Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/python-biopython/python-biopython_1.78+dfsg-4_all.buildinfo
Use metasnap for getting required timestamps
New buildinfo file: /tmp/python-biopython-1.78+dfsg-4rg_eyy6w/python-biopython_1.78+dfsg-4_all.buildinfo
Get source package info: python-biopython=1.78+dfsg-4
Source URL: http://snapshot.notset.fr/mr/package/python-biopython/1.78+dfsg-4/srcfiles?fileinfo=1
env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.69-11.1 automake=1:1.16.3-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc3-1 binutils=2.35.1-3 binutils-common=2.35.1-3 binutils-x86-64-linux-gnu=2.35.1-3 bsdextrautils=2.36.1-2 bsdutils=1:2.36.1-2 build-essential=12.8 bwa=0.7.17-5 bzip2=1.0.8-4 ca-certificates=20200601 clustalo=1.2.4-7 clustalw=2.1+lgpl-7 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-23 dash=0.5.11+git20200708+dd9ef66-2 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.9.0-1 dialign=2.2.1-11 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dssp=4.0.0-1 dwz=0.13+20201015-2 emboss=6.6.0+dfsg-8 emboss-data=6.6.0+dfsg-8 emboss-lib=6.6.0+dfsg-8 fasttree=2.1.11-1 file=1:5.39-3 findutils=4.7.0+git20201010-2 flex=2.6.4-8 fontconfig-config=2.13.1-4.2 fonts-lmodern=2.004.5-6 fonts-lyx=2.3.6-1 fonts-urw-base35=20200910-1 g++=4:10.2.0-1 g++-10=10.2.0-23 gcc=4:10.2.0-1 gcc-10=10.2.0-23 gcc-10-base=10.2.0-23 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 ghostscript=9.53.3~dfsg-5 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hevea=2.34-2+b1 hostname=3.23 ibverbs-providers=32.0-1+b1 init-system-helpers=1.59 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libargtable2-0=13-1+b1 libasan6=10.2.0-23 libatomic1=10.2.0-23 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libavahi-client3=0.8-3 libavahi-common-data=0.8-3 libavahi-common3=0.8-3 libbinutils=2.35.1-3 libblas3=3.9.0-3 libblkid1=2.36.1-2 libboost-iostreams1.71.0=1.71.0-7+b1 libboost-program-options1.71.0=1.71.0-7+b1 libbrotli1=1.0.9-2+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-5 libc-dev-bin=2.31-5 libc6=2.31-5 libc6-dev=2.31-5 libcairo2=1.16.0-4 libcap-ng0=0.7.9-2.2+b1 libcbor0=0.5.0+dfsg-2 libcc1-0=10.2.0-23 libcifpp1=1.0.0-3 libcom-err2=1.45.6-1 libcommons-logging-java=1.2-2 libcommons-parent-java=43-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-3 libctf0=2.35.1-3 libcups2=2.3.3op1-3 libcurl3-gnutls=7.72.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.20-1 libdebconfclient0=0.255 libdebhelper-perl=13.2.1 libdeflate0=1.6-1 libdpkg-perl=1.20.5 libedit2=3.1-20191231-1 libelf1=0.182-1 libevent-core-2.1-7=2.1.12-stable-1 libevent-pthreads-2.1-7=2.1.12-stable-1 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libfabric1=1.11.0-2 libffi7=3.3-5 libfido2-1=1.5.0-2 libfile-stripnondeterminism-perl=1.9.0-1 libfontbox-java=1:1.8.16-2 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.2+dfsg-4 libgcc-10-dev=10.2.0-23 libgcc-s1=10.2.0-23 libgcrypt20=1.8.7-2 libgd3=2.3.0-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran5=10.2.0-23 libglib2.0-0=2.66.3-2 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.6.15-4 libgomp1=10.2.0-23 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgs9=9.53.3~dfsg-5 libgs9-common=9.53.3~dfsg-5 libgssapi-krb5-2=1.18.3-4 libharfbuzz0b=2.6.7-1 libhogweed6=3.6-2 libhpdf-2.3.0=2.3.0+dfsg-1+b1 libhts3=1.11-2 libhwloc-plugins=2.4.0+dfsg-2 libhwloc15=2.4.0+dfsg-2 libibverbs1=32.0-1+b1 libice6=2:1.0.10-1 libicu67=67.1-4 libidn11=1.33-2.4 libidn2-0=2.3.0-4 libijs-0.35=0.35-15 libimagequant0=2.12.2-1.1 libisl23=0.23-1 libitm1=10.2.0-23 libjbig0=2.1-3.1+b2 libjbig2dec0=0.19-1 libjpeg62-turbo=1:2.0.5-1.1 libjs-jquery=3.5.1+dfsg+~3.5.4-3 libjs-jquery-ui=1.12.1+dfsg-7 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkpathsea6=2020.20200327.54578-5 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack3=3.9.0-3 liblbfgsb0=3.0+dfsg.3-9 liblcms2-2=2.9-4+b1 libldap-2.4-2=2.4.56+dfsg-1 liblmdb0=0.9.24-1 liblsan0=10.2.0-23 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmariadb3=1:10.5.8-3 libmbedcrypto3=2.16.5-1 libmbedtls12=2.16.5-1 libmbedx509-0=2.16.5-1 libmount1=2.36.1-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-1 libncursesw6=6.2+20201114-1 libnetpbm10=2:10.0-15.3+b2 libnettle8=3.6-2 libnghttp2-14=1.42.0-1 libnl-3-200=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma1=2.0.12-1+b1 libopenjp2-7=2.3.1-1 libopenmpi3=4.0.5-7 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpciaccess0=0.16-1 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libpdfbox-java=1:1.8.16-2 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libpixman-1-0=0.40.0-1 libpmix2=3.2.2~rc1-1 libpng16-16=1.6.37-3 libpq5=13.1-1+b1 libpsl5=0.21.0-1.1 libpsm-infinipath1=3.3+20.604758e7-6+b1 libpsm2-2=11.2.185-1 libptexenc1=2020.20200327.54578-5 libpython3-all-dev=3.9.0-4 libpython3-dev=3.9.0-4 libpython3-stdlib=3.9.0-4 libpython3.8-minimal=3.8.6-1 libpython3.8-stdlib=3.8.6-1 libpython3.9=3.9.1~rc1-2 libpython3.9-dev=3.9.1~rc1-2 libpython3.9-minimal=3.9.1~rc1-2 libpython3.9-stdlib=3.9.1~rc1-2 libquadmath0=10.2.0-23 librdmacm1=32.0-1+b1 libreadline8=8.1~rc3-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsemanage-common=3.1-1 libsemanage1=3.1-1+b1 libsepol1=3.1-1 libsigsegv2=2.12-2 libsm6=2:1.2.3-1 libsmartcols1=2.36.1-2 libsqlite3-0=3.34.0-1 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-23 libstdc++6=10.2.0-23 libsub-override-perl=0.09-2 libsynctex2=2020.20200327.54578-5 libsystemd0=246.6-5 libtasn1-6=4.16.0-2 libteckit0=2.5.10+ds1-3 libtexlua53=2020.20200327.54578-5 libtexluajit2=2020.20200327.54578-5 libtiff5=4.1.0+git191117-2 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.0-23 libubsan1=10.2.0-23 libuchardet0=0.0.7-1 libucx0=1.9.0~rc1-2 libudev1=246.6-5 libunistring2=0.9.10-4 libuuid1=2.36.1-2 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libx11-6=2:1.6.12-1 libx11-data=2:1.6.12-1 libxau6=1:1.0.8-1+b2 libxaw7=2:1.0.13-1+b2 libxcb-render0=1.14-2 libxcb-shm0=1.14-2 libxcb1=1.14-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxi6=2:1.7.10-1 libxml2=2.9.10+dfsg-6.3 libxmu6=2:1.1.2-2+b3 libxnvctrl0=450.80.02-1+b1 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxt6=1:1.2.0-1 libzstd1=1.4.5+dfsg-4 libzzip-0-13=0.13.62-3.2 linux-libc-dev=5.9.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mafft=7.471-1 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mariadb-common=1:10.5.8-3 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 muscle=1:3.8.1551-2 mysql-common=5.8+1.0.6 ncbi-blast+=2.10.1+ds-1 ncbi-data=6.1.20170106+dfsg1-9 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 netpbm=2:10.0-15.3+b2 node-jquery=3.5.1+dfsg+~3.5.4-3 ocl-icd-libopencl1=2.2.13-1 openmpi-bin=4.0.5-7 openmpi-common=4.0.5-7 openssh-client=1:8.4p1-3 openssl=1.1.1h-1 passwd=1:4.8.1-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 phylip=1:3.697+dfsg-2 phyml=3:3.3.20200621-1 po-debconf=1.0.21 poppler-data=0.4.10-1 prank=0.0.170427+dfsg-3 preview-latex-style=12.2-1 probcons=1.12-13 python-matplotlib-data=3.3.2-2 python3=3.9.0-4 python3-all=3.9.0-4 python3-all-dev=3.9.0-4 python3-certifi=2020.6.20-1 python3-cycler=0.10.0-3 python3-dateutil=2.8.1-4 python3-decorator=4.4.2-2 python3-dev=3.9.0-4 python3-distutils=3.8.6-1 python3-isodate=0.6.0-2 python3-kiwisolver=1.3.1-1 python3-lib2to3=3.8.6-1 python3-linecache2=1.0.0-4 python3-matplotlib=3.3.2-2 python3-minimal=3.9.0-4 python3-mmtf=1.1.2-3 python3-msgpack=1.0.0-6 python3-mysqldb=1.4.4-2+b2 python3-networkx=2.5+ds-2 python3-numpy=1:1.19.4-1 python3-pil=8.0.1-1 python3-pkg-resources=50.3.0-1 python3-psycopg2=2.8.5-1+b1 python3-pygments=2.7.1+dfsg-1 python3-pyparsing=2.4.7-1 python3-rdflib=4.2.2-5 python3-renderpm=3.5.55-1 python3-reportlab=3.5.55-1 python3-reportlab-accel=3.5.55-1 python3-scipy=1.5.4-1 python3-setuptools=50.3.0-1 python3-six=1.15.0-2 python3-traceback2=1.4.0-6 python3-unittest2=1.1.0-7 python3.8=3.8.6-1 python3.8-minimal=3.8.6-1 python3.9=3.9.1~rc1-2 python3.9-dev=3.9.1~rc1-2 python3.9-minimal=3.9.1~rc1-2 raxml=8.2.12+dfsg-6+b1 readline-common=8.1~rc3-1 samtools=1.11-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 t-coffee=13.41.0.28bdc39+dfsg-4 t1utils=1.41-4 tar=1.32+dfsg-1 tex-common=6.15 texlive-base=2020.20201203-2 texlive-binaries=2020.20200327.54578-5 texlive-fonts-recommended=2020.20201203-2 texlive-latex-base=2020.20201203-2 texlive-latex-extra=2020.20201129-1 texlive-latex-recommended=2020.20201203-2 texlive-pictures=2020.20201203-2 ttf-bitstream-vera=1.10-8 tzdata=2020d-1 ucf=3.0043 util-linux=2.36.1-2 wise=2.4.1-23 wise-data=2.4.1-23 x11-common=1:7.7+21 xdg-utils=1.1.3-2 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main
deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main
deb http://snapshot.notset.fr/archive/debian/20201208T030340Z/ unstable main
deb http://snapshot.notset.fr/archive/debian/20201202T205335Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d python-biopython=1.78+dfsg-4 && mkdir -p /build/python-biopython-nbTMLV && dpkg-source --no-check -x /*.dsc /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg && chown -R builduser:builduser /build/python-biopython-nbTMLV" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607207560" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/python-biopython-nbTMLV /tmp/python-biopython-1.78+dfsg-4rg_eyy6w bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable main
I: automatically chosen mode: root
I: chroot architecture amd64 is equal to the host's architecture
I: automatically chosen format: tar
I: using /tmp/mmdebstrap.ucTkh7ZhCs as tempdir
I: running apt-get update...
I: downloading packages with apt...
I: extracting archives...
I: installing essential packages...
I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.ucTkh7ZhCs
Reading package lists...
Building dependency tree...
util-linux is already the newest version (2.36.1-2).
The following NEW packages will be installed:
  fakeroot libfakeroot
0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
Need to get 134 kB of archives.
After this operation, 397 kB of additional disk space will be used.
Get:1 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB]
Get:2 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 134 kB in 0s (880 kB/s)
Selecting previously unselected package libfakeroot:amd64.
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(Reading database ... 4614 files and directories currently installed.)
Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ...
Unpacking libfakeroot:amd64 (1.25.3-1.1) ...
Selecting previously unselected package fakeroot.
Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ...
Unpacking fakeroot (1.25.3-1.1) ...
Setting up libfakeroot:amd64 (1.25.3-1.1) ...
Setting up fakeroot (1.25.3-1.1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Processing triggers for libc-bin (2.31-5) ...
I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/
I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main
deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main
deb http://snapshot.notset.fr/archive/debian/20201208T030340Z/ unstable main
deb http://snapshot.notset.fr/archive/debian/20201202T205335Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.ucTkh7ZhCs
Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB]
Get:2 http://snapshot.notset.fr/archive/debian/20201208T030340Z unstable InRelease [153 kB]
Hit:3 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable InRelease
Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources
Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages
Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources
Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages
Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources
Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages
Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB]
Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB]
Ign:6 http://snapshot.notset.fr/archive/debian/20201208T030340Z unstable/main amd64 Packages
Ign:6 http://snapshot.notset.fr/archive/debian/20201208T030340Z unstable/main amd64 Packages
Ign:6 http://snapshot.notset.fr/archive/debian/20201208T030340Z unstable/main amd64 Packages
Get:6 http://snapshot.notset.fr/archive/debian/20201208T030340Z unstable/main amd64 Packages [11.6 MB]
Fetched 34.3 MB in 30s (1137 kB/s)
Reading package lists...
I: installing remaining packages inside the chroot...
I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.ucTkh7ZhCs
I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d python-biopython=1.78+dfsg-4 && mkdir -p /build/python-biopython-nbTMLV && dpkg-source --no-check -x /*.dsc /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg && chown -R builduser:builduser /build/python-biopython-nbTMLV"' exec /tmp/mmdebstrap.ucTkh7ZhCs
Reading package lists...
NOTICE: 'python-biopython' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-biopython.git
Please use:
git clone https://salsa.debian.org/med-team/python-biopython.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 9829 kB of source archives.
Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-biopython 1.78+dfsg-4 (dsc) [3246 B]
Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-biopython 1.78+dfsg-4 (tar) [9808 kB]
Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-biopython 1.78+dfsg-4 (diff) [17.9 kB]
Fetched 9829 kB in 8s (1249 kB/s)
Download complete and in download only mode
W: Download is performed unsandboxed as root as file 'python-biopython_1.78+dfsg-4.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied)
dpkg-source: info: extracting python-biopython in /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg
dpkg-source: info: unpacking python-biopython_1.78+dfsg.orig.tar.xz
dpkg-source: info: unpacking python-biopython_1.78+dfsg-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying remove_mathml-qname.patch
dpkg-source: info: applying privacy_breach.patch
dpkg-source: info: applying privacy_breach_ie9.patch
dpkg-source: info: applying blastdbv4-impl.patch
dpkg-source: info: applying fix-use-of-unversioned-python.patch
dpkg-source: info: applying stabilize-phyml-test.patch
dpkg-source: info: applying spelling-error-in-binaries.patch
dpkg-source: info: applying reproduciblebuild.patch
dpkg-source: info: applying mkdssp4.path
I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607207560" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.ucTkh7ZhCs
dpkg-buildpackage: info: source package python-biopython
dpkg-buildpackage: info: source version 1.78+dfsg-4
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <etienne.mollier@mailoo.org>
 dpkg-source --before-build .
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg'
dh_auto_clean
	install -d /build/python-biopython-nbTMLV/python-biopython-1.78\+dfsg/debian/.debhelper/generated/_source/home
	pybuild --clean -i python{version} -p 3.9
I: pybuild base:232: python3.9 setup.py clean 
running clean
removing '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
	rm -rf .pybuild/
	find . -name \*.pyc -exec rm {} \;
cd Doc && make distclean
make[2]: Entering directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/Doc'
( for f in  ; do make clean -C $f ; done )
rm -f Tutorial.aux
rm -f Tutorial.toc
rm -f Tutorial.log
rm -f Tutorial.out
rm -f Tutorial.haux
rm -f Tutorial.htoc
rm -f biopdb_faq.aux
rm -f biopdb_faq.log
rm -f biopdb_faq.out
rm -f Tutorial/*.aux
( for f in  ; do make distclean -C $f ; done )
rm -f version.sh
rm -f biopdb_faq.pdf
rm -f Tutorial.pdf
rm -f Tutorial.html
rm -f Tutorial.txt
rm -f *_motif.gif #output from hacha
make[2]: Leaving directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/Doc'
rm -f Doc/install/Installation.pdf
rm -f Doc/install/Installation.txt
rm -f Doc/install/Installation.html
rm -f Doc/Tutorial.pdf Doc/biopdb_faq.pdf
rm -f Doc/Tutorial/*.aux
find Doc -name "*.pygtex" -o -name "*.pygstyle" -delete
rm -rf biopython.egg-info
rm -rf .pybuild
if [ -d Tests_avoid ] ; then \
    mv Tests_avoid/* Tests ; \
    rmdir Tests_avoid ; \
fi
rm -rf debian/tmp_tests
make[1]: Leaving directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
	rm -f debian/debhelper-build-stamp
	rm -rf debian/.debhelper/
	rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars debian/files
	rm -fr -- debian/python3-biopython/ debian/tmp/ debian/python-biopython-doc/ debian/python3-biopython-sql/
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 debian/rules binary-indep
dh binary-indep --with python3 --buildsystem=pybuild
   dh_update_autotools_config -i -O--buildsystem=pybuild
   dh_autoreconf -i -O--buildsystem=pybuild
   dh_auto_configure -i -O--buildsystem=pybuild
	install -d /build/python-biopython-nbTMLV/python-biopython-1.78\+dfsg/debian/.debhelper/generated/_source/home
	pybuild --configure -i python{version} -p 3.9
I: pybuild base:232: python3.9 setup.py config 
running config
   debian/rules override_dh_auto_build
make[1]: Entering directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg'
dh_auto_build
	pybuild --build -i python{version} -p 3.9
I: pybuild base:232: /usr/bin/python3 setup.py build 
running build
running build_py
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio
copying Bio/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio
copying Bio/MarkovModel.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio
copying Bio/SeqRecord.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio
copying Bio/NaiveBayes.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio
copying Bio/Seq.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio
copying Bio/bgzf.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio
copying Bio/LogisticRegression.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio
copying Bio/_utils.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio
copying Bio/SeqFeature.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio
copying Bio/pairwise2.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio
copying Bio/File.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio
copying Bio/MaxEntropy.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio
copying Bio/kNN.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy
copying Bio/Affy/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy
copying Bio/Affy/CelFile.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align
copying Bio/Align/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align
copying Bio/Align/AlignInfo.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications
copying Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications
copying Bio/Align/Applications/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications
copying Bio/Align/Applications/_Mafft.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications
copying Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications
copying Bio/Align/Applications/_Probcons.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications
copying Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications
copying Bio/Align/Applications/_Muscle.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications
copying Bio/Align/Applications/_Prank.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications
copying Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications
copying Bio/Align/Applications/_Dialign.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices
copying Bio/Align/substitution_matrices/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO
copying Bio/AlignIO/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO
copying Bio/AlignIO/FastaIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO
copying Bio/AlignIO/StockholmIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO
copying Bio/AlignIO/ClustalIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO
copying Bio/AlignIO/MauveIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO
copying Bio/AlignIO/MafIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO
copying Bio/AlignIO/Interfaces.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO
copying Bio/AlignIO/NexusIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO
copying Bio/AlignIO/PhylipIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO
copying Bio/AlignIO/MsfIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO
copying Bio/AlignIO/EmbossIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Alphabet
copying Bio/Alphabet/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Alphabet
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Application
copying Bio/Application/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Application
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast
copying Bio/Blast/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast
copying Bio/Blast/NCBIWWW.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast
copying Bio/Blast/Applications.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast
copying Bio/Blast/Record.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast
copying Bio/Blast/NCBIXML.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast
copying Bio/Blast/ParseBlastTable.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS
copying Bio/CAPS/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster
copying Bio/Cluster/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign
copying Bio/codonalign/codonalignment.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign
copying Bio/codonalign/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign
copying Bio/codonalign/codonseq.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign
copying Bio/codonalign/chisq.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass
copying Bio/Compass/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Crystal
copying Bio/Crystal/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Crystal
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data
copying Bio/Data/IUPACData.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data
copying Bio/Data/SCOPData.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data
copying Bio/Data/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data
copying Bio/Data/CodonTable.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss
copying Bio/Emboss/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss
copying Bio/Emboss/Applications.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss
copying Bio/Emboss/PrimerSearch.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss
copying Bio/Emboss/Primer3.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez
copying Bio/Entrez/Parser.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez
copying Bio/Entrez/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy
copying Bio/ExPASy/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy
copying Bio/ExPASy/Prodoc.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy
copying Bio/ExPASy/ScanProsite.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy
copying Bio/ExPASy/Enzyme.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy
copying Bio/ExPASy/Prosite.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy
copying Bio/ExPASy/cellosaurus.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP
copying Bio/FSSP/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP
copying Bio/FSSP/fssp_rec.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP
copying Bio/FSSP/FSSPTools.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank
copying Bio/GenBank/Scanner.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank
copying Bio/GenBank/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank
copying Bio/GenBank/Record.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank
copying Bio/GenBank/utils.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank
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copying Bio/Phylo/PAML/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML
copying Bio/Phylo/PAML/yn00.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML
copying Bio/Phylo/PAML/chi2.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML
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copying Bio/Phylo/PAML/baseml.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML
copying Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML
copying Bio/Phylo/PAML/_paml.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt
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copying Bio/UniProt/GOA.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise
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copying Bio/Wise/psw.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise
copying Bio/Wise/dnal.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL
copying BioSQL/DBUtils.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL
copying BioSQL/Loader.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL
copying BioSQL/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL
copying BioSQL/BioSeq.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL
copying BioSQL/BioSeqDatabase.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL
running egg_info
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data
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copying Bio/Align/substitution_matrices/data/BENNER6 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BENNER74 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data
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copying Bio/Align/substitution_matrices/data/HOXD70 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data
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copying Bio/Align/substitution_matrices/data/MDM78 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data
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copying Bio/Align/substitution_matrices/data/PAM30 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data
copying Bio/Align/substitution_matrices/data/PAM70 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
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copying Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/link.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/list.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/math.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/para.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/references.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/section.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs
copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs
copying Bio/motifs/_pwm.c -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs
copying Bio/Nexus/cnexus.c -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus
copying Bio/PDB/kdtrees.c -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB
copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer
running build_ext
building 'Bio.Align._aligners' extension
creating build
creating build/temp.linux-x86_64-3.9
creating build/temp.linux-x86_64-3.9/Bio
creating build/temp.linux-x86_64-3.9/Bio/Align
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Align/_aligners.c -o build/temp.linux-x86_64-3.9/Bio/Align/_aligners.o
x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/Align/_aligners.o -o /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so
building 'Bio.cpairwise2' extension
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-3.9/Bio/cpairwise2module.o
Bio/cpairwise2module.c: In function ‘_get_match_score’:
Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations]
   60 |     if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist)))
      |     ^~
In file included from /usr/include/python3.9/Python.h:145,
                 from Bio/cpairwise2module.c:16:
/usr/include/python3.9/ceval.h:17:43: note: declared here
   17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords(
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/cpairwise2module.o -o /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so
building 'Bio.Nexus.cnexus' extension
creating build/temp.linux-x86_64-3.9/Bio/Nexus
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-3.9/Bio/Nexus/cnexus.o
x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/Nexus/cnexus.o -o /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so
building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension
creating build/temp.linux-x86_64-3.9/Bio/PDB
creating build/temp.linux-x86_64-3.9/Bio/PDB/QCPSuperimposer
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-x86_64-3.9/Bio/PDB/QCPSuperimposer/qcprotmodule.o
x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so
building 'Bio.motifs._pwm' extension
creating build/temp.linux-x86_64-3.9/Bio/motifs
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-3.9/Bio/motifs/_pwm.o
x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/motifs/_pwm.o -o /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so
building 'Bio.Cluster._cluster' extension
creating build/temp.linux-x86_64-3.9/Bio/Cluster
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-3.9/Bio/Cluster/cluster.o
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-3.9/Bio/Cluster/clustermodule.o
x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/Cluster/cluster.o build/temp.linux-x86_64-3.9/Bio/Cluster/clustermodule.o -o /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so
building 'Bio.PDB.kdtrees' extension
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-3.9/Bio/PDB/kdtrees.o
x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/PDB/kdtrees.o -o /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so
cd Doc && make
make[2]: Entering directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/Doc'
sed "s/\@VERSION\@/1.78/g" version.in > version.sh
chmod +x version.sh
hevea -exec ./version.sh -exec xxdate.exe -fix Tutorial.tex
Exclude comment 'comment'
./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009'
./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000'
./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a'
./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'dehoon2004'
./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'pritchard2006'
./Tutorial/chapter_introduction.tex:99: Warning: Undefined citation: 'talevich2012'
./Tutorial/chapter_introduction.tex:100: Warning: Undefined citation: 'cock2010'
./Tutorial/chapter_introduction.tex:186: Warning: Undefined label: 'sec:seq-comparison'
./Tutorial/chapter_introduction.tex:192: Warning: Undefined label: 'sec:appendix-handles'
./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode
./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook'
./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced'
./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects'
./Tutorial/chapter_quick_start.tex:45: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:sequence-parsing'
./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:entrez'
./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:uniprot'
./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:align_clustal'
./Tutorial/chapter_quick_start.tex:72: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_quick_start.tex:79: Warning: Undefined label: 'sec:connecting-with-biological-databases'
./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:align'
./Tutorial/chapter_quick_start.tex:150: Warning: Undefined label: 'chapter:cookbook'
./Tutorial/chapter_quick_start.tex:158: Warning: Undefined label: 'chapter:entrez'
./Tutorial/chapter_quick_start.tex:159: Warning: Undefined label: 'chapter:uniprot'
./Tutorial/chapter_quick_start.tex:169: Warning: Undefined label: 'chapter:cookbook'
./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode
./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot'
./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined label: 'sec:mutable-seq'
./Tutorial/chapter_seq_objects.tex:154: Warning: Undefined label: 'sec:SeqRecord-format'
./Tutorial/chapter_seq_objects.tex:156: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_seq_objects.tex:268: Warning: Undefined label: 'sec:SeqIO-reverse-complement'
./Tutorial/chapter_seq_objects.tex:343: Warning: Undefined label: 'sec:seq-module-functions'
./Tutorial/chapter_seq_objects.tex:457: Warning: Undefined label: 'sec:SeqIO-translate'
./Tutorial/chapter_seq_objects.tex:463: Warning: Undefined label: 'sec:seq-module-functions'
./Tutorial/chapter_seq_objects.tex:586: Warning: Undefined label: 'sec:seq-to-string'
./Tutorial/chapter_seq_objects.tex:655: Warning: Undefined label: 'sec:seq-to-string'
./Tutorial/chapter_seq_objects.tex:713: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode
./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seq_objects'
./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seq_objects'
./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example'
./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features'
./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined label: 'chapter:quick_start'
./Tutorial/chapter_seq_annot.tex:133: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_seq_annot.tex:276: Warning: Undefined label: 'sec:seq_features'
./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode
./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined label: 'sec:locations'
./Tutorial/chapter_seq_annot.tex:293: Warning: Undefined label: 'sec:locations'
./Tutorial/chapter_seq_annot.tex:525: Warning: Undefined label: 'sec:locations'
./Tutorial/chapter_seq_annot.tex:627: Warning: Undefined label: 'sec:seq-comparison'
./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined label: 'sec:locations'
./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO'
./Tutorial/chapter_seq_annot.tex:809: Warning: Undefined label: 'sec:SeqRecord-format'
./Tutorial/chapter_seq_annot.tex:817: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer'
./Tutorial/chapter_seq_annot.tex:818: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor'
./Tutorial/chapter_seq_annot.tex:831: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start'
./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot'
./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_annot'
./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_objects'
./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq'
./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online'
./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles'
./Tutorial/chapter_seqio.tex:44: Warning: Undefined label: 'sec:sequence-parsing'
./Tutorial/chapter_seqio.tex:69: Warning: Undefined label: 'sec:sequence-parsing-plus-pylab'
./Tutorial/chapter_seqio.tex:151: Warning: Undefined label: 'chapter:seq_annot'
./Tutorial/chapter_seqio.tex:310: Warning: Undefined label: 'sec:writing-sequence-files'
./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode
./Tutorial/chapter_seqio.tex:333: Warning: Undefined label: 'sec:appendix-handles'
./Tutorial/chapter_seqio.tex:401: Warning: Undefined label: 'sec:SeqIO-index-bgzf'
./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode
./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode
./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode
./Tutorial/chapter_seqio.tex:417: Warning: Undefined label: 'sec:efetch'
./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'chapter:entrez'
./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'sec:entrez-guidelines'
./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode
./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode
./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode
./Tutorial/chapter_seqio.tex:512: Warning: Undefined label: 'chapter:uniprot'
./Tutorial/chapter_seqio.tex:548: Warning: Undefined label: 'sec:seqio_todict'
./Tutorial/chapter_seqio.tex:554: Warning: Undefined label: 'sec:SeqIO-index'
./Tutorial/chapter_seqio.tex:558: Warning: Undefined label: 'sec:SeqIO-index-db'
./Tutorial/chapter_seqio.tex:561: Warning: Undefined label: 'sec:SeqIO-indexing-discussion'
./Tutorial/chapter_seqio.tex:564: Warning: '_' occurring outside math mode
./Tutorial/chapter_seqio.tex:571: Warning: Undefined label: 'sec:SeqIO-index'
./Tutorial/chapter_seqio.tex:645: Warning: Undefined label: 'sec:fasta-parsing'
./Tutorial/chapter_seqio.tex:766: Warning: Undefined label: 'sec:fastq-indexing'
./Tutorial/chapter_seqio.tex:787: Warning: Undefined label: 'sec:seqio-todict-functionkey'
./Tutorial/chapter_seqio.tex:849: Warning: Undefined label: 'sec:SeqIO-sort'
./Tutorial/chapter_seqio.tex:931: Warning: Undefined label: 'sec:seqio-index-getraw'
./Tutorial/chapter_seqio.tex:1172: Warning: Undefined label: 'sec:seqio-index-getraw'
./Tutorial/chapter_seqio.tex:1216: Warning: Undefined label: 'sec:SeqIO-fastq-conversion'
./Tutorial/chapter_seqio.tex:1216: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion'
./Tutorial/chapter_seqio.tex:1231: Warning: Undefined label: 'sec:seq-reverse-complement'
./Tutorial/chapter_seqio.tex:1241: Warning: Undefined label: 'sec:SeqRecord-reverse-complement'
./Tutorial/chapter_seqio.tex:1283: Warning: Undefined label: 'sec:SeqIO-translate'
./Tutorial/chapter_seqio.tex:1303: Warning: Undefined label: 'sec:SeqRecord-format'
./Tutorial/chapter_seqio.tex:1384: Warning: Undefined label: 'chapter:cookbook'
./Tutorial/chapter_align.tex:31: Warning: Undefined label: 'sec:appendix-handles'
./Tutorial/chapter_align.tex:35: Warning: Undefined label: 'sec:AlignIO-count-argument'
./Tutorial/chapter_align.tex:113: Warning: Undefined label: 'sec:alignment-format'
./Tutorial/chapter_align.tex:444: Warning: Undefined label: 'sec:SeqIO-conversion'
./Tutorial/chapter_align.tex:633: Warning: Undefined label: 'sec:SeqRecord-format'
./Tutorial/chapter_align.tex:813: Warning: Undefined label: 'sec:SeqRecord-addition'
./Tutorial/chapter_align.tex:892: Warning: Undefined label: 'sec:subs_mat_ex'
./Tutorial/chapter_align.tex:915: Warning: Undefined label: 'sec:pairwise'
./Tutorial/chapter_align.tex:919: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_align.tex:945: Warning: Undefined label: 'sec:emboss-needle-water'
./Tutorial/chapter_align.tex:953: Warning: '_' occurring outside math mode
./Tutorial/chapter_align.tex:1091: Warning: Undefined label: 'chapter:phylo'
./Tutorial/chapter_align.tex:1312: Warning: Undefined label: 'sec:appendix-handles'
./Tutorial/chapter_align.tex:1684: Warning: Undefined citation: 'durbin1998'
./Tutorial/chapter_align.tex:1697: Warning: Undefined label: 'sec:pairwise-aligner'
./Tutorial/chapter_align.tex:1770: Warning: Undefined citation: 'waterman1987'
./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-substitution-scores'
./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-affine-gapscores'
./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-general-gapscores'
./Tutorial/chapter_align.tex:1800: Warning: Undefined label: 'sec:pairwise-basic'
./Tutorial/chapter_align.tex:1803: Warning: Undefined label: 'sec:pairwise-affine-gapscores'
./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-general-gapscores'
./Tutorial/chapter_align.tex:1830: Warning: Undefined citation: 'altschul1990'
./Tutorial/chapter_align.tex:1830: Warning: Undefined label: 'sec:pairwise-affine-gapscores'
./Tutorial/chapter_align.tex:1858: Warning: Undefined citation: 'altschul1990'
./Tutorial/chapter_align.tex:1962: Warning: Undefined label: 'table:align-meta-attributes'
./Tutorial/chapter_align.tex:2052: Warning: Undefined label: 'sec:pairwise-examples'
./Tutorial/chapter_align.tex:2185: Warning: Undefined citation: 'kent2002'
./Tutorial/chapter_align.tex:2366: Warning: Undefined citation: 'schneider2005'
./Tutorial/chapter_align.tex:2366: Warning: Undefined label: 'sec:substitution_matrices'
./Tutorial/chapter_align.tex:2569: Warning: '_' occurring outside math mode
./Tutorial/chapter_align.tex:2919: Warning: Undefined citation: 'altschul1990'
./Tutorial/chapter_align.tex:2991: Warning: Undefined citation: 'henikoff1992'
./Tutorial/chapter_align.tex:2991: Warning: Undefined citation: 'dayhoff1978'
./Tutorial/chapter_align.tex:3015: Warning: Undefined citation: 'schneider2005'
./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio'
./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast'
./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast'
./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast'
./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast'
./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast'
./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools'
./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast'
./Tutorial/chapter_blast.tex:282: Warning: Undefined label: 'sec:running-www-blast'
./Tutorial/chapter_blast.tex:284: Warning: Undefined label: 'sec:running-local-blast'
./Tutorial/chapter_blast.tex:299: Warning: Undefined label: 'sec:appendix-handles'
./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:align'
./Tutorial/chapter_blast.tex:445: Warning: Undefined label: 'fig:blastrecord'
./Tutorial/chapter_blast.tex:461: Warning: Undefined label: 'fig:psiblastrecord'
./Tutorial/chapter_searchio.tex:734: Warning: Undefined label: 'chapter:seq_annot'
./Tutorial/chapter_searchio.tex:1082: Warning: Undefined label: 'sec:SeqIO-index'
./Tutorial/chapter_entrez.tex:21: Warning: Undefined label: 'sec:entrez-specialized-parsers'
./Tutorial/chapter_entrez.tex:60: Warning: Undefined label: 'sec:entrez-webenv'
./Tutorial/chapter_entrez.tex:63: Warning: Undefined label: 'sec:BioSQL'
./Tutorial/chapter_entrez.tex:216: Warning: Undefined label: 'sec:efetch'
./Tutorial/chapter_entrez.tex:220: Warning: Undefined label: 'sec:entrez-einfo'
./Tutorial/chapter_entrez.tex:234: Warning: Undefined label: 'sec:efetch'
./Tutorial/chapter_entrez.tex:297: Warning: Undefined label: 'sec:entrez-webenv'
./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:SeqIO_GenBank_Online'
./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:efetch'
./Tutorial/chapter_entrez.tex:417: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_entrez.tex:479: Warning: Undefined label: 'sec:entrez-specialized-parsers'
./Tutorial/chapter_entrez.tex:481: Warning: Undefined label: 'sec:entrez-webenv'
./Tutorial/chapter_entrez.tex:562: Warning: Undefined label: 'sec:elink-citations'
./Tutorial/chapter_entrez.tex:568: Warning: Undefined label: 'sec:entrez_example_genbank'
./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:SeqIO_GenBank_Online'
./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:efetch'
./Tutorial/chapter_entrez.tex:897: Warning: Undefined label: 'sec:entrez-webenv'
./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode
./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode
./Tutorial/chapter_entrez.tex:1065: Warning: Undefined label: 'sec:orchids'
./Tutorial/chapter_entrez.tex:1108: Warning: Undefined label: 'sec:entrez-webenv'
./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode
./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode
./Tutorial/chapter_entrez.tex:1154: Warning: Undefined label: 'sec:orchids'
./Tutorial/chapter_entrez.tex:1206: Warning: Undefined label: 'sec:entrez-webenv'
./Tutorial/chapter_entrez.tex:1241: Warning: Undefined label: 'sec:entrez-webenv'
./Tutorial/chapter_entrez.tex:1248: Warning: Undefined label: 'sec:SeqIO_GenBank_Online'
./Tutorial/chapter_entrez.tex:1249: Warning: Undefined label: 'sec:entrez-webenv'
./Tutorial/chapter_entrez.tex:1301: Warning: Undefined label: 'chapter:seqio'
./Tutorial/chapter_entrez.tex:1325: Warning: Undefined label: 'sec:entrez-guidelines'
./Tutorial/chapter_entrez.tex:1326: Warning: Undefined label: 'sec:entrez-webenv'
./Tutorial/chapter_entrez.tex:1386: Warning: Undefined label: 'sec:entrez-search-fetch-genbank'
./Tutorial/chapter_entrez.tex:1417: Warning: Undefined label: 'sec:entrez_example_genbank'
./Tutorial/chapter_entrez.tex:1494: Warning: Undefined label: 'sec:entrez-and-medline'
./Tutorial/chapter_entrez.tex:1499: Warning: Undefined label: 'sec:elink'
./Tutorial/chapter_entrez.tex:1523: Warning: Undefined label: 'sec:entrez-webenv'
./Tutorial/chapter_uniprot.tex:12: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt'
./Tutorial/chapter_uniprot.tex:37: Warning: Undefined label: 'sec:expasy_swissprot'
./Tutorial/chapter_uniprot.tex:45: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt'
./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode
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./Tutorial/chapter_pdb.tex:85: Warning: Undefined label: 'sec:problem_structures'
./Tutorial/chapter_pdb.tex:276: Warning: Undefined label: 'fig:smcra'
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./Tutorial/chapter_pdb.tex:422: Warning: Undefined label: 'sec:hetero_problems'
./Tutorial/chapter_pdb.tex:467: Warning: Undefined label: 'sec:point_mutations'
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./Tutorial/chapter_pdb.tex:593: Warning: '_' occurring outside math mode
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./Tutorial/chapter_pdb.tex:647: Warning: '_' occurring outside math mode
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./Tutorial/chapter_pdb.tex:684: Warning: '_' occurring outside math mode
./Tutorial/chapter_pdb.tex:970: Warning: Undefined label: 'table:ic-attribs'
./Tutorial/chapter_pdb.tex:1015: Warning: Undefined citation: 'golub1989'
./Tutorial/chapter_pdb.tex:1043: Warning: Undefined citation: 'hamelryck2005'
./Tutorial/chapter_pdb.tex:1078: Warning: Undefined label: 'table:DSSP-codes'
./Tutorial/chapter_pdb.tex:1118: Warning: Undefined label: 'sec:residue_depth'
./Tutorial/chapter_pdb.tex:1121: Warning: '_' occurring outside math mode
./Tutorial/chapter_pdb.tex:1169: Warning: Undefined citation: 'hamelryck2003a'
./Tutorial/chapter_pdb.tex:1183: Warning: '_' occurring outside math mode
./Tutorial/chapter_pdb.tex:1380: Warning: Undefined citation: 'hamelryck2003b'
./Tutorial/chapter_pdb.tex:1381: Warning: Undefined citation: 'majumdar2005'
./Tutorial/chapter_phylo.tex:9: Warning: Undefined citation: 'talevich2012'
./Tutorial/chapter_phylo.tex:96: Warning: Undefined label: 'fig:phylo-simple-draw'
./Tutorial/chapter_phylo.tex:192: Warning: Undefined label: 'fig:phylo-color-draw'
./Tutorial/chapter_phylo.tex:711: Warning: Undefined label: 'sec:alignment-tools'
./Tutorial/chapter_phylo.tex:782: Warning: Undefined label: 'sec:PhyloXML'
./Tutorial/chapter_motifs.tex:8: Warning: Undefined label: 'sec:links'
./Tutorial/chapter_motifs.tex:164: Warning: Undefined citation: 'cornish1985'
./Tutorial/chapter_motifs.tex:165: Warning: Undefined citation: 'cavener1987'
./Tutorial/chapter_motifs.tex:541: Warning: Undefined citation: 'bailey1994'
./Tutorial/chapter_motifs.tex:687: Warning: Undefined citation: 'matys2003'
./Tutorial/chapter_motifs.tex:771: Warning: Undefined label: 'table:transfaccodes'
./Tutorial/chapter_cluster.tex:6: Warning: Undefined citation: 'dehoon2004'
./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'lecuyer1988'
./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'kachitvichyanukul1988'
./Tutorial/chapter_cluster.tex:154: Warning: Undefined citation: 'snedecor1989'
./Tutorial/chapter_cluster.tex:183: Warning: Undefined label: 'sec:distancefunctions'
./Tutorial/chapter_cluster.tex:277: Warning: Undefined label: 'sec:distancefunctions'
./Tutorial/chapter_cluster.tex:345: Warning: Undefined label: 'sec:distancefunctions'
./Tutorial/chapter_cluster.tex:555: Warning: Undefined label: 'sec:distancefunctions'
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\OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org /
 pub / databases / uniprot / current _ release / knowledgebase / complete /

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[]\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u
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\OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) 
[]\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm
tt/m/n/10 SeqRecord.format(...)

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[]\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm
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\OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t
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[]\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi
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\OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c
mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three-

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[]\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix
 []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu
tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt
t/m/n/10 aligner.mismatch_score

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[]\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat
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[][]

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\OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments 
is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing
 [][]\OT1/cmtt/m/n/10 len(alignments)

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[][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle 
con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10
 HSPFragment

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[][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files
 with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/
m/n/10 QueryResult

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[]\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10
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\OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT
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[][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 ,

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[]\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us
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[]\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 
also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic
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[]\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m
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\OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m
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\OT1/cmr/m/n/10 breaks and dis-or-dered residues and atoms as de-scribed above 
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[]\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t
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\OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, 
[][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"})
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[]\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, 
find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10
 ,
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[]\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https :
 / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was
 added in Biopy-

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[209]) [210] (./Tutorial/chapter_motifs.tex
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\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man
d reads the com-plete file di-rectly, so you can close the file af-ter call-ing
 [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 .

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Chapter 15.

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\OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849.
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[]\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l
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\OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 
val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec
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(./_minted-Tutorial/4307A980AB242F22FB1B0952E3FD37C067B6D4EEEA70E83368C1BFCE3E2
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Chapter 4.

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(./_minted-Tutorial/1B29C13B779A89B3DE705BA0061B879367B6D4EEEA70E83368C1BFCE3E2
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Chapter 5.

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\OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org /
 pub / databases / uniprot / current _ release / knowledgebase / complete /

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[]\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u
p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1
/cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 ,

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\OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) 
[]\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm
tt/m/n/10 SeqRecord.format(...)

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[]\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm
tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt
/m/n/10 FastqGeneralIterator

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A4A36.pygtex)) [68] (./Tutorial/chapter_align.tex
Chapter 6.

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\OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t
or/iterator. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write()

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[][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u
s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just
 use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert()

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[]\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi
le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO

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\OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c
mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three-

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[]\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix
 []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu
tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt
t/m/n/10 aligner.mismatch_score

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[]\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat
rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t
ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt
/m/n/10 aligner.mismatch_score

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[][]

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\OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments 
is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing
 [][]\OT1/cmtt/m/n/10 len(alignments)

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Chapter 7.
[118]
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(./Tutorial/chapter_searchio.tex
Chapter 8.

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[][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle 
con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10
 HSPFragment

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[][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files
 with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/
m/n/10 QueryResult

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[]\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10
 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr
/m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment

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\OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT
1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like 
[][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 ,

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[]\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us
-ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt
/m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 .

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[]\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 
also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic
h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse

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Chapter 9.
[144]
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Chapter 10.

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[]\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n
/10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/
m/n/10 SwissProt.read(handle)

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[]\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m
en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re
cord

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Chapter 11.

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\OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m
/n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/Model/Chain/Residue/Ato
m)
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\OT1/cmr/m/n/10 breaks and dis-or-dered residues and atoms as de-scribed above 
are han-dled cor-rectly. \OT1/cmtt/m/n/10 structure[]rebuild[]test(entity)

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[][] 

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[]\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t
he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor

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\OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, 
[][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"})
[212 <./images/phylo-draw-example.png>]
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[]\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, 
find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10
 ,
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[]\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https :
 / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was
 added in Biopy-
[215]
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Chapter 14.

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\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man
d reads the com-plete file di-rectly, so you can close the file af-ter call-ing
 [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 .

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Chapter 15.
[245] [246] [247] [248]
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\OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra
nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$

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[][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them.
 The items be-ing clus-tered are num-bered from 0 to $[]$,

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\OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered,
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[]\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result
_K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT
1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 
. 
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[]\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the
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tt/m/n/10 cross_track_links
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\OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul
d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator

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\OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849.
fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[
]primer.fastq\OT1/cmr/m/n/10 . 
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[]\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10
 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use
 [][]\OT1/cmtt/m/n/10 pylab.savefig(...)

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[]\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l
ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c
mr/m/n/10 .

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\OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 
val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec
ted_frequencies[^^MD^^M, ^^ME^^M]

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Chapter 21.

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[]\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte
st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT
1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase
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Chapter 22.

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[]\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri
ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 {
(i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk}
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[][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the
 log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor

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Chapter 23.
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Chapter 24.

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\OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org /
 pub / databases / uniprot / current _ release / knowledgebase / complete /

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[]\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u
p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1
/cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 ,

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\OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) 
[]\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm
tt/m/n/10 SeqRecord.format(...)

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[]\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm
tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt
/m/n/10 FastqGeneralIterator

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Chapter 6.

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\OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t
or/iterator. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write()

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[][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u
s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just
 use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert()

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[]\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi
le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO

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\OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c
mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three-

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[]\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix
 []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu
tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt
t/m/n/10 aligner.mismatch_score

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[]\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat
rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t
ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt
/m/n/10 aligner.mismatch_score

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[][]

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\OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments 
is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing
 [][]\OT1/cmtt/m/n/10 len(alignments)

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Chapter 7.
[118]
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) [124] [125 <./images/BlastRecord.png>] [126 <./images/PSIBlastRecord.png>]
(./Tutorial/chapter_searchio.tex
Chapter 8.

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[][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle 
con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10
 HSPFragment

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[][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files
 with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/
m/n/10 QueryResult

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[]\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10
 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr
/m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment

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\OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT
1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like 
[][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 ,

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[]\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us
-ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt
/m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 .

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[]\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 
also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic
h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse

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Chapter 9.
[144]
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Chapter 10.

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[]\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n
/10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/
m/n/10 SwissProt.read(handle)

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[]\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m
en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re
cord

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Chapter 11.

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\OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m
/n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/Model/Chain/Residue/Ato
m)
Excluding 'htmlonly' comment.
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\OT1/cmr/m/n/10 breaks and dis-or-dered residues and atoms as de-scribed above 
are han-dled cor-rectly. \OT1/cmtt/m/n/10 structure[]rebuild[]test(entity)

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[][] 

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[]\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t
he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor

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\OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, 
[][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"})
[212 <./images/phylo-draw-example.png>]
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[]\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, 
find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10
 ,
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[]\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https :
 / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was
 added in Biopy-
[215]
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Chapter 14.

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\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man
d reads the com-plete file di-rectly, so you can close the file af-ter call-ing
 [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 .

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\OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra
nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$

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[][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them.
 The items be-ing clus-tered are num-bered from 0 to $[]$,

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\OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered,
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 [] 
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\OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered,
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[]\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result
_K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT
1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 
. 
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[]\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the
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\OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul
d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator

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\OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849.
fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[
]primer.fastq\OT1/cmr/m/n/10 . 
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[]\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10
 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use
 [][]\OT1/cmtt/m/n/10 pylab.savefig(...)

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[]\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l
ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c
mr/m/n/10 .

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\OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 
val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec
ted_frequencies[^^MD^^M, ^^ME^^M]

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Chapter 21.

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[]\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte
st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT
1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase
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Chapter 22.

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[]\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri
ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 {
(i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk}
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[][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the
 log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor

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Chapter 23.
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Chapter 24.

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Output written on biopdb_faq.pdf (15 pages, 159031 bytes).
Transcript written on biopdb_faq.log.
pdflatex biopdb_faq.tex
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[]\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p
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[3]
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ate, release_-date, structure_-

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\T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to
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[4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10]
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\T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co
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[]\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e
xposure(model)  

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\T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1
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[]\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE 
DIS-CLAIM
[15] (./biopdb_faq.aux) )
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Output written on biopdb_faq.pdf (15 pages, 159031 bytes).
Transcript written on biopdb_faq.log.
make[2]: Leaving directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/Doc'
make[1]: Leaving directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg'
	rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg'
mkdir -p Tests_avoid
for avoid in  PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_GenePop PopGen_GenePop_EasyController XXmotif_tool PDB_ResidueDepth mmtf mmtf_online  BioSQL_MySQLdb BioSQL_psycopg2   \
	    ; do \
    mv Tests/test_${avoid}.py Tests_avoid ; \
done
mv: cannot stat 'Tests/test_NACCESS_tool.py': No such file or directory
# For the doc package we need a clean testsuite without all the remaining files.  So keep a clean copy here
mkdir -p debian/tmp_tests
cp -a Tests debian/tmp_tests
# remove duplicated file
rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz
# We also keep the tests we need to avoid for later inspection
cp -a Tests_avoid debian/tmp_tests
# in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir
# to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set
LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \
	--test-args='set -e; \
                             mkdir -p {build_dir}/home; \
                             mkdir -p {build_dir}/Doc/examples; \
                             cp -a Doc/Tutorial.tex {build_dir}/Doc; \
                             cp -a Doc/Tutorial {build_dir}/Doc; \
                             cp -a Doc/examples {build_dir}/Doc; \
                             cp -a Tests {build_dir}; \
                             cd {build_dir}/Tests; \
                             env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline'
	pybuild --test -i python{version} -p 3.9 --test --system=custom "--test-args=set -e; \\\
                             mkdir -p {build_dir}/home; \\\
                             mkdir -p {build_dir}/Doc/examples; \\\
                             cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\
                             cp -a Doc/Tutorial {build_dir}/Doc; \\\
                             cp -a Doc/examples {build_dir}/Doc; \\\
                             cp -a Tests {build_dir}; \\\
                             cd {build_dir}/Tests; \\\
                             env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline"
I: pybuild base:232: set -e; \
                             mkdir -p /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/home; \
                             mkdir -p /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples; \
                             cp -a Doc/Tutorial.tex /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc; \
                             cp -a Doc/Tutorial /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc; \
                             cp -a Doc/examples /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc; \
                             cp -a Tests /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build; \
                             cd /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests; \
                             env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/home python3.9 run_tests.py --offline
test_Ace ... ok
test_Affy ... ok
test_AlignIO ... ok
test_AlignIO_ClustalIO ... ok
test_AlignIO_EmbossIO ... ok
test_AlignIO_FastaIO ... ok
test_AlignIO_MauveIO ... ok
test_AlignIO_PhylipIO ... ok
test_AlignIO_convert ... ok
test_AlignInfo ... ok
test_Application ... ok
test_BWA_tool ... ok
test_BioSQL_MySQLdb_online ... skipping. internet not available
test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample)
test_BioSQL_mysql_connector_online ... skipping. internet not available
test_BioSQL_psycopg2_online ... skipping. internet not available
test_BioSQL_sqlite3 ... ok
test_BioSQL_sqlite3_online ... skipping. internet not available
test_Blast_Record ... ok
test_CAPS ... ok
test_Chi2 ... ok
test_ClustalOmega_tool ... ok
test_Clustalw_tool ... ok
test_Cluster ... ok
test_CodonTable ... ok
test_ColorSpiral ... ok
test_Compass ... ok
test_Consensus ... ok
test_Crystal ... ok
test_Dialign_tool ... ok
test_EMBL_unittest ... ok
test_Emboss ... ok
test_EmbossPrimer ... ok
test_Entrez ... ok
test_Entrez_online ... skipping. internet not available
test_Entrez_parser ... ok
test_Enzyme ... ok
test_ExPASy ... skipping. internet not available
test_FSSP ... ok
test_Fasttree_tool ... ok
test_File ... ok
test_GenBank ... ok
test_GenomeDiagram ... Warn: Can't find .pfb for face 'Times-Roman'
ok
test_GraphicsBitmaps ... skipping. Check the fonts needed by ReportLab if you want bitmaps from Bio.Graphics
Can't setFont(Times-Roman) missing the T1 files?
Originally <class 'TypeError'>: makeT1Font() argument 2 must be str, not None
test_GraphicsChromosome ... ok
test_GraphicsDistribution ... ok
test_GraphicsGeneral ... ok
test_HMMCasino ... ok
test_HMMGeneral ... ok
test_KEGG ... ok
test_KEGG_online ... skipping. internet not available
test_KGML_graphics ... ok
test_KGML_graphics_online ... skipping. internet not available
test_KGML_nographics ... ok
test_KeyWList ... ok
test_LogisticRegression ... ok
test_MafIO_index ... ok
test_Mafft_tool ... ok
test_MarkovModel ... /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_MarkovModel.py:403: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray
  training_outputs = array(
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_MarkovModel.py:411: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray
  training_states = array(
ok
test_Medline ... ok
test_Muscle_tool ... ok
test_NCBITextParser ... ok
test_NCBIXML ... ok
test_NCBI_BLAST_tools ... /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ blastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids)
  warnings.warn(
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ blastp and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -ipglist,-negative_ipglist,-negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids)
  warnings.warn(
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ blastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -ipglist,-negative_ipglist,-negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids)
  warnings.warn(
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ deltablast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids)
  warnings.warn(
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ psiblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -ipglist,-negative_ipglist,-negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids)
  warnings.warn(
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ rpsblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -sorthits,-sorthsps,-subject_besthit)
  warnings.warn(
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ rpstblastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -sorthits,-sorthsps)
  warnings.warn(
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ tblastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids)
  warnings.warn(
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ tblastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids)
  warnings.warn(
ok
test_NCBI_qblast ... ok
test_NMR ... ok
test_NaiveBayes ... ok
test_Nexus ... ok
test_PAML_baseml ... ok
test_PAML_codeml ... ok
test_PAML_yn00 ... ok
test_PDBList ... skipping. internet not available
test_PDB_DSSP ... /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match

  warnings.warn(err)
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match

  warnings.warn(err)
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Invalid mmCIF file use --verbose option to see errors

  warnings.warn(err)
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Invalid mmCIF file use --verbose option to see errors

  warnings.warn(err)
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Invalid mmCIF file use --verbose option to see errors

  warnings.warn(err)
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Invalid mmCIF file use --verbose option to see errors

  warnings.warn(err)
ok
test_PDB_Dice ... ok
test_PDB_Disordered ... ok
test_PDB_Exposure ... ok
test_PDB_FragmentMapper ... ok
test_PDB_KDTree ... ok
test_PDB_MMCIF2Dict ... ok
test_PDB_MMCIFIO ... ok
test_PDB_MMCIFParser ... ok
test_PDB_NACCESS ... ok
test_PDB_PDBIO ... ok
test_PDB_PDBParser ... ok
test_PDB_Polypetide ... ok
test_PDB_SMCRA ... ok
test_PDB_StructureAlignment ... ok
test_PDB_Superimposer ... ok
test_PDB_internal_coords ... ok
test_PDB_parse_pdb_header ... ok
test_PDB_vectors ... ok
test_PQR ... ok
test_Pathway ... ok
test_Phd ... ok
test_Phylo ... ok
test_PhyloXML ... ok
test_Phylo_CDAO ... ok
test_Phylo_NeXML ... ok
test_Phylo_matplotlib ... ok
test_Phylo_networkx ... ok
test_PopGen_GenePop_nodepend ... ok
test_Prank_tool ... ok
test_Probcons_tool ... ok
test_ProtParam ... ok
test_QCPSuperimposer ... ok
test_RCSBFormats ... ok
test_Restriction ... ok
test_SCOP_Astral ... ok
test_SCOP_Cla ... ok
test_SCOP_Des ... ok
test_SCOP_Dom ... ok
test_SCOP_Hie ... ok
test_SCOP_Raf ... ok
test_SCOP_Residues ... ok
test_SCOP_Scop ... ok
test_SCOP_online ... skipping. internet not available
test_SVDSuperimposer ... ok
test_SearchIO_blast_tab ... ok
test_SearchIO_blast_tab_index ... ok
test_SearchIO_blast_text ... ok
test_SearchIO_blast_xml ... ok
test_SearchIO_blast_xml_index ... ok
test_SearchIO_blat_psl ... ok
test_SearchIO_blat_psl_index ... ok
test_SearchIO_exonerate ... ok
test_SearchIO_exonerate_text_index ... ok
test_SearchIO_exonerate_vulgar_index ... ok
test_SearchIO_fasta_m10 ... ok
test_SearchIO_fasta_m10_index ... ok
test_SearchIO_hhsuite2_text ... ok
test_SearchIO_hmmer2_text ... ok
test_SearchIO_hmmer2_text_index ... ok
test_SearchIO_hmmer3_domtab ... ok
test_SearchIO_hmmer3_domtab_index ... ok
test_SearchIO_hmmer3_tab ... ok
test_SearchIO_hmmer3_tab_index ... ok
test_SearchIO_hmmer3_text ... ok
test_SearchIO_hmmer3_text_index ... ok
test_SearchIO_interproscan_xml ... ok
test_SearchIO_legacy ... ok
test_SearchIO_model ... ok
test_SearchIO_write ... ok
test_SeqFeature ... ok
test_SeqIO ... ok
test_SeqIO_AbiIO ... ok
test_SeqIO_FastaIO ... ok
test_SeqIO_Gck ... ok
test_SeqIO_Insdc ... /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/Scanner.py:303: BiopythonParserWarning: Non-standard feature line wrapping (didn't break on comma)?
  warnings.warn(
ok
test_SeqIO_NibIO ... ok
test_SeqIO_PdbIO ... ok
test_SeqIO_QualityIO ... ok
test_SeqIO_SeqXML ... ok
test_SeqIO_SnapGene ... ok
test_SeqIO_Xdna ... ok
test_SeqIO_features ... ok
test_SeqIO_index ... ok
test_SeqIO_online ... skipping. internet not available
test_SeqIO_write ... ok
test_SeqRecord ... ok
test_SeqUtils ... ok
test_Seq_objs ... ok
test_SffIO ... ok
test_SubsMat ... /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__init__.py:126: BiopythonDeprecationWarning: Bio.SubsMat has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.substitution_matrices as a replacement, and contact the Biopython developers if you still need the Bio.SubsMat module.
  warnings.warn(
ok
test_SwissProt ... ok
test_TCoffee_tool ... ok
test_TogoWS ... skipping. internet not available
test_TreeConstruction ... ok
test_Tutorial ... ok
test_UniGene ... ok
test_UniProt_GOA ... ok
test_Uniprot ... ok
test_Wise ... ok
test_align ... ok
test_align_substitution_matrices ... ok
test_bgzf ... ok
test_cellosaurus ... ok
test_codonalign ... /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/codonalignment.py:113: BiopythonWarning: Please make sure the two CodonAlignment objects are sharing the same codon table. This is not checked by Biopython.
  warnings.warn(
/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Seq.py:2309: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid.
  warnings.warn(
ok
test_geo ... ok
test_kNN ... ok
test_lowess ... /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics/__init__.py:11: BiopythonDeprecationWarning: Bio.Statistics has been deprecated, and we intend to remove it in a future release of Biopython.
  warnings.warn(
ok
test_motifs ... ok
test_motifs_online ... skipping. internet not available
test_pairwise2 ... ok
test_pairwise2_no_C ... ok
test_pairwise_aligner ... ok
test_phenotype ... ok
test_phenotype_fit ... ok
test_phyml_tool ... ok
test_prodoc ... ok
test_prosite1 ... ok
test_prosite2 ... ok
test_psw ... ok
test_raxml_tool ... ok
test_samtools_tool ... ok
test_seq ... /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Seq.py:2334: BiopythonWarning: Partial codon, len(sequence) not a multiple of three. Explicitly trim the sequence or add trailing N before translation. This may become an error in future.
  warnings.warn(
ok
test_translate ... ok
Bio docstring test ... ok
Bio.Affy docstring test ... ok
Bio.Affy.CelFile docstring test ... ok
Bio.Align docstring test ... ok
Bio.Align.AlignInfo docstring test ... ok
Bio.Align.Applications docstring test ... ok
Bio.Align.Applications._ClustalOmega docstring test ... ok
Bio.Align.Applications._Clustalw docstring test ... ok
Bio.Align.Applications._Dialign docstring test ... ok
Bio.Align.Applications._MSAProbs docstring test ... ok
Bio.Align.Applications._Mafft docstring test ... ok
Bio.Align.Applications._Muscle docstring test ... ok
Bio.Align.Applications._Prank docstring test ... ok
Bio.Align.Applications._Probcons docstring test ... ok
Bio.Align.Applications._TCoffee docstring test ... ok
Bio.Align._aligners docstring test ... ok
Bio.Align.substitution_matrices docstring test ... ok
Bio.AlignIO docstring test ... ok
Bio.AlignIO.ClustalIO docstring test ... ok
Bio.AlignIO.EmbossIO docstring test ... ok
Bio.AlignIO.FastaIO docstring test ... ok
Bio.AlignIO.Interfaces docstring test ... ok
Bio.AlignIO.MafIO docstring test ... ok
Bio.AlignIO.MauveIO docstring test ... ok
Bio.AlignIO.MsfIO docstring test ... ok
Bio.AlignIO.NexusIO docstring test ... ok
Bio.AlignIO.PhylipIO docstring test ... ok
Bio.AlignIO.StockholmIO docstring test ... ok
Bio.Application docstring test ... ok
Bio.Blast docstring test ... ok
Bio.Blast.Applications docstring test ... ok
Bio.Blast.NCBIWWW docstring test ... ok
Bio.Blast.NCBIXML docstring test ... ok
Bio.Blast.ParseBlastTable docstring test ... ok
Bio.Blast.Record docstring test ... ok
Bio.CAPS docstring test ... ok
Bio.Cluster docstring test ... ok
Bio.Cluster._cluster docstring test ... ok
Bio.Compass docstring test ... ok
Bio.Crystal docstring test ... ok
Bio.Data docstring test ... ok
Bio.Data.CodonTable docstring test ... ok
Bio.Data.IUPACData docstring test ... ok
Bio.Data.SCOPData docstring test ... ok
Bio.Emboss docstring test ... ok
Bio.Emboss.Applications docstring test ... ok
Bio.Emboss.Primer3 docstring test ... ok
Bio.Emboss.PrimerSearch docstring test ... ok
Bio.Entrez.Parser docstring test ... ok
Bio.ExPASy.Enzyme docstring test ... ok
Bio.ExPASy.Prodoc docstring test ... ok
Bio.ExPASy.Prosite docstring test ... ok
Bio.ExPASy.ScanProsite docstring test ... ok
Bio.ExPASy.cellosaurus docstring test ... ok
Bio.FSSP docstring test ... ok
Bio.FSSP.FSSPTools docstring test ... ok
Bio.FSSP.fssp_rec docstring test ... ok
Bio.File docstring test ... ok
Bio.GenBank docstring test ... ok
Bio.GenBank.Record docstring test ... ok
Bio.GenBank.Scanner docstring test ... ok
Bio.GenBank.utils docstring test ... ok
Bio.Geo docstring test ... ok
Bio.Geo.Record docstring test ... ok
Bio.Graphics docstring test ... ok
Bio.Graphics.BasicChromosome docstring test ... ok
Bio.Graphics.ColorSpiral docstring test ... ok
Bio.Graphics.Comparative docstring test ... ok
Bio.Graphics.DisplayRepresentation docstring test ... ok
Bio.Graphics.Distribution docstring test ... ok
Bio.Graphics.GenomeDiagram docstring test ... ok
Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... ok
Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... ok
Bio.Graphics.GenomeDiagram._Colors docstring test ... ok
Bio.Graphics.GenomeDiagram._CrossLink docstring test ... ok
Bio.Graphics.GenomeDiagram._Diagram docstring test ... ok
Bio.Graphics.GenomeDiagram._Feature docstring test ... ok
Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... ok
Bio.Graphics.GenomeDiagram._Graph docstring test ... ok
Bio.Graphics.GenomeDiagram._GraphSet docstring test ... ok
Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... ok
Bio.Graphics.GenomeDiagram._Track docstring test ... ok
Bio.Graphics.KGML_vis docstring test ... ok
Bio.HMM docstring test ... ok
Bio.HMM.DynamicProgramming docstring test ... ok
Bio.HMM.MarkovModel docstring test ... ok
Bio.HMM.Trainer docstring test ... ok
Bio.HMM.Utilities docstring test ... ok
Bio.KEGG docstring test ... ok
Bio.KEGG.Compound docstring test ... ok
Bio.KEGG.Enzyme docstring test ... ok
Bio.KEGG.Gene docstring test ... ok
Bio.KEGG.KGML docstring test ... ok
Bio.KEGG.KGML.KGML_parser docstring test ... ok
Bio.KEGG.KGML.KGML_pathway docstring test ... ok
Bio.KEGG.Map docstring test ... ok
Bio.KEGG.REST docstring test ... ok
Bio.LogisticRegression docstring test ... ok
Bio.MarkovModel docstring test ... ok
Bio.MaxEntropy docstring test ... ok
Bio.Medline docstring test ... ok
Bio.NMR docstring test ... ok
Bio.NMR.NOEtools docstring test ... ok
Bio.NMR.xpktools docstring test ... ok
Bio.NaiveBayes docstring test ... ok
Bio.Nexus docstring test ... ok
Bio.Nexus.Nexus docstring test ... ok
Bio.Nexus.Nodes docstring test ... ok
Bio.Nexus.StandardData docstring test ... ok
Bio.Nexus.Trees docstring test ... ok
Bio.Nexus.cnexus docstring test ... ok
Bio.PDB docstring test ... ok
Bio.PDB.AbstractPropertyMap docstring test ... ok
Bio.PDB.Atom docstring test ... ok
Bio.PDB.Chain docstring test ... ok
Bio.PDB.DSSP docstring test ... ok
Bio.PDB.Dice docstring test ... ok
Bio.PDB.Entity docstring test ... ok
Bio.PDB.FragmentMapper docstring test ... ok
Bio.PDB.HSExposure docstring test ... ok
Bio.PDB.MMCIF2Dict docstring test ... ok
Bio.PDB.MMCIFParser docstring test ... ok
Bio.PDB.Model docstring test ... ok
Bio.PDB.NACCESS docstring test ... ok
Bio.PDB.NeighborSearch docstring test ... ok
Bio.PDB.PDBExceptions docstring test ... ok
Bio.PDB.PDBIO docstring test ... ok
Bio.PDB.PDBList docstring test ... ok
Bio.PDB.PDBParser docstring test ... ok
Bio.PDB.PICIO docstring test ... ok
Bio.PDB.PSEA docstring test ... ok
Bio.PDB.Polypeptide docstring test ... ok
Bio.PDB.QCPSuperimposer docstring test ... ok
Bio.PDB.QCPSuperimposer.qcprotmodule docstring test ... ok
Bio.PDB.Residue docstring test ... ok
Bio.PDB.ResidueDepth docstring test ... ok
Bio.PDB.SCADIO docstring test ... ok
Bio.PDB.Selection docstring test ... ok
Bio.PDB.Structure docstring test ... ok
Bio.PDB.StructureAlignment docstring test ... ok
Bio.PDB.StructureBuilder docstring test ... ok
Bio.PDB.Superimposer docstring test ... ok
Bio.PDB.ic_data docstring test ... ok
Bio.PDB.ic_rebuild docstring test ... ok
Bio.PDB.internal_coords docstring test ... ok
Bio.PDB.kdtrees docstring test ... ok
Bio.PDB.mmcifio docstring test ... ok
Bio.PDB.mmtf docstring test ... ok
Bio.PDB.mmtf.DefaultParser docstring test ... ok
Bio.PDB.mmtf.mmtfio docstring test ... ok
Bio.PDB.parse_pdb_header docstring test ... ok
Bio.PDB.vectors docstring test ... ok
Bio.Pathway docstring test ... ok
Bio.Pathway.Rep docstring test ... ok
Bio.Pathway.Rep.Graph docstring test ... ok
Bio.Pathway.Rep.MultiGraph docstring test ... ok
Bio.Phylo docstring test ... ok
Bio.Phylo.Applications docstring test ... ok
Bio.Phylo.Applications._Fasttree docstring test ... ok
Bio.Phylo.Applications._Phyml docstring test ... ok
Bio.Phylo.Applications._Raxml docstring test ... ok
Bio.Phylo.BaseTree docstring test ... ok
Bio.Phylo.CDAO docstring test ... ok
Bio.Phylo.CDAOIO docstring test ... ok
Bio.Phylo.Consensus docstring test ... ok
Bio.Phylo.NeXML docstring test ... ok
Bio.Phylo.NeXMLIO docstring test ... ok
Bio.Phylo.Newick docstring test ... ok
Bio.Phylo.NewickIO docstring test ... ok
Bio.Phylo.NexusIO docstring test ... ok
Bio.Phylo.PAML docstring test ... ok
Bio.Phylo.PAML._paml docstring test ... ok
Bio.Phylo.PAML._parse_baseml docstring test ... ok
Bio.Phylo.PAML._parse_codeml docstring test ... ok
Bio.Phylo.PAML._parse_yn00 docstring test ... ok
Bio.Phylo.PAML.baseml docstring test ... ok
Bio.Phylo.PAML.chi2 docstring test ... ok
Bio.Phylo.PAML.codeml docstring test ... ok
Bio.Phylo.PAML.yn00 docstring test ... ok
Bio.Phylo.PhyloXML docstring test ... ok
Bio.Phylo.PhyloXMLIO docstring test ... ok
Bio.Phylo.TreeConstruction docstring test ... ok
Bio.Phylo._cdao_owl docstring test ... ok
Bio.Phylo._io docstring test ... ok
Bio.Phylo._utils docstring test ... ok
Bio.PopGen docstring test ... ok
Bio.PopGen.GenePop docstring test ... ok
Bio.PopGen.GenePop.Controller docstring test ... ok
Bio.PopGen.GenePop.EasyController docstring test ... ok
Bio.PopGen.GenePop.FileParser docstring test ... ok
Bio.PopGen.GenePop.LargeFileParser docstring test ... ok
Bio.Restriction docstring test ... ok
Bio.Restriction.PrintFormat docstring test ... ok
Bio.Restriction.Restriction docstring test ... ok
Bio.Restriction.Restriction_Dictionary docstring test ... ok
Bio.SCOP docstring test ... ok
Bio.SCOP.Cla docstring test ... ok
Bio.SCOP.Des docstring test ... ok
Bio.SCOP.Dom docstring test ... ok
Bio.SCOP.Hie docstring test ... ok
Bio.SCOP.Raf docstring test ... ok
Bio.SCOP.Residues docstring test ... ok
Bio.SVDSuperimposer docstring test ... ok
Bio.SearchIO docstring test ... ok
Bio.SearchIO.BlastIO docstring test ... ok
Bio.SearchIO.BlastIO.blast_tab docstring test ... ok
Bio.SearchIO.BlastIO.blast_text docstring test ... ok
Bio.SearchIO.BlastIO.blast_xml docstring test ... ok
Bio.SearchIO.BlatIO docstring test ... ok
Bio.SearchIO.ExonerateIO docstring test ... ok
Bio.SearchIO.ExonerateIO._base docstring test ... ok
Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok
Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok
Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok
Bio.SearchIO.FastaIO docstring test ... ok
Bio.SearchIO.HHsuiteIO docstring test ... ok
Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok
Bio.SearchIO.HmmerIO docstring test ... ok
Bio.SearchIO.HmmerIO._base docstring test ... ok
Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok
Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok
Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok
Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok
Bio.SearchIO.InterproscanIO docstring test ... ok
Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok
Bio.SearchIO._index docstring test ... ok
Bio.SearchIO._legacy docstring test ... ok
Bio.SearchIO._legacy.NCBIStandalone docstring test ... ok
Bio.SearchIO._legacy.ParserSupport docstring test ... ok
Bio.SearchIO._model docstring test ... ok
Bio.SearchIO._model._base docstring test ... ok
Bio.SearchIO._model.hit docstring test ... ok
Bio.SearchIO._model.hsp docstring test ... ok
Bio.SearchIO._model.query docstring test ... ok
Bio.SearchIO._utils docstring test ... ok
Bio.Seq docstring test ... ok
Bio.SeqFeature docstring test ... ok
Bio.SeqIO docstring test ... ok
Bio.SeqIO.AbiIO docstring test ... ok
Bio.SeqIO.AceIO docstring test ... ok
Bio.SeqIO.FastaIO docstring test ... ok
Bio.SeqIO.GckIO docstring test ... ok
Bio.SeqIO.IgIO docstring test ... ok
Bio.SeqIO.InsdcIO docstring test ... ok
Bio.SeqIO.Interfaces docstring test ... ok
Bio.SeqIO.NibIO docstring test ... ok
Bio.SeqIO.PdbIO docstring test ... ok
Bio.SeqIO.PhdIO docstring test ... ok
Bio.SeqIO.PirIO docstring test ... ok
Bio.SeqIO.QualityIO docstring test ... ok
Bio.SeqIO.SeqXmlIO docstring test ... ok
Bio.SeqIO.SffIO docstring test ... ok
Bio.SeqIO.SnapGeneIO docstring test ... ok
Bio.SeqIO.SwissIO docstring test ... ok
Bio.SeqIO.TabIO docstring test ... ok
Bio.SeqIO.UniprotIO docstring test ... ok
Bio.SeqIO.XdnaIO docstring test ... ok
Bio.SeqIO._index docstring test ... ok
Bio.SeqRecord docstring test ... ok
Bio.SeqUtils docstring test ... ok
Bio.SeqUtils.CheckSum docstring test ... ok
Bio.SeqUtils.CodonUsage docstring test ... ok
Bio.SeqUtils.CodonUsageIndices docstring test ... ok
Bio.SeqUtils.IsoelectricPoint docstring test ... ok
Bio.SeqUtils.MeltingTemp docstring test ... ok
Bio.SeqUtils.ProtParam docstring test ... ok
Bio.SeqUtils.ProtParamData docstring test ... ok
Bio.SeqUtils.lcc docstring test ... ok
Bio.Sequencing docstring test ... ok
Bio.Sequencing.Ace docstring test ... ok
Bio.Sequencing.Applications docstring test ... ok
Bio.Sequencing.Applications._Novoalign docstring test ... ok
Bio.Sequencing.Applications._bwa docstring test ... ok
Bio.Sequencing.Applications._samtools docstring test ... ok
Bio.Sequencing.Phd docstring test ... ok
Bio.Statistics docstring test ... ok
Bio.Statistics.lowess docstring test ... ok
Bio.SubsMat docstring test ... ok
Bio.SubsMat.FreqTable docstring test ... ok
Bio.SubsMat.MatrixInfo docstring test ... ok
Bio.SwissProt docstring test ... ok
Bio.SwissProt.KeyWList docstring test ... ok
Bio.UniGene docstring test ... ok
Bio.UniProt docstring test ... ok
Bio.UniProt.GOA docstring test ... ok
Bio.Wise docstring test ... ok
Bio.Wise.dnal docstring test ... ok
Bio.Wise.psw docstring test ... ok
Bio._utils docstring test ... ok
Bio.bgzf docstring test ... ok
Bio.codonalign docstring test ... ok
Bio.codonalign.chisq docstring test ... ok
Bio.codonalign.codonalignment docstring test ... ok
Bio.codonalign.codonseq docstring test ... ok
Bio.cpairwise2 docstring test ... ok
Bio.kNN docstring test ... ok
Bio.motifs docstring test ... ok
Bio.motifs._pwm docstring test ... ok
Bio.motifs.alignace docstring test ... ok
Bio.motifs.applications docstring test ... ok
Bio.motifs.applications._xxmotif docstring test ... ok
Bio.motifs.clusterbuster docstring test ... ok
Bio.motifs.jaspar docstring test ... ok
Bio.motifs.jaspar.db docstring test ... ok
Bio.motifs.mast docstring test ... ok
Bio.motifs.matrix docstring test ... ok
Bio.motifs.meme docstring test ... ok
Bio.motifs.minimal docstring test ... ok
Bio.motifs.pfm docstring test ... ok
Bio.motifs.thresholds docstring test ... ok
Bio.motifs.transfac docstring test ... ok
Bio.motifs.xms docstring test ... ok
Bio.pairwise2 docstring test ... ok
Bio.phenotype docstring test ... ok
Bio.phenotype.phen_micro docstring test ... ok
Bio.phenotype.pm_fitting docstring test ... ok
BioSQL docstring test ... ok
BioSQL.BioSeq docstring test ... ok
BioSQL.BioSeqDatabase docstring test ... ok
BioSQL.DBUtils docstring test ... ok
BioSQL.Loader docstring test ... ok
----------------------------------------------------------------------
Ran 517 tests in 972.873 seconds

Skipping any tests requiring internet access
Python version: 3.9.1rc1 (default, Nov 27 2020, 19:38:39) 
[GCC 10.2.0]
Operating system: posix linux
	rm -fr -- /tmp/dh-xdg-rundir-rCunnx0m
mv Tests_avoid/* Tests
rmdir Tests_avoid
make[1]: Leaving directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -i -O--buildsystem=pybuild
   dh_prep -i -O--buildsystem=pybuild
	rm -f -- debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars
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   debian/rules override_dh_auto_install
make[1]: Entering directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg'
dh_auto_install
	install -d /build/python-biopython-nbTMLV/python-biopython-1.78\+dfsg/debian/tmp
	pybuild --install -i python{version} -p 3.9 --dest-dir /build/python-biopython-nbTMLV/python-biopython-1.78\+dfsg/debian/tmp
I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp 
running install
running build
running build_py
running egg_info
writing biopython.egg-info/PKG-INFO
writing dependency_links to biopython.egg-info/dependency_links.txt
writing requirements to biopython.egg-info/requires.txt
writing top-level names to biopython.egg-info/top_level.txt
reading manifest file 'biopython.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '*.py{}' found anywhere in distribution
warning: no previously-included files matching '*.py-e' found anywhere in distribution
writing manifest file 'biopython.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cluster
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Cluster/cyano.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cluster
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Cluster/README -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cluster
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_PDBIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PAML_yn00.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/.coveragerc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_FastaIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_linear.svg -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_circular.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigils.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map01100_transparency.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/organism.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/scatter_test_7.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map01100_widths.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/scatter_test_1.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/square_test.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_meth_circular.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map03070_original.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/labels_default.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/organism.eps -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/line_graph.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/spiral_test.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map03070_colors.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_labels.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrows.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_linear.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_circular.svg -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map03070_transparency.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/README -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/organism.svg -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/tRNA_chrom.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_circular.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/simple_bar.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigils_c.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_meth_linear.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_linear.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/line_graph_c.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/multi_bar.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/labels_default_c.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map01100_original.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/random_organism.pdf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Consensus.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_CAPS.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/lysin.trees.4.6 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/bad.tree -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/lysin.trees -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/bad3.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00_dotted.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/SE.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/bad2.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/species.tree -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/bad1.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/README.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model6.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/SE.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model4.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model5.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model0.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model7.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model8.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model1.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model3.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model2.ctl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/alignment.phylip -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/dottednames.phylip -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/longnames.fasta -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/aa_alignment.phylip -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/dottednum.fasta -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/bad_results.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/baseml_SE.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/gen_results.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_mysql_connector_online.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_xml_index.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM645.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_series.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_affy_chp.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_dual.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM804.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_family.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSE16.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM691.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_platform.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_affy.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM700.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_convert.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blat_psl_index.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NaiveBayes.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_motifs.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_RCSBFormats.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SnapGene/sample-e.dna -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SnapGene/pFA-KanMX4.dna -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SnapGene/sample-d.dna -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd1 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd_solexa -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd_454 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd2 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/biosqldb-sqlite.sql -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/biosqldb-mysql.sql -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/cor6_6.db -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/biosqldb-pg.sql -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_kNN.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro2.aln -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/egfr_id -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/drosophilla.fasta -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl5.fa -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/adh.aln -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro4.aln -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro1.aln -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/egfr_nucl.fa -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro3.aln -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/egfr_pro.aln -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl1.fa -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl4.fa -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl3.fa -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl2.fa -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro5.aln -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_sqlite3.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_phenotype.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P0CK95.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P0A186.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/F2CXE6.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/O23729.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P84001.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp016 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/H2CNN8.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp009 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.gff -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/keywlist.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp015 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp012 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp005 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/uni003 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/H2CNN8.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/uni002 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SwissProt.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Gck
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Ace
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsGeneral.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/run_tests.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_NibIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Crystal.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/humor.maf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_test.maf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/length_coords_mismatch.maf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/cnksr3.fa -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10.maf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ExPASy.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/trees-uris.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/meta_taxa.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/sets.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/taxa.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/meta_types.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/tolweb.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/edgelabels.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/phenoscape.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/treebase-record.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/timetree.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/trees.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_SnapGene.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Seq_objs.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_geo.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_SeqXML.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Superimposer.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_MafIO_index.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Ace.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_DSSP.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ColorSpiral.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KeyWList.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_cellosaurus.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignInfo.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1.fa -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/sam2.sam -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/sam1.sam -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/readme.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Saf
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_CodonTable.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_mysql_connector.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Cla.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/ExtendedPhylip
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_005.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2220L_blastx_001.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_actin.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_006.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_KDTree.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/wrapping_as_solexa.fastq -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_rna_as_sanger.fastq -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/longreads_as_illumina.fastq -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/longreads_as_sanger.fastq -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_dna_as_illumina.fastq -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/zero_length.fastq -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_rna_as_illumina.fastq -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_in_qual.fastq -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_spaces.fastq -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_CDAO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Medline
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/lipoprotein.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/lactate.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/proline.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/wisteria.nu -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/rosemary.pro -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output002.m10 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/dups.fasta -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output006.m10 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/aster_no_wrap.pro -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output009.m10 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output014.m10 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/lavender.nu -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_bgzf.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsBitmaps.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_phyml_tool.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/common_BioSQL_online.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/requires_wise.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/pairwise2_testCases.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_text_index.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_online.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/phyloxml_examples.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/example.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/bcl_2.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/apaf.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/made_up.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_text.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Compass
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Compass/comtest2 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Compass
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/hennigian.phy -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Chi2.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/IntelliGenetics
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Fasttree_tool.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_matplotlib.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NMR/noed.xpk -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NMR
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_interproscan_xml.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_UniGene.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_index.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko03070.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko00253.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/enzyme.sample -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko00010.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko01100.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/map00950.rea -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/compound.irregular -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/enzyme.4letter -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KEGG_online.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Entrez_online.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/no_smpl1.ab1 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/3730.ab1 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/test.fsa -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/fake.ab1 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/3100.ab1 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/nonascii_encoding.ab1 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/310.ab1 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/A6_1-DB3.ab1 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/int_node_labels.nwk -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/test_Nexus_input.nex -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/codonposset.nex -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/bats.nex -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/test.new -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer2_text_index.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ClustalOmega_tool.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_NeXML.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_text.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_AbiIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_QualityIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Dom.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Cluster.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/kipo_prt_sample.embl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/DD231055_edited.embl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/RepBase23.02.embl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/DD231055_edited2.embl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/A04195.imgt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KGML_nographics.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_QCPSuperimposer.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_35_001.psl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_003.psl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_001.psl -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/mirna.pslx -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_002.pslx -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/tmpdirprankmsaNU2DKO
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SffIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_FragmentMapper.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_006.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_008.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_003.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/README.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_004.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_001.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_010.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_007.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_005.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c2space.gen -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/haplo2.gen -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/haplo.gen -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c2line.gen -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/README -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c3space.gen -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c3line.gen -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/big.gen -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Restriction.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/paired.sff -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/README.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/triple_sff.idx -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/greek.sff -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_codonalign.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Enzyme.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeuralNetwork
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_prodoc.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Polypetide.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_psw.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_model.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsChromosome.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/BadPlate.json -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/Plate_2.json -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_pairwise2_no_C.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_domtab.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PAML_codeml.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_SMCRA.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ProtParam.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_qblast.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_PdbIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2BEG.cif -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Tutorial.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_write.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Cellosaurus/cell_lines_1.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Cellosaurus/cell_lines_3.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Registry/seqs.fasta -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Registry/bt001 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_TogoWS.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_networkx.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Probcons_tool.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_raxml_tool.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Entrez.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_prosite2.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/common_BioSQL.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_Gck.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Residues.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDBList.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_translate.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Emboss.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_vectors.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_internal_coords.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_pairwise_aligner.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/msf
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/msf/W_prot.msf -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/msf
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BWA_tool.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hhsuite2_text.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsDistribution.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_tab.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/InterProScan
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_psycopg2_online.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/matcher_pair.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/bac_find.primer3 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/NirK.primer3 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/NirK_full.primer3 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/cds_reverse.primer3 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/internal_oligo.primer3 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/needle_asis.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/alignret.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/water2.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/cds_forward.primer3 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/matcher_simple.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/no_oligo.primer3 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Uniprot.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PhyloXML.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_exonerate.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_xml.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_PDBParser.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_EMBL_unittest.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/tmpdirprankmsaTNfm2E
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_PhylipIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Compass.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_Insdc.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Pathway.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/taqi.htm -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/foki.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/crei.htm -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/taqi.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/cac81.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/cac81.htm -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/EU851978.gbk -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/HM138502_output.gbk -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_write.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phd.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Exposure.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/NC_001802.fna -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/NC_001802lc.fna -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Affy.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/abdb.xms -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/alignace.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.adh.de.oops.html.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.psp_test.classic.zoops.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/transfac.dat -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/Arnt.sites -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.html -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.crp0.de.oops.txt.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.adh.de.oops.html.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.adh.de.oops.html.html -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/MA0056.1.transfac -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.crp0.de.oops.txt.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/SRF.pfm -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/minimal_test.meme -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.adh.classic.oops.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.farntrans5.classic.anr.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.INO_up800.classic.oops.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/clusterbuster.pfm.out -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/clusterbuster.pfm -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/dir.hie.scop.txt_test -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_align_substitution_matrices.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Dice.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_features.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Scop.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqRecord.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/FSSP
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/FSSP/1cnv.fssp -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/FSSP
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_MySQLdb_online.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_File.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PopGen_GenePop_nodepend.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blat_psl.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhblits_emptytable.hhr -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/allx.hhr -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/hhpred_9590198.hhr -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhblits.hhr -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/README.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhsearch.hhr -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhblits_onlyheader.hhr -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Clustalw_tool.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_seq.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Mafft_tool.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_MarkovModel.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Enzyme.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Dom.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_LogisticRegression.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Dice.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_prosite2.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GenomeDiagram.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Medline.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Scop.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_prosite1.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_TogoWS.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/requires_wise.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Muscle_tool.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_pairwise2_no_C.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Affy.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_samtools_tool.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_PDBIO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Entrez.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Cla.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_online.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phd.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_TreeConstruction.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_motifs_online.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Uniprot.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_NibIO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_phyml_tool.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_EMBL_unittest.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_Xdna.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_seq.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Superimposer.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Disordered.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Blast_Record.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Polypetide.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Chi2.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsGeneral.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_psw.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_EmbossPrimer.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqRecord.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsDistribution.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/search_tests_common.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ColorSpiral.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_CodonTable.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_translate.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_pairwise2.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hhsuite2_text.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_pairwise_aligner.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_convert.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PAML_codeml.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_lowess.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_FSSP.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_CAPS.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_UniGene.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Dialign_tool.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Raf.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_codonalign.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/seq_tests_common.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Pathway.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBIXML.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo_NeXML.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_vectors.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KeyWList.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsBitmaps.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsChromosome.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_cellosaurus.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Emboss.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Cluster.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_bgzf.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/common_BioSQL.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Consensus.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_phenotype.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Restriction.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ExPASy.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBITextParser.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KEGG_online.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_internal_coords.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KGML_graphics_online.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_write.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_MMCIFIO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NaiveBayes.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_Gck.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDBList.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_legacy.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_raxml_tool.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Residues.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SVDSuperimposer.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PAML_baseml.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NMR.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_kNN.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignInfo.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KGML_nographics.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBI_qblast.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo_CDAO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_geo.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Compass.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_UniProt_GOA.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_phenotype_fit.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_parse_pdb_header.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Wise.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_TCoffee_tool.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_QCPSuperimposer.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Entrez_parser.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Exposure.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ProtParam.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BWA_tool.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_align_substitution_matrices.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_text.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Ace.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_SMCRA.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqUtils.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Nexus.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Entrez_online.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Clustalw_tool.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PQR.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SffIO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_HMMGeneral.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqFeature.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SubsMat.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Tutorial.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Application.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/pairwise2_testCases.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KEGG.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_HMMCasino.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_File.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Astral.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SwissProt.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_KDTree.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Seq_objs.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_RCSBFormats.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/requires_internet.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PhyloXML.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_features.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Crystal.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/seq_tests_common.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqUtils.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PAML_baseml.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_motifs_online.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_MauveIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_q_none.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_ner.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/README.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Wise
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Wise/human_114_g01_exons.fna_01 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Wise
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_pairwise2.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_lowess.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_Xdna.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_online.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_fasta_m10_index.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GenBank.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Dialign_tool.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/B_nuc.pir -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/clustalw.pir -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/DMA_nuc.pir -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/Cw_prot.pir -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_align.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_TCoffee_tool.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Astral.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_HMMCasino.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/CodonUsage
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/CodonUsage
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Application.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Disordered.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_legacy.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_even_littleendian.nib -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_odd_bigendian.nib -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_even.fa -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_even_bigendian.nib -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_odd.fa -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_odd_littleendian.nib -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_EmbossIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/opuntia.aln -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/promals3d.aln -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/temp horses.fasta -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/hedgehog.aln -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/protein.aln -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/odd_consensus.aln -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/cw02.aln -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_EmbossPrimer.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SubsMat.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_StructureAlignment.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed3.html -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo3.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/ncbi_mim.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/espell.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/biosample.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch3.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed6.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink8.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary5.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/efetch_schemas.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/nucleotide1.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch6.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink1.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/protein.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink4.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink6.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch7.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo4.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary7.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink3.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/epost1.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink2.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/journals.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch8.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/nucleotide2.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed4.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary4.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink5.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo2.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary6.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch2.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed2.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch5.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/egquery2.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo1.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary8.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/egquery1.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary3.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary9.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/epost3.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch4.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink7.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary1.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed5.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch1.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/taxonomy.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/epost2.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed7.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary2.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed1.xml -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_TreeConstruction.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KGML_graphics.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_ClustalIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BWA
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/ColorSpiral.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/BaseTree.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/CDAOIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NexusIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/NeXML.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/_utils.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NewickIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Newick.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/QualityIO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/TabIO.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/Interfaces.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/UniprotIO.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/MarkovModel.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Probcons.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Muscle.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Prank.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Dialign.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Prank.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BENNER22 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/RAO -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BENNER6 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/HOXD70 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM70 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM250 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/RISLER -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/FENG -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM30 -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/GENETIC -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.c -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/__pycache__/AlignInfo.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/AlignInfo.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/SCOPData.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/HSExposure.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/Primer3.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/MarkovModel.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/Trainer.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/utils.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/xms.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/clusterbuster.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/thresholds.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/mast.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/transfac.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/thresholds.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/lcc.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Residues.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Des.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Cla.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Dom.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Raf.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP
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creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/__pycache__
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/ScanProsite.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/Enzyme.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/Prosite.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/cellosaurus.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/kNN.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/Parser.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/XSDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/XSDs
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/__pycache__/Parser.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__pycache__
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/section.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/para.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/format.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
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copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/references.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene/__init__.py -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene
creating /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene/__pycache__
copying /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene/__pycache__
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_PDBIO.py to test_PDB_PDBIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_motifs.py to test_motifs.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_kNN.py to test_kNN.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/run_tests.py to run_tests.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_NibIO.py to test_SeqIO_NibIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Crystal.py to test_Crystal.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_parse_pdb_header.py to test_PDB_parse_pdb_header.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_SnapGene.py to test_SeqIO_SnapGene.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_geo.py to test_geo.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Ace.py to test_Ace.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_DSSP.py to test_PDB_DSSP.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_FSSP.py to test_FSSP.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/requires_internet.py to requires_internet.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_NACCESS.py to test_PDB_NACCESS.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Blast_Record.py to test_Blast_Record.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_prosite1.py to test_prosite1.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_UniProt_GOA.py to test_UniProt_GOA.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsBitmaps.py to test_GraphicsBitmaps.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_phyml_tool.py to test_phyml_tool.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/requires_wise.py to requires_wise.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/pairwise2_testCases.py to pairwise2_testCases.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Medline.py to test_Medline.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_QCPSuperimposer.py to test_QCPSuperimposer.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_MMCIFIO.py to test_PDB_MMCIFIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Polypetide.py to test_PDB_Polypetide.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_psw.py to test_psw.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_pairwise2_no_C.py to test_pairwise2_no_C.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PQR.py to test_PQR.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_SMCRA.py to test_PDB_SMCRA.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Wise.py to test_Wise.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Tutorial.py to test_Tutorial.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_raxml_tool.py to test_raxml_tool.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_prosite2.py to test_prosite2.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_Gck.py to test_SeqIO_Gck.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_translate.py to test_translate.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_internal_coords.py to test_PDB_internal_coords.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BWA_tool.py to test_BWA_tool.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hhsuite2_text.py to test_SearchIO_hhsuite2_text.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_PDBParser.py to test_PDB_PDBParser.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Compass.py to test_Compass.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phd.py to test_Phd.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Exposure.py to test_PDB_Exposure.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Affy.py to test_Affy.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_align_substitution_matrices.py to test_align_substitution_matrices.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Dice.py to test_PDB_Dice.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_File.py to test_File.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_seq.py to test_seq.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_lowess.py to test_lowess.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_Xdna.py to test_SeqIO_Xdna.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_align.py to test_align.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Application.py to test_Application.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Disordered.py to test_PDB_Disordered.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SubsMat.py to test_SubsMat.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NMR.py to test_NMR.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/Loader.py to Loader.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/getgene.py to getgene.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-39.pyc
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byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-39.pyc
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byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-39.pyc
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byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/ic_data.py to ic_data.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Model.py to Model.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PICIO.py to PICIO.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Selection.py to Selection.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/Record.py to Record.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/utils.py to utils.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/pairwise2.py to pairwise2.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/matrix.py to matrix.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/xms.py to xms.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/meme.py to meme.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/mast.py to mast.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/alignace.py to alignace.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/transfac.py to transfac.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/minimal.py to minimal.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/pfm.py to pfm.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Des.py to Des.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/fssp_rec.py to fssp_rec.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/FSSPTools.py to FSSPTools.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/psw.py to psw.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/dnal.py to dnal.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Crystal/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/File.py to File.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/kNN.py to kNN.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-39.pyc
running install_egg_info
Copying biopython.egg-info to /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/biopython-1.78.egg-info
Skipping SOURCES.txt
running install_scripts
dh_numpy3 -ppython3-biopython
dh_numpy3: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions).
make[1]: Leaving directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg'
   dh_install -i -O--buildsystem=pybuild
	install -d debian/.debhelper/generated/python3-biopython
	install -d debian/.debhelper/generated/python-biopython-doc
	install -d debian/python3-biopython-sql//usr/lib/python3.9/dist-packages
	cp --reflink=auto -a debian/tmp/usr/lib/python3.9/dist-packages/BioSQL debian/python3-biopython-sql//usr/lib/python3.9/dist-packages/
	install -d debian/.debhelper/generated/python3-biopython-sql
	rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log
   debian/rules override_dh_installdocs-indep
make[1]: Entering directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg'
dh_installdocs -i
dh_installdocs: warning: Cannot auto-detect main package for python-biopython-doc.  If the default is wrong, please use --doc-main-package
	install -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc
	cd './Doc/..' && find 'Doc' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc
	cp --reflink=auto -a ./debian/README.test debian/python-biopython-doc/usr/share/doc/python-biopython-doc
	cp --reflink=auto -a ./debian/tests/run-unit-test debian/python-biopython-doc/usr/share/doc/python-biopython-doc
	cd './debian/Tests_fixme/..' && find 'Tests_fixme' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc
	chmod -R u\+rw,go=rX debian/python-biopython-doc/usr/share/doc
	install -p -m0644 debian/copyright debian/python-biopython-doc/usr/share/doc/python-biopython-doc/copyright
	install -d debian/python-biopython-doc/usr/share/doc-base/
	install -p -m0644 debian/python-biopython-doc.doc-base debian/python-biopython-doc/usr/share/doc-base/biopython-tutorial
	install -d debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql
	install -p -m0644 debian/copyright debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/copyright
find debian -name __pycache__ -type d | xargs rm -rf
find debian -name example.fastq.gz
debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality/example.fastq.gz
# dh_installdocs seems to refuse copying zero length files (for instance Tests/Blast/tab_2226_tblastn_002.txt) but these are needed for the tests as well
cp -a debian/tmp_tests/* /build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/
find debian -name .cvsignore -delete
# no idea why Doc dir ends up in /usr/share/doc/python-biopython since biopython 1.71 - just move it into right place
if [ -d debian/python-biopython-doc/usr/share/doc/python-biopython/Doc ] ; then \
    mv debian/python-biopython-doc/usr/share/doc/python-biopython/Doc debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc ; \
fi
cd debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc && make clean
make[2]: Entering directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc'
grep: ../Bio/__init__.py: No such file or directory
  File "<string>", line 1
    ; print('dev' if 'dev' in __version__ else __version__)
    ^
SyntaxError: invalid syntax
( for f in  ; do make clean -C $f ; done )
rm -f Tutorial.aux
rm -f Tutorial.toc
rm -f Tutorial.log
rm -f Tutorial.out
rm -f Tutorial.haux
rm -f Tutorial.htoc
rm -f biopdb_faq.aux
rm -f biopdb_faq.log
rm -f biopdb_faq.out
rm -f Tutorial/*.aux
make[2]: Leaving directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc'
find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name Makefile -delete
find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.aux" -delete
find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.lyx" -delete
find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -type d -empty -delete
make[1]: Leaving directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg'
   dh_installchangelogs -i -O--buildsystem=pybuild
	install -p -m0644 debian/changelog debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/changelog.Debian
	install -p -m0644 debian/changelog debian/python-biopython-doc/usr/share/doc/python-biopython-doc/changelog.Debian
   dh_python3 -i -O--buildsystem=pybuild
D: dh_python3 dh_python3:161: version: 4.20201102
D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-i', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': False, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'}
D: dh_python3 dh_python3:164: args: []
D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9)
D: dh_python3 debhelper:107: skipping package: python-biopython-doc
D: dh_python3 debhelper:152: source=python-biopython, binary packages=['python3-biopython-sql']
D: dh_python3 dh_python3:183: processing package python3-biopython-sql...
D: dh_python3 fs:49: moving files from debian/python3-biopython-sql/usr/lib/python3.9/dist-packages to debian/python3-biopython-sql/usr/lib/python3/dist-packages/
D: dh_python3 fs:260: package python3-biopython-sql details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package python3-biopython-sql
D: dh_python3 depends:275: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[]
   dh_installsystemduser -i -O--buildsystem=pybuild
   dh_lintian -i -O--buildsystem=pybuild
	install -d debian/python-biopython-doc/usr/share/lintian/overrides
	install -p -m0644 debian/python-biopython-doc.lintian-overrides debian/python-biopython-doc/usr/share/lintian/overrides/python-biopython-doc
   dh_perl -i -O--buildsystem=pybuild
   dh_link -i -O--buildsystem=pybuild
   dh_strip_nondeterminism -i -O--buildsystem=pybuild
	Using 1607207560 as canonical time
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-simple-draw.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_xs.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_heads.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_l.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_m.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-dot.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot_scatter.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_simple.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Fasta/flowers.pro.gz using File::StripNondeterminism::handlers::gzip
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map03070.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map01100.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz using File::StripNondeterminism::handlers::gzip
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.gz using File::StripNondeterminism::handlers::gzip
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/PSIBlastRecord.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_s.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear_nice.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl2a.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_shafts.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/hist_plot.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf-zoom.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-draw-example.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_labels.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/gc_plot.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/smcra.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigils.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color-draw.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-rooted.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/SRR001666.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/BlastRecord.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular_nice.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular.png using File::StripNondeterminism::handlers::png
   dh_compress -i -O--buildsystem=pybuild
	cd debian/python3-biopython-sql
	cd debian/python-biopython-doc
	chmod a-x usr/share/doc/python3-biopython-sql/changelog.Debian
	gzip -9nf usr/share/doc/python3-biopython-sql/changelog.Debian
	cd '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg'
	chmod a-x usr/share/doc/python-biopython-doc/Doc/Tutorial.pdf usr/share/doc/python-biopython-doc/Doc/Tutorial.tex usr/share/doc/python-biopython-doc/Doc/Tutorial.txt usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_advanced.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_align.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_appendix.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_blast.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cluster.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_contributing.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cookbook.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_entrez.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_graphics.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_introduction.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_kegg.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_learning.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_motifs.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_pdb.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phenotype.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phylo.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_popgen.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_quick_start.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_searchio.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seq_annot.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seq_objects.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seqio.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_testing.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_uniprot.tex usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0ABDE2E70066A4661C3DDA814AC7225814FA033DCB1376922271CBD58A8A4A36.pygtex 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usr/share/doc/python-biopython-doc/Doc/examples/ACT_example.py usr/share/doc/python-biopython-doc/Doc/examples/Plates.csv usr/share/doc/python-biopython-doc/Doc/examples/Proux_et_al_2002_Figure_6.py usr/share/doc/python-biopython-doc/Doc/examples/ec_5.4.2.2.txt usr/share/doc/python-biopython-doc/Doc/examples/getgene.py usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.fasta usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.bgz usr/share/doc/python-biopython-doc/Doc/examples/my_blast.xml usr/share/doc/python-biopython-doc/Doc/examples/nmr/simplepredict.py usr/share/doc/python-biopython-doc/Doc/examples/opuntia.aln usr/share/doc/python-biopython-doc/Doc/examples/opuntia.fasta usr/share/doc/python-biopython-doc/Doc/images/biopython_logo.pdf usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.pdf usr/share/doc/python-biopython-doc/Doc/images/smcra.eps 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usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_2_truncated.fastq usr/share/doc/python-biopython-doc/Tests/BWA/human_g1k_v37_truncated.fasta usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-mysql.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-pg.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-sqlite.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/cor6_6.db usr/share/doc/python-biopython-doc/Tests/Blast/README.txt usr/share/doc/python-biopython-doc/Tests/Blast/mirna.tab usr/share/doc/python-biopython-doc/Tests/Blast/mirna.xml usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_011.txt usr/share/doc/python-biopython-doc/Tests/Blast/tab_2228_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_003.txt 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usr/share/doc/python-biopython-doc/Tests/test_NaiveBayes.py usr/share/doc/python-biopython-doc/Tests/test_Nexus.py usr/share/doc/python-biopython-doc/Tests/test_PAML_baseml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_codeml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_yn00.py usr/share/doc/python-biopython-doc/Tests/test_PDBList.py usr/share/doc/python-biopython-doc/Tests/test_PDB_DSSP.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Exposure.py usr/share/doc/python-biopython-doc/Tests/test_PDB_KDTree.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIF2Dict.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFIO.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFParser.py usr/share/doc/python-biopython-doc/Tests/test_PDB_PDBIO.py usr/share/doc/python-biopython-doc/Tests/test_PDB_PDBParser.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Polypetide.py usr/share/doc/python-biopython-doc/Tests/test_PDB_SMCRA.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Superimposer.py usr/share/doc/python-biopython-doc/Tests/test_PDB_internal_coords.py usr/share/doc/python-biopython-doc/Tests/test_PDB_parse_pdb_header.py usr/share/doc/python-biopython-doc/Tests/test_PDB_vectors.py usr/share/doc/python-biopython-doc/Tests/test_PQR.py usr/share/doc/python-biopython-doc/Tests/test_Pathway.py usr/share/doc/python-biopython-doc/Tests/test_Phd.py usr/share/doc/python-biopython-doc/Tests/test_Phylo.py usr/share/doc/python-biopython-doc/Tests/test_PhyloXML.py usr/share/doc/python-biopython-doc/Tests/test_PopGen_GenePop_nodepend.py usr/share/doc/python-biopython-doc/Tests/test_Prank_tool.py usr/share/doc/python-biopython-doc/Tests/test_ProtParam.py usr/share/doc/python-biopython-doc/Tests/test_QCPSuperimposer.py usr/share/doc/python-biopython-doc/Tests/test_Restriction.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Raf.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Scop.py usr/share/doc/python-biopython-doc/Tests/test_SVDSuperimposer.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blat_psl.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_exonerate.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_fasta_m10.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hhsuite2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_legacy.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_model.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqFeature.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_AbiIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Gck.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Insdc.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_PdbIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_QualityIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SeqXML.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SnapGene.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Xdna.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_features.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_index.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqRecord.py usr/share/doc/python-biopython-doc/Tests/test_SeqUtils.py usr/share/doc/python-biopython-doc/Tests/test_Seq_objs.py usr/share/doc/python-biopython-doc/Tests/test_SffIO.py usr/share/doc/python-biopython-doc/Tests/test_SubsMat.py usr/share/doc/python-biopython-doc/Tests/test_SwissProt.py usr/share/doc/python-biopython-doc/Tests/test_TCoffee_tool.py usr/share/doc/python-biopython-doc/Tests/test_TogoWS.py usr/share/doc/python-biopython-doc/Tests/test_TreeConstruction.py usr/share/doc/python-biopython-doc/Tests/test_Tutorial.py usr/share/doc/python-biopython-doc/Tests/test_UniGene.py usr/share/doc/python-biopython-doc/Tests/test_UniProt_GOA.py usr/share/doc/python-biopython-doc/Tests/test_Uniprot.py usr/share/doc/python-biopython-doc/Tests/test_align.py usr/share/doc/python-biopython-doc/Tests/test_align_substitution_matrices.py usr/share/doc/python-biopython-doc/Tests/test_bgzf.py usr/share/doc/python-biopython-doc/Tests/test_cellosaurus.py usr/share/doc/python-biopython-doc/Tests/test_codonalign.py usr/share/doc/python-biopython-doc/Tests/test_geo.py usr/share/doc/python-biopython-doc/Tests/test_motifs.py usr/share/doc/python-biopython-doc/Tests/test_pairwise_aligner.py usr/share/doc/python-biopython-doc/Tests/test_phenotype.py usr/share/doc/python-biopython-doc/Tests/test_prodoc.py usr/share/doc/python-biopython-doc/Tests/test_prosite1.py usr/share/doc/python-biopython-doc/Tests/test_prosite2.py usr/share/doc/python-biopython-doc/Tests/test_psw.py usr/share/doc/python-biopython-doc/Tests/test_samtools_tool.py usr/share/doc/python-biopython-doc/Tests/test_seq.py usr/share/doc/python-biopython-doc/Tests_avoid/test_EmbossPhylipNew.py usr/share/doc/python-biopython-doc/Tests_avoid/test_MSAProbs_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PAML_tools.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PDB_ResidueDepth.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PopGen_GenePop_EasyController.py usr/share/doc/python-biopython-doc/Tests_avoid/test_XXmotif_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_mmtf.py usr/share/doc/python-biopython-doc/changelog.Debian
	cd '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg'
	rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log
   debian/rules override_dh_fixperms
make[1]: Entering directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg'
dh_fixperms
	find debian/python-biopython-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/python3-biopython-sql ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/python3-biopython-sql/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython-sql/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python3-biopython-sql/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
	find debian/python3-biopython-sql -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python3-biopython-sql/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
	find debian/python-biopython-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biopython-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python-biopython-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
	find debian/python-biopython-doc/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python-biopython-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian -name "*.dtd" -exec chmod -x \{\} \;
make[1]: Leaving directory '/build/python-biopython-nbTMLV/python-biopython-1.78+dfsg'
   dh_missing -i -O--buildsystem=pybuild
   dh_installdeb -i -O--buildsystem=pybuild
	install -d debian/python-biopython-doc/DEBIAN
	install -d debian/python3-biopython-sql/DEBIAN
	printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/postinst
	cat debian/python3-biopython-sql.postinst.debhelper >> debian/python3-biopython-sql/DEBIAN/postinst
	chmod 0755 -- debian/python3-biopython-sql/DEBIAN/postinst
	printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/prerm
	cat debian/python3-biopython-sql.prerm.debhelper >> debian/python3-biopython-sql/DEBIAN/prerm
	chmod 0755 -- debian/python3-biopython-sql/DEBIAN/prerm
   dh_gencontrol -i -O--buildsystem=pybuild
	echo misc:Depends= >> debian/python-biopython-doc.substvars
	echo misc:Pre-Depends= >> debian/python-biopython-doc.substvars
	dpkg-gencontrol -ppython-biopython-doc -ldebian/changelog -Tdebian/python-biopython-doc.substvars -Pdebian/python-biopython-doc
	echo misc:Depends= >> debian/python3-biopython-sql.substvars
	echo misc:Pre-Depends= >> debian/python3-biopython-sql.substvars
	dpkg-gencontrol -ppython3-biopython-sql -ldebian/changelog -Tdebian/python3-biopython-sql.substvars -Pdebian/python3-biopython-sql
dpkg-gencontrol: warning: Provides field of package python3-biopython-sql: substitution variable ${python3:Provides} used, but is not defined
	chmod 0644 -- debian/python3-biopython-sql/DEBIAN/control
	chmod 0644 -- debian/python-biopython-doc/DEBIAN/control
   dh_md5sums -i -O--buildsystem=pybuild
	cd debian/python3-biopython-sql >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	chmod 0644 -- debian/python3-biopython-sql/DEBIAN/md5sums
	cd debian/python-biopython-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	chmod 0644 -- debian/python-biopython-doc/DEBIAN/md5sums
   dh_builddeb -i -O--buildsystem=pybuild
	dpkg-deb --root-owner-group --build debian/python-biopython-doc ..
	dpkg-deb --root-owner-group --build debian/python3-biopython-sql ..
dpkg-deb: building package 'python-biopython-doc' in '../python-biopython-doc_1.78+dfsg-4_all.deb'.
dpkg-deb: building package 'python3-biopython-sql' in '../python3-biopython-sql_1.78+dfsg-4_all.deb'.
 dpkg-genbuildinfo --build=all
 dpkg-genchanges --build=all >../python-biopython_1.78+dfsg-4_all.changes
dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: running special hook: sync-out /build/python-biopython-nbTMLV /tmp/python-biopython-1.78+dfsg-4rg_eyy6w
I: cleaning package lists and apt cache...
W: deleting files in /tmp: tmprcclztk9
W: deleting files in /tmp: tmpteis___k
W: deleting files in /tmp: tmpw99t5u_h
W: deleting files in /tmp: tmps57evuv7
W: deleting files in /tmp: tmpjto77sym
W: deleting files in /tmp: tmpcvhjogzu
W: deleting files in /tmp: tmp4qi22t3h
W: deleting files in /tmp: tmpo8xouvi9
W: deleting files in /tmp: texfonts
I: creating tarball...
I: done
I: removing tempdir /tmp/mmdebstrap.ucTkh7ZhCs...
I: success in 2444.5982 seconds
md5: python-biopython-doc_1.78+dfsg-4_all.deb: OK
md5: python3-biopython-sql_1.78+dfsg-4_all.deb: OK
sha1: python-biopython-doc_1.78+dfsg-4_all.deb: OK
sha1: python3-biopython-sql_1.78+dfsg-4_all.deb: OK
sha256: python-biopython-doc_1.78+dfsg-4_all.deb: OK
sha256: python3-biopython-sql_1.78+dfsg-4_all.deb: OK
Checksums: OK