Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/python-gsd/python-gsd_2.4.0-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/python-gsd-2.4.0-1othdajbb/python-gsd_2.4.0-1_all.buildinfo Get source package info: python-gsd=2.4.0-1 Source URL: http://snapshot.notset.fr/mr/package/python-gsd/2.4.0-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-1 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-1 binutils=2.35.1-6 binutils-common=2.35.1-6 binutils-x86-64-linux-gnu=2.35.1-6 bsdextrautils=2.36.1-3 bsdutils=1:2.36.1-3 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.1-3 cython3=0.29.21-3+b1 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3 debianutils=4.11.2 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 docutils-common=0.16+dfsg-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13+20201015-2 file=1:5.39-3 findutils=4.7.0+git20201010-2 fonts-font-awesome=5.0.10+really4.7.0~dfsg-4 fonts-lato=2.0-2.1 fonts-mathjax=2.7.9+dfsg-1 g++=4:10.2.0-1 g++-10=10.2.1-3 gcc=4:10.2.0-1 gcc-10=10.2.1-3 gcc-10-base=10.2.1-3 gettext=0.21-3 gettext-base=0.21-3 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-9 libarchive-zip-perl=1.68-1 libasan6=10.2.1-3 libatomic1=10.2.1-3 libattr1=1:2.4.48-6 libaudit-common=1:3.0-1 libaudit1=1:3.0-1 libbinutils=2.35.1-6 libblas3=3.9.0-3 libblkid1=2.36.1-3 libbz2-1.0=1.0.8-4 libc-bin=2.31-6 libc-dev-bin=2.31-6 libc6=2.31-6 libc6-dev=2.31-6 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-3 libcom-err2=1.45.6-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-6 libctf0=2.35.1-6 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.3 libdpkg-perl=1.20.5 libelf1=0.182-1 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.1-3 libgcc-s1=10.2.1-3 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran5=10.2.1-3 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.1-3 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-5 libisl23=0.23-1 libitm1=10.2.1-3 libjs-jquery=3.5.1+dfsg+~3.5.5-3 libjs-mathjax=2.7.9+dfsg-1 libjs-sphinxdoc=3.4.1-1 libjs-underscore=1.9.1~dfsg-1 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack3=3.9.0-3 liblsan0=10.2.1-3 liblz4-1=1.9.3-1 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-3 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20201114-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libpython3-all-dev=3.9.1-1 libpython3-dev=3.9.1-1 libpython3-stdlib=3.9.1-1 libpython3.9=3.9.1-1 libpython3.9-dev=3.9.1-1 libpython3.9-minimal=3.9.1-1 libpython3.9-stdlib=3.9.1-1 libquadmath0=10.2.1-3 libreadline8=8.1-1 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsigsegv2=2.12-3 libsmartcols1=2.36.1-3 libsqlite3-0=3.34.0-1 libssl1.1=1.1.1i-1 libstdc++-10-dev=10.2.1-3 libstdc++6=10.2.1-3 libsub-override-perl=0.09-2 libsystemd0=247.2-3 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.1-3 libubsan1=10.2.1-3 libuchardet0=0.0.7-1 libudev1=247.2-3 libunistring2=0.9.10-4 libuuid1=2.36.1-3 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.9.15-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.68 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 node-html5shiv=3.7.3+dfsg-3 node-jquery=3.5.1+dfsg+~3.5.5-3 openssl=1.1.1i-1 patch=2.7.6-6 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 po-debconf=1.0.21 python-babel-localedata=2.8.0+dfsg.1-5 python-numpy-doc=1:1.19.4-1 python3=3.9.1-1 python3-alabaster=0.7.8-1.1 python3-all=3.9.1-1 python3-all-dev=3.9.1-1 python3-babel=2.8.0+dfsg.1-5 python3-backcall=0.2.0-1 python3-certifi=2020.6.20-1 python3-chardet=3.0.4-7 python3-decorator=4.4.2-2 python3-dev=3.9.1-1 python3-distutils=3.9.1-1 python3-doc=3.9.1-1 python3-docutils=0.16+dfsg-3 python3-idna=2.10-1 python3-imagesize=1.2.0-2 python3-ipython=7.19.0-1 python3-ipython-genutils=0.2.0-4 python3-jedi=0.18.0-1 python3-jinja2=2.11.2-1 python3-lib2to3=3.9.1-1 python3-markupsafe=1.1.1-1+b3 python3-minimal=3.9.1-1 python3-numpy=1:1.19.4-1+b1 python3-packaging=20.8-1 python3-parso=0.8.1-1 python3-pexpect=4.6.0-4 python3-pickleshare=0.7.5-3 python3-pkg-resources=51.1.0-1 python3-prompt-toolkit=3.0.8-1 python3-ptyprocess=0.6.0-3 python3-pygments=2.7.1+dfsg-1 python3-pyparsing=2.4.7-1 python3-requests=2.25.0+dfsg-1 python3-roman=2.0.0-5 python3-setuptools=51.1.0-1 python3-six=1.15.0-2 python3-snowballstemmer=2.0.0-2 python3-sphinx=3.4.1-1 python3-sphinx-rtd-theme=0.5.0+dfsg-1 python3-traitlets=5.0.5-1 python3-tz=2020.5-1 python3-urllib3=1.25.11-1 python3-wcwidth=0.1.9+dfsg1-2 python3.9=3.9.1-1 python3.9-dev=3.9.1-1 python3.9-doc=3.9.1-1 python3.9-minimal=3.9.1-1 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sgml-base=1.30 sphinx-common=3.4.1-1 sphinx-rtd-theme-common=0.5.0+dfsg-1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2020e-1 util-linux=2.36.1-3 xml-core=0.18+nmu1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201228T023115Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d python-gsd=2.4.0-1 && mkdir -p /build/python-gsd-OnRE2l && dpkg-source --no-check -x /*.dsc /build/python-gsd-OnRE2l/python-gsd-2.4.0 && chown -R builduser:builduser /build/python-gsd-OnRE2l" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-gsd-OnRE2l/python-gsd-2.4.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609131986" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/python-gsd-OnRE2l /tmp/python-gsd-2.4.0-1othdajbb bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201228T023115Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.LDD0lAV9TZ as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.LDD0lAV9TZ Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-3). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201228T023115Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201228T023115Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (628 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4619 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-6) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201228T023115Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.LDD0lAV9TZ Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20201228T023115Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 22s (1038 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.LDD0lAV9TZ I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d python-gsd=2.4.0-1 && mkdir -p /build/python-gsd-OnRE2l && dpkg-source --no-check -x /*.dsc /build/python-gsd-OnRE2l/python-gsd-2.4.0 && chown -R builduser:builduser /build/python-gsd-OnRE2l"' exec /tmp/mmdebstrap.LDD0lAV9TZ Reading package lists... NOTICE: 'python-gsd' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/python-gsd.git Please use: git clone https://salsa.debian.org/debichem-team/python-gsd.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 119 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-gsd 2.4.0-1 (dsc) [2276 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-gsd 2.4.0-1 (tar) [113 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-gsd 2.4.0-1 (diff) [4244 B] Fetched 119 kB in 0s (626 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'python-gsd_2.4.0-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting python-gsd in /build/python-gsd-OnRE2l/python-gsd-2.4.0 dpkg-source: info: unpacking python-gsd_2.4.0.orig.tar.gz dpkg-source: info: unpacking python-gsd_2.4.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying intersphinx_local.patch dpkg-source: info: applying test_large_32bit.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-gsd-OnRE2l/python-gsd-2.4.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609131986" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.LDD0lAV9TZ dpkg-buildpackage: info: source package python-gsd dpkg-buildpackage: info: source version 2.4.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-source: info: using options from python-gsd-2.4.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean Compiling gsd/fl.pyx because it changed. [1/1] Cythonizing gsd/fl.pyx running clean removing '/build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/python-gsd-OnRE2l/python-gsd-2.4.0' dh_clean rm -f gsd/fl.c || /bin/true make[1]: Leaving directory '/build/python-gsd-OnRE2l/python-gsd-2.4.0' debian/rules binary-indep dh binary-indep --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config Compiling gsd/fl.pyx because it changed. [1/1] Cythonizing gsd/fl.pyx running config debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/python-gsd-OnRE2l/python-gsd-2.4.0' dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd copying gsd/pygsd.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd copying gsd/__init__.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd copying gsd/hoomd.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd copying gsd/__main__.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd copying gsd/version.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd package init file 'gsd/test/__init__.py' not found (or not a regular file) creating /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/test copying gsd/test/test_largefile.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/test copying gsd/test/test_fl.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/test copying gsd/test/test_hoomd.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/test copying gsd/test/conftest.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/test copying gsd/test/test_gsd_v1.gsd -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/test running build_ext building 'gsd.fl' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/gsd x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-gsd-OnRE2l/python-gsd-2.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I./gsd -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gsd/fl.c -o build/temp.linux-x86_64-3.9/gsd/fl.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-gsd-OnRE2l/python-gsd-2.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I./gsd -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gsd/gsd.c -o build/temp.linux-x86_64-3.9/gsd/gsd.o gsd/gsd.c: In function ‘gsd_expand_file_index’: gsd/gsd.c:982:44: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 982 | if (bytes_read == -1 || bytes_read != bytes_to_copy) | ^~ gsd/gsd.c:993:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 993 | if (bytes_written == -1 || bytes_written != bytes_to_copy) | ^~ gsd/gsd.c:1019:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1019 | if (bytes_written == -1 || bytes_written != bytes_to_copy) | ^~ gsd/gsd.c: In function ‘gsd_flush_write_buffer’: gsd/gsd.c:1107:46: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1107 | if (bytes_written == -1 || bytes_written != handle->write_buffer.size) | ^~ gsd/gsd.c: In function ‘gsd_flush_name_buffer’: gsd/gsd.c:1199:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1199 | if (bytes_written == -1 || bytes_written != handle->file_names.data.reserved) | ^~ gsd/gsd.c:1232:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1232 | if (bytes_written != (handle->file_names.data.reserved - old_size)) | ^~ gsd/gsd.c: In function ‘gsd_initialize_handle’: gsd/gsd.c:1468:40: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1468 | if (bytes_read == -1 || bytes_read != namelist_n_bytes) | ^~ gsd/gsd.c: In function ‘gsd_end_frame’: gsd/gsd.c:1894:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1894 | if (bytes_written == -1 || bytes_written != bytes_to_write) | ^~ gsd/gsd.c: In function ‘gsd_write_chunk’: gsd/gsd.c:2017:50: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2017 | if (bytes_written == -1 || bytes_written != size) | ^~ gsd/gsd.c: In function ‘gsd_read_chunk’: gsd/gsd.c:2169:40: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2169 | if (bytes_read == -1 || bytes_read != size) | ^~ gsd/gsd.c: In function ‘gsd_upgrade’: gsd/gsd.c:2345:54: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 2345 | if (bytes_written == -1 || bytes_written != sizeof(struct gsd_index_entry) * buf.size) | ^~ gsd/gsd.c:2400:54: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2400 | if (bytes_written == -1 || bytes_written != new_name_buf.reserved) | ^~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/python-gsd-OnRE2l/python-gsd-2.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/gsd/fl.o build/temp.linux-x86_64-3.9/gsd/gsd.o -o /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/fl.cpython-39-x86_64-linux-gnu.so PYTHONPATH=/build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build make html -C doc/ BUILDDIR=/build/python-gsd-OnRE2l/python-gsd-2.4.0/build/html # HTML generator make[2]: Entering directory '/build/python-gsd-OnRE2l/python-gsd-2.4.0/doc' sphinx-build -b html -d /build/python-gsd-OnRE2l/python-gsd-2.4.0/build/html/doctrees -a -n -W . /build/python-gsd-OnRE2l/python-gsd-2.4.0/build/html/html Running Sphinx v3.4.1 making output directory... done loading intersphinx inventory from /usr/share/doc/python3/html/objects.inv... loading intersphinx inventory from /usr/share/doc/python-numpy-doc/html/objects.inv... building [mo]: all of 0 po files building [html]: all source files updating environment: [new config] 21 added, 0 changed, 0 removed reading sources... [ 4%] c-api reading sources... [ 9%] changes reading sources... [ 14%] cli reading sources... [ 19%] community reading sources... [ 23%] contributing reading sources... [ 28%] credits reading sources... [ 33%] file-layer reading sources... [ 38%] fl-examples /usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 42%] hoomd-examples implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/invalid reading sources... [ 47%] index reading sources... [ 52%] indices reading sources... [ 57%] installation reading sources... [ 61%] license reading sources... [ 66%] python-api reading sources... [ 71%] python-module-gsd.fl reading sources... [ 76%] python-module-gsd.hoomd reading sources... [ 80%] python-module-gsd.pygsd reading sources... [ 85%] schema-hoomd reading sources... [ 90%] shapes reading sources... [ 95%] specification reading sources... [100%] style looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 4%] c-api writing output... [ 9%] changes writing output... [ 14%] cli writing output... [ 19%] community writing output... [ 23%] contributing writing output... [ 28%] credits writing output... [ 33%] file-layer writing output... [ 38%] fl-examples writing output... [ 42%] hoomd-examples writing output... [ 47%] index writing output... [ 52%] indices writing output... [ 57%] installation writing output... [ 61%] license writing output... [ 66%] python-api writing output... [ 71%] python-module-gsd.fl writing output... [ 76%] python-module-gsd.hoomd writing output... [ 80%] python-module-gsd.pygsd writing output... [ 85%] schema-hoomd writing output... [ 90%] shapes writing output... [ 95%] specification writing output... [100%] style generating indices... genindex py-modindex done writing additional pages... search done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in ../build/html/html. Build finished. The HTML pages are in /build/python-gsd-OnRE2l/python-gsd-2.4.0/build/html/html. make[2]: Leaving directory '/build/python-gsd-OnRE2l/python-gsd-2.4.0/doc' make[1]: Leaving directory '/build/python-gsd-OnRE2l/python-gsd-2.4.0' dh_auto_test -i -O--buildsystem=pybuild I: pybuild base:232: cd /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build; python3.9 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild dh_auto_install -i -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd running install running build running build_py package init file 'gsd/test/__init__.py' not found (or not a regular file) running build_ext running install_lib creating /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd creating /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr creating /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib creating /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9 creating /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages creating /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/fl.cpython-39-x86_64-linux-gnu.so -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/pygsd.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/__init__.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/hoomd.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd creating /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/test/test_largefile.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/test/test_fl.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/test/test_hoomd.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/test/test_gsd_v1.gsd -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/test/conftest.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/__main__.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd creating /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__pycache__ copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/__pycache__/version.cpython-39.pyc -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__pycache__ copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/__pycache__/hoomd.cpython-39.pyc -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__pycache__ copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/__pycache__/__main__.cpython-39.pyc -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__pycache__ copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/__pycache__/pygsd.cpython-39.pyc -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__pycache__ copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/__pycache__/__init__.cpython-39.pyc -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__pycache__ copying /build/python-gsd-OnRE2l/python-gsd-2.4.0/.pybuild/cpython3_3.9_gsd/build/gsd/version.py -> /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd byte-compiling /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/pygsd.py to pygsd.cpython-39.pyc byte-compiling /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/hoomd.py to hoomd.cpython-39.pyc byte-compiling /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test/test_largefile.py to test_largefile.cpython-39.pyc byte-compiling /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test/test_fl.py to test_fl.cpython-39.pyc byte-compiling /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test/test_hoomd.py to test_hoomd.cpython-39.pyc byte-compiling /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/test/conftest.py to conftest.cpython-39.pyc byte-compiling /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/__main__.py to __main__.cpython-39.pyc byte-compiling /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd/version.py to version.cpython-39.pyc running install_egg_info running egg_info creating gsd.egg-info writing gsd.egg-info/PKG-INFO writing dependency_links to gsd.egg-info/dependency_links.txt writing entry points to gsd.egg-info/entry_points.txt writing requirements to gsd.egg-info/requires.txt writing top-level names to gsd.egg-info/top_level.txt writing manifest file 'gsd.egg-info/SOURCES.txt' reading manifest file 'gsd.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'ChangeLog.md' writing manifest file 'gsd.egg-info/SOURCES.txt' Copying gsd.egg-info to /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/lib/python3.9/dist-packages/gsd-2.4.0.egg-info Skipping SOURCES.txt running install_scripts Installing gsd script to /build/python-gsd-OnRE2l/python-gsd-2.4.0/debian/python3-gsd/usr/bin dh_installdocs -i -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-gsd-doc. If the default is wrong, please use --doc-main-package debian/rules override_dh_sphinxdoc-indep make[1]: Entering directory '/build/python-gsd-OnRE2l/python-gsd-2.4.0' dh_sphinxdoc -i dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-gsd-doc/usr/share/doc/python-gsd-doc/html/_static/js/html5shiv.min.js grep "https://cdnjs.cloudflare.com/ajax/libs/mathjax/.*/latest.js" debian/python-gsd-doc/usr/share/doc/python-gsd-doc/* -r --files-with-matches | xargs sed "s|src=\"https://cdnjs.cloudflare.com/ajax/libs/mathjax/.*/latest.js|src=\"file://usr/share/javascript/mathjax/unpacked/latest.js|g" -i make[1]: Leaving directory '/build/python-gsd-OnRE2l/python-gsd-2.4.0' dh_installchangelogs -i -O--buildsystem=pybuild dh_installman -i -O--buildsystem=pybuild dh_python3 -i -O--buildsystem=pybuild E: dh_python3 dh_python3:176: no package to act on (python3-foo or one with ${python3:Depends} in Depends) dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild dh_fixperms -i -O--buildsystem=pybuild dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-gsd-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'python-gsd-doc' in '../python-gsd-doc_2.4.0-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../python-gsd_2.4.0-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-source: info: using options from python-gsd-2.4.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/python-gsd-OnRE2l /tmp/python-gsd-2.4.0-1othdajbb I: cleaning package lists and apt cache... W: deleting files in /tmp: tmpwck5noiz I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.LDD0lAV9TZ... I: success in 537.5384 seconds md5: Value of 'md5' differs for python-gsd-doc_2.4.0-1_all.deb md5: Size differs for python-gsd-doc_2.4.0-1_all.deb sha1: Value of 'sha1' differs for python-gsd-doc_2.4.0-1_all.deb sha1: Size differs for python-gsd-doc_2.4.0-1_all.deb sha256: Value of 'sha256' differs for python-gsd-doc_2.4.0-1_all.deb sha256: Size differs for python-gsd-doc_2.4.0-1_all.deb Checksums: FAIL diffoscope run passed