Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/python-dicompylercore/python-dicompylercore_0.5.5-2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/python-dicompylercore-0.5.5-2vfdonkx0/python-dicompylercore_0.5.5-2_amd64.buildinfo Get source package info: python-dicompylercore=0.5.5-2 Source URL: http://snapshot.notset.fr/mr/package/python-dicompylercore/0.5.5-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.1-4 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-5 binutils=2.33.90.20200122-2 binutils-common=2.33.90.20200122-2 binutils-x86-64-linux-gnu=2.33.90.20200122-2 bsdmainutils=11.1.2+b1 bsdutils=1:2.34-0.1 build-essential=12.8 bzip2=1.0.8-2 coreutils=8.30-3+b1 cpp=4:9.2.1-3.1 cpp-9=9.2.1-24 dash=0.5.10.2-6 debconf=1.5.73 debhelper=12.8 debianutils=4.9.1 dh-autoreconf=19 dh-python=4.20191017 dh-strip-nondeterminism=1.6.3-2 diffutils=1:3.7-3 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-5 fdisk=2.34-0.1 file=1:5.38-4 findutils=4.7.0-1 fonts-lyx=2.3.3-3 g++=4:9.2.1-3.1 g++-9=9.2.1-24 gcc=4:9.2.1-3.1 gcc-9=9.2.1-24 gcc-9-base=9.2.1-24 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.3-1 groff-base=1.22.4-4 gzip=1.9-3+b1 hostname=3.23 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-5 libarchive-zip-perl=1.67-1 libasan5=9.2.1-24 libatomic1=9.2.1-24 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-2 libaudit1=1:2.8.5-2+b1 libbinutils=2.33.90.20200122-2 libblas3=3.9.0-1 libblkid1=2.34-0.1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-2 libc-bin=2.29-9 libc-dev-bin=2.29-9 libc6=2.29-9 libc6-dev=2.29-9 libcap-ng0=0.7.9-2.1+b1 libcc1-0=9.2.1-24 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.10-10 libcrypt1=1:4.4.10-10 libctf-nobfd0=2.33.90.20200122-2 libctf0=2.33.90.20200122-2 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.250 libdebhelper-perl=12.8 libdpkg-perl=1.19.7 libelf1=0.176-1.1 libexpat1=2.2.9-1 libfdisk1=2.34-0.1 libffi7=3.3-3 libfile-stripnondeterminism-perl=1.6.3-2 libfreetype6=2.10.1-2 libgcc-9-dev=9.2.1-24 libgcc1=1:9.2.1-24 libgcrypt20=1.8.5-3 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libgeos-3.8.0=3.8.0-1 libgeos-c1v5=3.8.0-1 libgfortran5=9.2.1-24 libglib2.0-0=2.62.4-1+b1 libgmp10=2:6.1.2+dfsg-4 libgomp1=9.2.1-24 libgpg-error0=1.36-7 libicu63=63.2-2 libimagequant0=2.12.2-1.1 libisl22=0.22-2 libitm1=9.2.1-24 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:1.5.2-2+b1 libjs-jquery=3.3.1~dfsg-3 libjs-jquery-ui=1.12.1+dfsg-5 liblapack3=3.9.0-1 liblbfgsb0=3.0+dfsg.3-7 liblcms2-2=2.9-4 liblsan0=9.2.1-24 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-4 libmagic1=1:5.38-4 libmount1=2.34-0.1 libmpc3=1.1.0-1 libmpdec2=2.4.2-2 libmpfr6=4.0.2-1 libncursesw6=6.1+20191019-1 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.34-7 libpcre3=2:8.39-12+b1 libperl5.30=5.30.0-9 libpipeline1=1.5.2-2 libpng16-16=1.6.37-1 libpython3-stdlib=3.7.5-3 libpython3.7-minimal=3.7.6-1+b1 libpython3.7-stdlib=3.7.6-1+b1 libpython3.8-minimal=3.8.1-2+b1 libpython3.8-stdlib=3.8.1-2+b1 libquadmath0=9.2.1-24 libreadline8=8.0-3 libseccomp2=2.4.2-2 libselinux1=3.0-1 libsigsegv2=2.12-2 libsmartcols1=2.34-0.1 libsqlite3-0=3.31.0-1 libssl1.1=1.1.1d-2 libstdc++-9-dev=9.2.1-24 libstdc++6=9.2.1-24 libsub-override-perl=0.09-2 libsystemd0=244-3 libtiff5=4.1.0+git191117-2 libtinfo6=6.1+20191019-1 libtool=2.4.6-11 libtsan0=9.2.1-24 libubsan1=9.2.1-24 libuchardet0=0.0.6-3 libudev1=244-3 libunistring2=0.9.10-2 libuuid1=2.34-0.1 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libxml2=2.9.4+dfsg1-8 libzstd1=1.4.4+dfsg-1 linux-libc-dev=5.4.13-1 login=1:4.8-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.2.1-1.2 man-db=2.9.0-2 mawk=1.3.3-20 mime-support=3.64 ncurses-base=6.1+20191019-1 ncurses-bin=6.1+20191019-1 patch=2.7.6-6 perl=5.30.0-9 perl-base=5.30.0-9 perl-modules-5.30=5.30.0-9 po-debconf=1.0.21 python-matplotlib-data=3.1.2-1 python3=3.7.5-3 python3-cycler=0.10.0-2 python3-dateutil=2.7.3-3 python3-decorator=4.3.0-1.1 python3-distutils=3.8.0-1 python3-imageio=2.4.1-3 python3-kiwisolver=1.0.1-2+b2 python3-lib2to3=3.8.0-1 python3-matplotlib=3.1.2-1 python3-minimal=3.7.5-3 python3-networkx=2.4-3 python3-numpy=1:1.17.4-5 python3-pil=7.0.0-3 python3-pkg-resources=44.0.0-1 python3-pydicom=1.4.1-1 python3-pyparsing=2.4.2-1 python3-pywt=0.5.1-1.3 python3-scipy=1.3.3-3 python3-setuptools=44.0.0-1 python3-shapely=1.6.4-5 python3-six=1.14.0-2 python3-skimage=0.16.2-2 python3-skimage-lib=0.16.2-2 python3.7=3.7.6-1+b1 python3.7-minimal=3.7.6-1+b1 python3.8=3.8.1-2+b1 python3.8-minimal=3.8.1-2+b1 readline-common=8.0-3 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-2.1 tar=1.30+dfsg-6+b1 ttf-bitstream-vera=1.10-8 tzdata=2019c-3 util-linux=2.34-0.1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-1+b1 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200123T211024Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d python-dicompylercore=0.5.5-2 && mkdir -p /build/python-dicompylercore-BnzcwV && dpkg-source --no-check -x /*.dsc /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5 && chown -R builduser:builduser /build/python-dicompylercore-BnzcwV" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1579780797" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/python-dicompylercore-BnzcwV /tmp/python-dicompylercore-0.5.5-2vfdonkx0 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200123T211024Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.JzyapIRoNP as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.JzyapIRoNP Reading package lists... Building dependency tree... util-linux is already the newest version (2.34-0.1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200123T211024Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200123T211024Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (677 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4508 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.29-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200123T211024Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.JzyapIRoNP Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20200123T211024Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1145 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.JzyapIRoNP I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d python-dicompylercore=0.5.5-2 && mkdir -p /build/python-dicompylercore-BnzcwV && dpkg-source --no-check -x /*.dsc /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5 && chown -R builduser:builduser /build/python-dicompylercore-BnzcwV"' exec /tmp/mmdebstrap.JzyapIRoNP Reading package lists... NOTICE: 'python-dicompylercore' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-dicompylercore.git Please use: git clone https://salsa.debian.org/med-team/python-dicompylercore.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2717 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-dicompylercore 0.5.5-2 (dsc) [2283 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-dicompylercore 0.5.5-2 (tar) [2712 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-dicompylercore 0.5.5-2 (diff) [2160 B] Fetched 2717 kB in 2s (1210 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'python-dicompylercore_0.5.5-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting python-dicompylercore in /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5 dpkg-source: info: unpacking python-dicompylercore_0.5.5.orig.tar.gz dpkg-source: info: unpacking python-dicompylercore_0.5.5-2.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1579780797" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.JzyapIRoNP dpkg-buildpackage: info: source package python-dicompylercore dpkg-buildpackage: info: source version 0.5.5-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/.pybuild/cpython3_3.7/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build-arch dh build-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/.pybuild/cpython3_3.7/build/dicompylercore copying dicompylercore/__init__.py -> /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/.pybuild/cpython3_3.7/build/dicompylercore copying dicompylercore/dicomparser.py -> /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/.pybuild/cpython3_3.7/build/dicompylercore copying dicompylercore/util.py -> /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/.pybuild/cpython3_3.7/build/dicompylercore copying dicompylercore/dvh.py -> /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/.pybuild/cpython3_3.7/build/dicompylercore copying dicompylercore/config.py -> /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/.pybuild/cpython3_3.7/build/dicompylercore copying dicompylercore/dvhcalc.py -> /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/.pybuild/cpython3_3.7/build/dicompylercore running egg_info creating dicompyler_core.egg-info writing dicompyler_core.egg-info/PKG-INFO writing dependency_links to dicompyler_core.egg-info/dependency_links.txt writing requirements to dicompyler_core.egg-info/requires.txt writing top-level names to dicompyler_core.egg-info/top_level.txt writing manifest file 'dicompyler_core.egg-info/SOURCES.txt' reading manifest file 'dicompyler_core.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: no previously-included files matching '*.DS_Store' found under directory '*' writing manifest file 'dicompyler_core.egg-info/SOURCES.txt' dh_auto_test -a -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py test running test WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. running egg_info writing dicompyler_core.egg-info/PKG-INFO writing dependency_links to dicompyler_core.egg-info/dependency_links.txt writing requirements to dicompyler_core.egg-info/requires.txt writing top-level names to dicompyler_core.egg-info/top_level.txt reading manifest file 'dicompyler_core.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: no previously-included files matching '*.DS_Store' found under directory '*' writing manifest file 'dicompyler_core.egg-info/SOURCES.txt' running build_ext test_absolute_relative_dose_dvh (tests.test_dvh.TestDVH) Test if an absolute and relative dose DVH can be generated. ... ok test_absolute_relative_full_conversion (tests.test_dvh.TestDVH) Test if an abs / relative volume / dose DVH can be generated. ... ok test_absolute_relative_volume_dvh (tests.test_dvh.TestDVH) Test if an absolute and relative volume DVH can be generated. ... ok test_cumulative_dvh (tests.test_dvh.TestDVH) Test if a differential DVH can be converted to a cumulative DVH. ... ok test_differential_dvh (tests.test_dvh.TestDVH) Test if a cumulative DVH can be converted to a differential DVH. ... ok test_dose_constraint_with_no_counts (tests.test_dvh.TestDVH) ... ok test_dose_constraint_with_zero_volume (tests.test_dvh.TestDVH) ... ok test_dvh_compare (tests.test_dvh.TestDVH) Test if the DVH comparsion summary can be generated. ... ok test_dvh_describe (tests.test_dvh.TestDVH) Test if the DVH statistics summary can be generated. ... ok test_dvh_properties (tests.test_dvh.TestDVH) Test if the DVH properties can be derived. ... ok test_dvh_statistics (tests.test_dvh.TestDVH) Test if the DVH statistics can be calculated. ... ok test_dvh_statistics_shorthand (tests.test_dvh.TestDVH) Test if the DVH statistics can be accessed via shorthand. ... ok test_dvh_statistics_shorthand_fail (tests.test_dvh.TestDVH) Test if the DVH statistics shorthand fail on invalid syntaxes. ... ok test_dvh_statistics_with_no_counts (tests.test_dvh.TestDVH) ... ok test_dvh_statistics_with_zero_volume (tests.test_dvh.TestDVH) ... ok test_dvh_value (tests.test_dvh.TestDVH) Test if the DVHValue class works as expected. ... ok test_plotting (tests.test_dvh.TestDVH) Test if the DVH can be plotted. ... ok test_raw_data_dvh (tests.test_dvh.TestDVH) Test if a DVH can be created from raw data. ... ok test_raw_data_dvh_max_bins (tests.test_dvh.TestDVH) Test if a DVH can be created from raw data with [0, 5] bin. ... ok test_dataset_import (tests.test_dicomparser.TestCommon) Test if a pydicom dataset file can be parsed. ... ok test_demographics (tests.test_dicomparser.TestCommon) Test if the demographics info can be parsed. ... ok test_file_import (tests.test_dicomparser.TestCommon) Test if a standard DICOM file can be parsed. ... ok test_frame_of_reference (tests.test_dicomparser.TestCommon) Test if the frame of reference can be parsed. ... ok test_series_info (tests.test_dicomparser.TestCommon) Test if the series info can be parsed. ... ok test_study_info (tests.test_dicomparser.TestCommon) Test if the study info can be parsed. ... ok test_image_data (tests.test_dicomparser.TestImage) Test if the image data info can be parsed. ... ok test_image_generation (tests.test_dicomparser.TestImage) Test if the image can be generated. ... ok test_image_location (tests.test_dicomparser.TestImage) Test if the image location can be parsed. ... ok test_image_orientation (tests.test_dicomparser.TestImage) Test if the image orientation can be parsed. ... ok test_patient_to_pixel_lut (tests.test_dicomparser.TestImage) Test if the image transformation matrix (LUT) can be generated. ... /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/dicompylercore/dicomparser.py:444: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. [0, 0, 0, 1]]) /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/dicompylercore/dicomparser.py:449: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. imat = m * np.matrix([[i], [0], [0], [1]]) /usr/lib/python3/dist-packages/numpy/matrixlib/defmatrix.py:71: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. return matrix(data, dtype=dtype, copy=False) /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/dicompylercore/dicomparser.py:452: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. jmat = m * np.matrix([[0], [j], [0], [1]]) ok test_dose_data (tests.test_dicomparser.TestRTDose) Test if the dose data can be parsed. ... ok test_dose_grid (tests.test_dicomparser.TestRTDose) Test if the dose grid can be parsed. ... ok test_dvh_data (tests.test_dicomparser.TestRTDose) Test if the DVH data can be parsed. ... ok test_has_dvhs (tests.test_dicomparser.TestRTDose) Test if DVHs exist in the dataset. ... ok test_isodose_points (tests.test_dicomparser.TestRTDose) Test if isodose points can be generated from the dose grid. ... ok test_referenced_plan (tests.test_dicomparser.TestRTDose) Test if the referenced plan can be parsed. ... ok test_plan_beams_in_fraction (tests.test_dicomparser.TestRTPlan) Test if beams for a given fraction data can be parsed. ... ok test_plan_data (tests.test_dicomparser.TestRTPlan) Test if the plan data can be parsed. ... ok test_referenced_structureset (tests.test_dicomparser.TestRTPlan) Test if the referenced structure set can be parsed. ... ok test_referenced_frame_of_reference (tests.test_dicomparser.TestRTStructureSet) Test if the referenced frame of reference can be parsed. ... ok test_referenced_series (tests.test_dicomparser.TestRTStructureSet) Test if the referenced series can be parsed. ... ok test_structure_plane_thickness (tests.test_dicomparser.TestRTStructureSet) Test if a structure plane thickness can be parsed. ... ok test_structure_set_coordinates (tests.test_dicomparser.TestRTStructureSet) Test if the structure set coordinates can be parsed. ... ok test_structure_set_data (tests.test_dicomparser.TestRTStructureSet) Test if the structure set data can be parsed. ... ok test_structure_set_info (tests.test_dicomparser.TestRTStructureSet) Test if the structure set info can be parsed. ... ok test_structure_volume (tests.test_dicomparser.TestRTStructureSet) Test if a structure volume can be calculated. ... ok test_structure_volume_holes (tests.test_dicomparser.TestRTStructureSet) Test if a structure volume with holes can be calculated. ... ok test_dvh_calculation (tests.test_dvhcalc.TestDVHCalc) Test if cumulative DVHs can be calculated from the DICOM data. ... ok test_dvh_calculation_empty_structure_no_dose (tests.test_dvhcalc.TestDVHCalc) Test if a DVH returns an empty histogram for invalid data. ... ok test_dvh_calculation_with_dose_limit (tests.test_dvhcalc.TestDVHCalc) Test if a DVH can be calculated with a max dose limit. ... ok test_dvh_calculation_with_interpolation_between_planes (tests.test_dvhcalc.TestDVHCalc) Test if DVH can be calculated using interpolation between planes. ... ok test_dvh_contour_outside_dose_grid (tests.test_dvhcalc.TestDVHCalc) Test if a DVH can be calculated with contours outside a dosegrid. ... Dose plane not found for 180.00. Using -122.4407 to calculate contour volume. Dose plane not found for 180.00. Contours not used for volume calculation. ok test_dvh_with_in_plane_interpolation (tests.test_dvhcalc.TestDVHCalc) Test if DVH can be calculated using in plane interpolation. ... ok test_dvh_with_in_plane_interpolation_sampling_fail (tests.test_dvhcalc.TestDVHCalc) Test if DVH calculation fails when the sampling rate is invalid. ... ok test_dvh_with_structure_extents (tests.test_dvhcalc.TestDVHCalc) Test if DVH calculation is same as normal with structure extents. ... ok test_dvh_with_structure_extents_larger_than_dose_grid (tests.test_dvhcalc.TestDVHCalc) Test DVH calculation using large structure structure extents. ... ok ---------------------------------------------------------------------- Ran 56 tests in 7.586s OK Structure: test test Rel Diff Abs diff ----- DVH Type: cumulative, abs dose: Gy, abs volume: cm3 Volume: 12.81 cm3 12.81 cm3 +0.00 % +0.00 Max: 14.58 Gy 14.58 Gy +0.00 % +0.00 Min: 14.07 Gy 14.07 Gy +0.00 % +0.00 Mean: 14.29 Gy 14.29 Gy +0.00 % +0.00 D100: 14.06 Gy 14.06 Gy +0.00 % +0.00 D98: 14.12 Gy 14.12 Gy +0.00 % +0.00 D95: 14.14 Gy 14.14 Gy +0.00 % +0.00 D2cc: 14.39 Gy 14.39 Gy +0.00 % +0.00 Structure: test test Rel Diff Abs diff ----- DVH Type: cumulative, rel dose, abs volume: cm3 Volume: 12.81 cm3 12.81 cm3 +0.00 % +0.00 Max: 104.14 % 104.14 % +0.00 % +0.00 Min: 100.50 % 100.50 % +0.00 % +0.00 Mean: 102.04 % 102.04 % +0.00 % +0.00 D100: 100.43 % 100.43 % +0.00 % +0.00 D98: 100.86 % 100.86 % +0.00 % +0.00 D95: 101.00 % 101.00 % +0.00 % +0.00 V100: 12.81 % 12.81 % +0.00 % +0.00 V95: 12.81 % 12.81 % +0.00 % +0.00 V5: 12.81 % 12.81 % +0.00 % +0.00 D2cc: 102.79 % 102.79 % +0.00 % +0.00 Structure: test ----- DVH Type: cumulative, abs dose: Gy, abs volume: cm3 Volume: 12.81 cm3 Max Dose: 14.58 Gy Min Dose: 14.07 Gy Mean Dose: 14.29 Gy D100: 14.06 Gy D98: 14.12 Gy D95: 14.14 Gy D2cc: 14.39 Gy Structure: test ----- DVH Type: cumulative, rel dose, abs volume: cm3 Volume: 12.81 cm3 Max Dose: 104.14 % Min Dose: 100.50 % Mean Dose: 102.04 % D100: 100.43 % D98: 100.86 % D95: 101.00 % V100: 12.81 cm3 V95: 12.81 cm3 V5: 12.81 cm3 D2cc: 102.79 % create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore running install running build running build_py running egg_info writing dicompyler_core.egg-info/PKG-INFO writing dependency_links to dicompyler_core.egg-info/dependency_links.txt writing requirements to dicompyler_core.egg-info/requires.txt writing top-level names to dicompyler_core.egg-info/top_level.txt reading manifest file 'dicompyler_core.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.DS_Store' found under directory '*' writing manifest file 'dicompyler_core.egg-info/SOURCES.txt' running install_lib creating /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr creating /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib creating /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7 creating /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages creating /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages/dicompylercore copying /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/.pybuild/cpython3_3.7/build/dicompylercore/__init__.py -> /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages/dicompylercore copying /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/.pybuild/cpython3_3.7/build/dicompylercore/dicomparser.py -> /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages/dicompylercore copying /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/.pybuild/cpython3_3.7/build/dicompylercore/util.py -> /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages/dicompylercore copying /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/.pybuild/cpython3_3.7/build/dicompylercore/dvh.py -> /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages/dicompylercore copying /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/.pybuild/cpython3_3.7/build/dicompylercore/config.py -> /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages/dicompylercore copying /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/.pybuild/cpython3_3.7/build/dicompylercore/dvhcalc.py -> /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages/dicompylercore byte-compiling /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages/dicompylercore/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages/dicompylercore/dicomparser.py to dicomparser.cpython-37.pyc byte-compiling /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages/dicompylercore/util.py to util.cpython-37.pyc byte-compiling /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages/dicompylercore/dvh.py to dvh.cpython-37.pyc byte-compiling /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages/dicompylercore/config.py to config.cpython-37.pyc byte-compiling /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages/dicompylercore/dvhcalc.py to dvhcalc.cpython-37.pyc running install_egg_info Copying dicompyler_core.egg-info to /build/python-dicompylercore-BnzcwV/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.7/dist-packages/dicompyler_core-0.5.5.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installinit -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-dicompylercore: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'python3-dicompylercore' in '../python3-dicompylercore_0.5.5-2_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../python-dicompylercore_0.5.5-2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/python-dicompylercore-BnzcwV /tmp/python-dicompylercore-0.5.5-2vfdonkx0 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.JzyapIRoNP... I: success in 517.0226 seconds md5: python3-dicompylercore_0.5.5-2_amd64.deb: OK sha1: python3-dicompylercore_0.5.5-2_amd64.deb: OK sha256: python3-dicompylercore_0.5.5-2_amd64.deb: OK Checksums: OK