Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/python-gsd/python-gsd_2.5.1-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/python-gsd-2.5.1-19o4n6388/python-gsd_2.5.1-1_all.buildinfo Get source package info: python-gsd=2.5.1-1 Source URL: http://snapshot.notset.fr/mr/package/python-gsd/2.5.1-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.37.90.20220207-1 binutils-common=2.37.90.20220207-1 binutils-x86-64-linux-gnu=2.37.90.20220207-1 bsdextrautils=2.37.3-1+b1 bsdutils=1:2.37.3-1+b1 build-essential=12.9 bzip2=1.0.8-5 ca-certificates=20211016 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-16 cython3=0.29.24-2 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.7-0.1 dh-autoreconf=20 dh-python=5.20220119 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 docutils-common=0.17.1+dfsg-2 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 fonts-font-awesome=5.0.10+really4.7.0~dfsg-4.1 fonts-lato=2.0-2.1 fonts-mathjax=2.7.9+dfsg-1 g++=4:11.2.0-2 g++-11=11.2.0-16 gcc=4:11.2.0-2 gcc-11=11.2.0-16 gcc-11-base=11.2.0-16 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-16 libatomic1=11.2.0-16 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37.90.20220207-1 libblas3=3.10.0-2 libblkid1=2.37.3-1+b1 libbsd0=0.11.5-1+b1 libbz2-1.0=1.0.8-5 libc-bin=2.33-5 libc-dev-bin=2.33-5 libc6=2.33-5 libc6-dev=2.33-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-16 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.37.90.20220207-1 libctf0=2.37.90.20220207-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdpkg-perl=1.21.1 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.4-1 libexpat1-dev=2.4.4-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.2.0-16 libgcc-s1=11.2.0-16 libgcrypt20=1.9.4-5 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgfortran5=11.2.0-16 libgmp10=2:6.2.1+dfsg-3 libgomp1=11.2.0-16 libgpg-error0=1.43-3 libgssapi-krb5-2=1.18.3-7 libicu67=67.1-7 libisl23=0.24-2 libitm1=11.2.0-16 libjs-jquery=3.5.1+dfsg+~3.5.5-8 libjs-mathjax=2.7.9+dfsg-1 libjs-sphinxdoc=4.3.2-1 libjs-underscore=1.13.2~dfsg-2 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-2 liblsan0=11.2.0-16 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libmount1=2.37.3-1+b1 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.3-2 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.34=5.34.0-3 libpipeline1=1.5.5-1 libpython3-all-dev=3.9.8-1 libpython3-dev=3.9.8-1 libpython3-stdlib=3.9.8-1 libpython3.10=3.10.2-1 libpython3.10-dev=3.10.2-1 libpython3.10-minimal=3.10.2-1 libpython3.10-stdlib=3.10.2-1 libpython3.9=3.9.10-1 libpython3.9-dev=3.9.10-1 libpython3.9-minimal=3.9.10-1 libpython3.9-stdlib=3.9.10-1 libquadmath0=11.2.0-16 libreadline8=8.1.2-1 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.14-1 libsmartcols1=2.37.3-1+b1 libsqlite3-0=3.37.2-2 libssl1.1=1.1.1m-1 libstdc++-11-dev=11.2.0-16 libstdc++6=11.2.0-16 libsub-override-perl=0.09-2 libsystemd0=250.3-2 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-16 libubsan1=11.2.0-16 libuchardet0=0.0.7-1 libudev1=250.3-2 libunistring2=1.0-1 libuuid1=2.37.3-1+b1 libxml2=2.9.12+dfsg-5+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.16.7-2 login=1:4.11.1+dfsg1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.0-2 mawk=1.3.4.20200120-3+b1 media-types=5.0.0 ncurses-base=6.3-2 ncurses-bin=6.3-2 openssl=1.1.1m-1 patch=2.7.6-7 perl=5.34.0-3 perl-base=5.34.0-3 perl-modules-5.34=5.34.0-3 po-debconf=1.0.21+nmu1 python-babel-localedata=2.8.0+dfsg.1-7 python-numpy-doc=1:1.21.5-1 python3=3.9.8-1 python3-alabaster=0.7.12-1 python3-all=3.9.8-1 python3-all-dev=3.9.8-1 python3-babel=2.8.0+dfsg.1-7 python3-backcall=0.2.0-2 python3-certifi=2020.6.20-1 python3-chardet=4.0.0-1 python3-decorator=4.4.2-2 python3-dev=3.9.8-1 python3-distutils=3.9.10-1 python3-doc=3.9.8-1 python3-docutils=0.17.1+dfsg-2 python3-idna=3.2-2 python3-imagesize=1.3.0-1 python3-ipython=7.31.1-1 python3-jedi=0.18.0-1 python3-jinja2=3.0.1-2 python3-lib2to3=3.9.10-1 python3-markupsafe=2.0.1-2+b1 python3-matplotlib-inline=0.1.3-1 python3-minimal=3.9.8-1 python3-numpy=1:1.21.5-1 python3-packaging=21.3-1 python3-parso=0.8.1-1 python3-pexpect=4.8.0-2 python3-pickleshare=0.7.5-5 python3-pkg-resources=59.6.0-1.2 python3-prompt-toolkit=3.0.27-1 python3-ptyprocess=0.7.0-3 python3-pygments=2.10.0+dfsg-1 python3-pyparsing=3.0.7-1 python3-requests=2.25.1+dfsg-2 python3-roman=3.3-1 python3-setuptools=59.6.0-1.2 python3-six=1.16.0-3 python3-snowballstemmer=2.2.0-1 python3-sphinx=4.3.2-1 python3-sphinx-rtd-theme=1.0.0+dfsg-1 python3-traitlets=5.1.1-1 python3-tz=2021.3-1 python3-urllib3=1.26.5-1~exp1 python3-wcwidth=0.2.5+dfsg1-1 python3.10=3.10.2-1 python3.10-dev=3.10.2-1 python3.10-minimal=3.10.2-1 python3.9=3.9.10-1 python3.9-dev=3.9.10-1 python3.9-doc=3.9.10-1 python3.9-minimal=3.9.10-1 readline-common=8.1.2-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sgml-base=1.30 sphinx-common=4.3.2-1 sphinx-rtd-theme-common=1.0.0+dfsg-1 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 tzdata=2021e-1 util-linux=2.37.3-1+b1 xml-core=0.18+nmu1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220212T031344Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220212T031344Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220209T214738Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d python-gsd=2.5.1-1 && mkdir -p /build/python-gsd-tByNP7 && dpkg-source --no-check -x /*.dsc /build/python-gsd-tByNP7/python-gsd-2.5.1 && chown -R builduser:builduser /build/python-gsd-tByNP7" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-gsd-tByNP7/python-gsd-2.5.1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1644491429" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/python-gsd-tByNP7 /tmp/python-gsd-2.5.1-19o4n6388 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220209T214738Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.tSWo1uo4W4 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.tSWo1uo4W4 Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220209T214738Z unstable/main amd64 libfakeroot amd64 1.27-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220209T214738Z unstable/main amd64 fakeroot amd64 1.27-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (1037 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4697 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.27-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.27-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.27-1_amd64.deb ... Unpacking fakeroot (1.27-1) ... Setting up libfakeroot:amd64 (1.27-1) ... Setting up fakeroot (1.27-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220212T031344Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220212T031344Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220209T214738Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.tSWo1uo4W4 Get:1 http://snapshot.notset.fr/archive/debian/20220212T031344Z bookworm InRelease [129 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20220209T214738Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20220212T031344Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220212T031344Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220212T031344Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220212T031344Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220212T031344Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220212T031344Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20220212T031344Z bookworm/main Sources [11.8 MB] Get:4 http://snapshot.notset.fr/archive/debian/20220212T031344Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.2 MB in 20s (1161 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.tSWo1uo4W4 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d python-gsd=2.5.1-1 && mkdir -p /build/python-gsd-tByNP7 && dpkg-source --no-check -x /*.dsc /build/python-gsd-tByNP7/python-gsd-2.5.1 && chown -R builduser:builduser /build/python-gsd-tByNP7"' exec /tmp/mmdebstrap.tSWo1uo4W4 Reading package lists... NOTICE: 'python-gsd' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/python-gsd.git Please use: git clone https://salsa.debian.org/debichem-team/python-gsd.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 112 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220212T031344Z bookworm/main python-gsd 2.5.1-1 (dsc) [2276 B] Get:2 http://snapshot.notset.fr/archive/debian/20220212T031344Z bookworm/main python-gsd 2.5.1-1 (tar) [105 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220212T031344Z bookworm/main python-gsd 2.5.1-1 (diff) [4468 B] Fetched 112 kB in 0s (570 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'python-gsd_2.5.1-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting python-gsd in /build/python-gsd-tByNP7/python-gsd-2.5.1 dpkg-source: info: unpacking python-gsd_2.5.1.orig.tar.gz dpkg-source: info: unpacking python-gsd_2.5.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying docs_local_scripts.patch dpkg-source: info: applying test_large_32bit.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-gsd-tByNP7/python-gsd-2.5.1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1644491429" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.tSWo1uo4W4 dpkg-buildpackage: info: source package python-gsd dpkg-buildpackage: info: source version 2.5.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-source: info: using options from python-gsd-2.5.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:237: python3.10 setup.py clean Compiling gsd/fl.pyx because it changed. [1/1] Cythonizing gsd/fl.pyx running clean removing '/build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it I: pybuild base:237: python3.9 setup.py clean running clean removing '/build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/python-gsd-tByNP7/python-gsd-2.5.1' dh_clean rm -f gsd/fl.c || /bin/true make[1]: Leaving directory '/build/python-gsd-tByNP7/python-gsd-2.5.1' debian/rules binary-indep dh binary-indep --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:237: python3.10 setup.py config Compiling gsd/fl.pyx because it changed. [1/1] Cythonizing gsd/fl.pyx running config I: pybuild base:237: python3.9 setup.py config running config dh_auto_build -i -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3.10 setup.py build running build running build_py creating /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd copying gsd/__init__.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd copying gsd/__main__.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd copying gsd/conftest.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd copying gsd/hoomd.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd copying gsd/version.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd copying gsd/pytest_plugin_validate.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd copying gsd/pygsd.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd package init file 'gsd/test/__init__.py' not found (or not a regular file) creating /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/test copying gsd/test/test_fl.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/test copying gsd/test/conftest.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/test copying gsd/test/test_hoomd.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/test copying gsd/test/test_largefile.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/test copying gsd/test/test_gsd_v1.gsd -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/test running build_ext building 'gsd.fl' extension creating build creating build/temp.linux-x86_64-3.10 creating build/temp.linux-x86_64-3.10/gsd x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-gsd-tByNP7/python-gsd-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I./gsd -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c gsd/fl.c -o build/temp.linux-x86_64-3.10/gsd/fl.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-gsd-tByNP7/python-gsd-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I./gsd -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c gsd/gsd.c -o build/temp.linux-x86_64-3.10/gsd/gsd.o gsd/gsd.c: In function ‘gsd_expand_file_index’: gsd/gsd.c:981:44: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 981 | if (bytes_read == -1 || bytes_read != bytes_to_copy) | ^~ gsd/gsd.c:992:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 992 | if (bytes_written == -1 || bytes_written != bytes_to_copy) | ^~ gsd/gsd.c:1018:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1018 | if (bytes_written == -1 || bytes_written != bytes_to_copy) | ^~ gsd/gsd.c: In function ‘gsd_flush_write_buffer’: gsd/gsd.c:1106:46: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1106 | if (bytes_written == -1 || bytes_written != handle->write_buffer.size) | ^~ gsd/gsd.c: In function ‘gsd_flush_name_buffer’: gsd/gsd.c:1198:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1198 | if (bytes_written == -1 || bytes_written != handle->file_names.data.reserved) | ^~ gsd/gsd.c:1231:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1231 | if (bytes_written != (handle->file_names.data.reserved - old_size)) | ^~ gsd/gsd.c: In function ‘gsd_initialize_handle’: gsd/gsd.c:1467:40: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1467 | if (bytes_read == -1 || bytes_read != namelist_n_bytes) | ^~ gsd/gsd.c: In function ‘gsd_end_frame’: gsd/gsd.c:1893:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1893 | if (bytes_written == -1 || bytes_written != bytes_to_write) | ^~ gsd/gsd.c: In function ‘gsd_write_chunk’: gsd/gsd.c:2016:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2016 | if (bytes_written == -1 || bytes_written != size) | ^~ gsd/gsd.c: In function ‘gsd_read_chunk’: gsd/gsd.c:2168:40: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2168 | if (bytes_read == -1 || bytes_read != size) | ^~ gsd/gsd.c: In function ‘gsd_upgrade’: gsd/gsd.c:2344:54: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 2344 | if (bytes_written == -1 || bytes_written != sizeof(struct gsd_index_entry) * buf.size) | ^~ gsd/gsd.c:2399:54: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2399 | if (bytes_written == -1 || bytes_written != new_name_buf.reserved) | ^~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-gsd-tByNP7/python-gsd-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/gsd/fl.o build/temp.linux-x86_64-3.10/gsd/gsd.o -o /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/fl.cpython-310-x86_64-linux-gnu.so I: pybuild base:237: /usr/bin/python3 setup.py build running build running build_py creating /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd copying gsd/__init__.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd copying gsd/__main__.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd copying gsd/conftest.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd copying gsd/hoomd.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd copying gsd/version.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd copying gsd/pytest_plugin_validate.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd copying gsd/pygsd.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd package init file 'gsd/test/__init__.py' not found (or not a regular file) creating /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/test copying gsd/test/test_fl.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/test copying gsd/test/conftest.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/test copying gsd/test/test_hoomd.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/test copying gsd/test/test_largefile.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/test copying gsd/test/test_gsd_v1.gsd -> /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/test running build_ext building 'gsd.fl' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/gsd x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-gsd-tByNP7/python-gsd-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I./gsd -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gsd/fl.c -o build/temp.linux-x86_64-3.9/gsd/fl.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-gsd-tByNP7/python-gsd-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I./gsd -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gsd/gsd.c -o build/temp.linux-x86_64-3.9/gsd/gsd.o gsd/gsd.c: In function ‘gsd_expand_file_index’: gsd/gsd.c:981:44: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 981 | if (bytes_read == -1 || bytes_read != bytes_to_copy) | ^~ gsd/gsd.c:992:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 992 | if (bytes_written == -1 || bytes_written != bytes_to_copy) | ^~ gsd/gsd.c:1018:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1018 | if (bytes_written == -1 || bytes_written != bytes_to_copy) | ^~ gsd/gsd.c: In function ‘gsd_flush_write_buffer’: gsd/gsd.c:1106:46: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1106 | if (bytes_written == -1 || bytes_written != handle->write_buffer.size) | ^~ gsd/gsd.c: In function ‘gsd_flush_name_buffer’: gsd/gsd.c:1198:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1198 | if (bytes_written == -1 || bytes_written != handle->file_names.data.reserved) | ^~ gsd/gsd.c:1231:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1231 | if (bytes_written != (handle->file_names.data.reserved - old_size)) | ^~ gsd/gsd.c: In function ‘gsd_initialize_handle’: gsd/gsd.c:1467:40: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1467 | if (bytes_read == -1 || bytes_read != namelist_n_bytes) | ^~ gsd/gsd.c: In function ‘gsd_end_frame’: gsd/gsd.c:1893:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1893 | if (bytes_written == -1 || bytes_written != bytes_to_write) | ^~ gsd/gsd.c: In function ‘gsd_write_chunk’: gsd/gsd.c:2016:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2016 | if (bytes_written == -1 || bytes_written != size) | ^~ gsd/gsd.c: In function ‘gsd_read_chunk’: gsd/gsd.c:2168:40: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2168 | if (bytes_read == -1 || bytes_read != size) | ^~ gsd/gsd.c: In function ‘gsd_upgrade’: gsd/gsd.c:2344:54: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 2344 | if (bytes_written == -1 || bytes_written != sizeof(struct gsd_index_entry) * buf.size) | ^~ gsd/gsd.c:2399:54: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2399 | if (bytes_written == -1 || bytes_written != new_name_buf.reserved) | ^~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-gsd-tByNP7/python-gsd-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/gsd/fl.o build/temp.linux-x86_64-3.9/gsd/gsd.o -o /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/fl.cpython-39-x86_64-linux-gnu.so debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/python-gsd-tByNP7/python-gsd-2.5.1' PYTHONPATH=/build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build sphinx-build -b html doc /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/html # HTML generator Running Sphinx v4.3.2 making output directory... done loading intersphinx inventory from /usr/share/doc/python3/html/objects.inv... loading intersphinx inventory from /usr/share/doc/python-numpy-doc/html/objects.inv... loading intersphinx inventory from https://hoomd-blue.readthedocs.io/en/latest/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://hoomd-blue.readthedocs.io/en/latest/objects.inv' not fetchable due to : Proxy URL had no scheme, should start with http:// or https:// building [mo]: targets for 0 po files that are out of date building [html]: targets for 21 source files that are out of date updating environment: [new config] 21 added, 0 changed, 0 removed reading sources... [ 4%] c-api reading sources... [ 9%] changes reading sources... [ 14%] cli reading sources... [ 19%] community reading sources... [ 23%] contributing reading sources... [ 28%] credits reading sources... [ 33%] file-layer reading sources... [ 38%] fl-examples /usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 42%] hoomd-examples implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/invalid reading sources... [ 47%] index reading sources... [ 52%] indices reading sources... [ 57%] installation reading sources... [ 61%] license reading sources... [ 66%] python-api reading sources... [ 71%] python-module-gsd.fl reading sources... [ 76%] python-module-gsd.hoomd reading sources... [ 80%] python-module-gsd.pygsd reading sources... [ 85%] schema-hoomd reading sources... [ 90%] shapes reading sources... [ 95%] specification reading sources... [100%] style looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 4%] c-api writing output... [ 9%] changes writing output... [ 14%] cli writing output... [ 19%] community writing output... [ 23%] contributing writing output... [ 28%] credits writing output... [ 33%] file-layer writing output... [ 38%] fl-examples writing output... [ 42%] hoomd-examples writing output... [ 47%] index writing output... [ 52%] indices writing output... [ 57%] installation writing output... [ 61%] license writing output... [ 66%] python-api writing output... [ 71%] python-module-gsd.fl writing output... [ 76%] python-module-gsd.hoomd writing output... [ 80%] python-module-gsd.pygsd writing output... [ 85%] schema-hoomd writing output... [ 90%] shapes writing output... [ 95%] specification writing output... [100%] style /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.BondData:13: WARNING: 'any' reference target not found: hoomd.State /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ConstraintData:11: WARNING: 'any' reference target not found: hoomd.State /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:11: WARNING: 'any' reference target not found: hoomd.State /build/python-gsd-tByNP7/python-gsd-2.5.1/doc/schema-hoomd.rst:21: WARNING: 'any' reference target not found: hoomd.State generating indices... genindex py-modindex done writing additional pages... search done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 5 warnings. The HTML pages are in ../../build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/html. make[1]: Leaving directory '/build/python-gsd-tByNP7/python-gsd-2.5.1' dh: command-omitted: The call to "dh_auto_test -i -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild dh_auto_install -i -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3.10 setup.py install --root /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py package init file 'gsd/test/__init__.py' not found (or not a regular file) running build_ext running install_lib creating /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd creating /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr creating /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib creating /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10 creating /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages creating /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/__init__.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/__main__.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/conftest.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/hoomd.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/version.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/pytest_plugin_validate.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/pygsd.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd creating /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/test copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/test/test_fl.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/test copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/test/conftest.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/test copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/test/test_hoomd.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/test copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/test/test_largefile.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/test copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/test/test_gsd_v1.gsd -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/test copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.10_gsd/build/gsd/fl.cpython-310-x86_64-linux-gnu.so -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/__main__.py to __main__.cpython-310.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/conftest.py to conftest.cpython-310.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/hoomd.py to hoomd.cpython-310.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/version.py to version.cpython-310.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/pytest_plugin_validate.py to pytest_plugin_validate.cpython-310.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/pygsd.py to pygsd.cpython-310.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/test/test_fl.py to test_fl.cpython-310.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/test/conftest.py to conftest.cpython-310.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/test/test_hoomd.py to test_hoomd.cpython-310.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd/test/test_largefile.py to test_largefile.cpython-310.pyc running install_egg_info running egg_info creating gsd.egg-info writing gsd.egg-info/PKG-INFO writing dependency_links to gsd.egg-info/dependency_links.txt writing entry points to gsd.egg-info/entry_points.txt writing requirements to gsd.egg-info/requires.txt writing top-level names to gsd.egg-info/top_level.txt writing manifest file 'gsd.egg-info/SOURCES.txt' reading manifest file 'gsd.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'ChangeLog.md' adding license file 'LICENSE' writing manifest file 'gsd.egg-info/SOURCES.txt' Copying gsd.egg-info to /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.10/dist-packages/gsd-2.5.1.egg-info Skipping SOURCES.txt running install_scripts Installing gsd script to /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/bin I: pybuild base:237: /usr/bin/python3 setup.py install --root /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py package init file 'gsd/test/__init__.py' not found (or not a regular file) running build_ext running install_lib creating /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9 creating /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages creating /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/__init__.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/__main__.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/conftest.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/hoomd.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/version.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/pytest_plugin_validate.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/pygsd.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd creating /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/test/test_fl.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/test/conftest.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/test/test_hoomd.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/test/test_largefile.py -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/test/test_gsd_v1.gsd -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/fl.cpython-39-x86_64-linux-gnu.so -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd creating /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__pycache__ copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/__pycache__/__init__.cpython-39.pyc -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__pycache__ copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/__pycache__/version.cpython-39.pyc -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__pycache__ copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/__pycache__/__main__.cpython-39.pyc -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__pycache__ copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/__pycache__/hoomd.cpython-39.pyc -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__pycache__ copying /build/python-gsd-tByNP7/python-gsd-2.5.1/.pybuild/cpython3_3.9_gsd/build/gsd/__pycache__/pygsd.cpython-39.pyc -> /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__pycache__ byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__main__.py to __main__.cpython-39.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/conftest.py to conftest.cpython-39.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/hoomd.py to hoomd.cpython-39.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/version.py to version.cpython-39.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/pytest_plugin_validate.py to pytest_plugin_validate.cpython-39.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/pygsd.py to pygsd.cpython-39.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test/test_fl.py to test_fl.cpython-39.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test/conftest.py to conftest.cpython-39.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test/test_hoomd.py to test_hoomd.cpython-39.pyc byte-compiling /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test/test_largefile.py to test_largefile.cpython-39.pyc running install_egg_info running egg_info writing gsd.egg-info/PKG-INFO writing dependency_links to gsd.egg-info/dependency_links.txt writing entry points to gsd.egg-info/entry_points.txt writing requirements to gsd.egg-info/requires.txt writing top-level names to gsd.egg-info/top_level.txt reading manifest file 'gsd.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'ChangeLog.md' adding license file 'LICENSE' writing manifest file 'gsd.egg-info/SOURCES.txt' Copying gsd.egg-info to /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd-2.5.1.egg-info Skipping SOURCES.txt running install_scripts Installing gsd script to /build/python-gsd-tByNP7/python-gsd-2.5.1/debian/python3-gsd/usr/bin dh_installdocs -i -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-gsd-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -i -O--buildsystem=pybuild dh_installchangelogs -i -O--buildsystem=pybuild dh_installman -i -O--buildsystem=pybuild dh_python3 -i -O--buildsystem=pybuild E: dh_python3 dh_python3:176: no package to act on (python3-foo or one with ${python3:Depends} in Depends) dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild dh_fixperms -i -O--buildsystem=pybuild dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-gsd-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'python-gsd-doc' in '../python-gsd-doc_2.5.1-1_all.deb'. dpkg-genbuildinfo --build=all -O../python-gsd_2.5.1-1_all.buildinfo dpkg-genchanges --build=all -O../python-gsd_2.5.1-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-source: info: using options from python-gsd-2.5.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/python-gsd-tByNP7 /tmp/python-gsd-2.5.1-19o4n6388 I: cleaning package lists and apt cache... W: deleting files in /tmp: tmp7sha3l6u I: removing tempdir /tmp/mmdebstrap.tSWo1uo4W4... I: success in 510.6383 seconds md5: Value of 'md5' differs for python-gsd-doc_2.5.1-1_all.deb sha1: Value of 'sha1' differs for python-gsd-doc_2.5.1-1_all.deb sha256: Value of 'sha256' differs for python-gsd-doc_2.5.1-1_all.deb Checksums: FAIL Cannot generate diffoscope for python-gsd-doc_2.5.1-1_all.deb: RetryError[]