Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/python-cobra/python-cobra_0.21.0-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/python-cobra-0.21.0-19959yk9b/python-cobra_0.21.0-1_amd64.buildinfo Get source package info: python-cobra=0.21.0-1 Source URL: http://snapshot.notset.fr/mr/package/python-cobra/0.21.0-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.49 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-7 bsdutils=1:2.36.1-7 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20210119 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 cython3=0.29.21-3+b1 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.3 debianutils=4.11.2 dh-autoreconf=20 dh-python=4.20201102 dh-strip-nondeterminism=1.11.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210201-1 file=1:5.39-3 findutils=4.8.0-1 fonts-lyx=2.3.6-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libamd2=1:5.8.1+dfsg-2 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libblas-dev=3.9.0-3 libblas3=3.9.0-3 libblkid1=2.36.1-7 libbrotli1=1.0.9-2+b2 libbsd0=0.11.3-1 libbtf1=1:5.8.1+dfsg-2 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcamd2=1:5.8.1+dfsg-2 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libccolamd2=1:5.8.1+dfsg-2 libcholmod3=1:5.8.1+dfsg-2 libcolamd2=1:5.8.1+dfsg-2 libcom-err2=1.45.7-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libcxsparse3=1:5.8.1+dfsg-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.256 libdebhelper-perl=13.3.3 libdeflate0=1.7-1 libdpkg-perl=1.20.7.1 libelf1=0.183-1 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.11.0-1 libfreetype6=2.10.4+dfsg-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgfortran5=10.2.1-6 libglpk-dev=5.0-1 libglpk40=5.0-1 libgmp-dev=2:6.2.1+dfsg-1 libgmp10=2:6.2.1+dfsg-1 libgmpxx4ldbl=2:6.2.1+dfsg-1 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgraphblas3=1:5.8.1+dfsg-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-6 libimagequant0=2.12.2-1.1 libisl23=0.23-1 libitm1=10.2.1-6 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.0.5-2 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui=1.12.1+dfsg-8 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libklu1=1:5.8.1+dfsg-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack-dev=3.9.0-3 liblapack3=3.9.0-3 liblcms2-2=2.12~rc1-2 libldl2=1:5.8.1+dfsg-2 liblsan0=10.2.1-6 libltdl7=2.4.6-15 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.3-3 libmetis5=5.1.0.dfsg-7 libmongoose2=1:5.8.1+dfsg-2 libmount1=2.36.1-7 libmpc3=1.2.0-1 libmpdec3=2.5.1-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20201114-2 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-4 libpam-modules-bin=1.4.0-4 libpam-runtime=1.4.0-4 libpam0g=1.4.0-4 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-2 libpipeline1=1.5.3-1 libpng16-16=1.6.37-3 libpython3-dev=3.9.1-1 libpython3-stdlib=3.9.1-1 libpython3.9=3.9.1-4 libpython3.9-dev=3.9.1-4 libpython3.9-minimal=3.9.1-4 libpython3.9-stdlib=3.9.1-4 libquadmath0=10.2.1-6 librbio2=1:5.8.1+dfsg-2 libreadline8=8.1-1 libsbml5=5.19.0+dfsg-1 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsigsegv2=2.13-1 libsliplu1=1:5.8.1+dfsg-2 libsmartcols1=2.36.1-7 libspqr2=1:5.8.1+dfsg-2 libsqlite3-0=3.34.1-1 libssl1.1=1.1.1i-3 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsuitesparse-dev=1:5.8.1+dfsg-2 libsuitesparseconfig5=1:5.8.1+dfsg-2 libsystemd0=247.3-1 libtiff5=4.2.0-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.3-1 libumfpack5=1:5.8.1+dfsg-2 libunistring2=0.9.10-4 libuuid1=2.36.1-7 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.13-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.68 make=4.3-4 man-db=2.9.4-1 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 openssl=1.1.1i-3 patch=2.7.6-7 perl=5.32.1-2 perl-base=5.32.1-2 perl-modules-5.32=5.32.1-2 po-debconf=1.0.21+nmu1 python-matplotlib-data=3.3.4-1 python-pip-whl=20.1.1-2 python3=3.9.1-1 python3-appdirs=1.4.4-1 python3-attr=20.3.0-1 python3-certifi=2020.6.20-1 python3-chardet=4.0.0-1 python3-colorama=0.4.4-1 python3-commonmark=0.9.1-3 python3-cpuinfo=5.0.0-2 python3-cycler=0.10.0-3 python3-dateutil=2.8.1-5 python3-depinfo=1.6.0-1 python3-dev=3.9.1-1 python3-diskcache=5.2.1-2 python3-distutils=3.9.1-2 python3-future=0.18.2-5 python3-h11=0.12.0-1 python3-httpcore=0.12.2-1 python3-httpx=0.16.1-1 python3-idna=2.10-1 python3-importlib-metadata=1.6.0-2 python3-iniconfig=1.1.1-1 python3-jsonschema=3.2.0-3 python3-kiwisolver=1.3.1-1+b1 python3-lib2to3=3.9.1-2 python3-matplotlib=3.3.4-1 python3-minimal=3.9.1-1 python3-more-itertools=4.2.0-3 python3-mpmath=1.2.0-1 python3-numpy=1:1.19.5-1 python3-optlang=1.4.4-2 python3-packaging=20.9-1 python3-pandas=1.1.5+dfsg-2 python3-pandas-lib=1.1.5+dfsg-2 python3-pil=8.1.0-1 python3-pip=20.1.1-2 python3-pipdeptree=2.0.0-1 python3-pkg-resources=52.0.0-1 python3-pluggy=0.13.0-6 python3-py=1.10.0-1 python3-pydantic=1.7.3-1 python3-pygments=2.7.1+dfsg-1 python3-pyparsing=2.4.7-1 python3-pyrsistent=0.15.5-1+b3 python3-pytest=6.0.2-2 python3-pytest-benchmark=3.2.2-2 python3-requests=2.25.1+dfsg-2 python3-rfc3986=1.4.0-3 python3-rich=9.9.0-1 python3-ruamel.yaml=0.16.12-2 python3-ruamel.yaml.clib=0.2.2-1+b2 python3-sbml5=5.19.0+dfsg-1 python3-setuptools=52.0.0-1 python3-simplejson=3.17.2-1 python3-six=1.15.0-2 python3-sniffio=1.1.0-1 python3-swiglpk=4.65.1-1 python3-sympy=1.7.1-1 python3-tabulate=0.8.7-0.1 python3-toml=0.10.1-1 python3-typing-extensions=3.7.4.3-1 python3-tz=2021.1-1 python3-urllib3=1.26.2-1 python3-wheel=0.34.2-1 python3-zipp=1.0.0-3 python3.9=3.9.1-4 python3.9-dev=3.9.1-4 python3.9-minimal=3.9.1-4 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.14 swig=4.0.2-1 swig4.0=4.0.2-1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 ttf-bitstream-vera=1.10-8.1 tzdata=2021a-1 util-linux=2.36.1-7 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211009T024746Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210209T091207Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d python-cobra=0.21.0-1 && mkdir -p /build/python-cobra-3YjSY0 && dpkg-source --no-check -x /*.dsc /build/python-cobra-3YjSY0/python-cobra-0.21.0 && chown -R builduser:builduser /build/python-cobra-3YjSY0" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-cobra-3YjSY0/python-cobra-0.21.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612856596" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/python-cobra-3YjSY0 /tmp/python-cobra-0.21.0-19959yk9b bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210209T091207Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.gwpZ7LL7_4 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.gwpZ7LL7_4 Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-7). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210209T091207Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210209T091207Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1079 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4663 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211009T024746Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210209T091207Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.gwpZ7LL7_4 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211009T024746Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210209T091207Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20211009T024746Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20211009T024746Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20211009T024746Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211009T024746Z unstable/main amd64 Packages [11.9 MB] Fetched 34.6 MB in 29s (1179 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.gwpZ7LL7_4 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d python-cobra=0.21.0-1 && mkdir -p /build/python-cobra-3YjSY0 && dpkg-source --no-check -x /*.dsc /build/python-cobra-3YjSY0/python-cobra-0.21.0 && chown -R builduser:builduser /build/python-cobra-3YjSY0"' exec /tmp/mmdebstrap.gwpZ7LL7_4 Reading package lists... NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-cobra.git Please use: git clone https://salsa.debian.org/med-team/python-cobra.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2585 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-cobra 0.21.0-1 (dsc) [3071 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-cobra 0.21.0-1 (tar) [2573 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-cobra 0.21.0-1 (diff) [8964 B] Fetched 2585 kB in 2s (1127 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'python-cobra_0.21.0-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting python-cobra in /build/python-cobra-3YjSY0/python-cobra-0.21.0 dpkg-source: info: unpacking python-cobra_0.21.0.orig.tar.gz dpkg-source: info: unpacking python-cobra_0.21.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mathjax.patch dpkg-source: info: applying no_importlib_resources_for_test.patch dpkg-source: info: applying xfail_test_show_versions.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-cobra-3YjSY0/python-cobra-0.21.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612856596" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.gwpZ7LL7_4 dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.21.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-cobra-3YjSY0/python-cobra-0.21.0' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -f cobra/solvers/cglpk.c rm -rf .pytest_cache make[1]: Leaving directory '/build/python-cobra-3YjSY0/python-cobra-0.21.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra copying src/cobra/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra copying src/cobra/exceptions.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/deletion.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/parsimonious.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/geometric.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/reaction.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/moma.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/variability.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/loopless.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/room.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/gapfilling.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/helpers.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/fastcc.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/species.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/formula.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/singleton.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/group.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/reaction.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/metabolite.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/dictlist.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/object.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/solution.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/configuration.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/model.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/validate.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/modify.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/annotate.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/delete.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/mat.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/yaml.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/json.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/dict.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/sbml.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test copying src/cobra/test/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test copying src/cobra/test/test_medium.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test copying src/cobra/test/test_manipulation.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test copying src/cobra/test/conftest.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium copying src/cobra/medium/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium copying src/cobra/medium/boundary_types.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium copying src/cobra/medium/minimal_medium.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium copying src/cobra/medium/annotations.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/metabolite_summary.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/model_summary.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/summary.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/reaction_summary.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/util.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/solver.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/array.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/context.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/sampling.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/achr.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/optgp.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/hr_sampler.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/biomodels_repository.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/abstract_model_repository.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/bigg_models_repository.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/load.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/schema_v1.json -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini.json -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini.pickle -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/valid_annotation_output.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_fbc1.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_cobra.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/example_notes.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/invalid2.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/JSON_with_inf_bounds.json -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/raven.pickle -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/salmonella.genes -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/iJO1366.pickle -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini.mat -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/update_pickles.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_fbc2.xml.bz2 -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini.yml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/salmonella.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/textbook_pfba_fva.json -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/valid_annotation_format.json -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/iJO1366.xml.gz -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/textbook_solution.pickle -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/invalid0.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/annotation.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_fbc2.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/invalid_annotation_format.json -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/salmonella.media -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/e_coli_core.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/validation.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_fbc2.xml.gz -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/salmonella.pickle -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/invalid1.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/fbc_ex1.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/raven.mat -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/textbook_fva.json -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/textbook.xml.gz -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/fbc_ex2.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data dh_auto_test -a -O--buildsystem=pybuild I: pybuild base:232: cd /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build; python3.9 -m pytest ============================= test session starts ============================== platform linux -- Python 3.9.1+, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/python-cobra-3YjSY0/python-cobra-0.21.0, configfile: tox.ini plugins: benchmark-3.2.2 collected 28 items cobra/test/test_manipulation.py ........... [ 39%] cobra/test/test_medium.py ................. [100%] =============================== warnings summary =============================== cobra/core/dictlist.py:215 /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/dictlist.py:215: SyntaxWarning: "is" with a literal. Did you mean "=="? if current_length is 0: cobra/core/gene.py:247 /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py:247: DeprecationWarning: invalid escape sequence \( the_gene_re = re.compile("(^|(?<=( |\()))%s(?=( |\)|$))" % re.escape(self.id)) cobra/core/gene.py:267 /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py:267: DeprecationWarning: invalid escape sequence \( "(^|(?<=( |\()))%s(?=( |\)|$))" % re.escape(other_gene.id) cobra/core/reaction.py:43 /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/reaction.py:43: DeprecationWarning: invalid escape sequence \s compartment_finder = re.compile("^\s*(\[[A-Za-z]\])\s*:*") cobra/flux_analysis/gapfilling.py:13 /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/gapfilling.py:13: DeprecationWarning: invalid escape sequence \s """Class for performing gap filling. .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_escape_ids /usr/lib/python3/dist-packages/optlang/interface.py:1358: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.10 it will stop working if isinstance(stuff, collections.Iterable): .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_gene_knockout_computation .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_sbo_annotation .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_output_type .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_demand .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_sink /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/model.py:544: DeprecationWarning: add_reaction deprecated. Use add_reactions instead warn("add_reaction deprecated. Use add_reactions instead", DeprecationWarning) .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/model.py:298: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn( .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py: 55 warnings /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/minimal_medium.py:104: DeprecationWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning. medium = pd.Series() .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestErrorsAndExceptions::test_no_names_or_boundary_reactions /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/boundary_types.py:49: DeprecationWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning. matches = pd.Series( -- Docs: https://docs.pytest.org/en/stable/warnings.html Computing stats ... Computing stats ... group 1/1 Computing stats ... group 1/1: min Computing stats ... group 1/1: min (1/2) Computing stats ... group 1/1: min (2/2) Computing stats ... group 1/1: min (1/2) Computing stats ... group 1/1: min (2/2) Computing stats ... group 1/1: max Computing stats ... group 1/1: max (1/2) Computing stats ... group 1/1: max (2/2) Computing stats ... group 1/1: max (1/2) Computing stats ... group 1/1: max (2/2) Computing stats ... group 1/1: mean Computing stats ... group 1/1: mean (1/2) Computing stats ... group 1/1: mean (2/2) Computing stats ... group 1/1: mean (1/2) Computing stats ... group 1/1: mean (2/2) Computing stats ... group 1/1: median Computing stats ... group 1/1: median (1/2) Computing stats ... group 1/1: median (2/2) Computing stats ... group 1/1: median (1/2) Computing stats ... group 1/1: median (2/2) Computing stats ... group 1/1: iqr Computing stats ... group 1/1: iqr (1/2) Computing stats ... group 1/1: iqr (2/2) Computing stats ... group 1/1: iqr (1/2) Computing stats ... group 1/1: iqr (2/2) Computing stats ... group 1/1: stddev Computing stats ... group 1/1: stddev (1/2) Computing stats ... group 1/1: stddev (2/2) Computing stats ... group 1/1: stddev (1/2) Computing stats ... group 1/1: stddev (2/2) Computing stats ... group 1/1: ops Computing stats ... group 1/1: ops (1/2) Computing stats ... group 1/1: ops (2/2) Computing stats ... group 1/1: ops (1/2) Computing stats ... group 1/1: ops (2/2) Computing stats ... group 1/1: ops: outliers Computing stats ... group 1/1: ops: outliers (1/2) Computing stats ... group 1/1: ops: outliers (2/2) Computing stats ... group 1/1: ops: rounds Computing stats ... group 1/1: ops: rounds (1/2) Computing stats ... group 1/1: ops: rounds (2/2) Computing stats ... group 1/1: ops: iterations Computing stats ... group 1/1: ops: iterations (1/2) Computing stats ... group 1/1: ops: iterations (2/2) --------------------------------------------------------------------------------------- benchmark: 2 tests --------------------------------------------------------------------------------------- Name (time in ms) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- test_benchmark_medium_mip 17.0305 (1.0) 62.2381 (1.08) 33.9555 (1.02) 13.6585 (1.02) 27.3498 (1.04) 23.3550 (1.18) 6;0 29.4503 (0.98) 21 1 test_benchmark_medium_linear 19.6686 (1.15) 57.4228 (1.0) 33.2323 (1.0) 13.3694 (1.0) 26.3931 (1.0) 19.8479 (1.0) 5;0 30.0912 (1.0) 19 1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean ======================= 28 passed, 73 warnings in 18.04s ======================= create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra running install running build running build_py running install_lib creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9 creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/.benchmarks creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/deletion.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/geometric.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/reaction.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/moma.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/variability.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/loopless.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/room.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/helpers.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/fastcc.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/species.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/formula.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/singleton.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/group.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/reaction.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/metabolite.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/dictlist.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/object.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/solution.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/object.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/model.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/reaction.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/metabolite.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/dictlist.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/solution.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/configuration.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/group.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/species.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/singleton.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/gene.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/formula.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/configuration.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/model.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/validate.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/modify.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/annotate.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/delete.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/validate.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/delete.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/modify.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/schema_v1.json -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/mat.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/yaml.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/biomodels_repository.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/load.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/load.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/json.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/dict.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/sbml.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/sbml.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/dict.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/json.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/yaml.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/mat.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.json -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.pickle -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/valid_annotation_output.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc1.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_cobra.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/example_notes.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid2.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/JSON_with_inf_bounds.json -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/raven.pickle -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.genes -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/iJO1366.pickle -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.mat -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/update_pickles.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml.bz2 -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.yml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_pfba_fva.json -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/valid_annotation_format.json -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/iJO1366.xml.gz -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_solution.pickle -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid0.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/annotation.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid_annotation_format.json -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.media -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/e_coli_core.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/validation.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml.gz -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.pickle -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid1.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/fbc_ex1.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/raven.mat -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_fva.json -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook.xml.gz -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/fbc_ex2.xml -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/test_manipulation.cpython-39-pytest-6.0.2.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/conftest.cpython-39-pytest-6.0.2.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/test_medium.cpython-39-pytest-6.0.2.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/conftest.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/boundary_types.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/minimal_medium.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/annotations.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/annotations.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/metabolite_summary.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/model_summary.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/summary.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/reaction_summary.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/summary.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/model_summary.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/exceptions.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/util.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/solver.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/array.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/context.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/array.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/context.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/solver.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/util.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/sampling.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__init__.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/achr.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/optgp.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/sampling.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/achr.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/optgp.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/hr_sampler.py -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling creating /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/__pycache__/exceptions.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__ copying /build/python-cobra-3YjSY0/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__ byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/room.py to room.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/species.py to species.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/formula.py to formula.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/singleton.py to singleton.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/group.py to group.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/reaction.py to reaction.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/metabolite.py to metabolite.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/dictlist.py to dictlist.cpython-39.pyc /usr/lib/python3.9/dist-packages/cobra/core/dictlist.py:215: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/object.py to object.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/gene.py to gene.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/solution.py to solution.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/configuration.py to configuration.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/model.py to model.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/validate.py to validate.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/modify.py to modify.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/delete.py to delete.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/mat.py to mat.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/yaml.py to yaml.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/load.py to load.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/json.py to json.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/dict.py to dict.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/sbml.py to sbml.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_medium.py to test_medium.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation.py to test_manipulation.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/conftest.py to conftest.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/annotations.py to annotations.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/summary.py to summary.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/exceptions.py to exceptions.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/util.py to util.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/solver.py to solver.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/array.py to array.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/context.py to context.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/sampling.py to sampling.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/achr.py to achr.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/optgp.py to optgp.cpython-39.pyc byte-compiling /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-39.pyc running install_egg_info running egg_info creating src/cobra.egg-info writing src/cobra.egg-info/PKG-INFO writing dependency_links to src/cobra.egg-info/dependency_links.txt writing requirements to src/cobra.egg-info/requires.txt writing top-level names to src/cobra.egg-info/top_level.txt writing manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'src/cobra.egg-info/SOURCES.txt' Copying src/cobra.egg-info to /build/python-cobra-3YjSY0/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra-0.21.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/python-cobra-3YjSY0/python-cobra-0.21.0' dh_install -X update_pickles.py --package=python-cobra-data dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). dh_install --remaining-packages find debian -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/python-cobra-3YjSY0/python-cobra-0.21.0' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild I: dh_python3 pydist:229: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -a -O--buildsystem=pybuild dh_strip -a -a -O--buildsystem=pybuild dh_makeshlibs -a -a -O--buildsystem=pybuild dh_shlibdeps -a -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.21.0-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../python-cobra_0.21.0-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/python-cobra-3YjSY0 /tmp/python-cobra-0.21.0-19959yk9b I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.gwpZ7LL7_4... I: success in 517.0904 seconds md5: python3-cobra_0.21.0-1_amd64.deb: OK sha1: python3-cobra_0.21.0-1_amd64.deb: OK sha256: python3-cobra_0.21.0-1_amd64.deb: OK Checksums: OK