--- /tmp/python-cogent-2020.12.21a+dfsg-4w045ojf1/debian/python-cogent-doc_2020.12.21a+dfsg-4_all.deb
+++ python-cogent-doc_2020.12.21a+dfsg-4_all.deb
├── file list
│ @@ -1,3 +1,3 @@
│  -rw-r--r--   0        0        0        4 2021-02-09 13:42:13.000000 debian-binary
│ --rw-r--r--   0        0        0     9276 2021-02-09 13:42:13.000000 control.tar.xz
│ --rw-r--r--   0        0        0   686684 2021-02-09 13:42:13.000000 data.tar.xz
│ +-rw-r--r--   0        0        0     9280 2021-02-09 13:42:13.000000 control.tar.xz
│ +-rw-r--r--   0        0        0   686680 2021-02-09 13:42:13.000000 data.tar.xz
├── control.tar.xz
│ ├── control.tar
│ │ ├── ./md5sums
│ │ │ ├── ./md5sums
│ │ │ │┄ Files differ
├── data.tar.xz
│ ├── data.tar
│ │ ├── ./usr/share/doc/python-cogent-doc/html/api/tree/classes/cogent3.core.tree.PhyloNode.html
│ │ │ @@ -186,15 +186,15 @@
│ │ │  <p>Note: names present in only one of the two trees will count as
│ │ │  mismatches: if you don’t want this behavior, strip out the non-matching
│ │ │  tips first.</p>
│ │ │  </dd></dl>
│ │ │  
│ │ │  <dl class="py method">
│ │ │  <dt id="cogent3.core.tree.PhyloNode.compare_by_tip_distances">
│ │ │ -<code class="sig-name descname">compare_by_tip_distances</code><span class="sig-paren">(</span><em class="sig-param">other</em>, <em class="sig-param">sample=None</em>, <em class="sig-param">dist_f=&lt;function distance_from_r&gt;</em>, <em class="sig-param">shuffle_f=&lt;bound method Random.shuffle of &lt;random.Random object at 0x19293a0&gt;&gt;</em><span class="sig-paren">)</span><a class="headerlink" href="#cogent3.core.tree.PhyloNode.compare_by_tip_distances" title="Permalink to this definition">¶</a></dt>
│ │ │ +<code class="sig-name descname">compare_by_tip_distances</code><span class="sig-paren">(</span><em class="sig-param">other</em>, <em class="sig-param">sample=None</em>, <em class="sig-param">dist_f=&lt;function distance_from_r&gt;</em>, <em class="sig-param">shuffle_f=&lt;bound method Random.shuffle of &lt;random.Random object at 0x221f270&gt;&gt;</em><span class="sig-paren">)</span><a class="headerlink" href="#cogent3.core.tree.PhyloNode.compare_by_tip_distances" title="Permalink to this definition">¶</a></dt>
│ │ │  <dd><p>Compares self to other using tip-to-tip distance matrices.</p>
│ │ │  <p>Value returned is dist_f(m1, m2) for the two matrices. Default is
│ │ │  to use the Pearson correlation coefficient, with +1 giving a distance
│ │ │  of 0 and -1 giving a distance of +1 (the madimum possible value).
│ │ │  Depending on the application, you might instead want to use
│ │ │  distance_from_r_squared, which counts correlations of both +1 and -1
│ │ │  as identical (0 distance).</p>
│ │ ├── ./usr/share/doc/python-cogent-doc/html/searchindex.js
│ │ │ ├── js-beautify {}
│ │ │ │ @@ -830,15 +830,15 @@
│ │ │ │          "2": "py:method",
│ │ │ │          "3": "py:attribute",
│ │ │ │          "4": "py:exception"
│ │ │ │      },
│ │ │ │      terms: {
│ │ │ │          "0015588630350439783": 93,
│ │ │ │          "005": [16, 17],
│ │ │ │ -        "0x19293a0": 33,
│ │ │ │ +        "0x221f270": 33,
│ │ │ │          "100": [7, 12, 16, 17, 18, 31, 33, 60, 64],
│ │ │ │          "1000": 99,
│ │ │ │          "1978": 86,
│ │ │ │          "1981": 99,
│ │ │ │          "1987": 42,
│ │ │ │          "1992": 66,
│ │ │ │          "1994": [83, 90],