Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/python-gffutils/python-gffutils_0.10.1-2_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/python-gffutils-0.10.1-2xawcdrc5/python-gffutils_0.10.1-2_all.buildinfo Get source package info: python-gffutils=0.10.1-2 Source URL: http://snapshot.notset.fr/mr/package/python-gffutils/0.10.1-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.1-4 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-5 bedtools=2.29.2+dfsg-3 binutils=2.34-2 binutils-common=2.34-2 binutils-x86-64-linux-gnu=2.34-2 bsdmainutils=11.1.2+b1 bsdutils=1:2.34-0.1 build-essential=12.8 bzip2=1.0.8-2 coreutils=8.30-3+b1 cpp=4:9.2.1-3.1 cpp-9=9.2.1-28 dash=0.5.10.2-6 debconf=1.5.73 debhelper=12.9 debianutils=4.9.1 dh-autoreconf=19 dh-python=4.20191017 dh-strip-nondeterminism=1.6.3-2 diffutils=1:3.7-3 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-5 fdisk=2.34-0.1 file=1:5.38-4 findutils=4.7.0-1 g++=4:9.2.1-3.1 g++-9=9.2.1-28 gcc=4:9.2.1-3.1 gcc-10-base=10-20200211-1 gcc-9=9.2.1-28 gcc-9-base=9.2.1-28 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.4-1 groff-base=1.22.4-4 gzip=1.9-3+b1 help2man=1.47.12 hostname=3.23 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-5 libarchive-zip-perl=1.67-1 libasan5=9.2.1-28 libatomic1=10-20200211-1 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-2 libaudit1=1:2.8.5-2+b1 libbinutils=2.34-2 libblas3=3.9.0-1 libblkid1=2.34-0.1 libbrotli1=1.0.7-6 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-2 libc-bin=2.29-10 libc-dev-bin=2.29-10 libc6=2.29-10 libc6-dev=2.29-10 libcap-ng0=0.7.9-2.1+b1 libcc1-0=10-20200211-1 libcom-err2=1.45.5-2 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.10-10 libcrypt1=1:4.4.10-10 libctf-nobfd0=2.34-2 libctf0=2.34-2 libcurl3-gnutls=7.67.0-2 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.251 libdebhelper-perl=12.9 libdeflate0=1.5-3 libdpkg-perl=1.19.7 libelf1=0.176-1.1 libexpat1=2.2.9-1 libfdisk1=2.34-0.1 libffi7=3.3-3 libfile-stripnondeterminism-perl=1.6.3-2 libfreetype6=2.10.1-2 libgcc-9-dev=9.2.1-28 libgcc-s1=10-20200211-1 libgcc1=1:10-20200211-1 libgcrypt20=1.8.5-3 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libgfortran5=10-20200211-1 libglib2.0-0=2.62.4-2 libgmp10=2:6.2.0+dfsg-3 libgnutls30=3.6.12-2 libgomp1=10-20200211-1 libgpg-error0=1.37-1 libgssapi-krb5-2=1.17-6 libhogweed5=3.5.1+really3.5.1-2 libhts3=1.10.2-3 libicu63=63.2-2 libidn2-0=2.2.0-2 libimagequant0=2.12.2-1.1 libisl22=0.22-2 libitm1=10-20200211-1 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:1.5.2-2+b1 libk5crypto3=1.17-6 libkeyutils1=1.6.1-2 libkrb5-3=1.17-6 libkrb5support0=1.17-6 liblapack3=3.9.0-1 liblcms2-2=2.9-4 libldap-2.4-2=2.4.49+dfsg-1 libldap-common=2.4.49+dfsg-1 liblocale-gettext-perl=1.07-4 liblsan0=10-20200211-1 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-4 libmagic1=1:5.38-4 libmount1=2.34-0.1 libmpc3=1.1.0-1 libmpdec2=2.4.2-2 libmpfr6=4.0.2-1 libncursesw6=6.1+20191019-1 libnettle7=3.5.1+really3.5.1-2 libnghttp2-14=1.40.0-1 libp11-kit0=0.23.20-1 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.34-7 libpcre3=2:8.39-12+b1 libperl5.30=5.30.0-9 libpipeline1=1.5.2-2 libpng16-16=1.6.37-2 libpsl5=0.20.2-2 libpython3-stdlib=3.7.5-3 libpython3.7-minimal=3.7.6-1+b1 libpython3.7-stdlib=3.7.6-1+b1 libpython3.8-minimal=3.8.2~rc1-1 libpython3.8-stdlib=3.8.2~rc1-1 libquadmath0=10-20200211-1 libreadline8=8.0-3 librtmp1=2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.4.2-2 libselinux1=3.0-1 libsigsegv2=2.12-2 libsmartcols1=2.34-0.1 libsqlite3-0=3.31.1-2 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1d-2 libstdc++-9-dev=9.2.1-28 libstdc++6=10-20200211-1 libsub-override-perl=0.09-2 libsystemd0=244.3-1 libtasn1-6=4.16.0-2 libtiff5=4.1.0+git191117-2 libtinfo6=6.1+20191019-1 libtool=2.4.6-13 libtsan0=10-20200211-1 libubsan1=10-20200211-1 libuchardet0=0.0.6-3 libudev1=244.3-1 libunistring2=0.9.10-2 libuuid1=2.34-0.1 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libxml2=2.9.4+dfsg1-8 libzstd1=1.4.4+dfsg-3 linux-libc-dev=5.4.19-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.2.1-1.2 man-db=2.9.0-2 mawk=1.3.4.20200120-1 mime-support=3.64 ncurses-base=6.1+20191019-1 ncurses-bin=6.1+20191019-1 patch=2.7.6-6 perl=5.30.0-9 perl-base=5.30.0-9 perl-modules-5.30=5.30.0-9 po-debconf=1.0.21 python3=3.7.5-3 python3-all=3.7.5-3 python3-argcomplete=1.8.1-1.3 python3-argh=0.26.2-1.1 python3-biopython=1.76+dfsg-1 python3-distutils=3.8.0-1 python3-lib2to3=3.8.0-1 python3-minimal=3.7.5-3 python3-nose=1.3.7-5 python3-numpy=1:1.17.4-5 python3-pil=7.0.0-4 python3-pkg-resources=44.0.0-1 python3-pybedtools=0.8.0-3 python3-pyfaidx=0.5.8-2 python3-pysam=0.15.4+ds-1 python3-reportlab=3.5.34-1 python3-reportlab-accel=3.5.34-1 python3-setuptools=44.0.0-1 python3-simplejson=3.16.0-2+b1 python3-six=1.14.0-2 python3.7=3.7.6-1+b1 python3.7-minimal=3.7.6-1+b1 python3.8=3.8.2~rc1-1 python3.8-minimal=3.8.2~rc1-1 readline-common=8.0-3 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-2.1 tar=1.30+dfsg-6+b1 util-linux=2.34-0.1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-1.2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200216T205511Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d python-gffutils=0.10.1-2 && mkdir -p /build/python-gffutils-QMHGoV && dpkg-source --no-check -x /*.dsc /build/python-gffutils-QMHGoV/python-gffutils-0.10.1 && chown -R builduser:builduser /build/python-gffutils-QMHGoV" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-gffutils-QMHGoV/python-gffutils-0.10.1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1582018712" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/python-gffutils-QMHGoV /tmp/python-gffutils-0.10.1-2xawcdrc5 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200216T205511Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.V_d19oUhgw as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.V_d19oUhgw Reading package lists... Building dependency tree... util-linux is already the newest version (2.34-0.1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200216T205511Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200216T205511Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (699 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4509 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.29-10) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200216T205511Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.V_d19oUhgw Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20200216T205511Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 24s (941 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.V_d19oUhgw I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d python-gffutils=0.10.1-2 && mkdir -p /build/python-gffutils-QMHGoV && dpkg-source --no-check -x /*.dsc /build/python-gffutils-QMHGoV/python-gffutils-0.10.1 && chown -R builduser:builduser /build/python-gffutils-QMHGoV"' exec /tmp/mmdebstrap.V_d19oUhgw Reading package lists... NOTICE: 'python-gffutils' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-gffutils.git Please use: git clone https://salsa.debian.org/med-team/python-gffutils.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1550 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-gffutils 0.10.1-2 (dsc) [2331 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-gffutils 0.10.1-2 (tar) [1542 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-gffutils 0.10.1-2 (diff) [4996 B] Fetched 1550 kB in 1s (1073 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'python-gffutils_0.10.1-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting python-gffutils in /build/python-gffutils-QMHGoV/python-gffutils-0.10.1 dpkg-source: info: unpacking python-gffutils_0.10.1.orig.tar.gz dpkg-source: info: unpacking python-gffutils_0.10.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying newer_bedtools dpkg-source: info: applying python3 dpkg-source: info: applying 99ba2581a184a6660ee6d8d8b6a422cd298eeee4.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-gffutils-QMHGoV/python-gffutils-0.10.1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1582018712" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.V_d19oUhgw dpkg-buildpackage: info: source package python-gffutils dpkg-buildpackage: info: source version 0.10.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python3.8 setup.py clean running clean removing '/build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build-indep dh build-indep --with python3 --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:217: python3.8 setup.py config running config I: pybuild base:217: python3.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-gffutils-QMHGoV/python-gffutils-0.10.1' dh_auto_build I: pybuild base:217: /usr/bin/python3.8 setup.py build running build running build_py creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/biopython_integration.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/create.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/parser.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/interface.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/feature.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/__init__.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/convert.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/attributes.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/pybedtools_integration.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/gffwriter.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/bins.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/inspect.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/iterators.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/constants.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/exceptions.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/helpers.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/version.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils copying gffutils/merge_criteria.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils package init file 'gffutils/scripts/__init__.py' not found (or not a regular file) creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/scripts copying gffutils/scripts/gffutils-flybase-convert.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/scripts creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test copying gffutils/test/performance_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test copying gffutils/test/__init__.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test copying gffutils/test/synth_test_base.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test copying gffutils/test/test_biopython_integration.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test copying gffutils/test/helpers_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test copying gffutils/test/feature_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test copying gffutils/test/attr_test_cases.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test copying gffutils/test/parser_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test copying gffutils/test/expected.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test copying gffutils/test/test_merge.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test copying gffutils/test/test_merge_all.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test copying gffutils/test/test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test package init file 'gffutils/test/data/__init__.py' not found (or not a regular file) creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/jgi_gff2.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/nonascii -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/keyval_sep_in_attrs.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/hybrid1.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/keep-order-test.gtf -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/wormbase_gff2_alt.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/download-large-annotation-files.sh -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/ncbi_gff3.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/ensembl_gtf.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/gff_example1.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/glimmer_nokeyval.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/random-chr.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/unsanitized.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode-v19.gtf -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/F3-unique-3.v2.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/mouse_extra_comma.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/synthetic.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/intro_docs_example.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/gff_example1.gff3.gz -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/wormbase_gff2.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data running build_scripts creating build creating build/scripts-3.8 copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.8 changing mode of build/scripts-3.8/gffutils-cli from 644 to 755 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/biopython_integration.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/create.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/parser.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/interface.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/feature.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/__init__.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/convert.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/attributes.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/pybedtools_integration.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/gffwriter.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/bins.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/inspect.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/iterators.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/constants.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/exceptions.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/helpers.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/version.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils copying gffutils/merge_criteria.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils package init file 'gffutils/scripts/__init__.py' not found (or not a regular file) creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/scripts copying gffutils/scripts/gffutils-flybase-convert.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/scripts creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test copying gffutils/test/performance_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test copying gffutils/test/__init__.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test copying gffutils/test/synth_test_base.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test copying gffutils/test/test_biopython_integration.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test copying gffutils/test/helpers_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test copying gffutils/test/feature_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test copying gffutils/test/attr_test_cases.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test copying gffutils/test/parser_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test copying gffutils/test/expected.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test copying gffutils/test/test_merge.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test copying gffutils/test/test_merge_all.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test copying gffutils/test/test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test package init file 'gffutils/test/data/__init__.py' not found (or not a regular file) creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/jgi_gff2.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/nonascii -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/keyval_sep_in_attrs.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/hybrid1.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/keep-order-test.gtf -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/wormbase_gff2_alt.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/download-large-annotation-files.sh -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/ncbi_gff3.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/ensembl_gtf.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/gff_example1.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/glimmer_nokeyval.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/random-chr.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/unsanitized.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode-v19.gtf -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/F3-unique-3.v2.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/mouse_extra_comma.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/synthetic.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/intro_docs_example.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/gff_example1.gff3.gz -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/wormbase_gff2.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data running build_scripts creating build/scripts-3.7 copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.7 changing mode of build/scripts-3.7/gffutils-cli from 644 to 755 PYTHONPATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1 PATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin \ help2man --version-string=0.10.1 --no-info \ --name="Command line interface for python-gffutils." \ gffutils-cli > debian/gffutils-cli.1 PYTHONPATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1 PATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_fetch \- Fetch IDs") \ 'gffutils-cli fetch' > debian/gffutils-cli-fetch.1 PYTHONPATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1 PATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_children \- Fetch children from the database according to ID") \ 'gffutils-cli children' > debian/gffutils-cli-children.1 PYTHONPATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1 PATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_parents \- Fetch parents from the database according to ID") \ 'gffutils-cli parents' > debian/gffutils-cli-parents.1 PYTHONPATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1 PATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_region \- Returns features within provided genomic coordinates") \ 'gffutils-cli region' > debian/gffutils-cli-region.1 PYTHONPATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1 PATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_create \- Create a database") \ 'gffutils-cli create' > debian/gffutils-cli-create.1 PYTHONPATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1 PATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_common \- Identify child features in common") \ 'gffutils-cli common' > debian/gffutils-cli-common.1 PYTHONPATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1 PATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_clean \- Perform various QC operations to clean a GFF or GTF file") \ 'gffutils-cli clean' > debian/gffutils-cli-clean.1 PYTHONPATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1 PATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_sanitize \- Sanitize a GFF file") \ 'gffutils-cli sanitize' > debian/gffutils-cli-sanitize.1 PYTHONPATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1 PATH=/build/python-gffutils-QMHGoV/python-gffutils-0.10.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin \ help2man --version-string=0.10.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_rmdups \- Remove duplicates from a GFF file") \ 'gffutils-cli rmdups' > debian/gffutils-cli-rmdups.1 make[1]: Leaving directory '/build/python-gffutils-QMHGoV/python-gffutils-0.10.1' dh_auto_test -i -O--buildsystem=pybuild I: pybuild base:217: cd /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build; python3.8 -m nose -v --with-doctest -a '!slow' Doctest: gffutils.attributes.Attributes.__init__ ... ok Doctest: gffutils.pybedtools_integration.tsses ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) /usr/lib/python3.8/subprocess.py:849: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stderr = io.open(errread, 'rb', bufsize) /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) /usr/lib/python3.8/subprocess.py:849: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stderr = io.open(errread, 'rb', bufsize) /usr/lib/python3.8/subprocess.py:849: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stderr = io.open(errread, 'rb', bufsize) /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) /usr/lib/python3.8/subprocess.py:849: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stderr = io.open(errread, 'rb', bufsize) /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) /usr/lib/python3.8/subprocess.py:849: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stderr = io.open(errread, 'rb', bufsize) /usr/lib/python3.8/subprocess.py:849: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stderr = io.open(errread, 'rb', bufsize) /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) /usr/lib/python3.8/subprocess.py:849: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stderr = io.open(errread, 'rb', bufsize) /usr/lib/python3.8/subprocess.py:849: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stderr = io.open(errread, 'rb', bufsize) /usr/lib/python3.8/subprocess.py:849: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stderr = io.open(errread, 'rb', bufsize) ok gffutils.test.feature_test.test_feature_from_line ... ok gffutils.test.feature_test.test_default_feature ... ok gffutils.test.feature_test.test_attributes_representations ... ok gffutils.test.feature_test.test_default_start_stop ... ok gffutils.test.feature_test.test_aliases ... ok gffutils.test.feature_test.test_string_representation ... ok gffutils.test.feature_test.test_pbt_interval_conversion ... ok gffutils.test.feature_test.test_hash ... ok gffutils.test.feature_test.test_repr ... ok gffutils.test.feature_test.test_attribute_order ... ok gffutils.test.feature_test.test_unjsonify ... ok test_merge_Attributes (gffutils.test.helpers_test.Test) ... ok Tests all possible cases of merging two dictionaries together ... ok gffutils.test.parser_test.test_directives ... ok gffutils.test.parser_test.test_split_attrs('count=1;gene=amx-2;sequence=SAGE:ggcagagtcttttggca;transcript=B0019.1', {'count': ['1'], 'gene': ['amx-2'], 'sequence': ['SAGE:ggcagagtcttttggca'], 'transcript': ['B0019.1']}, None) ... ok gffutils.test.parser_test.test_split_attrs('gene_id "Y74C9A.6"; transcript_id "Y74C9A.6"; exon_number "1"; gene_name "Y74C9A.6"; transcript_name "NR_001477.2";', {'gene_id': ['Y74C9A.6'], 'transcript_id': ['Y74C9A.6'], 'exon_number': ['1'], 'gene_name': ['Y74C9A.6'], 'transcript_name': ['NR_001477.2']}, None) ... ok gffutils.test.parser_test.test_split_attrs('g=A3233312322232122211;i=1;p=1.000;q=23,12,18,17,10,24,19,14,27,9,23,9,16,20,11,7,8,4,4,14;u=0,0,0,1', {'g': ['A3233312322232122211'], 'i': ['1'], 'p': ['1.000'], 'q': ['23', '12', '18', '17', '10', '24', '19', '14', '27', '9', '23', '9', '16', '20', '11', '7', '8', '4', '4', '14'], 'u': ['0', '0', '0', '1']}, None) ... ok gffutils.test.parser_test.test_split_attrs("ID=GL0000006;Name=GL0000006;Lack 3'-end;", {'ID': ['GL0000006'], 'Name': ['GL0000006'], "Lack 3'-end": []}, None) ... ok gffutils.test.parser_test.test_split_attrs('ID=A00469;Dbxref=AFFX-U133:205840_x_at,Locuslink:2688,Genbank-mRNA:A00469,Swissprot:P01241,PFAM:PF00103,AFFX-U95:1332_f_at,Swissprot:SOMA_HUMAN;Note=growth%20hormone%201;Alias=GH1', {'ID': ['A00469'], 'Dbxref': ['AFFX-U133:205840_x_at', 'Locuslink:2688', 'Genbank-mRNA:A00469', 'Swissprot:P01241', 'PFAM:PF00103', 'AFFX-U95:1332_f_at', 'Swissprot:SOMA_HUMAN'], 'Note': ['growth hormone 1'], 'Alias': ['GH1']}, 'ID=A00469;Dbxref=AFFX-U133:205840_x_at,Locuslink:2688,Genbank-mRNA:A00469,Swissprot:P01241,PFAM:PF00103,AFFX-U95:1332_f_at,Swissprot:SOMA_HUMAN;Note=growth hormone 1;Alias=GH1') ... ok gffutils.test.parser_test.test_split_attrs('name "fgenesh1_pg.C_chr_1000007"; transcriptId 873', {'name': ['fgenesh1_pg.C_chr_1000007'], 'transcriptId': ['873']}, 'name "fgenesh1_pg.C_chr_1000007"; transcriptId "873"') ... ok gffutils.test.parser_test.test_split_attrs('Name=CDS:NC_000083.5:LOC100040603;Parent=XM_001475631.1,', {'Name': ['CDS:NC_000083.5:LOC100040603'], 'Parent': ['XM_001475631.1', '']}, None) ... ok gffutils.test.parser_test.test_split_attrs('ID=;Parent=XM_001475631.1', {'ID': [], 'Parent': ['XM_001475631.1']}, 'ID;Parent=XM_001475631.1') ... ok gffutils.test.parser_test.test_split_attrs('ID=NC_008596.1:speB:unknown_transcript_1;Parent=NC_008596.1:speB;locus_tag=MSMEG_1072;EC_number=3.5.3.11;note=identified%20by%20match%20to%20protein%20family%20HMM%20PF00491%3B%20match%20to%20protein%20family%20HMM%20TIGR01230;transl_table=11;product=agmatinase;protein_id=YP_885468.1;db_xref=GI:118469242;db_xref=GeneID:4535378;exon_number=1', {'ID': ['NC_008596.1:speB:unknown_transcript_1'], 'Parent': ['NC_008596.1:speB'], 'locus_tag': ['MSMEG_1072'], 'EC_number': ['3.5.3.11'], 'note': ['identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230'], 'transl_table': ['11'], 'product': ['agmatinase'], 'protein_id': ['YP_885468.1'], 'db_xref': ['GI:118469242', 'GeneID:4535378'], 'exon_number': ['1']}, 'ID=NC_008596.1:speB:unknown_transcript_1;Parent=NC_008596.1:speB;locus_tag=MSMEG_1072;EC_number=3.5.3.11;note=identified by match to protein family HMM PF00491%3B match to protein family HMM TIGR01230;transl_table=11;product=agmatinase;protein_id=YP_885468.1;db_xref=GI:118469242;db_xref=GeneID:4535378;exon_number=1') ... ok gffutils.test.parser_test.test_split_attrs('CDS "cr01.sctg102.wum.2.1"', {'CDS': ['cr01.sctg102.wum.2.1']}, None) ... ok Just confirm we can iterate completely through the test files.... ... ok reconstructing attributes with incomplete information returns empty string ... ok gffutils.test.parser_test.test_empty_split_keyvals ... ok if dialect says repeated keys, but len(vals) > 1, then the keys are not ... ok make sure from string and from file return identical results ... ok gffutils.test.parser_test.test_valid_line_count ... ok The second feature does not have a trailing semicolon (wormbase_gff2_alt is ... /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/create.py:733: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation warnings.warn( ok gffutils.test.parser_test.test_attributes ... ok gffutils.test.test.TestGFFClass.featurecount_test ... ok gffutils.test.test.TestGFFClass.table_test ... ok gffutils.test.test.TestGFFClass.test_bed12 ... ok gffutils.test.test.TestGFFClass.test_parents_level_1 ... ok gffutils.test.test.TestGFFClass.test_parents_level_2 ... ok gffutils.test.test.TestGTFClass.featurecount_test ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok gffutils.test.test.TestGTFClass.table_test ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok gffutils.test.test.TestGTFClass.test_bed12 ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok gffutils.test.test.TestGTFClass.test_parents_level_1 ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok gffutils.test.test.TestGTFClass.test_parents_level_2 ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok gffutils.test.test.test_update ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok Test on GFF files with random chromosome events. ... ok Test GFFWriter. ... ok Test creation of FeatureDB from iterator. ... ok Test sanitization of GFF. Should be merged with GFF cleaning ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'start': 1, 'end': 2000000000.0, 'completely_within': True}, 27),) ... ok gffutils.test.test.test_region(({'region': 'chr2L', 'start': 0}, ),) ... ok gffutils.test.test.test_region(({'region': 'chr2L', 'end': 0}, ),) ... ok gffutils.test.test.test_region(({'region': 'chr2L', 'seqid': 0}, ),) ... ok gffutils.test.test.test_region(({'region': 'chr2L:7529-12500'}, 27),) ... ok gffutils.test.test.test_region(({'region': 'chr2L:7529-12500', 'strand': '.'}, 0),) ... ok gffutils.test.test.test_region(({'region': 'chr2L:7529-12500', 'strand': '+'}, 21),) ... ok gffutils.test.test.test_region(({'region': 'chr2L:7529-12500', 'strand': '-'}, 6),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'start': 11500, 'featuretype': 'exon'}, 1),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'start': 9500, 'featuretype': 'exon', 'strand': '+'}, 1),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'start': 7529, 'end': 12500}, 27),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'start': 7680}, 26),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'start': 7680, 'completely_within': True}, 22),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'end': 7680}, 5),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'end': 7680, 'completely_within': True}, 1),) ... ok gffutils.test.test.test_region(({'region': 'chr2L'}, 27),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L'}, 27),) ... ok gffutils.test.test.test_region(({'region': 'nowhere'}, 0),) ... ok gffutils.test.test.test_nonascii ... ok gffutils.test.test.test_feature_merge ... ok gffutils.test.test.test_add_relation ... ok Test creation of FeatureDB from URL iterator. ... 127.0.0.1 - - [10/Oct/2021 12:11:10] "GET /gff_example1.gff3 HTTP/1.1" 200 - 127.0.0.1 - - [10/Oct/2021 12:11:10] "GET /gff_example1.gff3.gz HTTP/1.1" 200 - ok gffutils.test.test.test_empty_files ... ok gffutils.test.test.test_false_function ... ok gffutils.test.test.test_inspect ... ok gffutils.test.test.test_delete ... ok gffutils.test.test.test_iterator_update ... ok gffutils.test.test.test_tempfiles ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 0 of 8 (0%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 0 of 8 (0%) 4 of 8 (50%) 1 of 8 (12%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 0 of 8 (0%) 2 of 8 (25%) 3 of 8 (37%) 1 of 8 (12%) 2 of 8 (25%) 4 of 8 (50%) 3 of 8 (37%) 5 of 8 (62%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 1 of 8 (12%) 3 of 8 (37%) 2 of 8 (25%) 4 of 8 (50%) 3 of 8 (37%) 5 of 8 (62%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 1 of 8 (12%) 3 of 8 (37%) 2 of 8 (25%) 4 of 8 (50%) 3 of 8 (37%) 5 of 8 (62%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 0 of 8 (0%) 2 of 8 (25%) 1 of 8 (12%) 3 of 8 (37%) 1 of 8 (12%) 2 of 8 (25%) 4 of 8 (50%) 2 of 8 (25%) 3 of 8 (37%) 5 of 8 (62%) 4 of 8 (50%) 3 of 8 (37%) 6 of 8 (75%) 5 of 8 (62%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 0 of 8 (0%) 0 of 8 (0%) 5 of 8 (62%) 1 of 8 (12%) 6 of 8 (75%) 0 of 8 (0%) 2 of 8 (25%) 1 of 8 (12%) 3 of 8 (37%) 2 of 8 (25%) 4 of 8 (50%) 1 of 8 (12%) 5 of 8 (62%) 2 of 8 (25%) 3 of 8 (37%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 4 of 8 (50%) 5 of 8 (62%) 1 of 8 (12%) 6 of 8 (75%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 4 of 8 (50%) 1 of 8 (12%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 3 of 8 (37%) 2 of 8 (25%) 4 of 8 (50%) 5 of 8 (62%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 3 of 8 (37%) 5 of 8 (62%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 0 of 8 (0%) 2 of 8 (25%) 5 of 8 (62%) 3 of 8 (37%) 6 of 8 (75%) 1 of 8 (12%) 4 of 8 (50%) 2 of 8 (25%) 5 of 8 (62%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 0 of 8 (0%) 2 of 8 (25%) 2 of 8 (25%) 1 of 8 (12%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 2 of 8 (25%) 4 of 8 (50%) 5 of 8 (62%) 3 of 8 (37%) 5 of 8 (62%) 6 of 8 (75%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 0 of 8 (0%) 2 of 8 (25%) 1 of 8 (12%) 3 of 8 (37%) 4 of 8 (50%) 2 of 8 (25%) 5 of 8 (62%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 1 of 8 (12%) 3 of 8 (37%) 2 of 8 (25%) 4 of 8 (50%) 3 of 8 (37%) 3 of 8 (37%) 5 of 8 (62%) 4 of 8 (50%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 0 of 8 (0%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok tests the new semantics for disabling gene/transcript inference ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/create.py:733: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation warnings.warn( 0 of 4 (0%) 1 of 4 (25%) 2 of 4 (50%) /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/create.py:724: UserWarning: It appears you have a transcript feature in your GTF file. You may want to use the `disable_infer_transcripts=True` option to speed up database creation warnings.warn( 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 7 of 8 (87%) ok gffutils.test.test.test_deprecation_handler ... ok gffutils.test.test.test_nonsense_kwarg ... ok gffutils.test.test.test_infer_gene_extent ... ok gffutils.test.test.test_issue_79 ... 0 of 2 (0%) 1 of 2 (50%) ok gffutils.test.test.test_for_analyze ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok gffutils.test.test.test_issue_82 ... ok gffutils.test.test.test_sequence ... ok gffutils.test.test.test_issue_85 ... ok gffutils.test.test.test_unquoting ... ok gffutils.test.test.test_unreasonable_unquoting ... ok gffutils.test.test.test_unquoting_iter ... ok gffutils.test.test.test_db_unquoting ... ok gffutils.test.test.test_issue_107 ... ok gffutils.test.test.test_issue_119 ... ok gffutils.test.test.test_pr_131 ... ok gffutils.test.test.test_pr_133 ... ok gffutils.test.test.test_pr_139 ... ok gffutils.test.test.test_pr_144 ... ok gffutils.test.test.test_issue_105 ... ok Feature -> SeqFeature -> Feature should be invariant. ... ok test_adjacent_len1 (gffutils.test.test_merge.TestMerge) ... ok test_any_overlap (gffutils.test.test_merge.TestMerge) ... ok test_defaults (gffutils.test.test_merge.TestMerge) ... ok test_end_overlap (gffutils.test.test_merge.TestMerge) ... ok test_no_overlap (gffutils.test.test_merge.TestMerge) ... ok test_none (gffutils.test.test_merge.TestMerge) ... ok test_one (gffutils.test.test_merge.TestMerge) ... ok test_overlap (gffutils.test.test_merge.TestMerge) ... ok test_perfect_overlap (gffutils.test.test_merge.TestMerge) ... ok test_defaults (gffutils.test.test_merge_all.TestMerge_all) ... ok test_empty (gffutils.test.test_merge_all.TestMerge_all) ... ok test_exclude_components (gffutils.test.test_merge_all.TestMerge_all) ... ok test_merge_groups (gffutils.test.test_merge_all.TestMerge_all) ... ok test_no_overlap (gffutils.test.test_merge_all.TestMerge_all) ... ok test_one (gffutils.test.test_merge_all.TestMerge_all) ... ok ---------------------------------------------------------------------- Ran 113 tests in 5.542s OK I: pybuild pybuild:298: find . -name tmp.db -delete I: pybuild base:217: cd /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build; python3.7 -m nose -v --with-doctest -a '!slow' Doctest: gffutils.attributes.Attributes.__init__ ... ok Doctest: gffutils.pybedtools_integration.tsses ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok gffutils.test.feature_test.test_feature_from_line ... ok gffutils.test.feature_test.test_default_feature ... ok gffutils.test.feature_test.test_attributes_representations ... ok gffutils.test.feature_test.test_default_start_stop ... ok gffutils.test.feature_test.test_aliases ... ok gffutils.test.feature_test.test_string_representation ... ok gffutils.test.feature_test.test_pbt_interval_conversion ... ok gffutils.test.feature_test.test_hash ... ok gffutils.test.feature_test.test_repr ... ok gffutils.test.feature_test.test_attribute_order ... ok gffutils.test.feature_test.test_unjsonify ... ok test_merge_Attributes (gffutils.test.helpers_test.Test) ... ok Tests all possible cases of merging two dictionaries together ... ok gffutils.test.parser_test.test_directives ... ok gffutils.test.parser_test.test_split_attrs('count=1;gene=amx-2;sequence=SAGE:ggcagagtcttttggca;transcript=B0019.1', {'count': ['1'], 'gene': ['amx-2'], 'sequence': ['SAGE:ggcagagtcttttggca'], 'transcript': ['B0019.1']}, None) ... ok gffutils.test.parser_test.test_split_attrs('gene_id "Y74C9A.6"; transcript_id "Y74C9A.6"; exon_number "1"; gene_name "Y74C9A.6"; transcript_name "NR_001477.2";', {'gene_id': ['Y74C9A.6'], 'transcript_id': ['Y74C9A.6'], 'exon_number': ['1'], 'gene_name': ['Y74C9A.6'], 'transcript_name': ['NR_001477.2']}, None) ... ok gffutils.test.parser_test.test_split_attrs('g=A3233312322232122211;i=1;p=1.000;q=23,12,18,17,10,24,19,14,27,9,23,9,16,20,11,7,8,4,4,14;u=0,0,0,1', {'g': ['A3233312322232122211'], 'i': ['1'], 'p': ['1.000'], 'q': ['23', '12', '18', '17', '10', '24', '19', '14', '27', '9', '23', '9', '16', '20', '11', '7', '8', '4', '4', '14'], 'u': ['0', '0', '0', '1']}, None) ... ok gffutils.test.parser_test.test_split_attrs("ID=GL0000006;Name=GL0000006;Lack 3'-end;", {'ID': ['GL0000006'], 'Name': ['GL0000006'], "Lack 3'-end": []}, None) ... ok gffutils.test.parser_test.test_split_attrs('ID=A00469;Dbxref=AFFX-U133:205840_x_at,Locuslink:2688,Genbank-mRNA:A00469,Swissprot:P01241,PFAM:PF00103,AFFX-U95:1332_f_at,Swissprot:SOMA_HUMAN;Note=growth%20hormone%201;Alias=GH1', {'ID': ['A00469'], 'Dbxref': ['AFFX-U133:205840_x_at', 'Locuslink:2688', 'Genbank-mRNA:A00469', 'Swissprot:P01241', 'PFAM:PF00103', 'AFFX-U95:1332_f_at', 'Swissprot:SOMA_HUMAN'], 'Note': ['growth hormone 1'], 'Alias': ['GH1']}, 'ID=A00469;Dbxref=AFFX-U133:205840_x_at,Locuslink:2688,Genbank-mRNA:A00469,Swissprot:P01241,PFAM:PF00103,AFFX-U95:1332_f_at,Swissprot:SOMA_HUMAN;Note=growth hormone 1;Alias=GH1') ... ok gffutils.test.parser_test.test_split_attrs('name "fgenesh1_pg.C_chr_1000007"; transcriptId 873', {'name': ['fgenesh1_pg.C_chr_1000007'], 'transcriptId': ['873']}, 'name "fgenesh1_pg.C_chr_1000007"; transcriptId "873"') ... ok gffutils.test.parser_test.test_split_attrs('Name=CDS:NC_000083.5:LOC100040603;Parent=XM_001475631.1,', {'Name': ['CDS:NC_000083.5:LOC100040603'], 'Parent': ['XM_001475631.1', '']}, None) ... ok gffutils.test.parser_test.test_split_attrs('ID=;Parent=XM_001475631.1', {'ID': [], 'Parent': ['XM_001475631.1']}, 'ID;Parent=XM_001475631.1') ... ok gffutils.test.parser_test.test_split_attrs('ID=NC_008596.1:speB:unknown_transcript_1;Parent=NC_008596.1:speB;locus_tag=MSMEG_1072;EC_number=3.5.3.11;note=identified%20by%20match%20to%20protein%20family%20HMM%20PF00491%3B%20match%20to%20protein%20family%20HMM%20TIGR01230;transl_table=11;product=agmatinase;protein_id=YP_885468.1;db_xref=GI:118469242;db_xref=GeneID:4535378;exon_number=1', {'ID': ['NC_008596.1:speB:unknown_transcript_1'], 'Parent': ['NC_008596.1:speB'], 'locus_tag': ['MSMEG_1072'], 'EC_number': ['3.5.3.11'], 'note': ['identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230'], 'transl_table': ['11'], 'product': ['agmatinase'], 'protein_id': ['YP_885468.1'], 'db_xref': ['GI:118469242', 'GeneID:4535378'], 'exon_number': ['1']}, 'ID=NC_008596.1:speB:unknown_transcript_1;Parent=NC_008596.1:speB;locus_tag=MSMEG_1072;EC_number=3.5.3.11;note=identified by match to protein family HMM PF00491%3B match to protein family HMM TIGR01230;transl_table=11;product=agmatinase;protein_id=YP_885468.1;db_xref=GI:118469242;db_xref=GeneID:4535378;exon_number=1') ... ok gffutils.test.parser_test.test_split_attrs('CDS "cr01.sctg102.wum.2.1"', {'CDS': ['cr01.sctg102.wum.2.1']}, None) ... ok Just confirm we can iterate completely through the test files.... ... ok reconstructing attributes with incomplete information returns empty string ... ok gffutils.test.parser_test.test_empty_split_keyvals ... ok if dialect says repeated keys, but len(vals) > 1, then the keys are not ... ok make sure from string and from file return identical results ... ok gffutils.test.parser_test.test_valid_line_count ... ok The second feature does not have a trailing semicolon (wormbase_gff2_alt is ... /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/create.py:734: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation "It appears you have a gene feature in your GTF " ok gffutils.test.parser_test.test_attributes ... ok gffutils.test.test.TestGFFClass.featurecount_test ... ok gffutils.test.test.TestGFFClass.table_test ... ok gffutils.test.test.TestGFFClass.test_bed12 ... ok gffutils.test.test.TestGFFClass.test_parents_level_1 ... ok gffutils.test.test.TestGFFClass.test_parents_level_2 ... ok gffutils.test.test.TestGTFClass.featurecount_test ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok gffutils.test.test.TestGTFClass.table_test ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok gffutils.test.test.TestGTFClass.test_bed12 ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok gffutils.test.test.TestGTFClass.test_parents_level_1 ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok gffutils.test.test.TestGTFClass.test_parents_level_2 ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok gffutils.test.test.test_update ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok Test on GFF files with random chromosome events. ... ok Test GFFWriter. ... ok Test creation of FeatureDB from iterator. ... ok Test sanitization of GFF. Should be merged with GFF cleaning ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'start': 1, 'end': 2000000000.0, 'completely_within': True}, 27),) ... ok gffutils.test.test.test_region(({'region': 'chr2L', 'start': 0}, ),) ... ok gffutils.test.test.test_region(({'region': 'chr2L', 'end': 0}, ),) ... ok gffutils.test.test.test_region(({'region': 'chr2L', 'seqid': 0}, ),) ... ok gffutils.test.test.test_region(({'region': 'chr2L:7529-12500'}, 27),) ... ok gffutils.test.test.test_region(({'region': 'chr2L:7529-12500', 'strand': '.'}, 0),) ... ok gffutils.test.test.test_region(({'region': 'chr2L:7529-12500', 'strand': '+'}, 21),) ... ok gffutils.test.test.test_region(({'region': 'chr2L:7529-12500', 'strand': '-'}, 6),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'start': 11500, 'featuretype': 'exon'}, 1),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'start': 9500, 'featuretype': 'exon', 'strand': '+'}, 1),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'start': 7529, 'end': 12500}, 27),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'start': 7680}, 26),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'start': 7680, 'completely_within': True}, 22),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'end': 7680}, 5),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L', 'end': 7680, 'completely_within': True}, 1),) ... ok gffutils.test.test.test_region(({'region': 'chr2L'}, 27),) ... ok gffutils.test.test.test_region(({'seqid': 'chr2L'}, 27),) ... ok gffutils.test.test.test_region(({'region': 'nowhere'}, 0),) ... ok gffutils.test.test.test_nonascii ... ok gffutils.test.test.test_feature_merge ... ok gffutils.test.test.test_add_relation ... ok Test creation of FeatureDB from URL iterator. ... 127.0.0.1 - - [10/Oct/2021 12:11:17] "GET /gff_example1.gff3 HTTP/1.1" 200 - 127.0.0.1 - - [10/Oct/2021 12:11:17] "GET /gff_example1.gff3.gz HTTP/1.1" 200 - ok gffutils.test.test.test_empty_files ... ok gffutils.test.test.test_false_function ... ok gffutils.test.test.test_inspect ... ok gffutils.test.test.test_delete ... ok gffutils.test.test.test_iterator_update ... ok gffutils.test.test.test_tempfiles ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 0 of 8 (0%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 4 of 8 (50%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 5 of 8 (62%) 3 of 8 (37%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 2 of 8 (25%) 5 of 8 (62%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 1 of 8 (12%) 5 of 8 (62%) 4 of 8 (50%) 2 of 8 (25%) 6 of 8 (75%) 5 of 8 (62%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 2 of 8 (25%) 5 of 8 (62%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 2 of 8 (25%) 5 of 8 (62%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 3 of 8 (37%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 4 of 8 (50%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 4 of 8 (50%) 0 of 8 (0%) 2 of 8 (25%) 1 of 8 (12%) 3 of 8 (37%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 5 of 8 (62%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 1 of 8 (12%) 2 of 8 (25%) 2 of 8 (25%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 4 of 8 (50%) 1 of 8 (12%) 2 of 8 (25%) 5 of 8 (62%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 0 of 8 (0%) 2 of 8 (25%) 0 of 8 (0%) 0 of 8 (0%) 3 of 8 (37%) 1 of 8 (12%) 1 of 8 (12%) 4 of 8 (50%) 1 of 8 (12%) 5 of 8 (62%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 1 of 8 (12%) 0 of 8 (0%) 0 of 8 (0%) 2 of 8 (25%) 1 of 8 (12%) 1 of 8 (12%) 3 of 8 (37%) 2 of 8 (25%) 2 of 8 (25%) 4 of 8 (50%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 2 of 8 (25%) 2 of 8 (25%) 6 of 8 (75%) 3 of 8 (37%) 3 of 8 (37%) 4 of 8 (50%) 4 of 8 (50%) 5 of 8 (62%) 5 of 8 (62%) 6 of 8 (75%) 6 of 8 (75%) 4 of 8 (50%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 4 of 8 (50%) 0 of 8 (0%) 5 of 8 (62%) 1 of 8 (12%) 6 of 8 (75%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 4 of 8 (50%) 1 of 8 (12%) 2 of 8 (25%) 5 of 8 (62%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 2 of 8 (25%) 4 of 8 (50%) 3 of 8 (37%) 5 of 8 (62%) 4 of 8 (50%) 6 of 8 (75%) 6 of 8 (75%) 5 of 8 (62%) 1 of 8 (12%) 6 of 8 (75%) 2 of 8 (25%) 0 of 8 (0%) 3 of 8 (37%) 1 of 8 (12%) 4 of 8 (50%) 2 of 8 (25%) 0 of 8 (0%) 5 of 8 (62%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 3 of 8 (37%) 6 of 8 (75%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 4 of 8 (50%) 0 of 8 (0%) 5 of 8 (62%) 1 of 8 (12%) 6 of 8 (75%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok tests the new semantics for disabling gene/transcript inference ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/create.py:734: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation "It appears you have a gene feature in your GTF " 0 of 4 (0%) 1 of 4 (25%) 2 of 4 (50%) /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/create.py:725: UserWarning: It appears you have a transcript feature in your GTF file. You may want to use the `disable_infer_transcripts=True` option to speed up database creation "It appears you have a transcript feature in your GTF " 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) 7 of 8 (87%) ok gffutils.test.test.test_deprecation_handler ... ok gffutils.test.test.test_nonsense_kwarg ... ok gffutils.test.test.test_infer_gene_extent ... ok gffutils.test.test.test_issue_79 ... 0 of 2 (0%) 1 of 2 (50%) ok gffutils.test.test.test_for_analyze ... 0 of 8 (0%) 1 of 8 (12%) 2 of 8 (25%) 3 of 8 (37%) 4 of 8 (50%) 5 of 8 (62%) 6 of 8 (75%) ok gffutils.test.test.test_issue_82 ... ok gffutils.test.test.test_sequence ... ok gffutils.test.test.test_issue_85 ... ok gffutils.test.test.test_unquoting ... ok gffutils.test.test.test_unreasonable_unquoting ... ok gffutils.test.test.test_unquoting_iter ... ok gffutils.test.test.test_db_unquoting ... ok gffutils.test.test.test_issue_107 ... ok gffutils.test.test.test_issue_119 ... ok gffutils.test.test.test_pr_131 ... ok gffutils.test.test.test_pr_133 ... ok gffutils.test.test.test_pr_139 ... ok gffutils.test.test.test_pr_144 ... ok gffutils.test.test.test_issue_105 ... ok Feature -> SeqFeature -> Feature should be invariant. ... ok test_adjacent_len1 (gffutils.test.test_merge.TestMerge) ... ok test_any_overlap (gffutils.test.test_merge.TestMerge) ... ok test_defaults (gffutils.test.test_merge.TestMerge) ... ok test_end_overlap (gffutils.test.test_merge.TestMerge) ... ok test_no_overlap (gffutils.test.test_merge.TestMerge) ... ok test_none (gffutils.test.test_merge.TestMerge) ... ok test_one (gffutils.test.test_merge.TestMerge) ... ok test_overlap (gffutils.test.test_merge.TestMerge) ... ok test_perfect_overlap (gffutils.test.test_merge.TestMerge) ... ok test_defaults (gffutils.test.test_merge_all.TestMerge_all) ... ok test_empty (gffutils.test.test_merge_all.TestMerge_all) ... ok test_exclude_components (gffutils.test.test_merge_all.TestMerge_all) ... ok test_merge_groups (gffutils.test.test_merge_all.TestMerge_all) ... ok test_no_overlap (gffutils.test.test_merge_all.TestMerge_all) ... ok test_one (gffutils.test.test_merge_all.TestMerge_all) ... ok ---------------------------------------------------------------------- Ran 113 tests in 6.345s OK I: pybuild pybuild:298: find . -name tmp.db -delete create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-indep dh binary-indep --with python3 --buildsystem=pybuild dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild dh_auto_install -i -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3.8 setup.py install --root /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils running install running build running build_py package init file 'gffutils/scripts/__init__.py' not found (or not a regular file) package init file 'gffutils/test/data/__init__.py' not found (or not a regular file) running build_scripts running install_lib creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8 creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/biopython_integration.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/create.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/parser.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/interface.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/feature.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__init__.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/convert.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/performance_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/__init__.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/synth_test_base.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/test_biopython_integration.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/helpers_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/feature_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/attr_test_cases.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/parser_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/expected.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/jgi_gff2.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/nonascii -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/keyval_sep_in_attrs.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/hybrid1.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/keep-order-test.gtf -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/dm6-chr2L.fa -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/wormbase_gff2_alt.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/download-large-annotation-files.sh -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/FBgn0031208.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/ncbi_gff3.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/ensembl_gtf.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/gff_example1.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/glimmer_nokeyval.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/random-chr.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/dm6-chr2L.fa.fai -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/unsanitized.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/gencode-v19.gtf -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/F3-unique-3.v2.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/mouse_extra_comma.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/synthetic.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/intro_docs_example.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/gff_example1.gff3.gz -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/wormbase_gff2.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/data/FBgn0031208.gtf -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/test_merge.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/__pycache__/helpers_test.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/__pycache__/feature_test.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/__pycache__/test.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/__pycache__/__init__.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/__pycache__/test_merge_all.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/__pycache__/performance_test.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/__pycache__/test_biopython_integration.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/__pycache__/synth_test_base.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/__pycache__/test_merge.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/__pycache__/attr_test_cases.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/__pycache__/expected.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/__pycache__/parser_test.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/test_merge_all.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/test/test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/attributes.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/pybedtools_integration.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/gffwriter.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/bins.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/inspect.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/iterators.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/constants.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/exceptions.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/helpers.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/helpers.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/create.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/parser.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/__init__.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/inspect.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/attributes.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/exceptions.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/constants.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/gffwriter.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/pybedtools_integration.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/merge_criteria.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/bins.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/feature.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/convert.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/biopython_integration.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/interface.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/iterators.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/__pycache__/version.cpython-38.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/version.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/merge_criteria.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/scripts copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.8_gffutils/build/gffutils/scripts/gffutils-flybase-convert.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/scripts byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/biopython_integration.py to biopython_integration.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/create.py to create.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/parser.py to parser.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/interface.py to interface.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/feature.py to feature.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/convert.py to convert.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/performance_test.py to performance_test.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/synth_test_base.py to synth_test_base.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/test_biopython_integration.py to test_biopython_integration.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/helpers_test.py to helpers_test.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/feature_test.py to feature_test.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/attr_test_cases.py to attr_test_cases.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/parser_test.py to parser_test.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/expected.py to expected.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/test_merge.py to test_merge.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/test_merge_all.py to test_merge_all.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/test/test.py to test.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/attributes.py to attributes.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/pybedtools_integration.py to pybedtools_integration.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/gffwriter.py to gffwriter.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/bins.py to bins.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/inspect.py to inspect.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/iterators.py to iterators.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/constants.py to constants.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/exceptions.py to exceptions.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/helpers.py to helpers.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/version.py to version.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/merge_criteria.py to merge_criteria.cpython-38.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils/scripts/gffutils-flybase-convert.py to gffutils-flybase-convert.cpython-38.pyc running install_egg_info running egg_info writing gffutils.egg-info/PKG-INFO writing dependency_links to gffutils.egg-info/dependency_links.txt writing requirements to gffutils.egg-info/requires.txt writing top-level names to gffutils.egg-info/top_level.txt reading manifest file 'gffutils.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.rst' under directory 'docs/source' warning: no files found matching '*.py' under directory 'docs/source' warning: no files found matching '*' under directory 'docs/source/images' warning: no files found matching 'docs/Makefile' warning: no files found matching 'docs/make.bat' warning: no files found matching 'gffutils/test/data/__init__.py' warning: no files found matching 'gffutils/test/data/t.py' writing manifest file 'gffutils.egg-info/SOURCES.txt' Copying gffutils.egg-info to /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.8/dist-packages/gffutils-0.10.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/bin copying build/scripts-3.8/gffutils-cli -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/bin changing mode of /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/bin/gffutils-cli to 755 I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils running install running build running build_py package init file 'gffutils/scripts/__init__.py' not found (or not a regular file) package init file 'gffutils/test/data/__init__.py' not found (or not a regular file) running build_scripts running install_lib creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7 creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/biopython_integration.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/create.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/parser.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/interface.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/feature.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__init__.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/convert.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/performance_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/__init__.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/synth_test_base.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/test_biopython_integration.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/helpers_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/feature_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/attr_test_cases.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/parser_test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/expected.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/jgi_gff2.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/nonascii -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/keyval_sep_in_attrs.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/hybrid1.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/keep-order-test.gtf -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/dm6-chr2L.fa -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/wormbase_gff2_alt.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/download-large-annotation-files.sh -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/FBgn0031208.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/ncbi_gff3.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/ensembl_gtf.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/gff_example1.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/glimmer_nokeyval.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/random-chr.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/dm6-chr2L.fa.fai -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/unsanitized.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/gencode-v19.gtf -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/F3-unique-3.v2.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/mouse_extra_comma.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/synthetic.gff3 -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/intro_docs_example.gff -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/gff_example1.gff3.gz -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/wormbase_gff2.txt -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/data/FBgn0031208.gtf -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/data copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/test_merge.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/__pycache__/parser_test.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/__pycache__/test_merge.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/__pycache__/feature_test.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/__pycache__/attr_test_cases.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/__pycache__/test_merge_all.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/__pycache__/test_biopython_integration.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/__pycache__/performance_test.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/__pycache__/helpers_test.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/__pycache__/test.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/__pycache__/synth_test_base.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/__pycache__/__init__.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/__pycache__/expected.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/test_merge_all.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/test/test.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/attributes.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/pybedtools_integration.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/gffwriter.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/bins.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/inspect.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/iterators.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/constants.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/exceptions.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/helpers.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/feature.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/iterators.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/bins.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/inspect.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/attributes.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/merge_criteria.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/parser.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/pybedtools_integration.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/gffwriter.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/exceptions.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/biopython_integration.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/helpers.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/create.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/convert.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/interface.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/constants.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/__init__.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/__pycache__/version.cpython-37.pyc -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/version.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/merge_criteria.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils creating /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/scripts copying /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/.pybuild/cpython3_3.7_gffutils/build/gffutils/scripts/gffutils-flybase-convert.py -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/scripts byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/biopython_integration.py to biopython_integration.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/create.py to create.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/parser.py to parser.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/interface.py to interface.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/feature.py to feature.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/convert.py to convert.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/performance_test.py to performance_test.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/synth_test_base.py to synth_test_base.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/test_biopython_integration.py to test_biopython_integration.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/helpers_test.py to helpers_test.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/feature_test.py to feature_test.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/attr_test_cases.py to attr_test_cases.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/parser_test.py to parser_test.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/expected.py to expected.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/test_merge.py to test_merge.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/test_merge_all.py to test_merge_all.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/test/test.py to test.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/attributes.py to attributes.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/pybedtools_integration.py to pybedtools_integration.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/gffwriter.py to gffwriter.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/bins.py to bins.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/inspect.py to inspect.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/iterators.py to iterators.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/constants.py to constants.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/exceptions.py to exceptions.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/helpers.py to helpers.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/version.py to version.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/merge_criteria.py to merge_criteria.cpython-37.pyc byte-compiling /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils/scripts/gffutils-flybase-convert.py to gffutils-flybase-convert.cpython-37.pyc running install_egg_info running egg_info writing gffutils.egg-info/PKG-INFO writing dependency_links to gffutils.egg-info/dependency_links.txt writing requirements to gffutils.egg-info/requires.txt writing top-level names to gffutils.egg-info/top_level.txt reading manifest file 'gffutils.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.rst' under directory 'docs/source' warning: no files found matching '*.py' under directory 'docs/source' warning: no files found matching '*' under directory 'docs/source/images' warning: no files found matching 'docs/Makefile' warning: no files found matching 'docs/make.bat' warning: no files found matching 'gffutils/test/data/__init__.py' warning: no files found matching 'gffutils/test/data/t.py' writing manifest file 'gffutils.egg-info/SOURCES.txt' Copying gffutils.egg-info to /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/lib/python3.7/dist-packages/gffutils-0.10.1.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.7/gffutils-cli -> /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/bin changing mode of /build/python-gffutils-QMHGoV/python-gffutils-0.10.1/debian/python3-gffutils/usr/bin/gffutils-cli to 755 dh_installdocs -i -O--buildsystem=pybuild dh_installchangelogs -i -O--buildsystem=pybuild dh_installman -i -O--buildsystem=pybuild dh_python3 -i -O--buildsystem=pybuild dh_installinit -i -O--buildsystem=pybuild dh_installsystemduser -i -O--buildsystem=pybuild dh_lintian -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild dh_fixperms -i -O--buildsystem=pybuild dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'python3-gffutils' in '../python3-gffutils_0.10.1-2_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../python-gffutils_0.10.1-2_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/python-gffutils-QMHGoV /tmp/python-gffutils-0.10.1-2xawcdrc5 I: cleaning package lists and apt cache... W: deleting files in /tmp: tmpja1n5asl.db.bak W: deleting files in /tmp: tmpvzjy_w_0 W: deleting files in /tmp: tmpv_cjc7yv W: deleting files in /tmp: tmp5l1ozzap W: deleting files in /tmp: tmp_uyc1gxf W: deleting files in /tmp: tmpu9mrl2y2.db W: deleting files in /tmp: tmp02t9qs0c W: deleting files in /tmp: tmpnoepkn4q W: deleting files in /tmp: tmpja1n5asl W: deleting files in /tmp: tmppjkl7ftn.db W: deleting files in /tmp: tmpu9mrl2y2 W: deleting files in /tmp: tmpja1n5asl.db W: deleting files in /tmp: tmp4kkcuk21 W: deleting files in /tmp: gffutils-test W: deleting files in /tmp: tmpz8o9w15x W: deleting files in /tmp: tmpxzaha3g1 W: deleting files in /tmp: tmppjkl7ftn W: deleting files in /tmp: tmp06jm1jig W: deleting files in /tmp: tmpxxt1b0c3.db W: deleting files in /tmp: tmpknzn73uv W: deleting files in /tmp: tmpo7twkfq5 W: deleting files in /tmp: tmp6c98g4wu W: deleting files in /tmp: tmpjprj1i2u W: deleting files in /tmp: tmps632x9uk W: deleting files in /tmp: tmpu9mrl2y2.db.bak W: deleting files in /tmp: tmpabwpp4rl W: deleting files in /tmp: tmpcn9o40yy W: deleting files in /tmp: tmpxjjo_apz W: deleting files in /tmp: tmpxxt1b0c3 I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.V_d19oUhgw... I: success in 450.5862 seconds md5: python3-gffutils_0.10.1-2_all.deb: OK sha1: python3-gffutils_0.10.1-2_all.deb: OK sha256: python3-gffutils_0.10.1-2_all.deb: OK Checksums: OK