Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/python-bx/python-bx_0.8.9-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/python-bx-0.8.9-1zq2mibhx/python-bx_0.8.9-1_amd64.buildinfo Get source package info: python-bx=0.8.9-1 Source URL: http://snapshot.notset.fr/mr/package/python-bx/0.8.9-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.49 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-7 bsdutils=1:2.36.1-7 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 cython3=0.29.21-3+b1 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.3 debianutils=4.11.2 dh-autoreconf=20 dh-python=4.20201102 dh-strip-nondeterminism=1.11.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210201-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libblas3=3.9.0-3 libblkid1=2.36.1-7 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcom-err2=1.46.1-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.256 libdebhelper-perl=13.3.3 libdpkg-perl=1.20.7.1 libelf1=0.183-1 libexpat1=2.2.10-2 libexpat1-dev=2.2.10-2 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.11.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-3 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgfortran5=10.2.1-6 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-6 libisl23=0.23-1 libitm1=10.2.1-6 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack3=3.9.0-3 liblsan0=10.2.1-6 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 liblzo2-2=2.10-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-7 libmpc3=1.2.0-1 libmpdec3=2.5.1-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20201114-2 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-4 libpam-modules-bin=1.4.0-4 libpam-runtime=1.4.0-4 libpam0g=1.4.0-4 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-2 libpipeline1=1.5.3-1 libpython3-all-dev=3.9.1-1 libpython3-dev=3.9.1-1 libpython3-stdlib=3.9.1-1 libpython3.9=3.9.1-4 libpython3.9-dev=3.9.1-4 libpython3.9-minimal=3.9.1-4 libpython3.9-stdlib=3.9.1-4 libquadmath0=10.2.1-6 libreadline8=8.1-1 libseccomp2=2.5.1-1 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.36.1-7 libsqlite3-0=3.34.1-3 libssl1.1=1.1.1j-1 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.3-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.3-1 libunistring2=0.9.10-4 libuuid1=2.36.1-7 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.13-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 patch=2.7.6-7 perl=5.32.1-2 perl-base=5.32.1-2 perl-modules-5.32=5.32.1-2 po-debconf=1.0.21+nmu1 python3=3.9.1-1 python3-all=3.9.1-1 python3-all-dev=3.9.1-1 python3-dev=3.9.1-1 python3-distutils=3.9.2-1 python3-lib2to3=3.9.2-1 python3-lzo=1.12-3+b4 python3-minimal=3.9.1-1 python3-nose=1.3.7-7 python3-numpy=1:1.19.5-1 python3-pkg-resources=52.0.0-1 python3-setuptools=52.0.0-1 python3-six=1.15.0-2 python3.9=3.9.1-4 python3.9-dev=3.9.1-4 python3.9-minimal=3.9.1-4 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-5 tar=1.34+dfsg-1 tzdata=2021a-1 util-linux=2.36.1-7 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210825T085930Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210218T111050Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d python-bx=0.8.9-1 && mkdir -p /build/python-bx-o1IuMb && dpkg-source --no-check -x /*.dsc /build/python-bx-o1IuMb/python-bx-0.8.9 && chown -R builduser:builduser /build/python-bx-o1IuMb" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-bx-o1IuMb/python-bx-0.8.9 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1614199563" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/python-bx-o1IuMb /tmp/python-bx-0.8.9-1zq2mibhx bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210218T111050Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.ckLdfDUvWv as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.ckLdfDUvWv Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-7). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210218T111050Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210218T111050Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1051 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4662 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210825T085930Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210218T111050Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.ckLdfDUvWv Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210825T085930Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210218T111050Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210825T085930Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210825T085930Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210825T085930Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210825T085930Z unstable/main amd64 Packages [11.9 MB] Fetched 34.6 MB in 29s (1181 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.ckLdfDUvWv I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d python-bx=0.8.9-1 && mkdir -p /build/python-bx-o1IuMb && dpkg-source --no-check -x /*.dsc /build/python-bx-o1IuMb/python-bx-0.8.9 && chown -R builduser:builduser /build/python-bx-o1IuMb"' exec /tmp/mmdebstrap.ckLdfDUvWv Reading package lists... NOTICE: 'python-bx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-bx.git Please use: git clone https://salsa.debian.org/med-team/python-bx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1663 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-bx 0.8.9-1 (dsc) [2182 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-bx 0.8.9-1 (tar) [1652 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-bx 0.8.9-1 (diff) [9332 B] Fetched 1663 kB in 1s (1285 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'python-bx_0.8.9-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting python-bx in /build/python-bx-o1IuMb/python-bx-0.8.9 dpkg-source: info: unpacking python-bx_0.8.9.orig.tar.gz dpkg-source: info: unpacking python-bx_0.8.9-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying shebang.patch dpkg-source: info: applying no-download.patch dpkg-source: info: applying fix_BIN_OFFSETS_MAX I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-bx-o1IuMb/python-bx-0.8.9 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1614199563" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.ckLdfDUvWv dpkg-buildpackage: info: source package python-bx dpkg-buildpackage: info: source version 0.8.9-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-bx-o1IuMb/python-bx-0.8.9' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it find -name "*.pyx" | sed 's/pyx$/c/' | xargs rm -f grep -rli "Generated by Cython" lib/ | xargs -r rm rm -rf lib/bx_python.egg-info make[1]: Leaving directory '/build/python-bx-o1IuMb/python-bx-0.8.9' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py copying lib/psyco_full.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/gene_reader.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/binned_array_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/bitset_utils.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/wiggle.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/filter.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/interval_index_file_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/seqmapping.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/interval_index_file.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/bitset_builders.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/binned_array.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/wiggle_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/seqmapping_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/bitset_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras copying lib/bx_extras/pstat.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras copying lib/bx_extras/pyparsing.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras copying lib/bx_extras/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras copying lib/bx_extras/lrucache.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras copying lib/bx_extras/stats.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras copying lib/bx_extras/fpconst.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras copying lib/bx_extras/fpconst_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo copying lib/bx/phylo/newick_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo copying lib/bx/phylo/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo copying lib/bx/phylo/phast_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo copying lib/bx/phylo/phast.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo copying lib/bx/phylo/newick.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/tabular copying lib/bx/tabular/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/tabular copying lib/bx/tabular/io.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/tabular creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/filecache_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/bgzf_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/seeklzop.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/readlengths.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/seekbzip2_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/seeklzop_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/seekbzip2.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/cdb_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/cdb.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/binary_file.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/filecache.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi copying lib/bx/bbi/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi copying lib/bx/bbi/bigwig_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals copying lib/bx/intervals/intersection_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals copying lib/bx/intervals/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals copying lib/bx/intervals/io.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals copying lib/bx/intervals/cluster_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals copying lib/bx/intervals/random_intervals.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/seq_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/seq.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/twobit_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/fasta_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/core.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/qdna.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/nib_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/fasta.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/qdna_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/twobit.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/nib.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intseq copying lib/bx/intseq/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intseq creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/epo_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/score.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/lav.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/epo.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/core.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/score_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/lav_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/axt.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/maf_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/maf.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/maf_select_motifs.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/bed_score_aligned_pwm.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_score_positions.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_score_motifs.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_score_maf.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/bed_score_aligned_string.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/position_weight_matrix.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays copying lib/bx/arrays/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays copying lib/bx/arrays/array_tree_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif copying lib/bx/motif/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif copying lib/bx/motif/pwm_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif copying lib/bx/motif/pwm.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook copying lib/bx/cookbook/argparse.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook copying lib/bx/cookbook/progress_bar.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook copying lib/bx/cookbook/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook copying lib/bx/cookbook/doc_optparse.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook copying lib/bx/cookbook/attribute.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/concat.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/quicksect.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/intersect.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/subtract.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/merge.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/join.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/base_coverage.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/coverage.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/find_clusters.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/complement.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/quality.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/core.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/cpg.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/sitemask_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools copying lib/bx/align/tools/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools copying lib/bx/align/tools/fuse.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools copying lib/bx/align/tools/tile.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools copying lib/bx/align/tools/chop.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools copying lib/bx/align/tools/thread.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io copying lib/bx/motif/io/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io copying lib/bx/motif/io/transfac_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io copying lib/bx/motif/io/transfac.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io creating /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/logo copying lib/bx/motif/logo/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/logo copying lib/bx/motif/logo/template.ps -> /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/logo Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma running build_ext cythoning lib/bx/bitset.pyx to lib/bx/bitset.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/bitset.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/intervals/intersection.pyx to lib/bx/intervals/intersection.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/intervals/intersection.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/align/_core.pyx to lib/bx/align/_core.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/align/_core.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/seq/_nib.pyx to lib/bx/seq/_nib.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/seq/_nib.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/seq/_twobit.pyx to lib/bx/seq/_twobit.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/seq/_twobit.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/_seqmapping.pyx to lib/bx/_seqmapping.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/_seqmapping.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/misc/bgzf.pyx to lib/bx/misc/bgzf.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/misc/bgzf.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/intervals/cluster.pyx to lib/bx/intervals/cluster.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/intervals/cluster.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/pwm/_position_weight_matrix.pyx to lib/bx/pwm/_position_weight_matrix.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/pwm/_position_weight_matrix.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/motif/_pwm.pyx to lib/bx/motif/_pwm.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/motif/_pwm.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/arrays/array_tree.pyx to lib/bx/arrays/array_tree.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/arrays/array_tree.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bpt_file.pyx to lib/bx/bbi/bpt_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/bbi/bpt_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/cirtree_file.pyx to lib/bx/bbi/cirtree_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/bbi/cirtree_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bbi_file.pyx to lib/bx/bbi/bbi_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/bbi/bbi_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bigwig_file.pyx to lib/bx/bbi/bigwig_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/bbi/bigwig_file.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bigbed_file.pyx to lib/bx/bbi/bigbed_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/bbi/bigbed_file.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/align/_epo.pyx to lib/bx/align/_epo.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/align/_epo.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/arrays/bed.pyx to lib/bx/arrays/bed.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/arrays/bed.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/arrays/wiggle.pyx to lib/bx/arrays/wiggle.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/arrays/wiggle.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: lib/bx/arrays/wiggle.pyx:94:20: Unreachable code cythoning lib/bx/align/sitemask/_cpg.pyx to lib/bx/align/sitemask/_cpg.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/align/sitemask/_cpg.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/intseq/ngramcount.pyx to lib/bx/intseq/ngramcount.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/intseq/ngramcount.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/misc/_seekbzip2.pyx to lib/bx/misc/_seekbzip2.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-o1IuMb/python-bx-0.8.9/lib/bx/misc/_seekbzip2.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.bitset' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/lib creating build/temp.linux-x86_64-3.9/lib/bx creating build/temp.linux-x86_64-3.9/src creating build/temp.linux-x86_64-3.9/src/kent x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.9 -c lib/bx/bitset.c -o build/temp.linux-x86_64-3.9/lib/bx/bitset.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.9 -c src/binBits.c -o build/temp.linux-x86_64-3.9/src/binBits.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.9 -c src/kent/bits.c -o build/temp.linux-x86_64-3.9/src/kent/bits.o src/kent/bits.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 9 | static char const rcsid[] = "$Id: bits.c,v 1.20 2008/03/25 16:32:31 angie Exp $"; | ^~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.9 -c src/kent/common.c -o build/temp.linux-x86_64-3.9/src/kent/common.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/bitset.o build/temp.linux-x86_64-3.9/src/binBits.o build/temp.linux-x86_64-3.9/src/kent/bits.o build/temp.linux-x86_64-3.9/src/kent/common.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bitset.cpython-39-x86_64-linux-gnu.so building 'bx.intervals.intersection' extension creating build/temp.linux-x86_64-3.9/lib/bx/intervals x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/intervals/intersection.c -o build/temp.linux-x86_64-3.9/lib/bx/intervals/intersection.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/intervals/intersection.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/intersection.cpython-39-x86_64-linux-gnu.so building 'bx.align._core' extension creating build/temp.linux-x86_64-3.9/lib/bx/align x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/align/_core.c -o build/temp.linux-x86_64-3.9/lib/bx/align/_core.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/align/_core.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/_core.cpython-39-x86_64-linux-gnu.so building 'bx.seq._nib' extension creating build/temp.linux-x86_64-3.9/lib/bx/seq x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/seq/_nib.c -o build/temp.linux-x86_64-3.9/lib/bx/seq/_nib.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/seq/_nib.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/_nib.cpython-39-x86_64-linux-gnu.so building 'bx.seq._twobit' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/seq/_twobit.c -o build/temp.linux-x86_64-3.9/lib/bx/seq/_twobit.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/seq/_twobit.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/_twobit.cpython-39-x86_64-linux-gnu.so building 'bx._seqmapping' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/_seqmapping.c -o build/temp.linux-x86_64-3.9/lib/bx/_seqmapping.o lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_6translate’: lib/bx/_seqmapping.c:1797:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 1797 | __pyx_t_1 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 52, __pyx_L1_error) | ^~~~~~~~~ In file included from /usr/include/python3.9/Python.h:151, from lib/bx/_seqmapping.c:4: /usr/include/python3.9/abstract.h:354:17: note: declared here 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_8translate_list’: lib/bx/_seqmapping.c:2000:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 2000 | __pyx_t_7 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_7 == ((int)-1))) __PYX_ERR(0, 75, __pyx_L1_error) | ^~~~~~~~~ In file included from /usr/include/python3.9/Python.h:151, from lib/bx/_seqmapping.c:4: /usr/include/python3.9/abstract.h:354:17: note: declared here 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping_6translate’: lib/bx/_seqmapping.c:3075:3: warning: ‘PyObject_AsReadBuffer’ is deprecated [-Wdeprecated-declarations] 3075 | __pyx_t_1 = PyObject_AsReadBuffer(__pyx_v_src, ((void const **)(&__pyx_v_s_buf)), (&__pyx_v_s_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 132, __pyx_L1_error) | ^~~~~~~~~ In file included from /usr/include/python3.9/Python.h:151, from lib/bx/_seqmapping.c:4: /usr/include/python3.9/abstract.h:343:17: note: declared here 343 | PyAPI_FUNC(int) PyObject_AsReadBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c:3176:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 3176 | __pyx_t_1 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 137, __pyx_L1_error) | ^~~~~~~~~ In file included from /usr/include/python3.9/Python.h:151, from lib/bx/_seqmapping.c:4: /usr/include/python3.9/abstract.h:354:17: note: declared here 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~~ In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping___cinit__’, inlined from ‘__pyx_pw_2bx_11_seqmapping_15IntToIntMapping_1__cinit__’ at lib/bx/_seqmapping.c:2710:13, inlined from ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’ at lib/bx/_seqmapping.c:4986:7: lib/bx/_seqmapping.c:2744:33: warning: argument 1 value ‘18446744073709551612’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2744 | __pyx_v_self->table = ((int *)malloc((__pyx_v_in_size * (sizeof(int))))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.9/Python.h:34, from lib/bx/_seqmapping.c:4: lib/bx/_seqmapping.c: In function ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’: /usr/include/stdlib.h:539:14: note: in a call to allocation function ‘malloc’ declared here 539 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/_seqmapping.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/_seqmapping.cpython-39-x86_64-linux-gnu.so building 'bx.misc.bgzf' extension creating build/temp.linux-x86_64-3.9/lib/bx/misc creating build/temp.linux-x86_64-3.9/src/samtools x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.9 -c lib/bx/misc/bgzf.c -o build/temp.linux-x86_64-3.9/lib/bx/misc/bgzf.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.9 -c src/samtools/bgzf.c -o build/temp.linux-x86_64-3.9/src/samtools/bgzf.o src/samtools/bgzf.c: In function ‘cache_block’: src/samtools/bgzf.c:422:40: warning: comparison of integer expressions of different signedness: ‘khint_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 422 | if ((kh_size(h) + 1) * MAX_BLOCK_SIZE > fp->cache_size) { | ^ src/samtools/bgzf.c: In function ‘read_block’: src/samtools/bgzf.c:462:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 462 | if (count != sizeof(header)) { | ^~ src/samtools/bgzf.c: In function ‘bgzf_close’: src/samtools/bgzf.c:603:8: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 603 | int count, block_length = deflate_block(fp, 0); | ^~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/misc/bgzf.o build/temp.linux-x86_64-3.9/src/samtools/bgzf.o -lz -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/bgzf.cpython-39-x86_64-linux-gnu.so building 'bx.intervals.cluster' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c lib/bx/intervals/cluster.c -o build/temp.linux-x86_64-3.9/lib/bx/intervals/cluster.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/cluster.c -o build/temp.linux-x86_64-3.9/src/cluster.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/intervals/cluster.o build/temp.linux-x86_64-3.9/src/cluster.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/cluster.cpython-39-x86_64-linux-gnu.so building 'bx.pwm._position_weight_matrix' extension creating build/temp.linux-x86_64-3.9/lib/bx/pwm x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c lib/bx/pwm/_position_weight_matrix.c -o build/temp.linux-x86_64-3.9/lib/bx/pwm/_position_weight_matrix.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/pwm_utils.c -o build/temp.linux-x86_64-3.9/src/pwm_utils.o src/pwm_utils.c: In function ‘main’: src/pwm_utils.c:11:27: warning: implicit declaration of function ‘strlen’ [-Wimplicit-function-declaration] 11 | int string_size = strlen(argv[1]); | ^~~~~~ src/pwm_utils.c:11:27: warning: incompatible implicit declaration of built-in function ‘strlen’ src/pwm_utils.c:5:1: note: include ‘’ or provide a declaration of ‘strlen’ 4 | #include +++ |+#include 5 | src/pwm_utils.c:12:29: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 12 | if (strlen(argv[2]) != string_size) { | ^~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/pwm/_position_weight_matrix.o build/temp.linux-x86_64-3.9/src/pwm_utils.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/_position_weight_matrix.cpython-39-x86_64-linux-gnu.so building 'bx.motif._pwm' extension creating build/temp.linux-x86_64-3.9/lib/bx/motif x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/motif/_pwm.c -o build/temp.linux-x86_64-3.9/lib/bx/motif/_pwm.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/motif/_pwm.c:608: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/motif/_pwm.c:608: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/motif/_pwm.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/_pwm.cpython-39-x86_64-linux-gnu.so building 'bx.arrays.array_tree' extension creating build/temp.linux-x86_64-3.9/lib/bx/arrays x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/arrays/array_tree.c -o build/temp.linux-x86_64-3.9/lib/bx/arrays/array_tree.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/arrays/array_tree.c:610: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/arrays/array_tree.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/array_tree.cpython-39-x86_64-linux-gnu.so building 'bx.bbi.bpt_file' extension creating build/temp.linux-x86_64-3.9/lib/bx/bbi x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/bbi/bpt_file.c -o build/temp.linux-x86_64-3.9/lib/bx/bbi/bpt_file.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/bbi/bpt_file.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bpt_file.cpython-39-x86_64-linux-gnu.so building 'bx.bbi.cirtree_file' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/bbi/cirtree_file.c -o build/temp.linux-x86_64-3.9/lib/bx/bbi/cirtree_file.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/bbi/cirtree_file.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/cirtree_file.cpython-39-x86_64-linux-gnu.so building 'bx.bbi.bbi_file' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/bbi/bbi_file.c -o build/temp.linux-x86_64-3.9/lib/bx/bbi/bbi_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bbi_file.c:610: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/bbi/bbi_file.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bbi_file.cpython-39-x86_64-linux-gnu.so building 'bx.bbi.bigwig_file' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/bbi/bigwig_file.c -o build/temp.linux-x86_64-3.9/lib/bx/bbi/bigwig_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bigwig_file.c:610: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’: lib/bx/bbi/bigwig_file.c:3299:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 3299 | __pyx_t_11 = ((__pyx_v_s < __pyx_v_self->start) != 0); | ^ lib/bx/bbi/bigwig_file.c:3328:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 3328 | __pyx_t_11 = ((__pyx_v_e > __pyx_v_self->end) != 0); | ^ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_29ArrayAccumulatingBlockHandler_handle_interval_value’: lib/bx/bbi/bigwig_file.c:5252:76: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 5252 | for (__pyx_v_i = (__pyx_v_s - __pyx_v_self->__pyx_base.start); __pyx_v_i < __pyx_t_2; __pyx_v_i++) { | ^ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’: lib/bx/bbi/bigwig_file.c:3385:18: warning: ‘__pyx_v_val’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3385 | __pyx_t_2 = ((struct __pyx_vtabstruct_2bx_3bbi_11bigwig_file_BigWigBlockHandler *)__pyx_v_self->__pyx_base.__pyx_vtab)->handle_interval_value(__pyx_v_self, __pyx_v_s, __pyx_v_e, __pyx_v_val); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 75, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/bx/bbi/bigwig_file.c:3328:51: warning: ‘__pyx_v_e’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3328 | __pyx_t_11 = ((__pyx_v_e > __pyx_v_self->end) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ lib/bx/bbi/bigwig_file.c:3299:53: warning: ‘__pyx_v_s’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3299 | __pyx_t_11 = ((__pyx_v_s < __pyx_v_self->start) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/bbi/bigwig_file.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigwig_file.cpython-39-x86_64-linux-gnu.so building 'bx.bbi.bigbed_file' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/bbi/bigbed_file.c -o build/temp.linux-x86_64-3.9/lib/bx/bbi/bigbed_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bigbed_file.c:610: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/bbi/bigbed_file.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigbed_file.cpython-39-x86_64-linux-gnu.so building 'bx.align._epo' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/align/_epo.c -o build/temp.linux-x86_64-3.9/lib/bx/align/_epo.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/align/_epo.c:610: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ lib/bx/align/_epo.c: In function ‘__pyx_f_2bx_5align_4_epo_bed_union’: lib/bx/align/_epo.c:5417:237: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5numpy_uint64_t’ {aka ‘long unsigned int’} and ‘Py_ssize_t’ {aka ‘long int’} [-Wsign-compare] 5417 | __pyx_t_4 = (((*__Pyx_BufPtrStrided2d(__pyx_t_5numpy_uint64_t *, __pyx_pybuffernd_elements.rcbuffer->pybuffer.buf, __pyx_t_11, __pyx_pybuffernd_elements.diminfo[0].strides, __pyx_t_12, __pyx_pybuffernd_elements.diminfo[1].strides)) <= __pyx_v_cen) != 0); | ^~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/align/_epo.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/_epo.cpython-39-x86_64-linux-gnu.so building 'bx.arrays.bed' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/arrays/bed.c -o build/temp.linux-x86_64-3.9/lib/bx/arrays/bed.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/arrays/bed.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/bed.cpython-39-x86_64-linux-gnu.so building 'bx.arrays.wiggle' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/arrays/wiggle.c -o build/temp.linux-x86_64-3.9/lib/bx/arrays/wiggle.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/arrays/wiggle.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/wiggle.cpython-39-x86_64-linux-gnu.so building 'bx.align.sitemask._cpg' extension creating build/temp.linux-x86_64-3.9/lib/bx/align/sitemask x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/align/sitemask/_cpg.c -o build/temp.linux-x86_64-3.9/lib/bx/align/sitemask/_cpg.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/align/sitemask/find_cpg.c -o build/temp.linux-x86_64-3.9/lib/bx/align/sitemask/find_cpg.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/align/sitemask/_cpg.o build/temp.linux-x86_64-3.9/lib/bx/align/sitemask/find_cpg.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/_cpg.cpython-39-x86_64-linux-gnu.so building 'bx.intseq.ngramcount' extension creating build/temp.linux-x86_64-3.9/lib/bx/intseq x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c lib/bx/intseq/ngramcount.c -o build/temp.linux-x86_64-3.9/lib/bx/intseq/ngramcount.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/intseq/ngramcount.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intseq/ngramcount.cpython-39-x86_64-linux-gnu.so building 'bx.misc._seekbzip2' extension creating build/temp.linux-x86_64-3.9/src/bunzip x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.9 -c lib/bx/misc/_seekbzip2.c -o build/temp.linux-x86_64-3.9/lib/bx/misc/_seekbzip2.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.9 -c src/bunzip/micro-bunzip.c -o build/temp.linux-x86_64-3.9/src/bunzip/micro-bunzip.o src/bunzip/micro-bunzip.c: In function ‘get_bits’: src/bunzip/micro-bunzip.c:99:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘char’ [-Wsign-compare] 99 | while (bd->inbufBitCount dbufSize) return RETVAL_DATA_ERROR; | ^ src/bunzip/micro-bunzip.c:298:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 298 | while (bd->inbufBitCountmaxLen) { | ^ src/bunzip/micro-bunzip.c:400:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 400 | if(origPtr>=dbufCount) return RETVAL_DATA_ERROR; | ^~ src/bunzip/micro-bunzip.c: In function ‘start_bunzip’: src/bunzip/micro-bunzip.c:629:12: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] 629 | bd->inbuf=inbuf; | ^ src/bunzip/micro-bunzip.c: In function ‘get_next_block’: src/bunzip/micro-bunzip.c:129:51: warning: ‘limit’ may be used uninitialized in this function [-Wmaybe-uninitialized] 129 | int dbufCount,nextSym,dbufSize,groupCount,*base,*limit,selector, | ^~~~~ src/bunzip/micro-bunzip.c:129:45: warning: ‘base’ may be used uninitialized in this function [-Wmaybe-uninitialized] 129 | int dbufCount,nextSym,dbufSize,groupCount,*base,*limit,selector, | ^~~~ src/bunzip/micro-bunzip.c:128:21: warning: ‘hufGroup’ may be used uninitialized in this function [-Wmaybe-uninitialized] 128 | struct group_data *hufGroup; | ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-o1IuMb/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lib/bx/misc/_seekbzip2.o build/temp.linux-x86_64-3.9/src/bunzip/micro-bunzip.o -o /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/_seekbzip2.cpython-39-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting scripts/maf_to_fasta.py -> build/scripts-3.9 copying and adjusting scripts/maf_chunk.py -> build/scripts-3.9 copying and adjusting scripts/axt_to_fasta.py -> build/scripts-3.9 copying and adjusting scripts/maf_extract_ranges_indexed.py -> build/scripts-3.9 copying and adjusting scripts/maf_mapping_word_frequency.py -> build/scripts-3.9 copying and adjusting scripts/maf_filter_max_wc.py -> build/scripts-3.9 copying and adjusting scripts/int_seqs_to_char_strings.py -> build/scripts-3.9 copying and adjusting scripts/interval_count_intersections.py -> build/scripts-3.9 copying and adjusting scripts/maf_tile.py -> build/scripts-3.9 copying and adjusting scripts/axt_to_lav.py -> build/scripts-3.9 copying and adjusting scripts/interval_join.py -> build/scripts-3.9 copying and adjusting scripts/lav_to_maf.py -> build/scripts-3.9 copying and adjusting scripts/maf_build_index.py -> build/scripts-3.9 copying and adjusting scripts/mMK_bitset.py -> build/scripts-3.9 copying and adjusting scripts/maf_div_sites.py -> build/scripts-3.9 copying and adjusting scripts/wiggle_to_simple.py -> build/scripts-3.9 copying and adjusting scripts/maf_mean_length_ungapped_piece.py -> build/scripts-3.9 copying and adjusting scripts/maf_covered_ranges.py -> build/scripts-3.9 copying and adjusting scripts/maf_chop.py -> build/scripts-3.9 copying and adjusting scripts/bed_count_overlapping.py -> build/scripts-3.9 copying and adjusting scripts/maf_thread_for_species.py -> build/scripts-3.9 copying and adjusting scripts/maf_randomize.py -> build/scripts-3.9 copying and adjusting scripts/pretty_table.py -> build/scripts-3.9 copying and adjusting scripts/axt_extract_ranges.py -> build/scripts-3.9 copying and adjusting scripts/maf_extract_chrom_ranges.py -> build/scripts-3.9 copying and adjusting scripts/nib_length.py -> build/scripts-3.9 copying and adjusting scripts/one_field_per_line.py -> build/scripts-3.9 copying and adjusting scripts/axt_to_maf.py -> build/scripts-3.9 copying and adjusting scripts/div_snp_table_chr.py -> build/scripts-3.9 copying and adjusting scripts/nib_chrom_intervals_to_fasta.py -> build/scripts-3.9 copying and adjusting scripts/table_add_column.py -> build/scripts-3.9 copying and adjusting scripts/lzop_build_offset_table.py -> build/scripts-3.9 copying and adjusting scripts/table_filter.py -> build/scripts-3.9 copying and adjusting scripts/ucsc_gene_table_to_intervals.py -> build/scripts-3.9 copying and adjusting scripts/maf_tile_2.py -> build/scripts-3.9 copying and adjusting scripts/bed_rand_intersect.py -> build/scripts-3.9 copying and adjusting scripts/maf_filter.py -> build/scripts-3.9 copying and adjusting scripts/maf_tile_2bit.py -> build/scripts-3.9 copying and adjusting scripts/maf_print_scores.py -> build/scripts-3.9 copying and adjusting scripts/maf_region_coverage_by_src.py -> build/scripts-3.9 copying and adjusting scripts/bed_build_windows.py -> build/scripts-3.9 copying and adjusting scripts/maf_covered_regions.py -> build/scripts-3.9 copying and adjusting scripts/lav_to_axt.py -> build/scripts-3.9 copying and adjusting scripts/qv_to_bqv.py -> build/scripts-3.9 copying and adjusting scripts/line_select.py -> build/scripts-3.9 copying and adjusting scripts/bed_intersect_basewise.py -> build/scripts-3.9 copying and adjusting scripts/bnMapper.py -> build/scripts-3.9 copying and adjusting scripts/maf_interval_alignibility.py -> build/scripts-3.9 copying and adjusting scripts/maf_count.py -> build/scripts-3.9 copying and adjusting scripts/maf_percent_columns_matching.py -> build/scripts-3.9 copying and adjusting scripts/prefix_lines.py -> build/scripts-3.9 copying and adjusting scripts/wiggle_to_chr_binned_array.py -> build/scripts-3.9 copying and adjusting scripts/get_scores_in_intervals.py -> build/scripts-3.9 copying and adjusting scripts/maf_drop_overlapping.py -> build/scripts-3.9 copying and adjusting scripts/wiggle_to_array_tree.py -> build/scripts-3.9 copying and adjusting scripts/maf_percent_identity.py -> build/scripts-3.9 copying and adjusting scripts/maf_translate_chars.py -> build/scripts-3.9 copying and adjusting scripts/mask_quality.py -> build/scripts-3.9 copying and adjusting scripts/out_to_chain.py -> build/scripts-3.9 copying and adjusting scripts/maf_shuffle_columns.py -> build/scripts-3.9 copying and adjusting scripts/bed_coverage_by_interval.py -> build/scripts-3.9 copying and adjusting scripts/maf_col_counts_all.py -> build/scripts-3.9 copying and adjusting scripts/bed_coverage.py -> build/scripts-3.9 copying and adjusting scripts/bed_extend_to.py -> build/scripts-3.9 copying and adjusting scripts/maf_extract_ranges.py -> build/scripts-3.9 copying and adjusting scripts/maf_mask_cpg.py -> build/scripts-3.9 copying and adjusting scripts/bed_merge_overlapping.py -> build/scripts-3.9 copying and adjusting scripts/maf_gap_frequency.py -> build/scripts-3.9 copying and adjusting scripts/gene_fourfold_sites.py -> build/scripts-3.9 copying and adjusting scripts/maf_print_chroms.py -> build/scripts-3.9 copying and adjusting scripts/maf_truncate.py -> build/scripts-3.9 copying and adjusting scripts/nib_intervals_to_fasta.py -> build/scripts-3.9 copying and adjusting scripts/maf_to_concat_fasta.py -> build/scripts-3.9 copying and adjusting scripts/bed_count_by_interval.py -> build/scripts-3.9 copying and adjusting scripts/random_lines.py -> build/scripts-3.9 copying and adjusting scripts/maf_to_axt.py -> build/scripts-3.9 copying and adjusting scripts/find_in_sorted_file.py -> build/scripts-3.9 copying and adjusting scripts/bed_diff_basewise_summary.py -> build/scripts-3.9 copying and adjusting scripts/bed_intersect.py -> build/scripts-3.9 copying and adjusting scripts/maf_gc_content.py -> build/scripts-3.9 copying and adjusting scripts/wiggle_to_binned_array.py -> build/scripts-3.9 copying and adjusting scripts/maf_select.py -> build/scripts-3.9 copying and adjusting scripts/bed_bigwig_profile.py -> build/scripts-3.9 copying and adjusting scripts/maf_split_by_src.py -> build/scripts-3.9 copying and adjusting scripts/bed_complement.py -> build/scripts-3.9 copying and adjusting scripts/align_print_template.py -> build/scripts-3.9 copying and adjusting scripts/maf_to_int_seqs.py -> build/scripts-3.9 copying and adjusting scripts/tfloc_summary.py -> build/scripts-3.9 copying and adjusting scripts/bed_subtract_basewise.py -> build/scripts-3.9 copying and adjusting scripts/maf_limit_to_species.py -> build/scripts-3.9 copying and adjusting scripts/maf_word_frequency.py -> build/scripts-3.9 copying and adjusting scripts/maf_species_in_all_files.py -> build/scripts-3.9 copying and adjusting scripts/aggregate_scores_in_intervals.py -> build/scripts-3.9 copying and adjusting scripts/maf_col_counts.py -> build/scripts-3.9 changing mode of build/scripts-3.9/maf_to_fasta.py from 644 to 755 changing mode of build/scripts-3.9/maf_chunk.py from 644 to 755 changing mode of build/scripts-3.9/axt_to_fasta.py from 644 to 755 changing mode of build/scripts-3.9/maf_extract_ranges_indexed.py from 644 to 755 changing mode of build/scripts-3.9/maf_mapping_word_frequency.py from 644 to 755 changing mode of build/scripts-3.9/maf_filter_max_wc.py from 644 to 755 changing mode of build/scripts-3.9/int_seqs_to_char_strings.py from 644 to 755 changing mode of build/scripts-3.9/interval_count_intersections.py from 644 to 755 changing mode of build/scripts-3.9/maf_tile.py from 644 to 755 changing mode of build/scripts-3.9/axt_to_lav.py from 644 to 755 changing mode of build/scripts-3.9/interval_join.py from 644 to 755 changing mode of build/scripts-3.9/lav_to_maf.py from 644 to 755 changing mode of build/scripts-3.9/maf_build_index.py from 644 to 755 changing mode of build/scripts-3.9/mMK_bitset.py from 644 to 755 changing mode of build/scripts-3.9/maf_div_sites.py from 644 to 755 changing mode of build/scripts-3.9/wiggle_to_simple.py from 644 to 755 changing mode of build/scripts-3.9/maf_mean_length_ungapped_piece.py from 644 to 755 changing mode of build/scripts-3.9/maf_covered_ranges.py from 644 to 755 changing mode of build/scripts-3.9/maf_chop.py from 644 to 755 changing mode of build/scripts-3.9/bed_count_overlapping.py from 644 to 755 changing mode of build/scripts-3.9/maf_thread_for_species.py from 644 to 755 changing mode of build/scripts-3.9/maf_randomize.py from 644 to 755 changing mode of build/scripts-3.9/pretty_table.py from 644 to 755 changing mode of build/scripts-3.9/axt_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.9/maf_extract_chrom_ranges.py from 644 to 755 changing mode of build/scripts-3.9/nib_length.py from 644 to 755 changing mode of build/scripts-3.9/one_field_per_line.py from 644 to 755 changing mode of build/scripts-3.9/axt_to_maf.py from 644 to 755 changing mode of build/scripts-3.9/div_snp_table_chr.py from 644 to 755 changing mode of build/scripts-3.9/nib_chrom_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.9/table_add_column.py from 644 to 755 changing mode of build/scripts-3.9/lzop_build_offset_table.py from 644 to 755 changing mode of build/scripts-3.9/table_filter.py from 644 to 755 changing mode of build/scripts-3.9/ucsc_gene_table_to_intervals.py from 644 to 755 changing mode of build/scripts-3.9/maf_tile_2.py from 644 to 755 changing mode of build/scripts-3.9/bed_rand_intersect.py from 644 to 755 changing mode of build/scripts-3.9/maf_filter.py from 644 to 755 changing mode of build/scripts-3.9/maf_tile_2bit.py from 644 to 755 changing mode of build/scripts-3.9/maf_print_scores.py from 644 to 755 changing mode of build/scripts-3.9/maf_region_coverage_by_src.py from 644 to 755 changing mode of build/scripts-3.9/bed_build_windows.py from 644 to 755 changing mode of build/scripts-3.9/maf_covered_regions.py from 644 to 755 changing mode of build/scripts-3.9/lav_to_axt.py from 644 to 755 changing mode of build/scripts-3.9/qv_to_bqv.py from 644 to 755 changing mode of build/scripts-3.9/line_select.py from 644 to 755 changing mode of build/scripts-3.9/bed_intersect_basewise.py from 644 to 755 changing mode of build/scripts-3.9/bnMapper.py from 644 to 755 changing mode of build/scripts-3.9/maf_interval_alignibility.py from 644 to 755 changing mode of build/scripts-3.9/maf_count.py from 644 to 755 changing mode of build/scripts-3.9/maf_percent_columns_matching.py from 644 to 755 changing mode of build/scripts-3.9/prefix_lines.py from 644 to 755 changing mode of build/scripts-3.9/wiggle_to_chr_binned_array.py from 644 to 755 changing mode of build/scripts-3.9/get_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.9/maf_drop_overlapping.py from 644 to 755 changing mode of build/scripts-3.9/wiggle_to_array_tree.py from 644 to 755 changing mode of build/scripts-3.9/maf_percent_identity.py from 644 to 755 changing mode of build/scripts-3.9/maf_translate_chars.py from 644 to 755 changing mode of build/scripts-3.9/mask_quality.py from 644 to 755 changing mode of build/scripts-3.9/out_to_chain.py from 644 to 755 changing mode of build/scripts-3.9/maf_shuffle_columns.py from 644 to 755 changing mode of build/scripts-3.9/bed_coverage_by_interval.py from 644 to 755 changing mode of build/scripts-3.9/maf_col_counts_all.py from 644 to 755 changing mode of build/scripts-3.9/bed_coverage.py from 644 to 755 changing mode of build/scripts-3.9/bed_extend_to.py from 644 to 755 changing mode of build/scripts-3.9/maf_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.9/maf_mask_cpg.py from 644 to 755 changing mode of build/scripts-3.9/bed_merge_overlapping.py from 644 to 755 changing mode of build/scripts-3.9/maf_gap_frequency.py from 644 to 755 changing mode of build/scripts-3.9/gene_fourfold_sites.py from 644 to 755 changing mode of build/scripts-3.9/maf_print_chroms.py from 644 to 755 changing mode of build/scripts-3.9/maf_truncate.py from 644 to 755 changing mode of build/scripts-3.9/nib_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.9/maf_to_concat_fasta.py from 644 to 755 changing mode of build/scripts-3.9/bed_count_by_interval.py from 644 to 755 changing mode of build/scripts-3.9/random_lines.py from 644 to 755 changing mode of build/scripts-3.9/maf_to_axt.py from 644 to 755 changing mode of build/scripts-3.9/find_in_sorted_file.py from 644 to 755 changing mode of build/scripts-3.9/bed_diff_basewise_summary.py from 644 to 755 changing mode of build/scripts-3.9/bed_intersect.py from 644 to 755 changing mode of build/scripts-3.9/maf_gc_content.py from 644 to 755 changing mode of build/scripts-3.9/wiggle_to_binned_array.py from 644 to 755 changing mode of build/scripts-3.9/maf_select.py from 644 to 755 changing mode of build/scripts-3.9/bed_bigwig_profile.py from 644 to 755 changing mode of build/scripts-3.9/maf_split_by_src.py from 644 to 755 changing mode of build/scripts-3.9/bed_complement.py from 644 to 755 changing mode of build/scripts-3.9/align_print_template.py from 644 to 755 changing mode of build/scripts-3.9/maf_to_int_seqs.py from 644 to 755 changing mode of build/scripts-3.9/tfloc_summary.py from 644 to 755 changing mode of build/scripts-3.9/bed_subtract_basewise.py from 644 to 755 changing mode of build/scripts-3.9/maf_limit_to_species.py from 644 to 755 changing mode of build/scripts-3.9/maf_word_frequency.py from 644 to 755 changing mode of build/scripts-3.9/maf_species_in_all_files.py from 644 to 755 changing mode of build/scripts-3.9/aggregate_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.9/maf_col_counts.py from 644 to 755 dh_auto_test -a -O--buildsystem=pybuild I: pybuild pybuild:284: cp -r /build/python-bx-o1IuMb/python-bx-0.8.9/test_data /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/ I: pybuild base:232: cd /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build; python3.9 -m nose -v nose.config: INFO: Ignoring files matching ['^\\.', '^_', '^setup\\.py$'] nose.selector: INFO: /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/array_tree.cpython-39-x86_64-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/bed.cpython-39-x86_64-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/wiggle.cpython-39-x86_64-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bbi_file.cpython-39-x86_64-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigbed_file.cpython-39-x86_64-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigwig_file.cpython-39-x86_64-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bpt_file.cpython-39-x86_64-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/cirtree_file.cpython-39-x86_64-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bitset.cpython-39-x86_64-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/cluster.cpython-39-x86_64-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/intersection.cpython-39-x86_64-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intseq/ngramcount.cpython-39-x86_64-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/bgzf.cpython-39-x86_64-linux-gnu.so is executable; skipped bx.align.sitemask.sitemask_tests.test_cpg_inclusive ... ok bx.align.sitemask.sitemask_tests.test_cpg_restricted ... ok bx.align.sitemask.sitemask_tests.test_non_cpg ... ok test_ci (bx.align.epo_tests.TestBed) ... ok test_elem_u (bx.align.epo_tests.TestBed) ... ok test_make_chain (bx.align.epo_tests.TestEpo) ... ok test_out (bx.align.epo_tests.TestEpo) ... ok test_rem_dash (bx.align.epo_tests.TestEpo) ... ok testReader (bx.align.lav_tests.lavTestCase) ... ok bx.align.maf_tests.test_reader ... ok bx.align.maf_tests.test_writer ... ok bx.align.maf_tests.test_slice ... ok bx.align.maf_tests.test_with_synteny ... ok bx.align.maf_tests.test_write_with_synteny ... ok test_accumulate (bx.align.score_tests.BasicTests) ... ok test_align (bx.align.score_tests.BasicTests) ... ok test_asymm_scoring (bx.align.score_tests.BasicTests) ... ok test_nonsymm_scoring (bx.align.score_tests.BasicTests) ... ok test_scoring_text (bx.align.score_tests.BasicTests) ... ok test_big (bx.arrays.array_tree_tests.TestArrayTree) ... ok test_get_frequencies (bx.arrays.array_tree_tests.TestArrayTree) ... ok test_get_leaf (bx.arrays.array_tree_tests.TestArrayTree) ... ok test_get_summary (bx.arrays.array_tree_tests.TestArrayTree) ... ok test_higher_level_than_tree (bx.arrays.array_tree_tests.TestArrayTree) ... ok test_wrong_dictkey (bx.arrays.array_tree_tests.TestArrayTree) ... ok test_get_leaf (bx.bbi.bigwig_tests.TestBigWig) ... ok test_get_summary (bx.bbi.bigwig_tests.TestBigWig) ... ok test_wrong_nochrom (bx.bbi.bigwig_tests.TestBigWig) ... ok Test summaries line 0: chr1 10000 20000 10 mean -0.175576 -0.05 ... ok Test summaries line 1: chr1 10000 20000 10 min -2.525 -3.84387 ... ok Test summaries line 2: chr1 10000 20000 10 max 0.0508425 0.289 ... ok Test summaries line 3: chr1 10000 20000 10 std 0.700141 0.52916 ... ok Test summaries line 4: chr1 10000 12000 10 mean n/a n/a n/a n/a ... /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigwig_tests.py:80: RuntimeWarning: invalid value encountered in true_divide print(sd.sum_data / sd.valid_count) /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigwig_tests.py:82: RuntimeWarning: invalid value encountered in true_divide assert allclose(sd.sum_data / sd.valid_count, values) ok Test summaries line 5: chr1 10000 12000 10 min n/a n/a n/a n/a ... ok Test summaries line 6: chr1 10000 12000 10 max n/a n/a n/a n/a ... ok Test summaries line 7: chr1 10000 12000 10 std n/a n/a n/a n/a ... ok Test summaries line 8: chr1 10000 20000 100 mean n/a n/a n/a n/ ... ok Test summaries line 9: chr1 10000 20000 100 min n/a n/a n/a n/a ... ok Test summaries line 10: chr1 10000 20000 100 max n/a n/a n/a n/a ... ok Test summaries line 11: chr1 10000 20000 100 std n/a n/a n/a n/a ... ok Test summaries line 12: chr1 10000 12000 100 mean n/a n/a n/a n/ ... ok Test summaries line 13: chr1 10000 12000 100 min n/a n/a n/a n/a ... ok Test summaries line 14: chr1 10000 12000 100 max n/a n/a n/a n/a ... ok Test summaries line 15: chr1 10000 12000 100 std n/a n/a n/a n/a ... ok Test summaries line 16: chr1 10000 20000 1000 mean n/a n/a n/a n ... ok Test summaries line 17: chr1 10000 20000 1000 min n/a n/a n/a n/ ... ok Test summaries line 18: chr1 10000 20000 1000 max n/a n/a n/a n/ ... ok Test summaries line 19: chr1 10000 20000 1000 std n/a n/a n/a n/ ... ok Test summaries line 20: chr1 10000 12000 1000 mean n/a n/a n/a n ... ok Test summaries line 21: chr1 10000 12000 1000 min n/a n/a n/a n/ ... ok Test summaries line 22: chr1 10000 12000 1000 max n/a n/a n/a n/ ... ok Test summaries line 23: chr1 10000 12000 1000 std n/a n/a n/a n/ ... ok test_another (bx.intervals.cluster_tests.TestCluster) ... ok test_distance (bx.intervals.cluster_tests.TestCluster) ... ok test_duplicates (bx.intervals.cluster_tests.TestCluster) ... ok test_easymerge (bx.intervals.cluster_tests.TestCluster) ... ok test_hardmerge (bx.intervals.cluster_tests.TestCluster) ... ok test_large_sorted (bx.intervals.cluster_tests.TestCluster) ... ok test_larger (bx.intervals.cluster_tests.TestCluster) ... ok test_merge_case (bx.intervals.cluster_tests.TestCluster) ... ok test_merge_left_right (bx.intervals.cluster_tests.TestCluster) ... ok test_minregions (bx.intervals.cluster_tests.TestCluster) ... ok test_none (bx.intervals.cluster_tests.TestCluster) ... ok test_startbeforeend (bx.intervals.cluster_tests.TestCluster) ... ok test_trivial (bx.intervals.cluster_tests.TestCluster) ... ok test_empty (bx.intervals.intersection_tests.IntervalTreeTest) ... ok test_find (bx.intervals.intersection_tests.IntervalTreeTest) ... ok test_public_interval (bx.intervals.intersection_tests.IntervalTreeTest) ... ok test_traverse (bx.intervals.intersection_tests.IntervalTreeTest) ... ok test_count (bx.intervals.intersection_tests.LotsaTestCase) ... ok test_find (bx.intervals.intersection_tests.LotsaTestCase) ... ok test_max_dist (bx.intervals.intersection_tests.LotsaTestCase) ... ok test_left (bx.intervals.intersection_tests.NeighborTestCase) ... ok test_right (bx.intervals.intersection_tests.NeighborTestCase) ... ok test_toomany (bx.intervals.intersection_tests.NeighborTestCase) ... ok test_downstream (bx.intervals.intersection_tests.UpDownStreamTestCase) ... ok test_n (bx.intervals.intersection_tests.UpDownStreamTestCase) ... ok test_upstream (bx.intervals.intersection_tests.UpDownStreamTestCase) ... ok bx.misc.bgzf_tests.test_bgzf ... ok bx.misc.cdb_tests.test ... ok bx.motif.io.transfac_tests.test_reader ... ok bx.motif.pwm_tests.test_create ... ok bx.motif.pwm_tests.test_scoring ... ok bx.motif.pwm_tests.test_scoring_with_gaps ... ok check tree parsing 0 ... ok check tree parsing 1 ... ok check tree parsing 2 ... ok check tree parsing 3 ... ok check tree parsing 4 ... ok check tree parsing 5 ... ok check tree parsing 6 ... ok check tree parsing 7 ... ok bx.phylo.phast_tests.test_parser ... ok testReader (bx.pwm.pwm_tests.PWMTestCase) ... ok test_get (bx.seq.fasta_tests.FASTATestCase) ... ok test_get (bx.seq.nib_tests.NIBTestCase) ... ok test_get (bx.seq.qdna_tests.QDNATestCase) ... ok test_get_fasta (bx.seq.seq_tests.SEQTestCase) ... ok test_get_nib (bx.seq.seq_tests.SEQTestCase) ... ok test_get_qdna (bx.seq.seq_tests.SEQTestCase) ... ok test_get_reader (bx.seq.seq_tests.SEQTestCase) ... ok Nose test generator ... ok Nose test generator ... ok Nose test generator ... ok bx.binned_array_tests.test_simple ... ok bx.binned_array_tests.test_file ... ok bx.binned_array_tests.test_file_lzo ... ok bx.binned_array_tests.test_binned_array_writer ... ok test_access (bx.bitset_tests.BinnedBitSetTests) ... ok test_and (bx.bitset_tests.BinnedBitSetTests) ... ok test_count (bx.bitset_tests.BinnedBitSetTests) ... ok test_find (bx.bitset_tests.BinnedBitSetTests) ... ok test_not (bx.bitset_tests.BinnedBitSetTests) ... ok test_or (bx.bitset_tests.BinnedBitSetTests) ... ok test_overflow_access (bx.bitset_tests.BinnedBitSetTests) ... ok test_overflow_create (bx.bitset_tests.BinnedBitSetTests) ... ok test_range_access (bx.bitset_tests.BinnedBitSetTests) ... ok test_access (bx.bitset_tests.BitSetTests) ... ok test_and (bx.bitset_tests.BitSetTests) ... ok test_count (bx.bitset_tests.BitSetTests) ... ok test_find (bx.bitset_tests.BitSetTests) ... ok test_not (bx.bitset_tests.BitSetTests) ... ok test_or (bx.bitset_tests.BitSetTests) ... ok test_overflow_access (bx.bitset_tests.BitSetTests) ... ok test_overflow_create (bx.bitset_tests.BitSetTests) ... ok test_range_access (bx.bitset_tests.BitSetTests) ... ok bx.interval_index_file_tests.test_offsets ... ok bx.interval_index_file_tests.test_interval_index_file ... ok bx.interval_index_file_tests.test_zero ... ok test_interval_reader (bx.wiggle_tests.TestWiggleReader) ... ok test_reader (bx.wiggle_tests.TestWiggleReader) ... ok bx_extras.fpconst_tests.test_all ... ok nose.selector: INFO: /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bbi_tests/make_expectation.sh is executable; skipped ---------------------------------------------------------------------- Ran 132 tests in 24.944s OK create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx running install running build running build_py running build_ext skipping 'lib/bx/bitset.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/intersection.c' Cython extension (up-to-date) skipping 'lib/bx/align/_core.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_nib.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_twobit.c' Cython extension (up-to-date) skipping 'lib/bx/_seqmapping.c' Cython extension (up-to-date) skipping 'lib/bx/misc/bgzf.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/cluster.c' Cython extension (up-to-date) skipping 'lib/bx/pwm/_position_weight_matrix.c' Cython extension (up-to-date) skipping 'lib/bx/motif/_pwm.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/array_tree.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bpt_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/cirtree_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bbi_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigwig_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigbed_file.c' Cython extension (up-to-date) skipping 'lib/bx/align/_epo.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/bed.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/wiggle.c' Cython extension (up-to-date) skipping 'lib/bx/align/sitemask/_cpg.c' Cython extension (up-to-date) skipping 'lib/bx/intseq/ngramcount.c' Cython extension (up-to-date) skipping 'lib/bx/misc/_seekbzip2.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9 creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/newick_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/phast_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/phast.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/__pycache__/newick.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/__pycache__/newick_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/__pycache__/phast.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/__pycache__/phast_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/newick.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/gene_reader.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/_seqmapping.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/tabular copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/tabular/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/tabular copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/tabular/io.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/tabular creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/tabular/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/tabular/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/tabular/__pycache__ creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/_seekbzip2.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/bgzf.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/filecache_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/bgzf_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/seeklzop.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/readlengths.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/seekbzip2_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/seeklzop_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/seekbzip2.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/readlengths.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/bgzf_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/cdb_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/filecache.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/seeklzop.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/filecache_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/seekbzip2.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/cdb.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/seekbzip2_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/seeklzop_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/binary_file.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/cdb_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/cdb.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/binary_file.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/filecache.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/binned_array_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigwig_file.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigwig_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bbi_file.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/__pycache__/bigwig_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bpt_file.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/cirtree_file.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigbed_file.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bitset_utils.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/wiggle.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/cluster.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/intersection_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/intersection.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/concat.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/quicksect.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/intersect.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/subtract.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/merge.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/join.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/base_coverage.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/coverage.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/find_clusters.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/complement.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/io.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/cluster_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/__pycache__/intersection_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/__pycache__/cluster_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/random_intervals.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/filter.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/seq_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/seq.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/twobit_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/fasta_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/_nib.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/core.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/qdna.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/nib_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/fasta.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/qdna_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/twobit.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/_twobit.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/nib.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/fasta_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/fasta.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/qdna_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/core.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/nib_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/twobit.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/twobit_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/seq_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/qdna.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/seq.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/nib.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/interval_index_file_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seqmapping.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/interval_index_file.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intseq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intseq/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intseq copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intseq/ngramcount.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intseq creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intseq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intseq/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intseq/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bitset.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bitset_builders.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/binned_array.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/epo_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/score.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/_epo.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/lav.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/epo.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/core.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/quality.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/core.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/_cpg.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/cpg.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/sitemask_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/__pycache__/cpg.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/__pycache__/core.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/__pycache__/sitemask_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/score_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/lav_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/fuse.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/__pycache__/thread.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/__pycache__/fuse.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/__pycache__/chop.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/__pycache__/tile.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/tile.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/chop.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/thread.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/_core.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/axt.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/maf_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/score.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/score_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/maf.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/epo.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/epo_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/core.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/maf_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/lav.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/lav_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/maf.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/maf_select_motifs.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/bed_score_aligned_pwm.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/pwm_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/pwm_score_positions.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/pwm_score_motifs.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/_position_weight_matrix.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/pwm_score_maf.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/bed_score_aligned_string.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/__pycache__/pwm_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/__pycache__/position_weight_matrix.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/position_weight_matrix.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/wiggle_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/wiggle_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/filter.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/wiggle.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/seqmapping_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/bitset_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/binned_array.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/seqmapping.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/interval_index_file_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/binned_array_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/interval_index_file.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/wiggle.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/array_tree_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/array_tree.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/bed.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/__pycache__/array_tree_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays/__pycache__ creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/pwm_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io/transfac_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io/__pycache__/transfac.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io/__pycache__/transfac_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io/transfac.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/pwm.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/logo copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/logo/template.ps -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/logo copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/logo/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/logo creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/logo/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/logo/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/logo/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/_pwm.cpython-39-x86_64-linux-gnu.so -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/__pycache__/pwm_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/__pycache__/pwm.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seqmapping_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook/argparse.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook/progress_bar.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook/doc_optparse.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook/attribute.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bitset_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bgzf_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bgzf_tests/test.txt -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bgzf_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bgzf_tests/test.txt.gz -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bgzf_tests creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/lav_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/lav_tests/orange.fa -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/lav_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/lav_tests/orange.nib -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/lav_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/lav_tests/apple_orange.lav -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/lav_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/lav_tests/apple.fa -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/lav_tests creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hg19.chrom.sizes -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.out -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hg19_one_peak.bed -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hpeaks.mapped.nopeak2.bed4 -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hg19.mm9.rBest.chain.gz -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.chain -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hpeaks.mapped.bed4 -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hpeaks.bed -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/mm9.chrom.sizes -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hpeaks.mapped.bed12 -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hg19_one_peak.mapped.bed -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/maf_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/maf_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/maf_tests/dcking_ghp074.maf -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/maf_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/maf_tests/dcking_ghp074.bed -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/maf_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf.index -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/maf_tests creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bbi_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bbi_tests/test.wig -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bbi_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bbi_tests/test.bw -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bbi_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bbi_tests/test.regions -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bbi_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bbi_tests/test.expectation -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bbi_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bbi_tests/make_expectation.sh -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bbi_tests creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/testMask.2bit -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/test.qdna -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/test.nib -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/testN.fa -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/testMask.fa -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/testN.2bit -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/test2.fa -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/test.2bit -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/test.fa -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/pstat.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/pyparsing.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/__init__.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/lrucache.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/stats.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/fpconst.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/__pycache__/lrucache.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/__pycache__/fpconst_tests.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/__pycache__/pyparsing.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/__pycache__/fpconst.cpython-39.pyc -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/__pycache__ copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/fpconst_tests.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras copying /build/python-bx-o1IuMb/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/psyco_full.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/newick_tests.py to newick_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/phast_tests.py to phast_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/phast.py to phast.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/newick.py to newick.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/gene_reader.py to gene_reader.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/tabular/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/tabular/io.py to io.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/filecache_tests.py to filecache_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/bgzf_tests.py to bgzf_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/seeklzop.py to seeklzop.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/readlengths.py to readlengths.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/seekbzip2_tests.py to seekbzip2_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/seeklzop_tests.py to seeklzop_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/seekbzip2.py to seekbzip2.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/cdb_tests.py to cdb_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/cdb.py to cdb.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/binary_file.py to binary_file.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/filecache.py to filecache.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/binned_array_tests.py to binned_array_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi/bigwig_tests.py to bigwig_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bitset_utils.py to bitset_utils.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/wiggle.py to wiggle.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/intersection_tests.py to intersection_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/concat.py to concat.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/quicksect.py to quicksect.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/intersect.py to intersect.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/subtract.py to subtract.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/merge.py to merge.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/join.py to join.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/base_coverage.py to base_coverage.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/coverage.py to coverage.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/find_clusters.py to find_clusters.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/complement.py to complement.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/io.py to io.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/cluster_tests.py to cluster_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/random_intervals.py to random_intervals.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/filter.py to filter.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/seq_tests.py to seq_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/seq.py to seq.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/twobit_tests.py to twobit_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/fasta_tests.py to fasta_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/core.py to core.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/qdna.py to qdna.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/nib_tests.py to nib_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/fasta.py to fasta.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/qdna_tests.py to qdna_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/twobit.py to twobit.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/nib.py to nib.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/interval_index_file_tests.py to interval_index_file_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seqmapping.py to seqmapping.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/interval_index_file.py to interval_index_file.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intseq/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bitset_builders.py to bitset_builders.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/binned_array.py to binned_array.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/epo_tests.py to epo_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/score.py to score.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/lav.py to lav.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/epo.py to epo.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/core.py to core.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/quality.py to quality.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/core.py to core.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/cpg.py to cpg.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/sitemask_tests.py to sitemask_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/score_tests.py to score_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/lav_tests.py to lav_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/fuse.py to fuse.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/tile.py to tile.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/chop.py to chop.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/thread.py to thread.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/axt.py to axt.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/maf_tests.py to maf_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/maf.py to maf.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/maf_select_motifs.py to maf_select_motifs.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/bed_score_aligned_pwm.py to bed_score_aligned_pwm.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/pwm_tests.py to pwm_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/pwm_score_positions.py to pwm_score_positions.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/pwm_score_motifs.py to pwm_score_motifs.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/pwm_score_maf.py to pwm_score_maf.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/bed_score_aligned_string.py to bed_score_aligned_string.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/position_weight_matrix.py to position_weight_matrix.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/wiggle_tests.py to wiggle_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays/array_tree_tests.py to array_tree_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/pwm_tests.py to pwm_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io/transfac_tests.py to transfac_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io/transfac.py to transfac.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/pwm.py to pwm.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/logo/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seqmapping_tests.py to seqmapping_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook/argparse.py to argparse.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook/progress_bar.py to progress_bar.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook/doc_optparse.py to doc_optparse.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook/attribute.py to attribute.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bitset_tests.py to bitset_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/pstat.py to pstat.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/pyparsing.py to pyparsing.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/lrucache.py to lrucache.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/stats.py to stats.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/fpconst.py to fpconst.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/fpconst_tests.py to fpconst_tests.cpython-39.pyc byte-compiling /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/psyco_full.py to psyco_full.cpython-39.pyc running install_egg_info running egg_info creating lib/bx_python.egg-info writing lib/bx_python.egg-info/PKG-INFO writing dependency_links to lib/bx_python.egg-info/dependency_links.txt writing requirements to lib/bx_python.egg-info/requires.txt writing top-level names to lib/bx_python.egg-info/top_level.txt writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'distribute_setup.py' writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' Copying lib/bx_python.egg-info to /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_python-0.8.9.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_to_fasta.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_chunk.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/axt_to_fasta.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_extract_ranges_indexed.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_mapping_word_frequency.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_filter_max_wc.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/int_seqs_to_char_strings.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/interval_count_intersections.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_tile.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/axt_to_lav.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/interval_join.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/lav_to_maf.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_build_index.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/mMK_bitset.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_div_sites.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/wiggle_to_simple.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_mean_length_ungapped_piece.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_covered_ranges.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_chop.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_count_overlapping.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_thread_for_species.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_randomize.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/pretty_table.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/axt_extract_ranges.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_extract_chrom_ranges.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/nib_length.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/one_field_per_line.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/axt_to_maf.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/div_snp_table_chr.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/nib_chrom_intervals_to_fasta.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/table_add_column.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/lzop_build_offset_table.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/table_filter.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/ucsc_gene_table_to_intervals.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_tile_2.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_rand_intersect.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_filter.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_tile_2bit.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_print_scores.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_region_coverage_by_src.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_build_windows.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_covered_regions.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/lav_to_axt.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/qv_to_bqv.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/line_select.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_intersect_basewise.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bnMapper.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_interval_alignibility.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_count.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_percent_columns_matching.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/prefix_lines.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/wiggle_to_chr_binned_array.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/get_scores_in_intervals.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_drop_overlapping.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/wiggle_to_array_tree.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_percent_identity.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_translate_chars.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/mask_quality.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/out_to_chain.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_shuffle_columns.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_coverage_by_interval.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_col_counts_all.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_coverage.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_extend_to.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_extract_ranges.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_mask_cpg.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_merge_overlapping.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_gap_frequency.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/gene_fourfold_sites.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_print_chroms.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_truncate.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/nib_intervals_to_fasta.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_to_concat_fasta.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_count_by_interval.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/random_lines.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_to_axt.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/find_in_sorted_file.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_diff_basewise_summary.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_intersect.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_gc_content.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/wiggle_to_binned_array.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_select.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_bigwig_profile.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_split_by_src.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_complement.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/align_print_template.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_to_int_seqs.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/tfloc_summary.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_subtract_basewise.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_limit_to_species.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_word_frequency.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_species_in_all_files.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/aggregate_scores_in_intervals.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_col_counts.py -> /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_to_fasta.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_chunk.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/axt_to_fasta.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_extract_ranges_indexed.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_mapping_word_frequency.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_filter_max_wc.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/int_seqs_to_char_strings.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/interval_count_intersections.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_tile.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/axt_to_lav.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/interval_join.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/lav_to_maf.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_build_index.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/mMK_bitset.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_div_sites.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/wiggle_to_simple.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_mean_length_ungapped_piece.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_covered_ranges.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_chop.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_count_overlapping.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_thread_for_species.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_randomize.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/pretty_table.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/axt_extract_ranges.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_extract_chrom_ranges.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/nib_length.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/one_field_per_line.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/axt_to_maf.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/div_snp_table_chr.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/nib_chrom_intervals_to_fasta.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/table_add_column.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/lzop_build_offset_table.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/table_filter.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/ucsc_gene_table_to_intervals.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_tile_2.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_rand_intersect.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_filter.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_tile_2bit.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_print_scores.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_region_coverage_by_src.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_build_windows.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_covered_regions.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/lav_to_axt.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/qv_to_bqv.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/line_select.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_intersect_basewise.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bnMapper.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_interval_alignibility.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_count.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_percent_columns_matching.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/prefix_lines.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/wiggle_to_chr_binned_array.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/get_scores_in_intervals.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_drop_overlapping.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/wiggle_to_array_tree.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_percent_identity.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_translate_chars.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/mask_quality.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/out_to_chain.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_shuffle_columns.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_coverage_by_interval.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_col_counts_all.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_coverage.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_extend_to.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_extract_ranges.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_mask_cpg.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_merge_overlapping.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_gap_frequency.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/gene_fourfold_sites.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_print_chroms.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_truncate.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/nib_intervals_to_fasta.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_to_concat_fasta.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_count_by_interval.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/random_lines.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_to_axt.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/find_in_sorted_file.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_diff_basewise_summary.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_intersect.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_gc_content.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/wiggle_to_binned_array.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_select.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_bigwig_profile.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_split_by_src.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_complement.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/align_print_template.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_to_int_seqs.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/tfloc_summary.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_subtract_basewise.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_limit_to_species.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_word_frequency.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_species_in_all_files.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/aggregate_scores_in_intervals.py to 755 changing mode of /build/python-bx-o1IuMb/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_col_counts.py to 755 dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -a -O--buildsystem=pybuild dh_strip -a -a -O--buildsystem=pybuild dh_makeshlibs -a -a -O--buildsystem=pybuild dh_shlibdeps -a -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-bx: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-bx: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-bx: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-bx: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'python3-bx-dbgsym' in '../python3-bx-dbgsym_0.8.9-1_amd64.deb'. dpkg-deb: building package 'python3-bx' in '../python3-bx_0.8.9-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../python-bx_0.8.9-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/python-bx-o1IuMb /tmp/python-bx-0.8.9-1zq2mibhx I: cleaning package lists and apt cache... W: deleting files in /tmp: foo W: deleting files in /tmp: foo4 W: deleting files in /tmp: foo3 W: deleting files in /tmp: tmp422kwjjw I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.ckLdfDUvWv... I: success in 545.8113 seconds md5: python3-bx-dbgsym_0.8.9-1_amd64.deb: OK md5: python3-bx_0.8.9-1_amd64.deb: OK sha1: python3-bx-dbgsym_0.8.9-1_amd64.deb: OK sha1: python3-bx_0.8.9-1_amd64.deb: OK sha256: python3-bx-dbgsym_0.8.9-1_amd64.deb: OK sha256: python3-bx_0.8.9-1_amd64.deb: OK Checksums: OK