop: 5070. start: 5074. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 JN392469 Geneious gene 4753 5070 + Name=ND3 gene ND3 4911.5 318 4753 5070 0 - i,j are currently: 7,1 stop: 6141. start: 6306. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 JN392469 Geneious gene 5074 6141 + Name=ND4 gene ND4 5607.5 1068 5074 6141 0 - i,j are currently: 8,1 stop: 7385. start: 7390. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 JN392469 Geneious gene 6306 7385 + Name=CYTB gene CYTB 6845.5 1080 6306 7385 0 - i,j are currently: 9,1 stop: 8901. start: 8904. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 JN392469 Geneious gene 7390 8901 + Name=ND5 gene ND5 8145.5 1512 7390 8901 0 - i,j are currently: 10,1 stop: 9740. start: 9743. - putting elements 10 through (including) 11 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 JN392469 Geneious gene 8904 9740 + Name=ND1 gene ND1 9322.0 837 8904 9740 0 - i,j are currently: 11,1 stop: 9937. start: 10035. - putting elements 11 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 11 JN392469 Geneious gene 9743 9937 + Name=ND6 gene ND6 9840.0 195 9743 9937 0 index sequence source featType start stop strand tags name center width lmost rmost track 0 12 JN392469 Geneious gene 10035 10232 + Name=ND4L gene ND4L 10133.5 198 10035 10232 0 normal path is: Path(array([[-7.67e+02, 1.27e+00], [ 6.88e+02, 1.27e+00], [ 7.68e+02, 1.00e+00], [ 6.88e+02, 7.30e-01], [-7.67e+02, 7.30e-01], [-7.67e+02, 1.27e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-767, 1.27) ...) length of myPatches is: 1 normal path is: Path(array([[8.92e+02, 1.27e+00], [1.39e+03, 1.27e+00], [1.47e+03, 1.00e+00], [1.39e+03, 7.30e-01], [8.92e+02, 7.30e-01], [8.92e+02, 1.27e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((892, 1.27) ...) length of myPatches is: 2 normal path is: Path(array([[1.750e+03, 1.270e+00], [2.612e+03, 1.270e+00], [2.692e+03, 1.000e+00], [2.612e+03, 7.300e-01], [1.750e+03, 7.300e-01], [1.750e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1750, 1.27) ...) length of myPatches is: 3 normal path is: Path(array([[2.723e+03, 1.270e+00], [3.205e+03, 1.270e+00], [3.285e+03, 1.000e+00], [3.205e+03, 7.300e-01], [2.723e+03, 7.300e-01], [2.723e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2723, 1.27) ...) length of myPatches is: 4 normal path is: Path(array([[3.286e+03, 1.270e+00], [3.943e+03, 1.270e+00], [4.023e+03, 1.000e+00], [3.943e+03, 7.300e-01], [3.286e+03, 7.300e-01], [3.286e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3286, 1.27) ...) length of myPatches is: 5 normal path is: Path(array([[4.034e+03, 1.270e+00], [4.619e+03, 1.270e+00], [4.699e+03, 1.000e+00], [4.619e+03, 7.300e-01], [4.034e+03, 7.300e-01], [4.034e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4034, 1.27) ...) length of myPatches is: 6 normal path is: Path(array([[4.753e+03, 1.270e+00], [4.990e+03, 1.270e+00], [5.070e+03, 1.000e+00], [4.990e+03, 7.300e-01], [4.753e+03, 7.300e-01], [4.753e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4753, 1.27) ...) length of myPatches is: 7 normal path is: Path(array([[5.074e+03, 1.270e+00], [6.061e+03, 1.270e+00], [6.141e+03, 1.000e+00], [6.061e+03, 7.300e-01], [5.074e+03, 7.300e-01], [5.074e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5074, 1.27) ...) length of myPatches is: 8 normal path is: Path(array([[6.306e+03, 1.270e+00], [7.305e+03, 1.270e+00], [7.385e+03, 1.000e+00], [7.305e+03, 7.300e-01], [6.306e+03, 7.300e-01], [6.306e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((6306, 1.27) ...) length of myPatches is: 9 normal path is: Path(array([[7.390e+03, 1.270e+00], [8.821e+03, 1.270e+00], [8.901e+03, 1.000e+00], [8.821e+03, 7.300e-01], [7.390e+03, 7.300e-01], [7.390e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((7390, 1.27) ...) length of myPatches is: 10 normal path is: Path(array([[8.904e+03, 1.270e+00], [9.660e+03, 1.270e+00], [9.740e+03, 1.000e+00], [9.660e+03, 7.300e-01], [8.904e+03, 7.300e-01], [8.904e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((8904, 1.27) ...) length of myPatches is: 11 normal path is: Path(array([[9.743e+03, 1.270e+00], [9.857e+03, 1.270e+00], [9.937e+03, 1.000e+00], [9.857e+03, 7.300e-01], [9.743e+03, 7.300e-01], [9.743e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((9743, 1.27) ...) length of myPatches is: 12 normal path is: Path(array([[1.0035e+04, 1.2700e+00], [1.0152e+04, 1.2700e+00], [1.0232e+04, 1.0000e+00], [1.0152e+04, 7.3000e-01], [1.0035e+04, 7.3000e-01], [1.0035e+04, 1.2700e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((10035, 1.27) ...) length of myPatches is: 13 There are 13 patches at the end of gffplot_horizontal() sequence source featType start stop strand tags name center width lmost rmost track 0 NC_016117 Geneious gene -760 760 + Name=COX1 gene COX1 0.0 1521 -760 760 0 1 NC_016117 Geneious gene 764 1486 + Name=COX3 gene COX3 1125.0 723 764 1486 0 2 NC_016117 Geneious gene 1486 1809 + Name=ND3 gene ND3 1647.5 324 1486 1809 0 3 NC_016117 Geneious gene 1813 2388 + Name=COX2 gene COX2 2100.5 576 1813 2388 0 4 NC_016117 Geneious rRNA 2392 2759 + Name=12S rRNA 12S 2575.5 368 2392 2759 0 5 NC_016117 Geneious rRNA 2760 3637 + Name=16S rRNA 16S 3198.5 878 2760 3637 0 6 NC_016117 Geneious gene 3638 4729 + Name=ND4 gene ND4 4183.5 1092 3638 4729 0 7 NC_016117 Geneious gene 4734 5456 + Name=ND2 gene ND2 5095.0 723 4734 5456 0 8 NC_016117 Geneious gene 5460 5654 + Name=ND4L gene ND4L 5557.0 195 5460 5654 0 9 NC_016117 Geneious gene 5766 7169 + Name=ND5 gene ND5 6467.5 1404 5766 7169 0 10 NC_016117 Geneious gene 7172 8038 + Name=ND1 gene ND1 7605.0 867 7172 8038 0 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 12 NC_016117 Geneious gene 9086 9286 + Name=ND6 gene ND6 9186.0 201 9086 9286 0 len plottable 13 - i,j are currently: 0,1 stop: 760. start: 764. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 NC_016117 Geneious gene -760 760 + Name=COX1 gene COX1 0.0 1521 -760 760 0 - i,j are currently: 1,1 stop: 1486. start: 1486. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 NC_016117 Geneious gene 764 1486 + Name=COX3 gene COX3 1125.0 723 764 1486 0 - i,j are currently: 2,1 stop: 1809. start: 1813. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 NC_016117 Geneious gene 1486 1809 + Name=ND3 gene ND3 1647.5 324 1486 1809 0 - i,j are currently: 3,1 stop: 2388. start: 2392. - putting elements 3 through (including) 4 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 NC_016117 Geneious gene 1813 2388 + Name=COX2 gene COX2 2100.5 576 1813 2388 0 - i,j are currently: 4,1 stop: 2759. start: 2760. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 NC_016117 Geneious rRNA 2392 2759 + Name=12S rRNA 12S 2575.5 368 2392 2759 0 - i,j are currently: 5,1 stop: 3637. start: 3638. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 NC_016117 Geneious rRNA 2760 3637 + Name=16S rRNA 16S 3198.5 878 2760 3637 0 - i,j are currently: 6,1 stop: 4729. start: 4734. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 NC_016117 Geneious gene 3638 4729 + Name=ND4 gene ND4 4183.5 1092 3638 4729 0 - i,j are currently: 7,1 stop: 5456. start: 5460. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 NC_016117 Geneious gene 4734 5456 + Name=ND2 gene ND2 5095.0 723 4734 5456 0 - i,j are currently: 8,1 stop: 5654. start: 5766. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 NC_016117 Geneious gene 5460 5654 + Name=ND4L gene ND4L 5557.0 195 5460 5654 0 - i,j are currently: 9,1 stop: 7169. start: 7172. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 NC_016117 Geneious gene 5766 7169 + Name=ND5 gene ND5 6467.5 1404 5766 7169 0 - i,j are currently: 10,1 stop: 8038. start: 8014. - i,j are currently: 10,2 stop: 8038. start: 9086. - putting elements 10 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 NC_016117 Geneious gene 7172 8038 + Name=ND1 gene ND1 7605.0 867 7172 8038 0 1 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 - i,j are currently: 11,1 stop: 9096. start: 9086. index sequence source featType start stop strand tags name center width lmost rmost track 0 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 1 12 NC_016117 Geneious gene 9086 9286 + Name=ND6 gene ND6 9186.0 201 9086 9286 0 normal path is: Path(array([[-7.6e+02, 2.7e-01], [ 6.8e+02, 2.7e-01], [ 7.6e+02, 0.0e+00], [ 6.8e+02, -2.7e-01], [-7.6e+02, -2.7e-01], [-7.6e+02, 2.7e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-760, 0.27) ...) length of myPatches is: 1 normal path is: Path(array([[ 7.640e+02, 2.700e-01], [ 1.406e+03, 2.700e-01], [ 1.486e+03, 0.000e+00], [ 1.406e+03, -2.700e-01], [ 7.640e+02, -2.700e-01], [ 7.640e+02, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((764, 0.27) ...) length of myPatches is: 2 normal path is: Path(array([[ 1.486e+03, 2.700e-01], [ 1.729e+03, 2.700e-01], [ 1.809e+03, 0.000e+00], [ 1.729e+03, -2.700e-01], [ 1.486e+03, -2.700e-01], [ 1.486e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1486, 0.27) ...) length of myPatches is: 3 normal path is: Path(array([[ 1.813e+03, 2.700e-01], [ 2.308e+03, 2.700e-01], [ 2.388e+03, 0.000e+00], [ 2.308e+03, -2.700e-01], [ 1.813e+03, -2.700e-01], [ 1.813e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1813, 0.27) ...) length of myPatches is: 4 normal path is: Path(array([[ 2.392e+03, 2.700e-01], [ 2.679e+03, 2.700e-01], [ 2.759e+03, 0.000e+00], [ 2.679e+03, -2.700e-01], [ 2.392e+03, -2.700e-01], [ 2.392e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2392, 0.27) ...) length of myPatches is: 5 normal path is: Path(array([[ 2.760e+03, 2.700e-01], [ 3.557e+03, 2.700e-01], [ 3.637e+03, 0.000e+00], [ 3.557e+03, -2.700e-01], [ 2.760e+03, -2.700e-01], [ 2.760e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2760, 0.27) ...) length of myPatches is: 6 normal path is: Path(array([[ 3.638e+03, 2.700e-01], [ 4.649e+03, 2.700e-01], [ 4.729e+03, 0.000e+00], [ 4.649e+03, -2.700e-01], [ 3.638e+03, -2.700e-01], [ 3.638e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3638, 0.27) ...) length of myPatches is: 7 normal path is: Path(array([[ 4.734e+03, 2.700e-01], [ 5.376e+03, 2.700e-01], [ 5.456e+03, 0.000e+00], [ 5.376e+03, -2.700e-01], [ 4.734e+03, -2.700e-01], [ 4.734e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4734, 0.27) ...) length of myPatches is: 8 normal path is: Path(array([[ 5.460e+03, 2.700e-01], [ 5.574e+03, 2.700e-01], [ 5.654e+03, 0.000e+00], [ 5.574e+03, -2.700e-01], [ 5.460e+03, -2.700e-01], [ 5.460e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5460, 0.27) ...) length of myPatches is: 9 normal path is: Path(array([[ 5.766e+03, 2.700e-01], [ 7.089e+03, 2.700e-01], [ 7.169e+03, 0.000e+00], [ 7.089e+03, -2.700e-01], [ 5.766e+03, -2.700e-01], [ 5.766e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5766, 0.27) ...) length of myPatches is: 10 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((7172, 0.27) ...) length of myPatches is: 11 there are 2 patches after gffplot_feature_hori PathPatch7((8014, 0.27) ...) length of myPatches is: 12 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((8014, 0.27) ...) length of myPatches is: 13 there are 2 patches after gffplot_feature_hori PathPatch7((9086, 0.27) ...) length of myPatches is: 14 There are 14 patches at the end of gffplot_horizontal() ok ---------------------------------------------------------------------- Ran 1 test in 181.209s OK The return code is: 0 make[1]: Leaving directory '/build/python-pauvre-i4S3HQ/python-pauvre-0.2.2' create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild dh_auto_install -i -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre running install running build running build_py running egg_info writing pauvre.egg-info/PKG-INFO writing dependency_links to pauvre.egg-info/dependency_links.txt writing entry points to pauvre.egg-info/entry_points.txt writing requirements to pauvre.egg-info/requires.txt writing top-level names to pauvre.egg-info/top_level.txt reading manifest file 'pauvre.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pauvre.egg-info/SOURCES.txt' running install_lib creating /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr creating /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib creating /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8 creating /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages creating /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/synplot.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/__init__.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/rcparams.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/gfftools.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/pauvre_main.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/stats.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/redwood.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre creating /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi/lsi.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi/__init__.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi/helper.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi/Q.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi/T.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi creating /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi/__pycache__/test.cpython-38.pyc -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi/__pycache__/__init__.cpython-38.pyc -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi/__pycache__/Q.cpython-38.pyc -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi/__pycache__/helper.cpython-38.pyc -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi/__pycache__/lsi.cpython-38.pyc -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi/__pycache__/T.cpython-38.pyc -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/lsi/test.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/functions.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/marginplot.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/bamparse.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre creating /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/tests copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests/__init__.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/tests copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests/test_synplot.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/tests creating /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/tests/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests/__pycache__/__init__.cpython-38.pyc -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/tests/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/tests/__pycache__/test_synplot.cpython-38.pyc -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/tests/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/browser.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre creating /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/__pycache__/functions.cpython-38.pyc -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/__pycache__/__init__.cpython-38.pyc -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/__pycache__/rcparams.cpython-38.pyc -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/__pycache__/gfftools.cpython-38.pyc -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/__pycache__/synplot.cpython-38.pyc -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/__pycache__/version.cpython-38.pyc -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/version.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre copying /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/.pybuild/cpython3_3.8_pauvre/build/pauvre/custommargin.py -> /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/synplot.py to synplot.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/rcparams.py to rcparams.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/gfftools.py to gfftools.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/pauvre_main.py to pauvre_main.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/stats.py to stats.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/redwood.py to redwood.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi/lsi.py to lsi.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi/helper.py to helper.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi/Q.py to Q.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi/T.py to T.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/lsi/test.py to test.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/functions.py to functions.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/marginplot.py to marginplot.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/bamparse.py to bamparse.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/tests/test_synplot.py to test_synplot.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/browser.py to browser.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/version.py to version.cpython-38.pyc byte-compiling /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre/custommargin.py to custommargin.cpython-38.pyc running install_egg_info Copying pauvre.egg-info to /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.8/dist-packages/pauvre-0.2.2.egg-info Skipping SOURCES.txt running install_scripts Installing pauvre script to /build/python-pauvre-i4S3HQ/python-pauvre-0.2.2/debian/python3-pauvre/usr/bin dh_installdocs -i -O--buildsystem=pybuild dh_installchangelogs -i -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/python-pauvre-i4S3HQ/python-pauvre-0.2.2' # Do not install test script in Python lib find debian -name scripts -type d | xargs rm -rf dh_installexamples sed -i 's/^git clone/#&/' `find debian -name test.sh` make[1]: Leaving directory '/build/python-pauvre-i4S3HQ/python-pauvre-0.2.2' dh_installman -i -O--buildsystem=pybuild dh_python3 -i -O--buildsystem=pybuild dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild dh_fixperms -i -O--buildsystem=pybuild dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'python3-pauvre' in '../python3-pauvre_0.2.2-2_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../python-pauvre_0.2.2-2_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/python-pauvre-i4S3HQ /tmp/python-pauvre-0.2.2-27mi582lt I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.6EsKl_Jvmt... I: success in 615.3528 seconds md5: python3-pauvre_0.2.2-2_all.deb: OK sha1: python3-pauvre_0.2.2-2_all.deb: OK sha256: python3-pauvre_0.2.2-2_all.deb: OK Checksums: OK