Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/python-biopython/python-biopython_1.79+dfsg-1+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/python-biopython-1.79+dfsg-1+b16r86we3k/python-biopython_1.79+dfsg-1+b1_amd64.buildinfo Get source package info: python-biopython=1.79+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/python-biopython/1.79+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-5 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bwa=0.7.17-6+b1 bzip2=1.0.8-4 clustalo=1.2.4-7 clustalw=2.1+lgpl-7 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-12 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-python=5.20211114 dh-strip-nondeterminism=1.12.1-1 dialign=2.2.1-11 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dssp=4.0.0-2 dwz=0.14-1 emboss=6.6.0+dfsg-9 emboss-data=6.6.0+dfsg-9 emboss-lib=6.6.0+dfsg-9 fasttree=2.1.11-2 file=1:5.41-2 findutils=4.8.0-1 flex=2.6.4-8 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-lmodern=2.004.5-6.1 fonts-lyx=2.3.6-1 fonts-urw-base35=20200910-1 g++=4:11.2.0-2 g++-11=11.2.0-12 gcc=4:11.2.0-2 gcc-11=11.2.0-12 gcc-11-base=11.2.0-12 gettext=0.21-4 gettext-base=0.21-4 ghostscript=9.55.0~dfsg-3 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hevea=2.35-1 hostname=3.23 ibverbs-providers=38.0-1 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libargtable2-0=13-1.1 libasan6=11.2.0-12 libatomic1=11.2.0-12 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libbinutils=2.37-10 libblas3=3.10.0-1 libblkid1=2.37.2-4 libboost-iostreams1.74.0=1.74.0-13 libboost-program-options1.74.0=1.74.0-13 libbrotli1=1.0.9-2+b3 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.32-4 libc-dev-bin=2.32-4 libc6=2.32-4 libc6-dev=2.32-4 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcbor0.8=0.8.0-2 libcc1-0=11.2.0-12 libcifpp-data=1.0.1-5 libcifpp1=1.0.1-5 libcom-err2=1.46.4-1 libcommons-logging-java=1.2-2 libcommons-parent-java=43-1 libcrypt-dev=1:4.4.26-1 libcrypt1=1:4.4.26-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libcups2=2.3.3op2-7 libcurl3-gnutls=7.79.1-2 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.12.20-3 libdebconfclient0=0.261 libdebhelper-perl=13.5.2 libdeflate0=1.8-1 libdpkg-perl=1.20.9 libedit2=3.1-20210910-1 libelf1=0.186-1 libevent-core-2.1-7=2.1.12-stable-1 libevent-pthreads-2.1-7=2.1.12-stable-1 libexpat1=2.4.1-3 libexpat1-dev=2.4.1-3 libfabric1=1.11.0-2 libffi8=3.4.2-3 libfido2-1=1.9.0-1 libfile-stripnondeterminism-perl=1.12.1-1 libfontbox-java=1:1.8.16-2 libfontconfig1=2.13.1-4.2 libfreetype6=2.11.0+dfsg-1 libfribidi0=1.0.8-2 libgcc-11-dev=11.2.0-12 libgcc-s1=11.2.0-12 libgcrypt20=1.9.4-4 libgd3=2.3.0-2 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgfortran5=11.2.0-12 libglib2.0-0=2.70.1-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-2 libgomp1=11.2.0-12 libgpg-error0=1.42-3 libgraphite2-3=1.3.14-1 libgs9=9.55.0~dfsg-3 libgs9-common=9.55.0~dfsg-3 libgssapi-krb5-2=1.18.3-7 libharfbuzz0b=2.7.4-1 libhogweed6=3.7.3-1 libhpdf-2.3.0=2.3.0+dfsg-1+b1 libhts3=1.13+ds-2 libhtscodecs2=1.1.1-3+b1 libhwloc-plugins=2.6.0-1 libhwloc15=2.6.0-1 libibverbs1=38.0-1 libice6=2:1.0.10-1 libicu67=67.1-7 libidn12=1.38-4 libidn2-0=2.3.2-2 libijs-0.35=0.35-15 libimagequant0=2.12.2-1.1 libisl23=0.24-2 libitm1=11.2.0-12 libjbig0=2.1-3.1+b2 libjbig2dec0=0.19-3 libjpeg62-turbo=1:2.1.2-1 libjs-jquery=3.5.1+dfsg+~3.5.5-8 libjs-jquery-ui=1.13.0+dfsg-1 libjs-sphinxdoc=4.3.1-1 libjs-underscore=1.9.1~dfsg-4 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkpathsea6=2021.20210626.59705-1 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-1 liblbfgsb0=3.0+dfsg.3-9 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.59+dfsg-1 liblmdb0=0.9.24-1 liblsan0=11.2.0-12 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmariadb3=1:10.6.5-1 libmbedcrypto3=2.16.11-0.3 libmbedtls12=2.16.11-0.3 libmbedx509-0=2.16.11-0.3 libmd0=1.0.4-1 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncurses6=6.3-1 libncursesw6=6.3-1 libnetpbm10=2:10.0-15.4 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnl-3-200=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma1=2.0.14-3 libopenjp2-7=2.4.0-3 libopenmpi3=4.1.2-1 libp11-kit0=0.24.0-5 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpciaccess0=0.16-1 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libpdfbox-java=1:1.8.16-2 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libpixman-1-0=0.40.0-1 libpmix2=4.1.1~rc5-1+b1 libpng16-16=1.6.37-3 libpq5=14.1-1 libpsl5=0.21.0-1.2 libpsm-infinipath1=3.3+20.604758e7-6.1 libpsm2-2=11.2.185-1 libptexenc1=2021.20210626.59705-1 libpython3-all-dev=3.9.8-1 libpython3-dev=3.9.8-1 libpython3-stdlib=3.9.8-1 libpython3.10=3.10.0-5 libpython3.10-dev=3.10.0-5 libpython3.10-minimal=3.10.0-5 libpython3.10-stdlib=3.10.0-5 libpython3.9=3.9.9-1 libpython3.9-dev=3.9.9-1 libpython3.9-minimal=3.9.9-1 libpython3.9-stdlib=3.9.9-1 libqhull-r8.0=2020.2-4 libquadmath0=11.2.0-12 libraqm0=0.7.0-4 librdmacm1=38.0-1 libreadline8=8.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-2 libsasl2-modules-db=2.1.27+dfsg2-2 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsemanage-common=3.3-1 libsemanage2=3.3-1+b1 libsepol2=3.3-1 libsigsegv2=2.13-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.2-4 libsqlite3-0=3.36.0-2 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-12 libstdc++6=11.2.0-12 libsub-override-perl=0.09-2 libsynctex2=2021.20210626.59705-1 libsystemd0=249.7-1 libtasn1-6=4.18.0-4 libteckit0=2.5.11+ds1-1 libtexlua53=2021.20210626.59705-1 libtexluajit2=2021.20210626.59705-1 libtiff5=4.3.0-2 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-12 libubsan1=11.2.0-12 libuchardet0=0.0.7-1 libucx0=1.11.2-1 libudev1=249.7-1 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libwebp6=0.6.1-2.1 libwebpdemux2=0.6.1-2.1 libwebpmux3=0.6.1-2.1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libxau6=1:1.0.9-1 libxaw7=2:1.0.13-1.1 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxi6=2:1.8-1 libxml2=2.9.12+dfsg-5+b1 libxmu6=2:1.1.2-2+b3 libxnvctrl0=470.82.00-1 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxslt1.1=1.1.34-4 libxt6=1:1.2.0-1 libzstd1=1.4.8+dfsg-3 libzzip-0-13=0.13.72+dfsg.1-1.1 linux-libc-dev=5.15.5-1 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 mafft=7.490-1 mailcap=3.70+nmu1 make=4.3-4.1 man-db=2.9.4-2 mariadb-common=1:10.5.12-1 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 muscle=1:3.8.1551-2 mysql-common=5.8+1.0.7 ncbi-blast+=2.12.0+ds-2 ncbi-data=6.1.20170106+dfsg1-9 ncurses-base=6.3-1 ncurses-bin=6.3-1 netpbm=2:10.0-15.4 ocl-icd-libopencl1=2.2.14-3 openmpi-bin=4.1.2-1 openmpi-common=4.1.2-1 openssh-client=1:8.7p1-2 passwd=1:4.8.1-2 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 phylip=1:3.697+dfsg-2 phyml=3:3.3.20211021-1 po-debconf=1.0.21+nmu1 poppler-data=0.4.11-1 prank=0.0.170427+dfsg-3 preview-latex-style=12.2-1 probcons=1.12-14 python-matplotlib-data=3.5.0-2 python3=3.9.8-1 python3-all=3.9.8-1 python3-all-dev=3.9.8-1 python3-appdirs=1.4.4-1 python3-attr=20.3.0-1 python3-brotli=1.0.9-2+b3 python3-cycler=0.11.0-1 python3-dateutil=2.8.1-6 python3-decorator=4.4.2-2 python3-dev=3.9.8-1 python3-distutils=3.9.9-2 python3-fonttools=4.27.1-1+b1 python3-fs=2.4.12-1 python3-isodate=0.6.0-2 python3-kiwisolver=1.3.2-1+b1 python3-lib2to3=3.9.9-2 python3-linecache2=1.0.0-4 python3-lxml=4.6.4-1 python3-lz4=3.1.3+dfsg-1+b1 python3-matplotlib=3.5.0-2 python3-minimal=3.9.8-1 python3-mmtf=1.1.2-3 python3-mpmath=1.2.1-2 python3-msgpack=1.0.2-2+b1 python3-mysqldb=1.4.6-1+b1 python3-networkx=2.5+ds-2 python3-numpy=1:1.21.4-2 python3-packaging=21.3-1 python3-pil=8.4.0-1 python3-pkg-resources=59.2.0-1 python3-psycopg2=2.9.1-1+b1 python3-pygments=2.7.1+dfsg-2.1 python3-pyparsing=2.4.7-1 python3-rdflib=5.0.0-1.1 python3-renderpm=3.6.2-1 python3-reportlab=3.6.2-1 python3-reportlab-accel=3.6.2-1 python3-scipy=1.7.1-2+b1 python3-setuptools=59.2.0-1 python3-six=1.16.0-2 python3-sympy=1.7.1-3 python3-traceback2=1.4.0-6 python3-tz=2021.3-1 python3-ufolib2=0.11.1+dfsg1-1 python3-unittest2=1.1.0-8 python3.10=3.10.0-5 python3.10-dev=3.10.0-5 python3.10-minimal=3.10.0-5 python3.9=3.9.9-1 python3.9-dev=3.9.9-1 python3.9-minimal=3.9.9-1 raxml=8.2.12+dfsg-7 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 samtools=1.13-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 t-coffee=13.41.0.28bdc39+dfsg-4 t1utils=1.41-4 tar=1.34+dfsg-1 tex-common=6.17 texlive-base=2021.20211127-1 texlive-binaries=2021.20210626.59705-1 texlive-fonts-recommended=2021.20211127-1 texlive-latex-base=2021.20211127-1 texlive-latex-extra=2021.20211127-1 texlive-latex-recommended=2021.20211127-1 texlive-pictures=2021.20211127-1 tzdata=2021e-1 ucf=3.0043 unicode-data=14.0.0-1.1 util-linux=2.37.2-4 wise=2.4.1-23 wise-data=2.4.1-23 x11-common=1:7.7+23 xdg-utils=1.1.3-4.1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211025T025314Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211025T025314Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211202T150902Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d python-biopython=1.79+dfsg-1 && mkdir -p /build/python-biopython-Ir8JRM && dpkg-source --no-check -x /*.dsc /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg && cd /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg && { printf '%s' 'python-biopython (1.79+dfsg-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Add Python 3.10 as supported version -- amd64 / i386 Build Daemon (x86-ubc-02) Thu, 02 Dec 2021 05:59:00 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/python-biopython-Ir8JRM" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1638424740" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/python-biopython-Ir8JRM /tmp/python-biopython-1.79+dfsg-1+b16r86we3k bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211202T150902Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.OZViho3kVF as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.OZViho3kVF Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211202T150902Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211202T150902Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (836 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4673 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211025T025314Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211025T025314Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211202T150902Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.OZViho3kVF Get:1 http://snapshot.notset.fr/archive/debian/20211025T025314Z bookworm InRelease [128 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211202T150902Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211025T025314Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211025T025314Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211025T025314Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211025T025314Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211025T025314Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211025T025314Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211025T025314Z bookworm/main Sources [11.7 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211025T025314Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.1 MB in 20s (1179 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.OZViho3kVF I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d python-biopython=1.79+dfsg-1 && mkdir -p /build/python-biopython-Ir8JRM && dpkg-source --no-check -x /*.dsc /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg && cd /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg && { printf '%s' 'python-biopython (1.79+dfsg-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Add Python 3.10 as supported version -- amd64 / i386 Build Daemon (x86-ubc-02) Thu, 02 Dec 2021 05:59:00 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/python-biopython-Ir8JRM"' exec /tmp/mmdebstrap.OZViho3kVF Reading package lists... NOTICE: 'python-biopython' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-biopython.git Please use: git clone https://salsa.debian.org/med-team/python-biopython.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 9883 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211025T025314Z bookworm/main python-biopython 1.79+dfsg-1 (dsc) [3224 B] Get:2 http://snapshot.notset.fr/archive/debian/20211025T025314Z bookworm/main python-biopython 1.79+dfsg-1 (tar) [9861 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211025T025314Z bookworm/main python-biopython 1.79+dfsg-1 (diff) [18.3 kB] Fetched 9883 kB in 8s (1273 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'python-biopython_1.79+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting python-biopython in /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg dpkg-source: info: unpacking python-biopython_1.79+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biopython_1.79+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_mathml-qname.patch dpkg-source: info: applying privacy_breach.patch dpkg-source: info: applying privacy_breach_ie9.patch dpkg-source: info: applying fix-use-of-unversioned-python.patch dpkg-source: info: applying reproduciblebuild.patch dpkg-source: info: applying mkdssp4.patch dpkg-source: info: applying adjust-test_GraphicsBitmaps.patch dpkg-source: info: applying spelling.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1638424740" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.OZViho3kVF dpkg-buildpackage: info: source package python-biopython dpkg-buildpackage: info: source version 1.79+dfsg-1+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-ubc-02) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg' dh_auto_clean install -d /build/python-biopython-Ir8JRM/python-biopython-1.79\+dfsg/debian/.debhelper/generated/_source/home pybuild --clean -i python{version} -p "3.10 3.9" I: pybuild base:237: python3.10 setup.py clean running clean removing '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it I: pybuild base:237: python3.9 setup.py clean running clean removing '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; cd Doc && make distclean make[2]: Entering directory '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/Doc' ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux ( for f in ; do make distclean -C $f ; done ) rm -f version.sh rm -f biopdb_faq.pdf rm -f Tutorial.pdf rm -f Tutorial.html rm -f Tutorial.txt rm -f *_motif.gif #output from hacha make[2]: Leaving directory '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/Doc' rm -f Doc/install/Installation.pdf rm -f Doc/install/Installation.txt rm -f Doc/install/Installation.html rm -f Doc/Tutorial.pdf Doc/biopdb_faq.pdf rm -f Doc/Tutorial/*.aux find Doc -name "*.pygtex" -o -name "*.pygstyle" -delete rm -rf biopython.egg-info rm -rf .pybuild if [ -d Tests_avoid ] ; then \ mv Tests_avoid/* Tests ; \ rmdir Tests_avoid ; \ fi rm -rf debian/tmp_tests make[1]: Leaving directory '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars debian/files rm -fr -- debian/python3-biopython/ debian/tmp/ debian/python-biopython-doc/ debian/python3-biopython-sql/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild install -d /build/python-biopython-Ir8JRM/python-biopython-1.79\+dfsg/debian/.debhelper/generated/_source/home pybuild --configure -i python{version} -p "3.10 3.9" I: pybuild base:237: python3.10 setup.py config running config I: pybuild base:237: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg' dh_auto_build pybuild --build -i python{version} -p "3.10 3.9" I: pybuild base:237: /usr/bin/python3.10 setup.py build running build running build_py creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/File.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/LogisticRegression.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/MarkovModel.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/MaxEntropy.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/NaiveBayes.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/Seq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/SeqFeature.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/SeqRecord.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/_utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/bgzf.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/kNN.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/pairwise2.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Affy copying Bio/Affy/CelFile.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Affy copying Bio/Affy/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Affy creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align copying Bio/Align/AlignInfo.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align copying Bio/Align/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Alphabet creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Application copying Bio/Application/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Application creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/Applications.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/Record.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/CAPS creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Compass copying Bio/Compass/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Compass creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/CodonTable.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/IUPACData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/SCOPData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/Record.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Geo copying Bio/Geo/Record.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Geo copying Bio/Geo/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Geo creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/Trainer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/Utilities.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG copying Bio/KEGG/REST.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Map creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Medline copying Bio/Medline/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Medline creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/alignace.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/clusterbuster.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/mast.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/matrix.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/meme.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/minimal.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/pfm.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/thresholds.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/transfac.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/xms.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR copying Bio/NMR/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR copying Bio/NMR/xpktools.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Atom.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Chain.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Dice.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Entity.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Model.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBList.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PICIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PSEA.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Residue.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/SASA.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/SCADIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Selection.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Structure.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/ic_data.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/ic_rebuild.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/internal_coords.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/vectors.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/DSSP.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Des.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SwissProt creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/TogoWS creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/_io.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniGene creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniProt creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise copying Bio/Wise/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise copying Bio/Wise/dnal.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise copying Bio/Wise/psw.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/BioSeq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/DBUtils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/Loader.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL running egg_info creating biopython.egg-info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt writing manifest file 'biopython.egg-info/SOURCES.txt' reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' copying Bio/cpairwise2module.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio copying Bio/Align/_aligners.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/PDB/kdtrees.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer running build_ext building 'Bio.Align._aligners' extension creating build creating build/temp.linux-x86_64-3.10 creating build/temp.linux-x86_64-3.10/Bio creating build/temp.linux-x86_64-3.10/Bio/Align x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Align/_aligners.c -o build/temp.linux-x86_64-3.10/Bio/Align/_aligners.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/Align/_aligners.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so building 'Bio.cpairwise2' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-3.10/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function ‘_get_match_score’: Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.10/Python.h:131, from Bio/cpairwise2module.c:16: /usr/include/python3.10/ceval.h:17:43: note: declared here 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/cpairwise2module.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-x86_64-3.10/Bio/Nexus x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-3.10/Bio/Nexus/cnexus.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/Nexus/cnexus.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-x86_64-3.10/Bio/PDB creating build/temp.linux-x86_64-3.10/Bio/PDB/QCPSuperimposer x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-x86_64-3.10/Bio/PDB/QCPSuperimposer/qcprotmodule.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-x86_64-3.10/Bio/motifs x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-3.10/Bio/motifs/_pwm.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/motifs/_pwm.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-x86_64-3.10/Bio/Cluster x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-3.10/Bio/Cluster/cluster.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-3.10/Bio/Cluster/clustermodule.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/Cluster/cluster.o build/temp.linux-x86_64-3.10/Bio/Cluster/clustermodule.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so building 'Bio.PDB.kdtrees' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-3.10/Bio/PDB/kdtrees.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/PDB/kdtrees.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-x86_64-3.10/Bio/SeqIO x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-3.10/Bio/SeqIO/_twoBitIO.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/SeqIO/_twoBitIO.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so I: pybuild base:237: /usr/bin/python3 setup.py build running build running build_py creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/File.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/LogisticRegression.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/MarkovModel.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/MaxEntropy.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/NaiveBayes.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/Seq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/SeqFeature.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/SeqRecord.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/_utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/bgzf.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/kNN.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/pairwise2.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy copying Bio/Affy/CelFile.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy copying Bio/Affy/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align copying Bio/Align/AlignInfo.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align copying Bio/Align/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Alphabet creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Application copying Bio/Application/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Application creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/Applications.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/Record.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass copying Bio/Compass/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/CodonTable.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/IUPACData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/SCOPData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/Record.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo copying Bio/Geo/Record.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo copying Bio/Geo/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/Trainer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/Utilities.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG copying Bio/KEGG/REST.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline copying Bio/Medline/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/alignace.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/clusterbuster.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/mast.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/matrix.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/meme.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/minimal.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/pfm.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/thresholds.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/transfac.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/xms.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR copying Bio/NMR/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR copying Bio/NMR/xpktools.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Atom.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Chain.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Dice.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Entity.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Model.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBList.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PICIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PSEA.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Residue.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/SASA.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/SCADIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Selection.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Structure.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/ic_data.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/ic_rebuild.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/internal_coords.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/vectors.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/DSSP.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Des.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/_io.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise copying Bio/Wise/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise copying Bio/Wise/dnal.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise copying Bio/Wise/psw.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/BioSeq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/DBUtils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/Loader.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' copying Bio/cpairwise2module.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/Align/_aligners.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/PDB/kdtrees.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer running build_ext building 'Bio.Align._aligners' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/Bio creating build/temp.linux-x86_64-3.9/Bio/Align x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Align/_aligners.c -o build/temp.linux-x86_64-3.9/Bio/Align/_aligners.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/Align/_aligners.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so building 'Bio.cpairwise2' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-3.9/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function ‘_get_match_score’: Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.9/Python.h:141, from Bio/cpairwise2module.c:16: /usr/include/python3.9/ceval.h:17:43: note: declared here 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/cpairwise2module.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-x86_64-3.9/Bio/Nexus x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-3.9/Bio/Nexus/cnexus.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/Nexus/cnexus.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-x86_64-3.9/Bio/PDB creating build/temp.linux-x86_64-3.9/Bio/PDB/QCPSuperimposer x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-x86_64-3.9/Bio/PDB/QCPSuperimposer/qcprotmodule.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-x86_64-3.9/Bio/motifs x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-3.9/Bio/motifs/_pwm.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/motifs/_pwm.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-x86_64-3.9/Bio/Cluster x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-3.9/Bio/Cluster/cluster.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-3.9/Bio/Cluster/clustermodule.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/Cluster/cluster.o build/temp.linux-x86_64-3.9/Bio/Cluster/clustermodule.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so building 'Bio.PDB.kdtrees' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-3.9/Bio/PDB/kdtrees.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/PDB/kdtrees.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-x86_64-3.9/Bio/SeqIO x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-3.9/Bio/SeqIO/_twoBitIO.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/SeqIO/_twoBitIO.o -o /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/_twoBitIO.cpython-39-x86_64-linux-gnu.so cd Doc && make make[2]: Entering directory '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/Doc' sed "s/\@VERSION\@/1.79/g" version.in > version.sh chmod +x version.sh hevea -exec ./version.sh -exec xxdate.exe -fix Tutorial.tex Exclude comment 'comment' ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:99: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:100: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:186: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:192: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined 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math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:220: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:345: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_graphics.tex:352: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: 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\item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:58: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:146: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_cookbook.tex:199: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:204: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_cookbook.tex:336: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_cookbook.tex:441: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:455: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_cookbook.tex:641: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:644: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_cookbook.tex:800: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:822: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:824: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_cookbook.tex:838: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:905: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:1021: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_cookbook.tex:1038: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:1413: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_cookbook.tex:1416: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1420: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_cookbook.tex:1431: Warning: Undefined label: 'sec:consensus' ./Tutorial/chapter_cookbook.tex:1432: Warning: Undefined label: 'sec:pssm' ./Tutorial/chapter_cookbook.tex:1433: Warning: Undefined label: 'sec:getting_info_content' ./Tutorial/chapter_cookbook.tex:1434: Warning: Undefined label: 'sec:sub_matrix' ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1560: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1612: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1635: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_cookbook.tex:1741: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_testing.tex:55: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_testing.tex:282: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_advanced.tex:36: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_advanced.tex:162: Warning: Undefined label: 'sec:freq_table' ./Tutorial/chapter_advanced.tex:222: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:32: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:85: Warning: Undefined label: 'chapter:testing' ./Tutorial/chapter_contributing.tex:101: Warning: Undefined label: 'chapter:testing' ./Tutorial/chapter_appendix.tex:91: Warning: Undefined label: 'sec:SeqIO_compressed' HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:584: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:957: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2555: Warning: Multiple definitions for label: sec:pairwise-general-gapscores ./Tutorial/chapter_align.tex:2969: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:593: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:607: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:684: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1121: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1183: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:352: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1416: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1612: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_advanced.tex:222: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode Fixpoint reached in 2 step(s) hevea -exec ./version.sh -exec xxdate.exe -fix -text Tutorial.tex Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial.htoc:362: Warning: Application of '\"' on 'i' failed ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text 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'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1992: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1992: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in 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'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2224: Warning: Undefined 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'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined 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line too long ./Tutorial/chapter_align.tex:2493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2555: Warning: Multiple definitions for label: sec:pairwise-general-gapscores ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2695: Warning: line too long ./Tutorial/chapter_align.tex:2696: Warning: line too long ./Tutorial/chapter_align.tex:2697: Warning: line too long ./Tutorial/chapter_align.tex:2727: Warning: line too long ./Tutorial/chapter_align.tex:2728: Warning: line too long ./Tutorial/chapter_align.tex:2729: Warning: line too long ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2969: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2975: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2975: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:59: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:59: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:437: Warning: line too long ./Tutorial/chapter_blast.tex:439: Warning: line too long ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:453: Warning: Image in text ./Tutorial/chapter_blast.tex:469: Warning: Image in text ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:499: Warning: Undefined block in text mode: 'CODE' [] 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occurring outside math mode ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined 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line too long ./Tutorial/chapter_cluster.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:747: Warning: overfull line in array : array too wide ./Tutorial/chapter_cluster.tex:747: Warning: line too long ./Tutorial/chapter_cluster.tex:747: Warning: line too long ./Tutorial/chapter_cluster.tex:753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:756: Warning: Undefined block in text mode: 'CODE' [] 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Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.haux:547: Giving up command: \@hevea@cbrace ./Tutorial.tex:73: Giving up command: \input ./Tutorial.tex:73: Warning: Failure while reading .haux ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] 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Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:169: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio' 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./Tutorial/chapter_seq_objects.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:719: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:719: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:744: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:757: Warning: Undefined block in text mode: 'CODE' [] 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in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:21: 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./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:49: Warning: Undefined block in 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./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:695: Warning: line too long ./Tutorial/chapter_seq_annot.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:710: Warning: line too long ./Tutorial/chapter_seq_annot.tex:731: Warning: line too long ./Tutorial/chapter_seq_annot.tex:731: Warning: line too long ./Tutorial/chapter_seq_annot.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:742: Warning: line too long ./Tutorial/chapter_seq_annot.tex:749: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:749: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:752: Warning: line too long ./Tutorial/chapter_seq_annot.tex:773: Warning: line too long ./Tutorial/chapter_seq_annot.tex:773: Warning: line too long ./Tutorial/chapter_seq_annot.tex:820: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:832: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:833: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:862: Warning: Undefined 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text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:29: Warning: Undefined block in text mode: 'CODE' [] 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occurring outside math mode ./Tutorial/chapter_seqio.tex:249: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:294: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:294: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:295: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:295: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:310: Warning: Undefined label: 'sec:writing-sequence-files' ./Tutorial/chapter_seqio.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:311: Warning: Undefined block in 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'CODE' [] ./Tutorial/chapter_seqio.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:401: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode 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mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:745: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:745: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:781: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:784: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:784: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:786: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:807: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:807: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:807: Warning: Undefined label: 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./Tutorial/chapter_seqio.tex:937: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:937: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:950: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:950: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:951: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:982: Warning: Undefined block in text mode: 'CODE' [] 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'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1070: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1070: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in 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'CODE' [] ./Tutorial/chapter_seqio.tex:1386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1404: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:11: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:467: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:467: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:635: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:892: Warning: Undefined label: 'sec:subs_mat_ex' ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:894: Warning: Undefined block in text mode: 'CODE' [] 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'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in 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./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:2060: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2060: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in 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'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined 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long ./Tutorial/chapter_align.tex:2493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2555: Warning: Multiple definitions for label: sec:pairwise-general-gapscores ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2578: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2695: Warning: line too long ./Tutorial/chapter_align.tex:2696: Warning: line too long ./Tutorial/chapter_align.tex:2697: Warning: line too long ./Tutorial/chapter_align.tex:2727: Warning: line too long ./Tutorial/chapter_align.tex:2728: Warning: line too long ./Tutorial/chapter_align.tex:2729: Warning: line too long ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined 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./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3319: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:3319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:3391: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3415: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:59: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:59: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:286: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:288: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:303: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_blast.tex:306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:339: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:437: Warning: line too long ./Tutorial/chapter_blast.tex:439: Warning: line too long ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:449: Warning: Undefined label: 'fig:blastrecord' ./Tutorial/chapter_blast.tex:453: Warning: Image in text ./Tutorial/chapter_blast.tex:465: Warning: Undefined label: 'fig:psiblastrecord' ./Tutorial/chapter_blast.tex:469: Warning: Image in text ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:485: 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./Tutorial/chapter_pdb.tex:467: Warning: Undefined label: 'sec:point_mutations' ./Tutorial/chapter_pdb.tex:484: Warning: Undefined label: 'sec:disordered_atoms' ./Tutorial/chapter_pdb.tex:593: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:607: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:611: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:658: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:684: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:761: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:761: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:771: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_motifs.tex:1512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1532: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1532: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1564: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1566: Warning: '_' occurring outside math mode ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] 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'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'lecuyer1988' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'kachitvichyanukul1988' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:35: Warning: Undefined block in text 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failed ./Tutorial/chapter_cluster.tex:112: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cluster.tex:115: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:154: Warning: Undefined citation: 'snedecor1989' ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: 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./Tutorial/chapter_cluster.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: 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./Tutorial/chapter_cluster.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:624: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:624: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: 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./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:645: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:646: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:649: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:649: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:653: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:653: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:659: Warning: Undefined citation: 'yeung2001' ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined citation: 'golub1971' ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:669: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:674: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:674: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:682: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:682: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:691: 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text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:163: Warning: Image in text ./Tutorial/chapter_graphics.tex:163: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:220: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_graphics.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:277: Warning: Undefined block in text 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occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: Image in text ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: Image in text ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: 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[]\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [60] (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1385--1389 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:cookbook' on page 61 undefined on input line 1404. (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8 A4A36.pygtex)) [61] (./Tutorial/chapter_align.tex Chapter 6. LaTeX Warning: Reference `sec:appendix-handles' on page 62 undefined on input l ine 31. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() LaTeX Warning: Reference `sec:SeqIO-conversion' on page 70 undefined on input l ine 444. 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LaTeX Warning: Float too large for page by 32.27644pt on input line 478. ) [124] [125 <./images/BlastRecord.png>] [126 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [127] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [128]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [129]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [130]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [131] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [132]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [133]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [134] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [135] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [136]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C78767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seq_annot' on page 137 undefined on input lin e 734. Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [137]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [138]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [139] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [140] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. 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LaTeX Warning: Citation `talevich2012' on page 206 undefined on input line 9. (./_minted-Tutorial/8F8EFC1C83277AE6C5B5A259FAAC56710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/4914B4679D1C933D9AD76E95F18CE1586EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/3D758844BE2A5D4414B741470EDE8C2467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/719B0C758B666CDEEB2B250C2143A4AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [206]) (./_minted-Tutorial/8698B66B622D8A91E7706D889D5F35DD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `fig:phylo-simple-draw' on page 207 undefined on input line 96. (./_minted-Tutorial/3E6F23F473B4E07E8F7181EEE5B0B4A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [207] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `fig:phylo-color-draw' on page 208 undefined on input line 192. 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[211] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [212 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. 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LaTeX Warning: Citation `dehoon2004' on page 245 undefined on input line 6. LaTeX Warning: Citation `lecuyer1988' on page 245 undefined on input line 30. LaTeX Warning: Citation `kachitvichyanukul1988' on page 245 undefined on input line 30. [245] [246] [247] LaTeX Warning: Citation `snedecor1989' on page 248 undefined on input line 154. [248] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 249 undefined on input line 183. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . LaTeX Warning: Reference `sec:SeqRecord-slicing' on page 317 undefined on input line 478. 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(./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE210C640781732628151051B15D85C 9070A.pygtex [333]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA481453514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F900C640781732628151051B15D85C 9070A.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . 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For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA5067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [337]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 338 undefined on input line 17 41. ) [338] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD06216EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D046EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D90736EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) LaTeX Warning: Reference `sec:doctest' on page 339 undefined on input line 55. 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(4.48064pt too wide) in paragraph at lines 894--897 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [60]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A277767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [61] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) 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[]\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [67] (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1385--1389 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8 A4A36.pygtex)) [68] (./Tutorial/chapter_align.tex Chapter 6. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F402467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C 9070A.pygtex [77]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C 9070A.pygtex [78]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C 9070A.pygtex [79]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [80] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [81]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B7169267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB0067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [82]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A925367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E139611EBF30A11F71B774B00CB422D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [83] (./_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [84] (./_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F5367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E89367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C6306467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [85]) (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A44267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F98636867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [86]) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B04567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1128--1132 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/008DB28D2F01F3F29F1F82EB0591003367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AE24E0D965703AA4106AE5CF699F0A9A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [87]) (./_minted-Tutorial/801A8AB951B5DA791C92C02EB6139DB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/80957FF2744A858A2D626820D87665F167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [88]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E745467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4AEB9BD8A76F10ACD8C01403E911E8C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/512DFE88FFA610D4550AF5A23966733167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [89] (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/482576AF06E80D82290535FF7857A24067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [90] (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC72660C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/798933B773DD1AAF5C2DC54E06491DCF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/44B6EBA222E5AE2CF0E223148840D8AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF38567467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4988824A3CF97A3309EED328C1CB00D167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [91]) (./_minted-Tutorial/DF151703751D72BD556402B910190A8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA8867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) [92] (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B28841A01F9F481844677E14CA7D2A367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2203C1F3E2BE8BEF505556D02F8F382C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9AC50DD22A56E4DC2B26465D89DE35EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFB7E0A19AF729834746B283E60F209167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [93]) (./_minted-Tutorial/7DA73F8FE9E6D95C2255220886791B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E9F207F5DA488246642864EBF9EA466D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/15FD2886E49804AE97038F2733592C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [94]) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (0.78606pt too wide) in paragraph at lines 1686--1689 \OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three- (./_minted-Tutorial/554024580088332FAF0EA9296BACE82E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E36167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0ED9274F8C36E3C47BA70FD5BADC364467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [95]) (./_minted-Tutorial/A6265A24C74E31AABCC4CBCDC431287F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71831DAF6DA69540332844566CA78C5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E5E00F47BD7A0C8BC5F881852628386867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [96]) (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0EDAB1611DCCA854E910FF7DD9D639FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [97]) (./_minted-Tutorial/F08297D25DBB0EC458EEDF5510780E9567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3DC3D3FA19AFC359663B271CAF187B4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17CE58BCB76575958EE7A76C89836E6967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [98]) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1903--1907 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1903--1907 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score Overfull \hbox (32.852pt too wide) in paragraph at lines 1972--2016 [][] [99] (./_minted-Tutorial/52E7DD48238DDBFB9DE1318A616EEA0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FBB2100548FA74FADE3EAE28A2DE191167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [100] [101]) (./_minted-Tutorial/9EAAC9128F41783D91F19053824A0E3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B788F0FBC120E74A47922EA232EB867167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC2E9641A86FDB767AE88F57311BBC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [102]) (./_minted-Tutorial/DE91DA6F7C30BDD779CED0A91AB75DAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A59C6CF4854355E98CC312686998A38B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9680AE27F087032C33AE5BA458DF8E9C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) 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Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 478. ) [131] [132 <./images/BlastRecord.png>] [133 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [134] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [135]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [136]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [137]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [138] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [139]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [140]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [141] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [142] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [143]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C78767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [144]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [145]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [146] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [147] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C7346067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [148]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E986867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C993367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [149] [150] (./Tutorial/chapter_entrez.tex Chapter 9. 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(./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [214] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [215 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. 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[218] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [219 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [220] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF614FA033DCB1376922271CBD58A8 A4A36.pygtex) [221] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF279167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 708--711 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [222] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [223]) [224] (./Tutorial/chapter_motifs.tex Chapter 14. 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[252] [253] [254] [255] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE60173582767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A250014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [256]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB3467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [257] [258] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [259] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF9262667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [260] [261] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . 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[333] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD14FA033DCB1376922271CBD58A8 A4A36.pygtex [334 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF714FA033DCB1376922271CBD58A8 A4A36.pygtex) [335 <./images/gc_plot.png>] (./_minted-Tutorial/80A47C8780CE3021D53829563E81665614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F414FA033DCB1376922271CBD58A8 A4A36.pygtex [336 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/24C65C38DAD936B7AA15C7ED02EA36B314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD14FA033DCB1376922271CBD58A8 A4A36.pygtex [337]) Excluding 'htmlonly' comment. (./_minted-Tutorial/601CCA4B782F1DA528DB81B02480319514FA033DCB1376922271CBD58A8 A4A36.pygtex [338 <./images/dot_plot_scatter.png>]) Excluding 'htmlonly' comment. [339 <./images/SRR001666.png>] (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC7314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE210C640781732628151051B15D85C 9070A.pygtex [340]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA481453514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F900C640781732628151051B15D85C 9070A.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . 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For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA5067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [344]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [345] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD06216EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D046EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D90736EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [346] (./_minted-Tutorial/68D5F2D4CFDBBFF65405364F54DA0BCC0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [347]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A714FA033DCB1376922271CBD58A8 A4A36.pygtex) [348] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706E14FA033DCB1376922271CBD58A8 A4A36.pygtex [349]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F46EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA2914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B829771114FA033DCB1376922271CBD58A8 A4A36.pygtex [350]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [351] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B034566EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC436EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex)) [352] (./Tutorial/chapter_advanced.tex Chapter 22. Overfull \hbox (61.48412pt too wide) in paragraph at lines 42--44 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 { (i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk} [353] (./_minted-Tutorial/B9AA829C45C3718734961EED663138A314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C91962005319864FA8A80F7CE461D6C614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D000C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F047250C640781732628151051B15D85C 9070A.pygtex) [354] (./_minted-Tutorial/01598304B617194419D3D22E288DDBB414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A379814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/092222FC5487DB13D5744BF56515DC5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F90C13646B17B56314C7FA6500465F7F14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (30.74179pt too wide) in paragraph at lines 196--197 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/73F214546259C26F0E69498480C6F5E414FA033DCB1376922271CBD58A8 A4A36.pygtex [355]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB280C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B38314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [356] (./Tutorial/chapter_contributing.tex Chapter 23. 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(4.48064pt too wide) in paragraph at lines 894--897 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [60]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A277767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [61] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) 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[]\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [67] (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1385--1389 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8 A4A36.pygtex)) [68] (./Tutorial/chapter_align.tex Chapter 6. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F402467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C 9070A.pygtex [77]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C 9070A.pygtex [78]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C 9070A.pygtex [79]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [80] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [81]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B7169267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB0067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [82]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A925367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E139611EBF30A11F71B774B00CB422D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [83] (./_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [84] (./_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F5367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E89367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C6306467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [85]) (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A44267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F98636867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [86]) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B04567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1128--1132 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/008DB28D2F01F3F29F1F82EB0591003367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AE24E0D965703AA4106AE5CF699F0A9A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [87]) (./_minted-Tutorial/801A8AB951B5DA791C92C02EB6139DB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/80957FF2744A858A2D626820D87665F167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [88]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E745467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4AEB9BD8A76F10ACD8C01403E911E8C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/512DFE88FFA610D4550AF5A23966733167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [89] (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/482576AF06E80D82290535FF7857A24067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [90] (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC72660C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/798933B773DD1AAF5C2DC54E06491DCF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/44B6EBA222E5AE2CF0E223148840D8AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF38567467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4988824A3CF97A3309EED328C1CB00D167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [91]) (./_minted-Tutorial/DF151703751D72BD556402B910190A8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA8867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) [92] (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B28841A01F9F481844677E14CA7D2A367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2203C1F3E2BE8BEF505556D02F8F382C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9AC50DD22A56E4DC2B26465D89DE35EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFB7E0A19AF729834746B283E60F209167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [93]) (./_minted-Tutorial/7DA73F8FE9E6D95C2255220886791B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E9F207F5DA488246642864EBF9EA466D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/15FD2886E49804AE97038F2733592C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [94]) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (0.78606pt too wide) in paragraph at lines 1686--1689 \OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three- (./_minted-Tutorial/554024580088332FAF0EA9296BACE82E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E36167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0ED9274F8C36E3C47BA70FD5BADC364467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [95]) (./_minted-Tutorial/A6265A24C74E31AABCC4CBCDC431287F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71831DAF6DA69540332844566CA78C5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E5E00F47BD7A0C8BC5F881852628386867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [96]) (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0EDAB1611DCCA854E910FF7DD9D639FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [97]) (./_minted-Tutorial/F08297D25DBB0EC458EEDF5510780E9567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3DC3D3FA19AFC359663B271CAF187B4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17CE58BCB76575958EE7A76C89836E6967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [98]) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1903--1907 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1903--1907 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score Overfull \hbox (32.852pt too wide) in paragraph at lines 1972--2016 [][] [99] (./_minted-Tutorial/52E7DD48238DDBFB9DE1318A616EEA0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FBB2100548FA74FADE3EAE28A2DE191167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [100] [101]) (./_minted-Tutorial/9EAAC9128F41783D91F19053824A0E3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B788F0FBC120E74A47922EA232EB867167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC2E9641A86FDB767AE88F57311BBC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [102]) (./_minted-Tutorial/DE91DA6F7C30BDD779CED0A91AB75DAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A59C6CF4854355E98CC312686998A38B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9680AE27F087032C33AE5BA458DF8E9C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) 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Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 478. ) [131] [132 <./images/BlastRecord.png>] [133 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [134] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [135]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [136]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [137]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [138] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [139]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [140]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [141] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [142] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [143]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C78767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [144]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [145]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [146] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [147] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C7346067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [148]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E986867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C993367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [149] [150] (./Tutorial/chapter_entrez.tex Chapter 9. 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(./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [214] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [215 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. 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[218] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [219 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [220] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF614FA033DCB1376922271CBD58A8 A4A36.pygtex) [221] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF279167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 708--711 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [222] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [223]) [224] (./Tutorial/chapter_motifs.tex Chapter 14. 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[252] [253] [254] [255] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE60173582767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A250014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [256]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB3467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [257] [258] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [259] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF9262667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [260] [261] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . 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[333] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD14FA033DCB1376922271CBD58A8 A4A36.pygtex [334 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF714FA033DCB1376922271CBD58A8 A4A36.pygtex) [335 <./images/gc_plot.png>] (./_minted-Tutorial/80A47C8780CE3021D53829563E81665614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F414FA033DCB1376922271CBD58A8 A4A36.pygtex [336 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/24C65C38DAD936B7AA15C7ED02EA36B314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD14FA033DCB1376922271CBD58A8 A4A36.pygtex [337]) Excluding 'htmlonly' comment. (./_minted-Tutorial/601CCA4B782F1DA528DB81B02480319514FA033DCB1376922271CBD58A8 A4A36.pygtex [338 <./images/dot_plot_scatter.png>]) Excluding 'htmlonly' comment. [339 <./images/SRR001666.png>] (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC7314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE210C640781732628151051B15D85C 9070A.pygtex [340]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA481453514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F900C640781732628151051B15D85C 9070A.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . 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For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA5067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [344]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [345] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD06216EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D046EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D90736EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [346] (./_minted-Tutorial/68D5F2D4CFDBBFF65405364F54DA0BCC0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [347]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A714FA033DCB1376922271CBD58A8 A4A36.pygtex) [348] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706E14FA033DCB1376922271CBD58A8 A4A36.pygtex [349]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F46EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA2914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B829771114FA033DCB1376922271CBD58A8 A4A36.pygtex [350]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [351] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B034566EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC436EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex)) [352] (./Tutorial/chapter_advanced.tex Chapter 22. Overfull \hbox (61.48412pt too wide) in paragraph at lines 42--44 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 { (i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk} [353] (./_minted-Tutorial/B9AA829C45C3718734961EED663138A314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C91962005319864FA8A80F7CE461D6C614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D000C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F047250C640781732628151051B15D85C 9070A.pygtex) [354] (./_minted-Tutorial/01598304B617194419D3D22E288DDBB414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A379814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/092222FC5487DB13D5744BF56515DC5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F90C13646B17B56314C7FA6500465F7F14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (30.74179pt too wide) in paragraph at lines 196--197 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/73F214546259C26F0E69498480C6F5E414FA033DCB1376922271CBD58A8 A4A36.pygtex [355]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB280C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B38314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [356] (./Tutorial/chapter_contributing.tex Chapter 23. 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Transcript written on Tutorial.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2021-11-15> L3 programming layer <2021-11-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file biopdb_faq.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. 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[9] LaTeX Warning: Reference `sub:Analysis' on page 10 undefined on input line 826. [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] LaTeX Warning: Reference `cap:DSSP-codes' on page 12 undefined on input line 10 41. [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `biopdb_faq.out' has changed. 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(/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 165360 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2021-11-15> L3 programming layer <2021-11-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 165360 bytes). Transcript written on biopdb_faq.log. make[2]: Leaving directory '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/Doc' make[1]: Leaving directory '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/python3-biopython.substvars rm -fr -- debian/.debhelper/generated/python3-biopython/ debian/python3-biopython/ debian/tmp/ rm -f debian/python3-biopython.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg' dh_auto_install install -d /build/python-biopython-Ir8JRM/python-biopython-1.79\+dfsg/debian/tmp pybuild --install -i python{version} -p "3.10 3.9" --dest-dir /build/python-biopython-Ir8JRM/python-biopython-1.79\+dfsg/debian/tmp I: pybuild base:237: /usr/bin/python3.10 setup.py install --root /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' running build_ext running install_lib creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10 creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/File.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/LogisticRegression.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/MarkovModel.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/MaxEntropy.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NaiveBayes.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Seq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqFeature.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqRecord.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/_utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/bgzf.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/kNN.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/pairwise2.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Affy/CelFile.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Affy/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/AlignInfo.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Dialign.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Mafft.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Muscle.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Prank.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Probcons.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BENNER22 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BENNER6 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BENNER74 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM62 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM90 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/DAYHOFF -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/FENG -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/GENETIC -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/GONNET1992 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/HOXD70 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/JOHNSON -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/JONES -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/LEVIN -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/MCLACHLAN -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/MDM78 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/PAM250 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/PAM30 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/PAM70 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/RAO -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/RISLER -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/SCHNEIDER -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/STR -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/TRANS -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/_aligners.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/ClustalIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/EmbossIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/FastaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/Interfaces.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/MafIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/MauveIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/MsfIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/NexusIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/PhylipIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/StockholmIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/AlignIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Alphabet copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Alphabet/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Alphabet creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Application/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/Applications.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/NCBIWWW.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/NCBIXML.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/ParseBlastTable.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/Record.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Blast/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/CAPS/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster/cluster.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster/cluster.h -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster/clustermodule.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/chisq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/codonalignment.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/codonalign/codonseq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Compass/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data/CodonTable.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data/IUPACData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data/SCOPData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Data/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss/Applications.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss/Primer3.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss/PrimerSearch.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Emboss/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/Parser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/common.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/display.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/format.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/link.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/list.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/math.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/para.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/references.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/section.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/XSDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/XSDs creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/Enzyme.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/Prodoc.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/Prosite.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/ScanProsite.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/ExPASy/cellosaurus.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank/Record.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank/Scanner.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/GenBank/utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Geo/Record.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Geo/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/BasicChromosome.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/ColorSpiral.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/Comparative.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/Distribution.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/KGML_vis.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/DynamicProgramming.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/MarkovModel.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/Trainer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/Utilities.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/HMM/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/REST.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/Map/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/mmtfio.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Atom.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Chain.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Dice.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Entity.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/FragmentMapper.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/HSExposure.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/MMCIFParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Model.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/NACCESS.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/NeighborSearch.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/PDBExceptions.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/PDBIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/PDBList.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/PDBParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/PICIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/PSEA.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Polypeptide.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Residue.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/ResidueDepth.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/SASA.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/SCADIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Selection.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Structure.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/StructureAlignment.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/StructureBuilder.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/Superimposer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/ic_data.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/ic_rebuild.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/internal_coords.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/mmcifio.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/parse_pdb_header.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/vectors.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/kdtrees.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Medline/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/alignace.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/clusterbuster.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/mast.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/matrix.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/meme.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/minimal.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/pfm.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/thresholds.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/transfac.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/xms.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar/db.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/_pwm.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/Nexus.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/Nodes.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/StandardData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/Trees.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/cnexus.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR/NOEtools.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/NMR/xpktools.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/Graph.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype/phen_micro.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/phenotype/pm_fitting.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction/PrintFormat.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction/Restriction.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Restriction/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/Cla.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/Des.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/Dom.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/Hie.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/Raf.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/Residues.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SCOP/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlatIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/FastaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_index.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/_base.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/hit.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/hsp.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/query.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/AbiIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/AceIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/FastaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/GckIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/IgIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/Interfaces.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/NibIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/PdbIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/PhdIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/PirIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/QualityIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/SffIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/SnapGeneIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/SwissIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/TabIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/TwoBitIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/UniprotIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/XdnaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/_index.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/_twoBitIO.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/CheckSum.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/ProtParam.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SeqUtils/lcc.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Ace.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Phd.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat/FreqTable.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat/MatrixInfo.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SubsMat/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SwissProt/KeyWList.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/SwissProt/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/TogoWS/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/BaseTree.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/CDAO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/CDAOIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Consensus.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/NeXML.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/NeXMLIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Newick.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/NewickIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/NexusIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PhyloXML.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/TreeConstruction.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/_cdao_owl.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/_io.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/_utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_paml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/baseml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/chi2.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/codeml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/yn00.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniGene/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniProt/GOA.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/UniProt/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise/dnal.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/Wise/psw.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/cpairwise2module.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/BioSeq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/BioSeqDatabase.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/DBUtils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/Loader.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.10/build/BioSQL/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/File.py to File.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Seq.py to Seq.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/_utils.py to _utils.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/bgzf.py to bgzf.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/kNN.py to kNN.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/pairwise2.py to pairwise2.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/Applications.py to Applications.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/Record.py to Record.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/chisq.py to chisq.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/SCOPData.py to SCOPData.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/Record.py to Record.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/utils.py to utils.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/Record.py to Record.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/REST.py to REST.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Atom.py to Atom.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Chain.py to Chain.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Dice.py to Dice.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Entity.py to Entity.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Model.py to Model.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PICIO.py to PICIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Residue.py to Residue.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/SASA.py to SASA.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Selection.py to Selection.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Structure.py to Structure.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/ic_data.py to ic_data.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/vectors.py to vectors.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/alignace.py to alignace.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/mast.py to mast.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/matrix.py to matrix.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/meme.py to meme.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/minimal.py to minimal.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/pfm.py to pfm.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/transfac.py to transfac.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/xms.py to xms.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Des.py to Des.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_index.py to _index.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/TwoBitIO.py to TwoBitIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/_index.py to _index.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/_io.py to _io.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__init__.py to __init__.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/dnal.py to dnal.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/psw.py to psw.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/Loader.py to Loader.cpython-310.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__init__.py to __init__.cpython-310.pyc running install_egg_info Copying biopython.egg-info to /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.10/dist-packages/biopython-1.79.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:237: /usr/bin/python3 setup.py install --root /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' running build_ext running install_lib creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9 creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/File.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/LogisticRegression.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/MarkovModel.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/MaxEntropy.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NaiveBayes.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Seq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqFeature.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqRecord.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/_utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/bgzf.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/kNN.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/pairwise2.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy/CelFile.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/AlignInfo.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Dialign.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Mafft.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Muscle.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Prank.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Probcons.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BENNER22 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BENNER6 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BENNER74 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM62 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM90 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/DAYHOFF -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/FENG -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/GENETIC -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/GONNET1992 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/HOXD70 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/JOHNSON -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/JONES -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/LEVIN -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/MCLACHLAN -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/MDM78 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM250 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM30 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM70 -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/RAO -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/RISLER -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/SCHNEIDER -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/STR -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/TRANS -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/ClustalIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/EmbossIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/FastaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/Interfaces.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/MafIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/MauveIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/MsfIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/NexusIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/PhylipIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/StockholmIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Alphabet copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Alphabet/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Alphabet creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Application/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/Applications.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/NCBIWWW.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/NCBIXML.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/ParseBlastTable.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/Record.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/cluster.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/cluster.h -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/clustermodule.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/chisq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/codonalignment.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/codonseq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/CodonTable.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/IUPACData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/SCOPData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/Applications.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/Primer3.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/PrimerSearch.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/Parser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/common.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/display.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/format.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/link.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/list.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/math.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/para.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/references.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/section.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/XSDs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/XSDs creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/Enzyme.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/Prodoc.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/Prosite.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/ScanProsite.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/cellosaurus.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/Record.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/Scanner.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo/Record.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/BasicChromosome.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/ColorSpiral.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/Comparative.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/Distribution.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/KGML_vis.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/DynamicProgramming.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/MarkovModel.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/Trainer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/Utilities.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/REST.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/mmtfio.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Atom.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Chain.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Dice.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Entity.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/FragmentMapper.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/HSExposure.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/MMCIFParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Model.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/NACCESS.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/NeighborSearch.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBExceptions.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBList.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PICIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PSEA.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Polypeptide.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Residue.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/ResidueDepth.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/SASA.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/SCADIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Selection.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Structure.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/StructureAlignment.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/StructureBuilder.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Superimposer.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/ic_data.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/ic_rebuild.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/internal_coords.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmcifio.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/parse_pdb_header.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/vectors.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/kdtrees.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/alignace.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/clusterbuster.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/mast.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/matrix.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/meme.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/minimal.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/pfm.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/thresholds.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/transfac.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/xms.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar/db.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/_pwm.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/Nexus.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/Nodes.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/StandardData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/Trees.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/cnexus.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/NOEtools.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/xpktools.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/Graph.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/phen_micro.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/pm_fitting.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/PrintFormat.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/Restriction.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Cla.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Des.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Dom.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Hie.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Raf.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Residues.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlatIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/FastaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_index.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/_base.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/hit.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/hsp.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/query.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/AbiIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/AceIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/FastaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/GckIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/IgIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/InsdcIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/Interfaces.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/NibIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/PdbIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/PhdIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/PirIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/QualityIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SffIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SnapGeneIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SwissIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/TabIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/TwoBitIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/UniprotIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/XdnaIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/_index.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/_twoBitIO.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/_twoBitIO.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/CheckSum.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/ProtParam.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/lcc.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Ace.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Phd.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/FreqTable.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/MatrixInfo.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt/KeyWList.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/BaseTree.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/CDAO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/CDAOIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Consensus.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NeXML.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NeXMLIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Newick.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NewickIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NexusIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PhyloXML.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/TreeConstruction.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/_cdao_owl.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/_io.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/_utils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_paml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/baseml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/chi2.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/codeml.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/yn00.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt/GOA.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/dnal.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/psw.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/cpairwise2module.c -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/BioSeq.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/BioSeqDatabase.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/DBUtils.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/Loader.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__init__.py -> /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/File.py to File.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Seq.py to Seq.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/_utils.py to _utils.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/bgzf.py to bgzf.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/kNN.py to kNN.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/pairwise2.py to pairwise2.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/Applications.py to Applications.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/Record.py to Record.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/chisq.py to chisq.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/SCOPData.py to SCOPData.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/Record.py to Record.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/utils.py to utils.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/Record.py to Record.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/REST.py to REST.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Atom.py to Atom.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Chain.py to Chain.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Dice.py to Dice.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Entity.py to Entity.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Model.py to Model.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PICIO.py to PICIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Residue.py to Residue.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/SASA.py to SASA.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Selection.py to Selection.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Structure.py to Structure.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/ic_data.py to ic_data.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/vectors.py to vectors.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/alignace.py to alignace.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/mast.py to mast.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/matrix.py to matrix.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/meme.py to meme.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/minimal.py to minimal.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/pfm.py to pfm.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/transfac.py to transfac.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/xms.py to xms.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Des.py to Des.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_index.py to _index.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/TwoBitIO.py to TwoBitIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/_index.py to _index.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/_io.py to _io.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/dnal.py to dnal.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/psw.py to psw.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/Loader.py to Loader.cpython-39.pyc byte-compiling /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__init__.py to __init__.cpython-39.pyc running install_egg_info Copying biopython.egg-info to /build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/biopython-1.79.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 -ppython3-biopython (grep -a -s -v python3:Depends debian/python3-biopython.substvars; echo "python3:Depends=python3-numpy (>= 1:1.20.0), python3-numpy-abi9") > debian/python3-biopython.substvars.new mv debian/python3-biopython.substvars.new debian/python3-biopython.substvars make[1]: Leaving directory '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg' dh_install -a -O--buildsystem=pybuild install -d debian/python3-biopython//usr/lib/python3.10/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.10/dist-packages/Bio debian/tmp/usr/lib/python3.10/dist-packages/biopython-1.79.egg-info debian/python3-biopython//usr/lib/python3.10/dist-packages/ install -d debian/python3-biopython//usr/lib/python3.9/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.9/dist-packages/Bio debian/tmp/usr/lib/python3.9/dist-packages/biopython-1.79.egg-info debian/python3-biopython//usr/lib/python3.9/dist-packages/ install -d debian/.debhelper/generated/python3-biopython install -d debian/.debhelper/generated/python-biopython-doc install -d debian/.debhelper/generated/python3-biopython-sql dh_installdocs -a -O--buildsystem=pybuild install -d debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIB.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIBUTING.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./DEPRECATED.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./NEWS.rst debian/python3-biopython/usr/share/doc/python3-biopython chmod -R u\+rw,go=rX debian/python3-biopython/usr/share/doc install -p -m0644 debian/README.Debian debian/python3-biopython/usr/share/doc/python3-biopython/README.Debian install -p -m0644 debian/copyright debian/python3-biopython/usr/share/doc/python3-biopython/copyright dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 5.20211114 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': True, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9,3.10 (default=3.9) D: dh_python3 debhelper:129: skipping package: python-biopython-doc D: dh_python3 debhelper:157: source=python-biopython, binary packages=['python3-biopython'] D: dh_python3 dh_python3:183: processing package python3-biopython... D: dh_python3 fs:49: moving files from debian/python3-biopython/usr/lib/python3.9/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 fs:49: moving files from debian/python3-biopython/usr/lib/python3.10/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 fs:265: package python3-biopython details = {'requires.txt': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.79.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.9'), Version('3.10')}, 'ext_no_version': set()} D: dh_python3 depends:118: generating dependencies for package python3-biopython D: dh_python3 pydist:142: trying to find dependency for numpy (python=None) D: dh_python3 depends:282: D={'python3 (>= 3.9~)', 'python3-numpy', 'python3:any', 'python3 (<< 3.11)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild install -d debian/python3-biopython/usr/share/lintian/overrides install -p -m0644 debian/python3-biopython.lintian-overrides debian/python3-biopython/usr/share/lintian/overrides/python3-biopython dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild rm -f debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd ln -s ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild cd debian/python3-biopython chmod a-x usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/CONTRIBUTING.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian usr/share/doc/python3-biopython/changelog.Debian.amd64 gzip -9nf usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/CONTRIBUTING.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian usr/share/doc/python3-biopython/changelog.Debian.amd64 cd '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg' rm -f debian/python3-biopython.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg' dh_fixperms find debian/python3-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name "*.dtd" -exec chmod -x \{\} \; chmod: cannot operate on dangling symlink 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' make[1]: Leaving directory '/build/python-biopython-Ir8JRM/python-biopython-1.79+dfsg' dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -d debian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biopython.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biopython.debug -- debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so objcopy --compress-debug-sections debian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biopython.debug dh_strip -a -O--buildsystem=pybuild install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/36 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/36/2820ba836d9843c32842e83372b779aaef4bf8.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/36/2820ba836d9843c32842e83372b779aaef4bf8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/36/2820ba836d9843c32842e83372b779aaef4bf8.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ff objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ff/5444f3671b02dc984109bae8808720ebc211a6.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ff/5444f3671b02dc984109bae8808720ebc211a6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ff/5444f3671b02dc984109bae8808720ebc211a6.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9e objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9e/65efbc7457fd103739c94366c75086a04159a2.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9e/65efbc7457fd103739c94366c75086a04159a2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9e/65efbc7457fd103739c94366c75086a04159a2.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ce objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ce/ce361094fe40d621b159960190b92e60a13981.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ce/ce361094fe40d621b159960190b92e60a13981.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ce/ce361094fe40d621b159960190b92e60a13981.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/71 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/71/271e10b37d9d06d76a498bce516eff3a756ca0.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/71/271e10b37d9d06d76a498bce516eff3a756ca0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/71/271e10b37d9d06d76a498bce516eff3a756ca0.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9a/340d8e0eee7779f01bb5cdf8ccf250435c0f07.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9a/340d8e0eee7779f01bb5cdf8ccf250435c0f07.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9a/340d8e0eee7779f01bb5cdf8ccf250435c0f07.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/33/21835afd7aea8a97657b08d4113dc4fee639e2.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/33/21835afd7aea8a97657b08d4113dc4fee639e2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/33/21835afd7aea8a97657b08d4113dc4fee639e2.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/8d/f3c892cc7cca3f67b094e0e51684ee4f631b54.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/8d/f3c892cc7cca3f67b094e0e51684ee4f631b54.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/8d/f3c892cc7cca3f67b094e0e51684ee4f631b54.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/75 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/75/e1b8bd5f32789c90914132962d98f2cf47788e.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/75/e1b8bd5f32789c90914132962d98f2cf47788e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/75/e1b8bd5f32789c90914132962d98f2cf47788e.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b1 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b1/e35c38b9e102c230fa146412458625da188417.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b1/e35c38b9e102c230fa146412458625da188417.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b1/e35c38b9e102c230fa146412458625da188417.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f2/4170eb1510072f455e74f296b71fd80c3c8a8e.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f2/4170eb1510072f455e74f296b71fd80c3c8a8e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f2/4170eb1510072f455e74f296b71fd80c3c8a8e.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5a/69b2715145baf73b392c44d7546aa0aebef943.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5a/69b2715145baf73b392c44d7546aa0aebef943.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5a/69b2715145baf73b392c44d7546aa0aebef943.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d7 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d7/b2c4cf1f94c15ac5f12ff0dde400fa216c2d0f.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d7/b2c4cf1f94c15ac5f12ff0dde400fa216c2d0f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d7/b2c4cf1f94c15ac5f12ff0dde400fa216c2d0f.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/1c objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/1c/7752aa6a6e1e916dd211953922cca7e0de3a94.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/1c/7752aa6a6e1e916dd211953922cca7e0de3a94.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/1c/7752aa6a6e1e916dd211953922cca7e0de3a94.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/20 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/20/512126b45d83cd7d8d2a641d48b8b999b499b1.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/20/512126b45d83cd7d8d2a641d48b8b999b499b1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/20/512126b45d83cd7d8d2a641d48b8b999b499b1.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e5 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e5/b46855ea5cac913eff8e0740a483b1862722a9.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e5/b46855ea5cac913eff8e0740a483b1862722a9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e5/b46855ea5cac913eff8e0740a483b1862722a9.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biopython/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biopython/usr/lib/debug install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc ln -s python3-biopython debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc/python3-biopython-dbgsym dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biopython/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -d debian/python3-biopython/DEBIAN dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so dh_installdeb -a -O--buildsystem=pybuild printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/postinst cat debian/python3-biopython.postinst.debhelper >> debian/python3-biopython/DEBIAN/postinst chmod 0755 -- debian/python3-biopython/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/prerm cat debian/python3-biopython.prerm.debhelper >> debian/python3-biopython/DEBIAN/prerm chmod 0755 -- debian/python3-biopython/DEBIAN/prerm dh_gencontrol -a -O--buildsystem=pybuild echo misc:Depends= >> debian/python3-biopython.substvars echo misc:Pre-Depends= >> debian/python3-biopython.substvars install -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/.debhelper/python3-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-biopython-dbgsym "-DDepends=python3-biopython (= \${binary:Version})" "-DDescription=debug symbols for python3-biopython" "-DBuild-Ids=1c7752aa6a6e1e916dd211953922cca7e0de3a94 20512126b45d83cd7d8d2a641d48b8b999b499b1 3321835afd7aea8a97657b08d4113dc4fee639e2 362820ba836d9843c32842e83372b779aaef4bf8 5a69b2715145baf73b392c44d7546aa0aebef943 71271e10b37d9d06d76a498bce516eff3a756ca0 75e1b8bd5f32789c90914132962d98f2cf47788e 8df3c892cc7cca3f67b094e0e51684ee4f631b54 9a340d8e0eee7779f01bb5cdf8ccf250435c0f07 9e65efbc7457fd103739c94366c75086a04159a2 b1e35c38b9e102c230fa146412458625da188417 cece361094fe40d621b159960190b92e60a13981 d7b2c4cf1f94c15ac5f12ff0dde400fa216c2d0f e5b46855ea5cac913eff8e0740a483b1862722a9 f24170eb1510072f455e74f296b71fd80c3c8a8e ff5444f3671b02dc984109bae8808720ebc211a6" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/python3-biopython dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-biopython/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild cd debian/python3-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-biopython/DEBIAN/md5sums cd debian/.debhelper/python3-biopython/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biopython .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-biopython/dbgsym-root .. dpkg-deb: building package 'python3-biopython-dbgsym' in '../python3-biopython-dbgsym_1.79+dfsg-1+b1_amd64.deb'. dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.79+dfsg-1+b1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../python-biopython_1.79+dfsg-1+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/python-biopython-Ir8JRM /tmp/python-biopython-1.79+dfsg-1+b16r86we3k I: cleaning package lists and apt cache... W: deleting files in /tmp: texfonts I: removing tempdir /tmp/mmdebstrap.OZViho3kVF... I: success in 1139.9921 seconds md5: python3-biopython-dbgsym_1.79+dfsg-1+b1_amd64.deb: OK md5: python3-biopython_1.79+dfsg-1+b1_amd64.deb: OK sha1: python3-biopython-dbgsym_1.79+dfsg-1+b1_amd64.deb: OK sha1: python3-biopython_1.79+dfsg-1+b1_amd64.deb: OK sha256: python3-biopython-dbgsym_1.79+dfsg-1+b1_amd64.deb: OK sha256: python3-biopython_1.79+dfsg-1+b1_amd64.deb: OK Checksums: OK