Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/python-csb/python-csb_1.2.5+dfsg-7_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/python-csb-1.2.5+dfsg-7vykax9ka/python-csb_1.2.5+dfsg-7_all.buildinfo Get source package info: python-csb=1.2.5+dfsg-7 Source URL: http://snapshot.notset.fr/mr/package/python-csb/1.2.5+dfsg-7/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-5 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 blt=2.5.3+dfsg-4.1 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-5 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-12 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-python=5.20211114 dh-strip-nondeterminism=1.12.1-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-lyx=2.3.6-1 g++=4:11.2.0-2 g++-11=11.2.0-12 gcc=4:11.2.0-2 gcc-11=11.2.0-12 gcc-11-base=11.2.0-12 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-12 libatomic1=11.2.0-12 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37-10 libblas3=3.10.0-1 libblkid1=2.37.2-4 libbrotli1=1.0.9-2+b3 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-5 libc-bin=2.32-5 libc-dev-bin=2.32-5 libc6=2.32-5 libc6-dev=2.32-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-12 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.26-1 libcrypt1=1:4.4.26-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.5.2 libdeflate0=1.8-1 libdpkg-perl=1.21.1 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.1-3 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.12.1-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.11.0+dfsg-1 libfribidi0=1.0.8-2 libgcc-11-dev=11.2.0-12 libgcc-s1=11.2.0-12 libgcrypt20=1.9.4-4 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgfortran5=11.2.0-12 libglib2.0-0=2.70.2-1 libgmp10=2:6.2.1+dfsg-3 libgomp1=11.2.0-12 libgpg-error0=1.42-3 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libharfbuzz0b=2.7.4-1 libicu67=67.1-7 libimagequant0=2.12.2-1.1 libisl23=0.24-2 libitm1=11.2.0-12 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.1.2-1 libjs-jquery=3.5.1+dfsg+~3.5.5-8 libjs-jquery-ui=1.13.0+dfsg-1 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-1 liblbfgsb0=3.0+dfsg.3-9 liblcms2-2=2.12~rc1-2 liblsan0=11.2.0-12 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.3-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libopenjp2-7=2.4.0-3 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libpng16-16=1.6.37-3 libpython3-stdlib=3.9.8-1 libpython3.10-minimal=3.10.1-1 libpython3.10-stdlib=3.10.1-1 libpython3.9-minimal=3.9.9-1 libpython3.9-stdlib=3.9.9-1 libqhull-r8.0=2020.2-4 libquadmath0=11.2.0-12 libraqm0=0.7.0-4 libreadline8=8.1-2 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.13-1 libsmartcols1=2.37.2-4 libsqlite3-0=3.36.0-2 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-12 libstdc++6=11.2.0-12 libsub-override-perl=0.09-2 libsystemd0=249.7-1 libtcl8.6=8.6.12+dfsg-1 libtiff5=4.3.0-2 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtk8.6=8.6.12-1 libtool=2.4.6-15 libtsan0=11.2.0-12 libubsan1=11.2.0-12 libuchardet0=0.0.7-1 libudev1=249.7-1 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libwebp6=0.6.1-2.1 libwebpdemux2=0.6.1-2.1 libwebpmux3=0.6.1-2.1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxft2=2.3.2-2 libxml2=2.9.12+dfsg-5+b1 libxrender1=1:0.9.10-1 libxslt1.1=1.1.34-4 libxss1=1:1.2.3-1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.5-1 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 ncurses-base=6.3-1 ncurses-bin=6.3-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 python-matplotlib-data=3.5.0-5 python3=3.9.8-1 python3-all=3.9.8-1 python3-appdirs=1.4.4-1 python3-attr=20.3.0-1 python3-brotli=1.0.9-2+b3 python3-cycler=0.11.0-1 python3-dateutil=2.8.1-6 python3-decorator=4.4.2-2 python3-distutils=3.9.9-3 python3-fonttools=4.27.1-1+b1 python3-fs=2.4.12-1 python3-kiwisolver=1.3.2-1+b1 python3-lib2to3=3.9.9-3 python3-lxml=4.6.4-1 python3-lz4=3.1.3+dfsg-1+b1 python3-matplotlib=3.5.0-5 python3-minimal=3.9.8-1 python3-mpmath=1.2.1-2 python3-numpy=1:1.21.4-2 python3-packaging=21.3-1 python3-pil=8.4.0-1 python3-pil.imagetk=8.4.0-1 python3-pkg-resources=59.4.0-1 python3-pyparsing=2.4.7-1 python3-scipy=1.7.1-2+b1 python3-setuptools=59.4.0-1 python3-six=1.16.0-2 python3-sympy=1.7.1-3 python3-tk=3.9.9-3 python3-tz=2021.3-1 python3-ufolib2=0.11.1+dfsg1-1 python3.10=3.10.1-1 python3.10-minimal=3.10.1-1 python3.9=3.9.9-1 python3.9-minimal=3.9.9-1 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 tk8.6-blt2.5=2.5.3+dfsg-4.1 tzdata=2021e-1 ucf=3.0043 unicode-data=14.0.0-1.1 util-linux=2.37.2-4 x11-common=1:7.7+23 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211212T031254Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211212T031254Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211212T085436Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d python-csb=1.2.5+dfsg-7 && mkdir -p /build/python-csb-VoQkpJ && dpkg-source --no-check -x /*.dsc /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg && chown -R builduser:builduser /build/python-csb-VoQkpJ" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1639087672" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/python-csb-VoQkpJ /tmp/python-csb-1.2.5+dfsg-7vykax9ka bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211212T085436Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.QIRxmHvZ1K as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.QIRxmHvZ1K Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211212T085436Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211212T085436Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (873 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4679 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211212T031254Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211212T031254Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211212T085436Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.QIRxmHvZ1K Get:1 http://snapshot.notset.fr/archive/debian/20211212T031254Z bookworm InRelease [129 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211212T085436Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211212T031254Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211212T031254Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211212T031254Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211212T031254Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211212T031254Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211212T031254Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211212T031254Z bookworm/main Sources [11.7 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211212T031254Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.0 MB in 36s (645 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.QIRxmHvZ1K I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d python-csb=1.2.5+dfsg-7 && mkdir -p /build/python-csb-VoQkpJ && dpkg-source --no-check -x /*.dsc /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg && chown -R builduser:builduser /build/python-csb-VoQkpJ"' exec /tmp/mmdebstrap.QIRxmHvZ1K Reading package lists... NOTICE: 'python-csb' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-csb.git Please use: git clone https://salsa.debian.org/med-team/python-csb.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3012 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211212T031254Z bookworm/main python-csb 1.2.5+dfsg-7 (dsc) [2253 B] Get:2 http://snapshot.notset.fr/archive/debian/20211212T031254Z bookworm/main python-csb 1.2.5+dfsg-7 (tar) [3000 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211212T031254Z bookworm/main python-csb 1.2.5+dfsg-7 (diff) [10.6 kB] Fetched 3012 kB in 3s (1198 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'python-csb_1.2.5+dfsg-7.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting python-csb in /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg dpkg-source: info: unpacking python-csb_1.2.5+dfsg.orig.tar.gz dpkg-source: info: unpacking python-csb_1.2.5+dfsg-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying exclude_online_tests.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying fix_setup.patch dpkg-source: info: applying avoid-multiple-namespace.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1639087672" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.QIRxmHvZ1K dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:237: python3.10 setup.py clean /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? if ex.code is 0: /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? if ex.code is not 0: /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? if Shell.run([sc, 'help']).code is 0: Warning: 'classifiers' should be a list, got type 'tuple' running clean removing '/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it I: pybuild base:237: python3.9 setup.py clean /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? if ex.code is 0: /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? if ex.code is not 0: /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? if Shell.run([sc, 'help']).code is 0: Warning: 'classifiers' should be a list, got type 'tuple' running clean removing '/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-indep dh binary-indep --with python3 --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:237: python3.10 setup.py config /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? if ex.code is 0: /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? if ex.code is not 0: /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? if Shell.run([sc, 'help']).code is 0: Warning: 'classifiers' should be a list, got type 'tuple' running config I: pybuild base:237: python3.9 setup.py config /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? if ex.code is 0: /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? if ex.code is not 0: /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? if Shell.run([sc, 'help']).code is 0: Warning: 'classifiers' should be a list, got type 'tuple' running config dh_auto_build -i -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3.10 setup.py build Warning: 'classifiers' should be a list, got type 'tuple' running build running build_py creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb copying csb/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb copying csb/build.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps copying csb/apps/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps copying csb/apps/bfit.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps copying csb/apps/bfite.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps copying csb/apps/buildhmm.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps copying csb/apps/csfrag.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps copying csb/apps/embd.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps copying csb/apps/helloworld.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps copying csb/apps/hhfrag.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps copying csb/apps/precision.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps copying csb/apps/promix.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps copying csb/apps/hhsearch.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio copying csb/bio/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/core copying csb/core/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/core creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/io copying csb/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/io copying csb/io/plots.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/io copying csb/io/tsv.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/numeric copying csb/numeric/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/numeric copying csb/numeric/integrators.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/numeric creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics copying csb/statistics/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics copying csb/statistics/ars.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics copying csb/statistics/maxent.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics copying csb/statistics/mixtures.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics copying csb/statistics/rand.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics copying csb/statistics/scalemixture.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statmech copying csb/statmech/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statmech copying csb/statmech/ensembles.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statmech copying csb/statmech/wham.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statmech creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test copying csb/test/app.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test copying csb/test/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/fragments copying csb/bio/fragments/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/fragments copying csb/bio/fragments/rosetta.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/fragments creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/hmm copying csb/bio/hmm/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/hmm copying csb/bio/hmm/pseudocounts.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/hmm creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io copying csb/bio/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io copying csb/bio/io/clans.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io copying csb/bio/io/cs.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io copying csb/bio/io/dssp.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io copying csb/bio/io/fasta.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io copying csb/bio/io/hhpred.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io copying csb/bio/io/mrc.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io copying csb/bio/io/noe.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io copying csb/bio/io/procheck.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io copying csb/bio/io/psipred.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io copying csb/bio/io/svg.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io copying csb/bio/io/vasco.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io copying csb/bio/io/whatif.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io copying csb/bio/io/wwpdb.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/nmr copying csb/bio/nmr/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/nmr creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/sequence copying csb/bio/sequence/alignment.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/sequence copying csb/bio/sequence/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/sequence creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/structure copying csb/bio/structure/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/structure creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/utils copying csb/bio/utils/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/utils creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/pdf copying csb/statistics/pdf/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/pdf copying csb/statistics/pdf/parameterized.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/pdf creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers copying csb/statistics/samplers/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/multichain.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/propagators.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio copying csb/test/cases/bio/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/core copying csb/test/cases/core/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/core creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/io copying csb/test/cases/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/integrators.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/numeric creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/ars.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/maxent.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/mixtures.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/rand.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/scalemixture.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/ensembles.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statmech creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/fragments copying csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/fragments creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/hmm copying csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/hmm creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io copying csb/test/cases/bio/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/nmr copying csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/nmr creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence copying csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/structure copying csb/test/cases/bio/structure/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/structure creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/utils copying csb/test/cases/bio/utils/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/utils creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/clans copying csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/clans creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/cs copying csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/cs creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/fasta copying csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/fasta creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/hhpred copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/hhpred creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/mrc creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/noe copying csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/noe creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/procheck copying csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/procheck creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/whatif copying csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/whatif creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/wwpdb copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/wwpdb creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/alignment copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/alignment creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/pdf creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/samplers copying csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/samplers running egg_info creating csb.egg-info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt writing manifest file 'csb.egg-info/SOURCES.txt' reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' adding license file 'LICENSE.rst' writing manifest file 'csb.egg-info/SOURCES.txt' creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/1C3W_10.mrc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/1d3z.legacy.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/1d3z.regular.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/1nz9.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/1nz9A.frags -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/2JZC.sum -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/2l01.v2.str -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/2l01.v3.str -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/3p1u.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/3shm_ca.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/ISL5.1.isl -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/Sparky.peaks -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/Xeasy1.peaks -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/Xeasy2.peaks -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/csb.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/d1b24a2.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/d1ea0a1.hhr -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/d1nz0a_.a3m -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/d1nz0a_.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/d1nz0a_.mfasta -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/d1nz0a_.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/mapping.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/mapping2.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/mapping3.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/modified.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/modified2.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/out.clans -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/pdbout.txt -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/standard.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/struct.ali.mfasta -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/test.fa -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/test.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data copying csb/test/data/test2.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/nmr/resources I: pybuild base:237: /usr/bin/python3 setup.py build Warning: 'classifiers' should be a list, got type 'tuple' running build running build_py creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb copying csb/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb copying csb/build.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/bfit.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/bfite.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/buildhmm.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/csfrag.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/embd.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/helloworld.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/hhfrag.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/precision.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/promix.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/hhsearch.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio copying csb/bio/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core copying csb/core/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io copying csb/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io copying csb/io/plots.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io copying csb/io/tsv.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric copying csb/numeric/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric copying csb/numeric/integrators.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/ars.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/maxent.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/mixtures.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/rand.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/scalemixture.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech copying csb/statmech/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech copying csb/statmech/ensembles.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech copying csb/statmech/wham.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test copying csb/test/app.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test copying csb/test/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments copying csb/bio/fragments/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments copying csb/bio/fragments/rosetta.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm copying csb/bio/hmm/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm copying csb/bio/hmm/pseudocounts.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/clans.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/cs.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/dssp.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/fasta.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/hhpred.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/mrc.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/noe.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/procheck.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/psipred.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/svg.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/vasco.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/whatif.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/wwpdb.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr copying csb/bio/nmr/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence copying csb/bio/sequence/alignment.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence copying csb/bio/sequence/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure copying csb/bio/structure/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils copying csb/bio/utils/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf copying csb/statistics/pdf/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf copying csb/statistics/pdf/parameterized.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers copying csb/statistics/samplers/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/multichain.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/propagators.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio copying csb/test/cases/bio/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core copying csb/test/cases/core/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io copying csb/test/cases/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/integrators.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/ars.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/maxent.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/mixtures.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/rand.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/scalemixture.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/ensembles.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments copying csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm copying csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io copying csb/test/cases/bio/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr copying csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence copying csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure copying csb/test/cases/bio/structure/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils copying csb/test/cases/bio/utils/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans copying csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs copying csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta copying csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe copying csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck copying csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif copying csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers copying csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers running egg_info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' adding license file 'LICENSE.rst' writing manifest file 'csb.egg-info/SOURCES.txt' creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/1C3W_10.mrc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/1d3z.legacy.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/1d3z.regular.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/1nz9.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/1nz9A.frags -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/2JZC.sum -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/2l01.v2.str -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/2l01.v3.str -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/3p1u.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/3shm_ca.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/ISL5.1.isl -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/Sparky.peaks -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/Xeasy1.peaks -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/Xeasy2.peaks -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/csb.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/d1b24a2.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/d1ea0a1.hhr -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/d1nz0a_.a3m -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/d1nz0a_.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/d1nz0a_.mfasta -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/d1nz0a_.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/mapping.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/mapping2.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/mapping3.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/modified.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/modified2.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/out.clans -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/pdbout.txt -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/standard.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/struct.ali.mfasta -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/test.fa -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/test.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/test2.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg' LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ cd {build_dir}; \ PYTHONPATH={build_dir} PYTHONWARNINGS=d {interpreter} csb/test/app.py --generated-resources /tmp --verbosity 2' I: pybuild base:237: set -e; \ cd /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build; \ PYTHONPATH=/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build PYTHONWARNINGS=d python3.10 csb/test/app.py --generated-resources /tmp --verbosity 2 /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/__init__.py:162: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses import imp /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/hhpred.py:210: DeprecationWarning: invalid escape sequence '\d' m = re.search('(\d+)\D+(\d+)', line).groups() /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/hhpred.py:260: DeprecationWarning: invalid escape sequence '\s' seq = re.sub('\s+', '', ''.join(lines[1:])) /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/hhpred.py:307: DeprecationWarning: invalid escape sequence '\-' pattern = re.compile('^[A-Z\-]\s[0-9]+\s+') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/structure/__init__.py:2129: DeprecationWarning: invalid escape sequence '\s' string = ''.join(re.split('\s+', string)) /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/structure/__init__.py:2131: DeprecationWarning: invalid escape sequence '\s' conf_string = ''.join(re.split('\s+', conf_string)) /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/sequence/__init__.py:566: DeprecationWarning: invalid escape sequence '\w' self._residues += re.sub('([^\w\-\.])+', '', string) /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/wwpdb.py:1222: DeprecationWarning: invalid escape sequence '\d' res = re.search("(\d+(?:\.\d+)?)\s+ANGSTROM", line) /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/__init__.py:355: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.full.pickle'> Pickle.dump(ensemble, open(os.path.join(self.generatedData, '1nz9.full.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/__init__.py:361: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.model1.pickle'> Pickle.dump(model1, open(os.path.join(self.generatedData, '1nz9.model1.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/__init__.py:341: DeprecationWarning: invalid escape sequence '\s' """ /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/procheck.py:31: DeprecationWarning: invalid escape sequence '\s' input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/procheck.py:32: DeprecationWarning: invalid escape sequence '\d' residues = re.compile('(\d+)\s*residues\s\|') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/procheck.py:33: DeprecationWarning: invalid escape sequence '\s' ramachandran_plot = re.compile('Ramachandran\splot:\s*(\d+\.\d+)' + /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/procheck.py:34: DeprecationWarning: invalid escape sequence '\s' '%\s*core\s*(\d+\.\d+)%\s*allow\s*(\d+\.\d+)' + /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/procheck.py:35: DeprecationWarning: invalid escape sequence '\s' '%\s*gener\s*(\d+\.\d+)%\s*disall') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/procheck.py:36: DeprecationWarning: invalid escape sequence '\s' labelled_all = re.compile('Ramachandrans:\s*(\d+)\s*.*?out\sof\s*(\d+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/procheck.py:37: DeprecationWarning: invalid escape sequence '\s' labelled_chi = re.compile('Chi1-chi2\splots:\s*(\d+)\s*.*?out\sof\s*(\d+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/procheck.py:38: DeprecationWarning: invalid escape sequence '\s' bad_contacts = re.compile('Bad\scontacts:\s*(\d+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/procheck.py:39: DeprecationWarning: invalid escape sequence '\s' g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' + /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/procheck.py:40: DeprecationWarning: invalid escape sequence '\s' '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/whatif.py:32: DeprecationWarning: invalid escape sequence '\s' re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/whatif.py:33: DeprecationWarning: invalid escape sequence '\s' re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/whatif.py:34: DeprecationWarning: invalid escape sequence '\s' re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/whatif.py:35: DeprecationWarning: invalid escape sequence '\s' re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/whatif.py:36: DeprecationWarning: invalid escape sequence '\S' re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? self.assertFalse(self.enum.C is 66) /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/io/__init__.py:482: DeprecationWarning: invalid escape sequence '\w' "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] testAnchoredAround (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBackbone (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testBackboneAt (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testEnd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testOverlap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testQEnd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testQStart (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testRMSD (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testRMSDTo (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testSourceID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testStart (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testTorsion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testTorsionAt (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testCount (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testMean (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testShrink (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testShrinkOne (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testAccession (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testEnd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testFomObject (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testQEnd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testQStart (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testResidues (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testScore (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testSourceID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testStart (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testTorsion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testAt (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testComplement (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testDump (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpf3o7_inm' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFromSource (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testIndexer (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testMarkUnconfident (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testRead (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'> for line in open(file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSize (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testSort (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testSources (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testStartingAt (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testMakeChopped (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeCombined (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeFiltered (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeFragset (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMix (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testAccession (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testAssign (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testEntryID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFilter (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFromProfile (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFromSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testMatches (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testResidues (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testAssign (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testAssignments (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testClosest (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testFilter (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testLongest (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testNative (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testPrecision (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testCompute (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testComputeSingle (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testFlatTorsionMap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testGetAngles (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testTarget (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testThreshold (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testIndexer (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testNeff (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testRank (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testResidue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testEquals (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testIncludes (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testSurpasses (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testSort (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testAllLayers (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testChain (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testConvertScores (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testEmissionSimilarity (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testEnd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testLayers (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testName (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testScoreUnits (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testSegment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStart (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStartInsertion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStructure (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testToHMM (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok testToHMM (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok runTest (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder) ... ok testBackground (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testEmission (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testSilent (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testTransitions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testClansEntryAddingAndSorting (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testClansEntrySortingWithCustomKeyFunction (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testClansInit (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClans) Test creating an empty L{Clans} instance. ... ok testDuplicateEntryError (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testGetEntry (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testColorInit (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testColorSetter (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testParseClansColorWithCorrectInput (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testParseClansColorWithWrongInput (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testToClansColor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testWrittenIsIdenticalToOriginal (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> self._clans_instance.filename)).read().split('\n', 1)[1] ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testForbiddenAssignments (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testInstatiation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testUnknownParamFail (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testParseFile (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansParser) Test parsing of a small dummy file with known values ... ok testPrematureGetter (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansParser) Test whether the premature (before parsing) access to clans_instance is ... ok testAddingAndRemovingSeqgroups (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testAddingClansEntries (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testAppendingSeqgroupsFromOtherInstance (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testInit (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testRemovingClansEntries (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testCreate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testGuess (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testReadFile (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testReadShifts (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCreate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testGuess (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testReadFile (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testReadShifts (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpv016ouar' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgn5sk0ef' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testA3mToFasta (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpasbzfp4r' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFastaToA3m (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzkd39llz' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp93udhwxo' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpaerva_z0' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testReadFASTA (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testStrict (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testCreate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder) ... ok testParseString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadJunk (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadNucleicSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadProteinSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testAddAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1_hfovwg' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpl1w_t0_z' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok testReadFASTA (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok testParseFile (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'> self.data = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testRead (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testMakeAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testMakeEntry (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... ok testParseFile (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> content = open(filename).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... ok testLargeHitlist (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions) @see: [CSB 0000056] ... ok testFormatStructure (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkro2x3np' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseLogScales (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok testParseProbability (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok testParseRedundantA3M (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions) @see: [CSB 0000068], [CSB 0000128] ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptecwkst1' mode='r' encoding='UTF-8'> generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead array = numpy.fromstring(map_data, numpy.float32, count) ok testReadHeader (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok testReadRawHeader (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok testReconstructHeader (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok testWriteDensity (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok testRead (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadAll (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok testReadFile (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok testBuild (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder) ... ok testRead (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParse (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser) ... ok testParse (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser) ... ok testCommaSplitting (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions) @see: [CSB 0000067] ... ok testMap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) Strictly speaking, this is a regression test. But it so essential that ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAdd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testFind (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testGet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testRemove (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testAccession (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testChain (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testEntryID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testFormat (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testFactory (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID) ... ok testMap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) Strictly speaking, this is a regression test. But it so essential that ... ok testAdd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testFind (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testGet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testRemove (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok runTest (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestFind) ... ok testFileName (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testGuessSequenceType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testModels (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseBiomolecule (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseHetMolecules (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseModels (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseResidue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseResidueSafe (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseStructure (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testHetMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) @see: [CSB 0000031] ... ok testNonStandardResidueMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) @see: [CSB 0000052] ... ok testCombinedMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testFastMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testFileName (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testGuessSequenceType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testMapper (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testModels (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseModels (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseResidue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseResidueSafe (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseStructure (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testRobustMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testMap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSecStructureParsing (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions) @see: [CSB 0000045] ... ok testAccession (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testChain (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testEntryID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testFormat (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testAccession (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testChain (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testEntryID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testFormat (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testFactory (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testConnected (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testConnectedAtoms (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testContains (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testFactory (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testGetAtoms (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok testLabel (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok testNegative (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testPositive (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testScore (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testAtomContacts (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testAtoms (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testBuild (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testChain (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testCompare (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testConnect (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testConnected (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testContacts (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testContains (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testCutoff (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testPosition (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testResidueContacts (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testBuild (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromAtom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromShift (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testGetAtom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testMatch (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testParse (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testConnectedDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testElement (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testGet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testHasConnectedDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testHasElement (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testIntensity (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testNumDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testConnect (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testConnectedDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testElement (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testHasConnectedDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testHasElement (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testLen (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testMaxIntensity (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testMinIntensity (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testNumDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testNumProtonDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testProtonDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testFactory (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSecondaryShift (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSimpleSecondaryShift (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testFormat (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> self.a3m = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testHMMSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsertionAt (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testMatches (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testRows (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testSize (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testToString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testAdd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testColumns (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testFormat (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testGapAt (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testIndexer (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowColumns (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowMap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowResidues (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRows (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testSize (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testAlphabet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testDump (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmppl62l82r' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphd5029kn' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testHeader (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testId (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testIndexeres (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testStrip (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testToString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testAlphabet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testDump (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpnslyjksd' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5o33h63p' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testHeader (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testId (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testIndexeres (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testStrip (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testToString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testAlphabet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testDump (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequence) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpddmfoxb4' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4myzgee8' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testHeader (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testId (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testIndexeres (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testStrip (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testToString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testAdd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testColumns (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testFormat (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testGapAt (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testIndexer (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowColumns (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowMap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowResidues (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRows (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testSize (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testToFASTA (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmph5ffb2y3' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1dgppun0' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testEnd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testGaps (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIdenticals (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIdentity (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIsEmpty (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQstart (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQuery (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testScore (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testStart (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testStr (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testSubject (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testAlign (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok testEmptyAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok testScore (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix) ... ok testAlign (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok testEmptyAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok testScore (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix) ... ok testAppendAtom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.ChainRegressions) @see: [CSB 0000122] ... ok testApplyTransformation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.ChainRegressions) @see: [CSB 0000030] ... ok testClone (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.ChainRegressions) @see: [CSB 0000029] ... ok testListCoordinates (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.ChainRegressions) Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' testApplyTransformation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testComponents (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testItems (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testListCoordinates (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testElement (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testName (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testResidue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestAtom) @todo: more checks are needed here (e.g. append an atom to different residues) ... ok testSerialNumber (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestAtom) @bug: check for overlapping SNs in a Chain ... ok testSorting (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testVector (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testAccession (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAlign (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAlphabet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testClone (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testComputeTorsion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testContains (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testEntryID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testFind (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testFromSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testHeader (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testId (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testListCoordinates (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testRMSD (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSecStructure (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSuperimpose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testTMScore (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testTMSuperimpose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testElement (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testFind (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testIteration (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testName (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testResidue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) @todo: more checks are needed here (e.g. append an atom to different residues) ... ok testSerialNumber (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) @bug: check for overlapping SNs in a Chain ... ok testSorting (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testVector (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testComponents (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testFirstModel (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testItems (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testToPDB (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testFactory (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testHasStructure (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testId (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testInsertionCode (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testIsModified (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testItems (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testLabel (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testSequenceNumber (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testTorsion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testAccession (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testFirstChain (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testFromChain (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testItems (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testRemove (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testToFASTA (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testToPDB (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestStructure) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxvemicb8' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphdl1kalu' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBool (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testConversion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testRMSD (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testRmsdMirrorImage (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.Regressions) ... ok testTMSuperimpose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.Regressions) @see: [CSB 0000058] ... ok testCenterOfMass (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDeg (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDistance (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDistanceMatrix (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFindPairs (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFit (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFitWellordered (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testInertiaTensor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRad (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRadiusOfGyration (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRmsd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRmsdCur (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testScaleAndFit (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testSecondMoments (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTmScore (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTmSuperimpose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTorsionRmsd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWFit (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWrmsd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testBool (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testIndices (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testUpdate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok runTest (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestDeepCopy) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/core/__init__.py:21: DeprecationWarning: Please use assertNotEqual instead. self.assertNotEquals(id(obj), id(copy)) ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testBool (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testRemove (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testSet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testUpdate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testComparison (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok testCreate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok testInOperator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok testIsMember (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok testMembers (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok testMutability (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok testNames (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok testParseName (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok testParseValue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok testRepr (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok testSerialization (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok testStr (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok testValues (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestEnum) ... ok runTest (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestIterable) ... ok runTest (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/core.TestOrderedDict) ... ok testWrite (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestAutoFlushStream) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwv99t6tn' mode='r' encoding='UTF-8'> content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testGzip (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testGzipFail (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testLock (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testLockGzip (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testRecusionLimit (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testSimple (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testAllMarkers (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestEntryReader) ... ok testDel (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestEntryReader) ... ok testRead (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestEntryReader) ... ok testReadAll (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestEntryReader) ... ok testStartMarker (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestEntryReader) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testContextManager (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testWrite (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpljce20c5' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteAll (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpn245csx4' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteLine (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpu8ywe5l8' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testClose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testContextManager (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testFlush (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testWrite (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testExitCode (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestShell) ... ok testSTDERR (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestShell) ... ok testSTDOUT (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestShell) ... ok testArrayCompatibility (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTable) ... ok testDataAccess (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTable) ... ok testDump (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTable) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3kw9k_c9' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsert (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTable) ... ok testIteration (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTable) ... ok testSQLDataAccess (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTable) ... ok testScalar (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTable) ... ok testSelect (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTable) ... ok testUpdate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTable) ... ok testWhere (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTable) ... ok testAutoCleanup (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTempFile) ... ok testCallForwarding (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTempFile) ... ok testClose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTempFile) ... ok testContextManager (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTempFile) ... ok testMultipleHandles (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTempFile) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp638djdw8' mode='r' encoding='UTF-8'> self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAutoCleanup (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTempFolder) ... ok testClose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTempFolder) ... ok testContextManager (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/io.TestTempFolder) ... ok testCaching (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... ok testDiagonalTweak (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' testUnityMultipleTweak (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' testDihedralAngles (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.MathRegressions) r526 ... ok testDegree2Radian (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.TestMath) ... ok testDihedralAngles (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.TestMath) ... ok testExp (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.TestMath) ... ok testFromPolar (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.TestMath) ... ok testLog (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.TestMath) ... ok testPolar (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.TestMath) ... ok testRadian2Degree (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.TestMath) ... ok testRotationMatrix (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.TestMath) ... ok testLogTrapezoidal (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testLogTrapezoidal2D (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testSimpson2D (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal2D (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testLeapFrog (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok testVelocityVerlet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok testFastLeapFrog (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testLeapFrog (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testVelocityVerlet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testAutorcorrelation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCircmean (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCircvar (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCumulative (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testEntropy (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testKurtosis (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testSkewness (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testNormal (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/ars.TestARS) ... ok testMaxent (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/maxe.TestMaxent) ... skipped 'slow' testConformerMixture (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok testSegmentMixture (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok testSampleFromHistogram (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testTruncatedGamma (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testTruncatedNormal (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testEnsemble (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testGamma (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testGammaMAP (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testInvGamma (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testInvGammaMAP (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testParameterValidation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions) @see: [CSB 0000132] ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testSet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testValue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testBindTo (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testIsVirtual (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testSet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testBindTo (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testConstrucor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testFindBaseParameter (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testIsVirtual (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testName (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testSet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testValue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testAssignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testParameterChaining (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testProperties (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testAcceptSwap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok testSwap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok testAcceptProposal (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testAcceptanceRate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testEnergy (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testLastMoveAccepted (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testSample (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testTemperature (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testUpdateStatistics (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testCalcPacc (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok testHamiltonian (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok testPropose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not positive-semidefinite. initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not positive-semidefinite. momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), ok testHMCPropagator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testHMCPropagatorMM (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testNCMCPropagator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... skipped 'Takes quite a long time to run.' testRWMCPropagator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testHMCStepRENS (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testMDRENS (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testReplicaExchangeMC (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... skipped 'Takes some time, rendered optional by a unit test.' testThermostattedMDRens (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testThermostattedMDRensMM (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testProposeWithMomentum (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok testProposeWithoutMomentum (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok testHMCPropagation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testNonequilibriumStepPropagator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testPlainMDPropagation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testReducedHamiltonian (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testReducedHamiltonianPerturbation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testStep (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testCalcPaccSwap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok testProposeSwap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok testFiveReplicas (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/samplers/__init__.py:866: DeprecationWarning: elementwise comparison failed; this will raise an error in the future. ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ok testFiveReplicasOffset (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testFourReplicas (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testTwoReplicas (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testBoltzmann (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testComposite (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testTsallis (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testNonparametricWHAM (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok testWHAM (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-10_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok ---------------------------------------------------------------------- Ran 697 tests in 76.276s OK (skipped=6) I: pybuild base:237: set -e; \ cd /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build; \ PYTHONPATH=/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build PYTHONWARNINGS=d python3.9 csb/test/app.py --generated-resources /tmp --verbosity 2 /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:162: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__init__.py:2129: DeprecationWarning: invalid escape sequence \s string = ''.join(re.split('\s+', string)) /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__init__.py:2131: DeprecationWarning: invalid escape sequence \s conf_string = ''.join(re.split('\s+', conf_string)) /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__init__.py:566: DeprecationWarning: invalid escape sequence \w self._residues += re.sub('([^\w\-\.])+', '', string) /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/hhpred.py:210: DeprecationWarning: invalid escape sequence \d m = re.search('(\d+)\D+(\d+)', line).groups() /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/hhpred.py:260: DeprecationWarning: invalid escape sequence \s seq = re.sub('\s+', '', ''.join(lines[1:])) /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/hhpred.py:307: DeprecationWarning: invalid escape sequence \- pattern = re.compile('^[A-Z\-]\s[0-9]+\s+') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:1222: DeprecationWarning: invalid escape sequence \d res = re.search("(\d+(?:\.\d+)?)\s+ANGSTROM", line) /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__init__.py:341: DeprecationWarning: invalid escape sequence \s """ /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:31: DeprecationWarning: invalid escape sequence \s input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:32: DeprecationWarning: invalid escape sequence \d residues = re.compile('(\d+)\s*residues\s\|') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:33: DeprecationWarning: invalid escape sequence \s ramachandran_plot = re.compile('Ramachandran\splot:\s*(\d+\.\d+)' + /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:34: DeprecationWarning: invalid escape sequence \s '%\s*core\s*(\d+\.\d+)%\s*allow\s*(\d+\.\d+)' + /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:35: DeprecationWarning: invalid escape sequence \s '%\s*gener\s*(\d+\.\d+)%\s*disall') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:36: DeprecationWarning: invalid escape sequence \s labelled_all = re.compile('Ramachandrans:\s*(\d+)\s*.*?out\sof\s*(\d+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:37: DeprecationWarning: invalid escape sequence \s labelled_chi = re.compile('Chi1-chi2\splots:\s*(\d+)\s*.*?out\sof\s*(\d+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:38: DeprecationWarning: invalid escape sequence \s bad_contacts = re.compile('Bad\scontacts:\s*(\d+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:39: DeprecationWarning: invalid escape sequence \s g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' + /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:40: DeprecationWarning: invalid escape sequence \s '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:32: DeprecationWarning: invalid escape sequence \s re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:33: DeprecationWarning: invalid escape sequence \s re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:34: DeprecationWarning: invalid escape sequence \s re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:35: DeprecationWarning: invalid escape sequence \s re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:36: DeprecationWarning: invalid escape sequence \S re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? self.assertFalse(self.enum.C is 66) /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:482: DeprecationWarning: invalid escape sequence \w "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] testAnchoredAround (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBackbone (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testBackboneAt (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testEnd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testOverlap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testQEnd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testQStart (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testRMSD (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testRMSDTo (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testSourceID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testStart (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testTorsion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testTorsionAt (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testCount (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testMean (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testShrink (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testShrinkOne (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testAccession (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testEnd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testFomObject (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testQEnd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testQStart (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testResidues (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testScore (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testSourceID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testStart (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testTorsion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testAt (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testComplement (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testDump (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0cibp5w_' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFromSource (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testIndexer (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testMarkUnconfident (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testRead (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'> for line in open(file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSize (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testSort (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testSources (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testStartingAt (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testMakeChopped (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeCombined (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeFiltered (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeFragset (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMix (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testAccession (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testAssign (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testEntryID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFilter (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFromProfile (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFromSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testMatches (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testResidues (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testAssign (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testAssignments (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testClosest (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testFilter (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testLongest (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testNative (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testPrecision (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testCompute (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testComputeSingle (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testFlatTorsionMap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testGetAngles (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testTarget (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testThreshold (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testIndexer (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testNeff (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testRank (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testResidue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testEquals (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testIncludes (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testSurpasses (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testSort (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testAllLayers (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testChain (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testConvertScores (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testEmissionSimilarity (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testEnd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testLayers (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testName (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testScoreUnits (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testSegment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStart (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStartInsertion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStructure (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testToHMM (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok testToHMM (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok runTest (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder) ... ok testBackground (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testEmission (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testSilent (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testTransitions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testClansEntryAddingAndSorting (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testClansEntrySortingWithCustomKeyFunction (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testClansInit (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) Test creating an empty L{Clans} instance. ... ok testDuplicateEntryError (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testGetEntry (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testColorInit (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testColorSetter (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testParseClansColorWithCorrectInput (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testParseClansColorWithWrongInput (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testToClansColor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testWrittenIsIdenticalToOriginal (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py:375: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> data_blocks = open(os.path.expanduser( ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testForbiddenAssignments (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testInstatiation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testUnknownParamFail (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testParseFile (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) Test parsing of a small dummy file with known values ... ok testPrematureGetter (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) Test whether the premature (before parsing) access to clans_instance is ... ok testAddingAndRemovingSeqgroups (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testAddingClansEntries (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testAppendingSeqgroupsFromOtherInstance (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testInit (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testRemovingClansEntries (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testCreate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testGuess (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testReadFile (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testReadShifts (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCreate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testGuess (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testReadFile (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testReadShifts (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp63nf021k' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3l43t9ui' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testA3mToFasta (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpq3ng7zgz' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFastaToA3m (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpujf0wf_f' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpt4btxhm_' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpnbswr8e4' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testReadFASTA (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testStrict (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testCreate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder) ... ok testParseString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadJunk (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadNucleicSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadProteinSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testAddAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvstxip3_' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8t1r7902' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok testReadFASTA (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok testParseFile (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'> self.data = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testRead (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testMakeAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testMakeEntry (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... ok testParseFile (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> content = open(filename).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... ok testLargeHitlist (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions) @see: [CSB 0000056] ... ok testFormatStructure (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpecuf2gs1' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseLogScales (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok testParseProbability (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok testParseRedundantA3M (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions) @see: [CSB 0000068], [CSB 0000128] ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_b5fg7ov' mode='r' encoding='UTF-8'> generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead array = numpy.fromstring(map_data, numpy.float32, count) ok testReadHeader (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok testReadRawHeader (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok testReconstructHeader (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok testWriteDensity (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok testRead (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadAll (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok testReadFile (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok testBuild (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder) ... ok testRead (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParse (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser) ... ok testParse (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser) ... ok testCommaSplitting (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions) @see: [CSB 0000067] ... ok testMap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) Strictly speaking, this is a regression test. But it so essential that ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAdd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testFind (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testGet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testRemove (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testAccession (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testChain (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testEntryID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testFormat (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testFactory (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID) ... ok testMap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) Strictly speaking, this is a regression test. But it so essential that ... ok testAdd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testFind (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testGet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testRemove (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok runTest (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFind) ... ok testFileName (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testGuessSequenceType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testModels (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseBiomolecule (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseHetMolecules (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseModels (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseResidue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseResidueSafe (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseStructure (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testHetMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) @see: [CSB 0000031] ... ok testNonStandardResidueMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) @see: [CSB 0000052] ... ok testCombinedMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testFastMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testFileName (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testGuessSequenceType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testMapper (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testModels (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseModels (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseResidue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseResidueSafe (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseStructure (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testRobustMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testMap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSecStructureParsing (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions) @see: [CSB 0000045] ... ok testAccession (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testChain (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testEntryID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testFormat (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testAccession (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testChain (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testEntryID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testFormat (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testFactory (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testConnected (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testConnectedAtoms (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testContains (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testFactory (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testGetAtoms (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok testLabel (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok testNegative (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testPositive (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testScore (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testAtomContacts (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testAtoms (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testBuild (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testChain (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testCompare (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testConnect (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testConnected (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testContacts (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testContains (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testCutoff (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testPosition (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testResidueContacts (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testBuild (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromAtom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromShift (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testGetAtom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testMatch (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testParse (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testConnectedDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testElement (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testGet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testHasConnectedDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testHasElement (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testIntensity (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testNumDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testConnect (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testConnectedDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testElement (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testHasConnectedDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testHasElement (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testLen (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testMaxIntensity (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testMinIntensity (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testNumDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testNumProtonDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testProtonDimensions (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testFactory (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSecondaryShift (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSimpleSecondaryShift (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testFormat (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> self.a3m = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testHMMSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsertionAt (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testMatches (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testRows (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testSize (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testToString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testAdd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testColumns (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testFormat (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testGapAt (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testIndexer (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowColumns (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowMap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowResidues (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRows (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testSize (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testAlphabet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testDump (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzowh3wz4' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmprlrkr9ta' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testHeader (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testId (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testIndexeres (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testStrip (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testToString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testAlphabet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testDump (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzydfw0nv' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9thpg0x5' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testHeader (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testId (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testIndexeres (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testStrip (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testToString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testAlphabet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testDump (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp521ay2xi' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxt02vquw' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testHeader (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testId (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testIndexeres (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testStrip (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testToString (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testAdd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testColumns (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testFormat (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testGapAt (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testIndexer (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowColumns (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowMap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowResidues (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRows (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testSize (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testToFASTA (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplc7xksi_' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2nd1kmvi' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testEnd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testGaps (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIdenticals (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIdentity (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIsEmpty (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQstart (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQuery (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testScore (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testStart (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testStr (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testSubject (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testAlign (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok testEmptyAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok testScore (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix) ... ok testAlign (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok testEmptyAlignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok testScore (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix) ... ok testAppendAtom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) @see: [CSB 0000122] ... ok testApplyTransformation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) @see: [CSB 0000030] ... ok testClone (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) @see: [CSB 0000029] ... ok testListCoordinates (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' testApplyTransformation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testComponents (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testItems (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testListCoordinates (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testElement (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testName (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testResidue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) @todo: more checks are needed here (e.g. append an atom to different residues) ... ok testSerialNumber (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) @bug: check for overlapping SNs in a Chain ... ok testSorting (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testVector (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testAccession (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAlign (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAlphabet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testClone (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testComputeTorsion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testContains (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testEntryID (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testFind (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testFromSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testHeader (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testId (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testListCoordinates (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testRMSD (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSecStructure (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSequence (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSubregion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSuperimpose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testTMScore (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testTMSuperimpose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testElement (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testFind (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testIteration (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testName (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testResidue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) @todo: more checks are needed here (e.g. append an atom to different residues) ... ok testSerialNumber (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) @bug: check for overlapping SNs in a Chain ... ok testSorting (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testVector (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testComponents (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testFirstModel (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testItems (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testToPDB (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testFactory (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testHasStructure (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testId (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testInsertionCode (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testIsModified (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testItems (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testLabel (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testSequenceNumber (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testTorsion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testType (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testAccession (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testFirstChain (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testFromChain (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testItems (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testRemove (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testToFASTA (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testToPDB (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsswo0yho' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpatit3gnp' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBool (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testConversion (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testRMSD (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testRmsdMirrorImage (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.Regressions) ... ok testTMSuperimpose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.Regressions) @see: [CSB 0000058] ... ok testCenterOfMass (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDeg (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDistance (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDistanceMatrix (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFindPairs (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFit (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFitWellordered (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testInertiaTensor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRad (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRadiusOfGyration (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRmsd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRmsdCur (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testScaleAndFit (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testSecondMoments (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTmScore (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTmSuperimpose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTorsionRmsd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWFit (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWrmsd (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testBool (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testIndices (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testUpdate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok runTest (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDeepCopy) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py:21: DeprecationWarning: Please use assertNotEqual instead. self.assertNotEquals(id(obj), id(copy)) ok testAppend (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testBool (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testGetitem (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testLength (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testRemove (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testSet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testUpdate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testComparison (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testCreate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testInOperator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testIsMember (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testIterator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testMembers (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testMutability (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testNames (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testParseName (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testParseValue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testRepr (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testSerialization (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testStr (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testValues (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok runTest (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestIterable) ... ok runTest (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestOrderedDict) ... ok testWrite (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestAutoFlushStream) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpggxmv5be' mode='r' encoding='UTF-8'> content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testGzip (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testGzipFail (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testLock (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testLockGzip (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testRecusionLimit (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testSimple (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testAllMarkers (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok testDel (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok testRead (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok testReadAll (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok testStartMarker (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testContextManager (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testWrite (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpt7ofvmuk' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteAll (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4ucpz23m' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteLine (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpm4mnla96' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testClose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testContextManager (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testFlush (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testWrite (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testExitCode (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok testSTDERR (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok testSTDOUT (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok testArrayCompatibility (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testDataAccess (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testDump (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwnff7g8l' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsert (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testIteration (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testSQLDataAccess (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testScalar (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testSelect (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testUpdate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testWhere (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testAutoCleanup (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok testCallForwarding (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok testClose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok testContextManager (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok testMultipleHandles (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphmmex_f0' mode='r' encoding='UTF-8'> self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAutoCleanup (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok testClose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok testContextManager (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok testCaching (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... ok testDiagonalTweak (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' testUnityMultipleTweak (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' testDihedralAngles (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.MathRegressions) r526 ... ok testDegree2Radian (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testDihedralAngles (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testExp (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testFromPolar (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testLog (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testPolar (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testRadian2Degree (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testRotationMatrix (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testLogTrapezoidal (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testLogTrapezoidal2D (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testSimpson2D (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal2D (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testLeapFrog (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok testVelocityVerlet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok testFastLeapFrog (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testLeapFrog (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testVelocityVerlet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testAutorcorrelation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCircmean (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCircvar (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCumulative (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testEntropy (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testKurtosis (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testSkewness (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testNormal (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/ars.TestARS) ... ok testMaxent (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/maxe.TestMaxent) ... skipped 'slow' testConformerMixture (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok testSegmentMixture (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok testSampleFromHistogram (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testTruncatedGamma (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testTruncatedNormal (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testEnsemble (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testGamma (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testGammaMAP (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testInvGamma (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testInvGammaMAP (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testParameterValidation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions) @see: [CSB 0000132] ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testLogProb (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testParameterEstimation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testParameters (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testRandom (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testSet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testValue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testBindTo (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testIsVirtual (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testSet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testBindTo (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testConstrucor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testFindBaseParameter (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testIsVirtual (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testName (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testSet (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testValue (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testAssignment (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testConstructor (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testParameterChaining (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testProperties (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testAcceptSwap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok testSwap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok testAcceptProposal (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testAcceptanceRate (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testEnergy (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testLastMoveAccepted (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testSample (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testTemperature (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testUpdateStatistics (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testCalcPacc (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok testHamiltonian (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok testPropose (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not positive-semidefinite. initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not positive-semidefinite. momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), ok testHMCPropagator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testHMCPropagatorMM (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testNCMCPropagator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... skipped 'Takes quite a long time to run.' testRWMCPropagator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testHMCStepRENS (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testMDRENS (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testReplicaExchangeMC (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... skipped 'Takes some time, rendered optional by a unit test.' testThermostattedMDRens (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testThermostattedMDRensMM (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testProposeWithMomentum (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok testProposeWithoutMomentum (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok testHMCPropagation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testNonequilibriumStepPropagator (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testPlainMDPropagation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testReducedHamiltonian (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testReducedHamiltonianPerturbation (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testStep (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testCalcPaccSwap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok testProposeSwap (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok testFiveReplicas (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py:866: DeprecationWarning: elementwise comparison failed; this will raise an error in the future. ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ok testFiveReplicasOffset (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testFourReplicas (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testTwoReplicas (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testBoltzmann (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testComposite (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testTsallis (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testNonparametricWHAM (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok testWHAM (build/python-csb-VoQkpJ/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok ---------------------------------------------------------------------- Ran 697 tests in 81.344s OK (skipped=6) make[1]: Leaving directory '/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild dh_auto_install -i -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3.10 setup.py install --root /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb Warning: 'classifiers' should be a list, got type 'tuple' running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' adding license file 'LICENSE.rst' writing manifest file 'csb.egg-info/SOURCES.txt' running install_lib creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10 creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/build.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps/bfit.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps/bfite.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps/buildhmm.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps/csfrag.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps/embd.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps/helloworld.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps/hhfrag.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps/precision.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps/promix.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/apps/hhsearch.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/fragments copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/fragments/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/fragments copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/fragments/rosetta.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/fragments creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/fragments/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/fragments/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/fragments/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/hmm copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/hmm/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/hmm copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/hmm/pseudocounts.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/hmm creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/hmm/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/hmm/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/hmm/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/clans.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/cs.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/dssp.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/fasta.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/hhpred.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/mrc.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/noe.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/procheck.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/psipred.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/svg.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/vasco.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/whatif.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/wwpdb.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/__pycache__/hhpred.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/__pycache__/clans.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/__pycache__/fasta.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/__pycache__/dssp.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/__pycache__/cs.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/__pycache__/mrc.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/__pycache__/noe.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/__pycache__/procheck.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/io/__pycache__/whatif.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/nmr copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/nmr/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/nmr creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/nmr/resources copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/nmr/resources copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/nmr/resources copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/nmr/resources creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/nmr/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/nmr/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/sequence copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/sequence/alignment.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/sequence copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/sequence/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/sequence creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/sequence/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/structure copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/structure/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/structure creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/structure/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/structure/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/structure/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/utils copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/utils/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/utils creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/utils/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/utils/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/utils/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/bio/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/core copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/core/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/core creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/core/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/core/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/core/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/io/plots.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/io/tsv.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/io/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/io/__pycache__/tsv.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/io/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/numeric copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/numeric/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/numeric copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/numeric/integrators.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/numeric creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/numeric/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/numeric/__pycache__/integrators.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/numeric/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/ars.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/maxent.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/mixtures.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/rand.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/scalemixture.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/pdf copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/pdf/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/pdf copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/pdf/parameterized.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/pdf creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/pdf/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/pdf/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/pdf/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/__pycache__/ars.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/__pycache__/maxent.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/__pycache__/mixtures.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/__pycache__/rand.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statistics/__pycache__/scalemixture.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statmech copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statmech/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statmech copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statmech/ensembles.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statmech copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statmech/wham.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statmech creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statmech/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statmech/__pycache__/ensembles.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/statmech/__pycache__/wham.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statmech/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/app.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/fragments copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/fragments creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/fragments/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/hmm copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/hmm creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/hmm/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/clans copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/clans creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/clans/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/cs copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/cs creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/cs/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/fasta copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/fasta creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/hhpred copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/hhpred creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/mrc copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/mrc creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/noe copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/noe creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/noe/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/procheck copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/procheck creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/whatif copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/whatif creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/wwpdb copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/nmr copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/nmr creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/nmr/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/sequence copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/sequence creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/sequence/alignment copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/sequence/alignment creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/sequence/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/sequence/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/structure copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/structure creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/structure/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/utils copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/utils creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/utils/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/core copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/core/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/core creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/core/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/core/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/io/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/numeric copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/numeric/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/numeric copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/numeric/integrators.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/numeric creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/numeric/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/ars.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/maxent.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/mixtures.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/rand.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/pdf copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/pdf copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/pdf creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/pdf/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/samplers copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/samplers creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/samplers/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statmech copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statmech/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statmech copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statmech/ensembles.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statmech copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statmech/wham.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statmech creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statmech/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/cases/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/1C3W_10.mrc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/1d3z.regular.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/1nz9.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/1nz9A.frags -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/2JZC.sum -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/2l01.v2.str -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/2l01.v3.str -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/3p1u.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/3shm_ca.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/ISL5.1.isl -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/Sparky.peaks -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/Xeasy1.peaks -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/Xeasy2.peaks -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/csb.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/d1b24a2.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/d1ea0a1.hhr -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/d1nz0a_.a3m -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/d1nz0a_.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/d1nz0a_.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/mapping.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/mapping2.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/mapping3.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/modified.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/modified2.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/out.clans -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/pdbout.txt -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/standard.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/struct.ali.mfasta -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/test.fa -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/test.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/data/test2.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/data creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/test/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.10_csb/build/csb/__pycache__/__init__.cpython-310.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/__pycache__ byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/build.py to build.cpython-310.pyc /usr/lib/python3.10/dist-packages/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.10/dist-packages/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.10/dist-packages/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps/bfit.py to bfit.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps/bfite.py to bfite.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps/csfrag.py to csfrag.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps/embd.py to embd.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps/helloworld.py to helloworld.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps/precision.py to precision.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps/promix.py to promix.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/clans.py to clans.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/cs.py to cs.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/dssp.py to dssp.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/fasta.py to fasta.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/mrc.py to mrc.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/noe.py to noe.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/procheck.py to procheck.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/psipred.py to psipred.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/svg.py to svg.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/vasco.py to vasco.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/whatif.py to whatif.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/core/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/io/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/io/plots.py to plots.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/io/tsv.py to tsv.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/numeric/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/numeric/integrators.py to integrators.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/ars.py to ars.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/maxent.py to maxent.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/rand.py to rand.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statmech/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/statmech/wham.py to wham.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/app.py to app.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-310.pyc /usr/lib/python3.10/dist-packages/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-310.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-310.pyc running install_egg_info Copying csb.egg-info to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.10/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt running install_scripts Installing csb-bfit script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-bfite script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-buildhmm script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-csfrag script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-embd script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhfrag script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhsearch script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-precision script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-promix script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-test script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin I: pybuild base:237: /usr/bin/python3 setup.py install --root /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb Warning: 'classifiers' should be a list, got type 'tuple' running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' adding license file 'LICENSE.rst' writing manifest file 'csb.egg-info/SOURCES.txt' running install_lib creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9 creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/build.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfit.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfite.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/buildhmm.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/csfrag.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/embd.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/helloworld.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhfrag.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/precision.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/promix.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhsearch.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/rosetta.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/pseudocounts.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/cs.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/dssp.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/fasta.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/hhpred.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/mrc.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/noe.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/psipred.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/svg.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/vasco.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/hhpred.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/clans.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/fasta.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/dssp.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/cs.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/mrc.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/noe.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/procheck.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/whatif.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/alignment.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/plots.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/tsv.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/tsv.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/integrators.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__pycache__/integrators.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/ars.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/maxent.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/mixtures.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/rand.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/scalemixture.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/parameterized.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/ars.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/maxent.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/mixtures.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/rand.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/scalemixture.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/ensembles.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/wham.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/ensembles.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/wham.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/app.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/integrators.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/ars.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/maxent.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/mixtures.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/rand.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__init__.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/ensembles.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/wham.py -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1C3W_10.mrc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.regular.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9A.frags -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2JZC.sum -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v2.str -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v3.str -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3p1u.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3shm_ca.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ISL5.1.isl -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1b24a2.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.a3m -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping2.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping3.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified2.pdb -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/pdbout.txt -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/standard.tsv -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/struct.ali.mfasta -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.fa -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test2.hhm -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__pycache__ creating /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__pycache__ copying /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__pycache__ byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/build.py to build.cpython-39.pyc /usr/lib/python3.9/dist-packages/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.9/dist-packages/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/dist-packages/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/bfit.py to bfit.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/bfite.py to bfite.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/csfrag.py to csfrag.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/embd.py to embd.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/helloworld.py to helloworld.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/precision.py to precision.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/promix.py to promix.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/clans.py to clans.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/cs.py to cs.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/dssp.py to dssp.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/fasta.py to fasta.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/mrc.py to mrc.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/noe.py to noe.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/procheck.py to procheck.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/psipred.py to psipred.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/svg.py to svg.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/vasco.py to vasco.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/whatif.py to whatif.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/plots.py to plots.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/tsv.py to tsv.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/integrators.py to integrators.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/ars.py to ars.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/maxent.py to maxent.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/rand.py to rand.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/wham.py to wham.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/app.py to app.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-39.pyc /usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-39.pyc byte-compiling /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-39.pyc running install_egg_info Copying csb.egg-info to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt running install_scripts Installing csb-bfit script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-bfite script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-buildhmm script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-csfrag script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-embd script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhfrag script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhsearch script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-precision script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-promix script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-test script to /build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg' dh_install mkdir -p debian/csb/usr mv debian/python3-csb/usr/bin debian/csb/usr make[1]: Leaving directory '/build/python-csb-VoQkpJ/python-csb-1.2.5+dfsg' dh_installdocs -i -O--buildsystem=pybuild dh_installchangelogs -i -O--buildsystem=pybuild dh_installman -i -O--buildsystem=pybuild dh_python3 -i -O--buildsystem=pybuild dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild dh_fixperms -i -O--buildsystem=pybuild dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'python3-csb' in '../python3-csb_1.2.5+dfsg-7_all.deb'. dpkg-deb: building package 'csb' in '../csb_1.2.5+dfsg-7_all.deb'. dpkg-genbuildinfo --build=all -O../python-csb_1.2.5+dfsg-7_all.buildinfo dpkg-genchanges --build=all -O../python-csb_1.2.5+dfsg-7_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/python-csb-VoQkpJ /tmp/python-csb-1.2.5+dfsg-7vykax9ka I: cleaning package lists and apt cache... W: deleting files in /tmp: 1nz9.full.pickle W: deleting files in /tmp: 1nz9.model1.pickle W: deleting files in /tmp: tmpr0y21o1_ W: deleting files in /tmp: tmpbpma06t5 W: deleting files in /tmp: tmpieds4dbn W: deleting files in /tmp: tmp8nm8ewfh W: deleting files in /tmp: tmpibjg20y1 W: deleting files in /tmp: tmppsuy0ttx I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.QIRxmHvZ1K... I: success in 3654.5014 seconds md5: csb_1.2.5+dfsg-7_all.deb: OK md5: python3-csb_1.2.5+dfsg-7_all.deb: OK sha1: csb_1.2.5+dfsg-7_all.deb: OK sha1: python3-csb_1.2.5+dfsg-7_all.deb: OK sha256: csb_1.2.5+dfsg-7_all.deb: OK sha256: python3-csb_1.2.5+dfsg-7_all.deb: OK Checksums: OK