Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/pysph/pysph_1.0~b0~20191115.gite3d5e10-4_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/pysph-1.0~b0~20191115.gite3d5e10-4cj1qwb9e/pysph_1.0~b0~20191115.gite3d5e10-4_all.buildinfo Get source package info: pysph=1.0~b0~20191115.gite3d5e10-4 Source URL: http://snapshot.notset.fr/mr/package/pysph/1.0~b0~20191115.gite3d5e10-4/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.49 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-7 bsdutils=1:2.36.1-7 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20210119 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 cython3=0.29.21-3+b1 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.3 debianutils=4.11.2 dh-autoreconf=20 dh-python=4.20201102 dh-strip-nondeterminism=1.11.0-1 diffutils=1:3.7-5 docutils-common=0.16+dfsg-3 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210201-1 file=1:5.39-3 findutils=4.8.0-1 fonts-font-awesome=5.0.10+really4.7.0~dfsg-4 fonts-lato=2.0-2.1 fonts-mathjax=2.7.9+dfsg-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 gfortran-10=10.2.1-6 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-2 hostname=3.23 ibverbs-providers=33.1-1 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libaec0=1.0.4-1 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libblas3=3.9.0-3 libblkid1=2.36.1-7 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcbor0=0.5.0+dfsg-2 libcc1-0=10.2.1-6 libcom-err2=1.45.7-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.256 libdebhelper-perl=13.3.3 libdpkg-perl=1.20.7.1 libedit2=3.1-20191231-2+b1 libelf1=0.183-1 libevent-2.1-7=2.1.12-stable-1 libevent-core-2.1-7=2.1.12-stable-1 libevent-dev=2.1.12-stable-1 libevent-extra-2.1-7=2.1.12-stable-1 libevent-openssl-2.1-7=2.1.12-stable-1 libevent-pthreads-2.1-7=2.1.12-stable-1 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libfabric1=1.11.0-2 libffi7=3.3-5 libfido2-1=1.6.0-2 libfile-stripnondeterminism-perl=1.11.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgfortran-10-dev=10.2.1-6 libgfortran5=10.2.1-6 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libhdf5-103-1=1.10.6+repack-2 libhdf5-hl-100=1.10.6+repack-2 libhwloc-dev=2.4.1~rc2+dfsg-2 libhwloc-plugins=2.4.1~rc2+dfsg-2 libhwloc15=2.4.1~rc2+dfsg-2 libibverbs-dev=33.1-1 libibverbs1=33.1-1 libicu67=67.1-6 libisl23=0.23-1 libitm1=10.2.1-6 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui=1.12.1+dfsg-8 libjs-mathjax=2.7.9+dfsg-1 libjs-sphinxdoc=3.4.3-1 libjs-underscore=1.9.1~dfsg-1 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack3=3.9.0-3 liblsan0=10.2.1-6 libltdl-dev=2.4.6-15 libltdl7=2.4.6-15 liblz4-1=1.9.3-1 liblzf1=3.6-3 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.3-3 libmount1=2.36.1-7 libmpc3=1.2.0-1 libmpdec3=2.5.1-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20201114-2 libnl-3-200=3.4.0-1+b1 libnl-3-dev=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnl-route-3-dev=3.4.0-1+b1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma-dev=2.0.12-1+b1 libnuma1=2.0.12-1+b1 libopenmpi-dev=4.1.0-7 libopenmpi3=4.1.0-7 libpam-modules=1.4.0-4 libpam-modules-bin=1.4.0-4 libpam-runtime=1.4.0-4 libpam0g=1.4.0-4 libpciaccess0=0.16-1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-2 libpipeline1=1.5.3-1 libpmix-dev=4.0.0-4 libpmix2=4.0.0-4 libpsm-infinipath1=3.3+20.604758e7-6.1 libpsm2-2=11.2.185-1 libptscotch-6.1=6.1.0-2 libpython3-all-dev=3.9.1-1 libpython3-dev=3.9.1-1 libpython3-stdlib=3.9.1-1 libpython3.9=3.9.1-4 libpython3.9-dev=3.9.1-4 libpython3.9-minimal=3.9.1-4 libpython3.9-stdlib=3.9.1-4 libquadmath0=10.2.1-6 librdmacm1=33.1-1 libreadline8=8.1-1 libscotch-6.1=6.1.0-2 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsemanage-common=3.1-1 libsemanage1=3.1-1+b2 libsepol1=3.1-1 libsigsegv2=2.13-1 libsmartcols1=2.36.1-7 libsqlite3-0=3.34.1-1 libssl1.1=1.1.1i-3 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.3-1 libsz2=1.0.4-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtrilinos-zoltan-dev=12.18.1-1 libtrilinos-zoltan12=12.18.1-1 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libucx0=1.10.0~rc1-7 libudev1=247.3-1 libunistring2=0.9.10-4 libuuid1=2.36.1-7 libx11-6=2:1.7.0-2 libx11-data=2:1.7.0-2 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1.1 libxml2=2.9.10+dfsg-6.3+b1 libxnvctrl0=460.32.03-1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.13-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4 man-db=2.9.4-1 mawk=1.3.4.20200120-2 media-types=4.0.0 mpi-default-bin=1.13 mpi-default-dev=1.13 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 ocl-icd-libopencl1=2.2.14-2 openmpi-bin=4.1.0-7 openmpi-common=4.1.0-7 openssh-client=1:8.4p1-3 openssl=1.1.1i-3 passwd=1:4.8.1-1 patch=2.7.6-7 perl=5.32.1-2 perl-base=5.32.1-2 perl-modules-5.32=5.32.1-2 po-debconf=1.0.21+nmu1 python-babel-localedata=2.8.0+dfsg.1-6 python3=3.9.1-1 python3-alabaster=0.7.8-1.1 python3-all=3.9.1-1 python3-all-dev=3.9.1-1 python3-appdirs=1.4.4-1 python3-attr=20.3.0-1 python3-babel=2.8.0+dfsg.1-6 python3-beaker=1.11.0-1 python3-certifi=2020.6.20-1 python3-chardet=4.0.0-1 python3-compyle=0.7-2 python3-cyarray=1.1-2+b3 python3-decorator=4.4.2-2 python3-dev=3.9.1-1 python3-distutils=3.9.1-2 python3-docutils=0.16+dfsg-3 python3-h5py=2.10.0-9 python3-h5py-serial=2.10.0-9+b2 python3-idna=2.10-1 python3-imagesize=1.2.0-2 python3-importlib-metadata=1.6.0-2 python3-iniconfig=1.1.1-1 python3-jinja2=2.11.2-1 python3-lib2to3=3.9.1-2 python3-mako=1.1.3+ds1-2 python3-markupsafe=1.1.1-1+b3 python3-minimal=3.9.1-1 python3-more-itertools=4.2.0-3 python3-mpi4py=3.0.3-8 python3-nose=1.3.7-7 python3-numpy=1:1.19.5-1 python3-packaging=20.9-1 python3-pkg-resources=52.0.0-1 python3-pluggy=0.13.0-6 python3-py=1.10.0-1 python3-pygments=2.7.1+dfsg-1 python3-pyparsing=2.4.7-1 python3-pytest=6.0.2-2 python3-pytest-runner=2.11.1-1.2 python3-python-utils=2.3.0-2+b2 python3-pytools=2021.1-1 python3-pyzoltan=1.0.1-2+b2 python3-requests=2.25.1+dfsg-2 python3-roman=2.0.0-5 python3-setuptools=52.0.0-1 python3-six=1.15.0-2 python3-snowballstemmer=2.1.0-1 python3-sphinx=3.4.3-1 python3-sphinx-rtd-theme=0.5.1+dfsg-1 python3-stl=2.9.0-1+b4 python3-toml=0.10.1-1 python3-traits=5.2.0-2+b3 python3-tz=2021.1-1 python3-urllib3=1.26.2-1 python3-zipp=1.0.0-3 python3.9=3.9.1-4 python3.9-dev=3.9.1-4 python3.9-minimal=3.9.1-4 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.14 sgml-base=1.30 sphinx-common=3.4.3-1 sphinx-rtd-theme-common=0.5.1+dfsg-1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 trilinos-dev=12.18.1-1 tzdata=2021a-1 util-linux=2.36.1-7 xml-core=0.18+nmu1 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210209T091207Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d pysph=1.0~b0~20191115.gite3d5e10-4 && mkdir -p /build/pysph-OHhIxs && dpkg-source --no-check -x /*.dsc /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10 && chown -R builduser:builduser /build/pysph-OHhIxs" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612896464" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/pysph-OHhIxs /tmp/pysph-1.0~b0~20191115.gite3d5e10-4cj1qwb9e bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210209T091207Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.SaMeQGlEt9 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.SaMeQGlEt9 Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-7). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210209T091207Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210209T091207Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (764 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4663 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210209T091207Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.SaMeQGlEt9 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210209T091207Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 26s (876 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.SaMeQGlEt9 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d pysph=1.0~b0~20191115.gite3d5e10-4 && mkdir -p /build/pysph-OHhIxs && dpkg-source --no-check -x /*.dsc /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10 && chown -R builduser:builduser /build/pysph-OHhIxs"' exec /tmp/mmdebstrap.SaMeQGlEt9 Reading package lists... NOTICE: 'pysph' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/pysph.git Please use: git clone https://salsa.debian.org/science-team/pysph.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2732 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main pysph 1.0~b0~20191115.gite3d5e10-4 (dsc) [2597 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main pysph 1.0~b0~20191115.gite3d5e10-4 (tar) [2714 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main pysph 1.0~b0~20191115.gite3d5e10-4 (diff) [15.1 kB] Fetched 2732 kB in 2s (1138 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'pysph_1.0~b0~20191115.gite3d5e10-4.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting pysph in /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10 dpkg-source: info: unpacking pysph_1.0~b0~20191115.gite3d5e10.orig.tar.gz dpkg-source: info: unpacking pysph_1.0~b0~20191115.gite3d5e10-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Use-local-mathjax.patch dpkg-source: info: applying 0002-autodoc_mock_imports.patch dpkg-source: info: applying 0003-Use-Python-3-in-Makefile.patch dpkg-source: info: applying 0004-Fix-nprocs.patch dpkg-source: info: applying 0005-Spelling.patch dpkg-source: info: applying 0006-Fix-segfaullt-on-non-x86-platforms.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612896464" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.SaMeQGlEt9 dpkg-buildpackage: info: source package pysph dpkg-buildpackage: info: source version 1.0~b0~20191115.gite3d5e10-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Anton Gladky dpkg-source --before-build . debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/tmp8892tfxs/check_omp.pyx tree = Parsing.p_module(s, pxd, full_module_name) /tmp/tmp8892tfxs/check_omp.c: In function ‘__Pyx_InitGlobals’: /tmp/tmp8892tfxs/check_omp.c:1230:1: warning: ‘PyEval_InitThreads’ is deprecated [-Wdeprecated-declarations] 1230 | PyEval_InitThreads(); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.9/Python.h:145, from /tmp/tmp8892tfxs/check_omp.c:4: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ /usr/lib/python3.9/distutils/extension.py:131: UserWarning: Unknown Extension options: 'cython_compile_time_env' warnings.warn(msg) ---------------------------------------------------------------------- Using OpenMP. ---------------------------------------------------------------------- running clean removing '/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it /usr/bin/make clean make[2]: Entering directory '/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10' python3 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/tmpoj3_tk6o/check_omp.pyx tree = Parsing.p_module(s, pxd, full_module_name) /tmp/tmpoj3_tk6o/check_omp.c: In function ‘__Pyx_InitGlobals’: /tmp/tmpoj3_tk6o/check_omp.c:1230:1: warning: ‘PyEval_InitThreads’ is deprecated [-Wdeprecated-declarations] 1230 | PyEval_InitThreads(); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.9/Python.h:145, from /tmp/tmpoj3_tk6o/check_omp.c:4: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ /usr/lib/python3.9/distutils/extension.py:131: UserWarning: Unknown Extension options: 'cython_compile_time_env' warnings.warn(msg) ---------------------------------------------------------------------- Using OpenMP. ---------------------------------------------------------------------- running clean for dir in /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/solid_mech /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/parallel; do rm -f $dir/*.c; done for dir in /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/solid_mech /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/parallel; do rm -f $dir/*.cpp; done make[2]: Leaving directory '/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10' /usr/bin/make -C docs clean make[2]: Entering directory '/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs' rm -rf build/* make[2]: Leaving directory '/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs' rm -f -r PySPH.egg-info rm -f pysph/base/gpu_helper_functions rm -f pysph/base/stratified_sfc_gpu_nnps rm -f pysph/base/z_order_gpu_nnps rm -f pysph/tools/geometry_stl.cpp find . -name '*.pyc' -delete rm -f -r .pytest_cache make[1]: Leaving directory '/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-indep dh binary-indep --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/tmp7r2xweyv/check_omp.pyx tree = Parsing.p_module(s, pxd, full_module_name) /tmp/tmp7r2xweyv/check_omp.c: In function ‘__Pyx_InitGlobals’: /tmp/tmp7r2xweyv/check_omp.c:1230:1: warning: ‘PyEval_InitThreads’ is deprecated [-Wdeprecated-declarations] 1230 | PyEval_InitThreads(); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.9/Python.h:145, from /tmp/tmp7r2xweyv/check_omp.c:4: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/box_sort_nnps.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: pysph/base/nnps_base.pxd:25:13: 'INT_MAX' redeclared /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/c_kernels.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/cell_indexing_nnps.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: pysph/base/nnps_base.pxd:25:13: 'INT_MAX' redeclared /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/linalg3.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/linked_list_nnps.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: pysph/base/nnps_base.pxd:25:13: 'INT_MAX' redeclared warning: pysph/base/linked_list_nnps.pyx:308:12: Unreachable code warning: pysph/base/linked_list_nnps.pyx:338:12: Unreachable code /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/nnps_base.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: pysph/base/nnps_base.pxd:25:13: 'INT_MAX' redeclared /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/octree.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: pysph/base/nnps_base.pxd:25:13: 'INT_MAX' redeclared /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/octree_nnps.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: pysph/base/nnps_base.pxd:25:13: 'INT_MAX' redeclared /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/particle_array.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/point.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/spatial_hash_nnps.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: pysph/base/nnps_base.pxd:25:13: 'INT_MAX' redeclared /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/stratified_hash_nnps.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: pysph/base/nnps_base.pxd:25:13: 'INT_MAX' redeclared /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/stratified_sfc_nnps.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: pysph/base/nnps_base.pxd:25:13: 'INT_MAX' redeclared warning: pysph/base/stratified_sfc_nnps.pxd:22:27: Declarations should not be declared inline. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/z_order_nnps.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: pysph/base/nnps_base.pxd:25:13: 'INT_MAX' redeclared warning: pysph/base/z_order_nnps.pxd:13:27: Declarations should not be declared inline. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/parallel/parallel_manager.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: pysph/base/nnps_base.pxd:25:13: 'INT_MAX' redeclared warning: pysph/parallel/parallel_manager.pyx:30:13: 'INT_MAX' redeclared /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/tools/geometry_stl.pyx tree = Parsing.p_module(s, pxd, full_module_name) ---------------------------------------------------------------------- Using OpenMP. ---------------------------------------------------------------------- ---------------------------------------------------------------------- Using Zoltan from: /usr/include/trilinos /usr/lib ---------------------------------------------------------------------- Warning: passing language='c++' to cythonize() is deprecated. Instead, put "# distutils: language=c++" in your .pyx or .pxd file(s) Compiling pysph/base/particle_array.pyx because it changed. Compiling pysph/base/point.pyx because it changed. Compiling pysph/base/nnps_base.pyx because it changed. Compiling pysph/base/linked_list_nnps.pyx because it changed. Compiling pysph/base/box_sort_nnps.pyx because it changed. Compiling pysph/base/spatial_hash_nnps.pyx because it changed. Compiling pysph/base/cell_indexing_nnps.pyx because it changed. Compiling pysph/base/z_order_nnps.pyx because it changed. Compiling pysph/base/stratified_hash_nnps.pyx because it changed. Compiling pysph/base/stratified_sfc_nnps.pyx because it changed. Compiling pysph/base/octree.pyx because it changed. Compiling pysph/base/octree_nnps.pyx because it changed. Compiling pysph/base/c_kernels.pyx because it changed. Compiling pysph/base/linalg3.pyx because it changed. Compiling pysph/tools/geometry_stl.pyx because it changed. Compiling pysph/parallel/parallel_manager.pyx because it changed. [ 1/16] Cythonizing pysph/base/box_sort_nnps.pyx [ 2/16] Cythonizing pysph/base/c_kernels.pyx [ 3/16] Cythonizing pysph/base/cell_indexing_nnps.pyx [ 4/16] Cythonizing pysph/base/linalg3.pyx [ 5/16] Cythonizing pysph/base/linked_list_nnps.pyx [ 6/16] Cythonizing pysph/base/nnps_base.pyx [ 7/16] Cythonizing pysph/base/octree.pyx [ 8/16] Cythonizing pysph/base/octree_nnps.pyx [ 9/16] Cythonizing pysph/base/particle_array.pyx [10/16] Cythonizing pysph/base/point.pyx [11/16] Cythonizing pysph/base/spatial_hash_nnps.pyx [12/16] Cythonizing pysph/base/stratified_hash_nnps.pyx [13/16] Cythonizing pysph/base/stratified_sfc_nnps.pyx [14/16] Cythonizing pysph/base/z_order_nnps.pyx [15/16] Cythonizing pysph/parallel/parallel_manager.pyx [16/16] Cythonizing pysph/tools/geometry_stl.pyx running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10' I: pybuild base:232: echo /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/tmpsb9zura8/check_omp.pyx tree = Parsing.p_module(s, pxd, full_module_name) /tmp/tmpsb9zura8/check_omp.c: In function ‘__Pyx_InitGlobals’: /tmp/tmpsb9zura8/check_omp.c:1230:1: warning: ‘PyEval_InitThreads’ is deprecated [-Wdeprecated-declarations] 1230 | PyEval_InitThreads(); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.9/Python.h:145, from /tmp/tmpsb9zura8/check_omp.c:4: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ ---------------------------------------------------------------------- Using OpenMP. ---------------------------------------------------------------------- ---------------------------------------------------------------------- Using Zoltan from: /usr/include/trilinos /usr/lib ---------------------------------------------------------------------- Warning: passing language='c++' to cythonize() is deprecated. Instead, put "# distutils: language=c++" in your .pyx or .pxd file(s) running build running build_py creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph copying pysph/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/taylor_green.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/ghia_cavity_data.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/db_exp_data.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/hydrostatic_tank.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/trivial_inlet_outlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/periodic_cylinders.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/cavity.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/poiseuille.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/elliptical_drop.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/flow_past_cylinder_2d.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/run.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/cube.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/couette.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/dam_break_2d.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/dam_break_3d.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/elliptical_drop_simple.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/two_blocks.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/elliptical_drop_no_scheme.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/_db_geometry.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/lattice_cylinders.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples copying pysph/examples/rayleigh_taylor.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/mayavi_viewer.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/sphysics.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/cli.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/cull.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/uniform_distribution.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/pysph_to_vtk.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/pprocess.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/ipy_viewer.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/run_parallel_script.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/gmsh.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/interpolator.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/ndspmhd.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/geometry_utils.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/binder.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/fortranfile.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/sph_evaluator.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/tools/geometry.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/gpu_domain_manager.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/nnps.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/z_order_gpu_nnps_kernels.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/device_helper.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/kernels.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/gpu_nnps.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/gpu_nnps_helper.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/gpu_helper_kernels.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/utils.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/reduce_array.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver copying pysph/solver/application.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver copying pysph/solver/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver copying pysph/solver/vtk_output.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver copying pysph/solver/output.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver copying pysph/solver/solver.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver copying pysph/solver/tools.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver copying pysph/solver/solver_interfaces.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver copying pysph/solver/controller.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver copying pysph/solver/utils.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/acceleration_eval_gpu_helper.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/integrator_step.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/acceleration_eval_cython_helper.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/integrator.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/scheme.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/acceleration_eval.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/surface_tension.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/equation.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/iisph.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/integrator_gpu_helper.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/basic_equations.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/boundary_equations.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/integrator_cython_helper.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/rigid_body.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/sph_compiler.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/acceleration_nnps_helper.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel copying pysph/parallel/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/spheric copying pysph/examples/spheric/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/spheric copying pysph/examples/spheric/moving_square.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/spheric creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/hydrostatic_box.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/accuracy_test_2d.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/robert.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/wc_blastwave.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/shocktube.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/blastwave.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/riemann_2d_config.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/wallshock.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/sjogreen.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/riemann_2d.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/riemann_solver.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/acoustic_wave.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/kelvin_helmholtz_instability.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/shocktube_setup.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/cheng_shu_1d.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/noh.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/sedov.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/gas_dynamics/sod_shocktube.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/sphysics/case6.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/sphysics/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/sphysics/case7.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/sphysics/case1.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/sphysics/case4.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/sphysics/beach_geometry.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/sphysics/periodic_rigidbody.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/sphysics/case8.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/sphysics/case3.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/sphysics/dambreak_sphysics.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/sphysics/case2.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/sphysics/dam_break.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/sphysics/case5.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/solid_mech copying pysph/examples/solid_mech/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/solid_mech copying pysph/examples/solid_mech/rings.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/solid_mech copying pysph/examples/solid_mech/oscillating_plate.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/solid_mech copying pysph/examples/solid_mech/taylor_bar.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/solid_mech copying pysph/examples/solid_mech/impact3d.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/solid_mech copying pysph/examples/solid_mech/impact.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/solid_mech creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/tests copying pysph/examples/tests/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/tests copying pysph/examples/tests/test_examples.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/tests copying pysph/examples/tests/test_riemann_solver.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/tests creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/rigid_body copying pysph/examples/rigid_body/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/rigid_body copying pysph/examples/rigid_body/three_cubes_in_vessel_3d.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/rigid_body copying pysph/examples/rigid_body/sphere_in_vessel_akinci.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/rigid_body copying pysph/examples/rigid_body/cubes_colliding_in_tank.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/rigid_body copying pysph/examples/rigid_body/dam_break3D_sph.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/rigid_body copying pysph/examples/rigid_body/bouncing_cube.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/rigid_body copying pysph/examples/rigid_body/ten_spheres_in_vessel_2d.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/rigid_body copying pysph/examples/rigid_body/three_spheres_in_fluid.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/rigid_body copying pysph/examples/rigid_body/bouncing_cubes.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/rigid_body copying pysph/examples/rigid_body/solid_body_floating_in_tank.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/rigid_body copying pysph/examples/rigid_body/simple.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/rigid_body creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/surface_tension copying pysph/examples/surface_tension/square_droplet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/surface_tension copying pysph/examples/surface_tension/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/surface_tension copying pysph/examples/surface_tension/circular_droplet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/surface_tension copying pysph/examples/surface_tension/khi_sy11.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/surface_tension copying pysph/examples/surface_tension/oscillating_rod.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/surface_tension copying pysph/examples/surface_tension/equilibrium_rod.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/surface_tension copying pysph/examples/surface_tension/interface_instability.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/surface_tension copying pysph/examples/surface_tension/capillary_wave.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/surface_tension copying pysph/examples/surface_tension/khi_tvf.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/surface_tension copying pysph/examples/surface_tension/equilibrium_rod_hex.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/surface_tension creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools/tests copying pysph/tools/tests/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools/tests copying pysph/tools/tests/test_sph_evaluator.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools/tests copying pysph/tools/tests/test_geometry.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools/tests copying pysph/tools/tests/test_geometry_stl.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools/tests copying pysph/tools/tests/test_interpolator.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools/tests creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tree copying pysph/base/tree/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tree copying pysph/base/tree/tree.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tree copying pysph/base/tree/helpers.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tree copying pysph/base/tree/point_tree.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tree creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tests copying pysph/base/tests/test_periodic_nnps.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tests copying pysph/base/tests/test_reduce_array.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tests copying pysph/base/tests/test_neighbor_cache.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tests copying pysph/base/tests/test_kernel.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tests copying pysph/base/tests/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tests copying pysph/base/tests/test_device_helper.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tests copying pysph/base/tests/test_octree.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tests copying pysph/base/tests/test_nnps.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tests copying pysph/base/tests/test_particle_array.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tests copying pysph/base/tests/test_utils.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tests copying pysph/base/tests/test_domain_manager.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tests copying pysph/base/tests/test_linalg3.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tests creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver/tests copying pysph/solver/tests/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver/tests copying pysph/solver/tests/test_application.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver/tests copying pysph/solver/tests/test_solver.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver/tests copying pysph/solver/tests/test_solver_utils.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/solver/tests creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/misc copying pysph/sph/misc/advection.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/misc copying pysph/sph/misc/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/misc creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/gas_dynamics copying pysph/sph/gas_dynamics/basic.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/gas_dynamics copying pysph/sph/gas_dynamics/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/gas_dynamics copying pysph/sph/gas_dynamics/riemann_solver.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/gas_dynamics copying pysph/sph/gas_dynamics/gsph.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/gas_dynamics copying pysph/sph/gas_dynamics/boundary_equations.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/gas_dynamics creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc copying pysph/sph/bc/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc copying pysph/sph/bc/interpolate.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc copying pysph/sph/bc/inlet_outlet_manager.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc copying pysph/sph/wc/basic.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc copying pysph/sph/wc/edac.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc copying pysph/sph/wc/pcisph.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc copying pysph/sph/wc/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc copying pysph/sph/wc/parshikov.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc copying pysph/sph/wc/viscosity.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc copying pysph/sph/wc/kernel_correction.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc copying pysph/sph/wc/density_correction.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc copying pysph/sph/wc/zhanghuadams.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc copying pysph/sph/wc/shift.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc copying pysph/sph/wc/linalg.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc copying pysph/sph/wc/crksph.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc copying pysph/sph/wc/gtvf.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc copying pysph/sph/wc/transport_velocity.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/wc creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/isph copying pysph/sph/isph/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/isph copying pysph/sph/isph/sisph.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/isph copying pysph/sph/isph/wall_normal.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/isph copying pysph/sph/isph/isph.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/isph creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/solid_mech copying pysph/sph/solid_mech/basic.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/solid_mech copying pysph/sph/solid_mech/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/solid_mech copying pysph/sph/solid_mech/hvi.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/solid_mech creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests copying pysph/sph/tests/test_kernel_corrections.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests copying pysph/sph/tests/test_acceleration_eval.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests copying pysph/sph/tests/test_integrator.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests copying pysph/sph/tests/test_multi_group_integrator.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests copying pysph/sph/tests/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests copying pysph/sph/tests/test_scheme.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests copying pysph/sph/tests/test_linalg.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests copying pysph/sph/tests/test_equations.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests copying pysph/sph/tests/test_acceleration_eval_cython_helper.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests copying pysph/sph/tests/test_integrator_step.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests copying pysph/sph/tests/test_integrator_cython_helper.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests copying pysph/sph/tests/test_riemann_solver.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/hybrid copying pysph/sph/bc/hybrid/inlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/hybrid copying pysph/sph/bc/hybrid/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/hybrid copying pysph/sph/bc/hybrid/outlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/hybrid copying pysph/sph/bc/hybrid/simple_inlet_outlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/hybrid creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/donothing copying pysph/sph/bc/donothing/inlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/donothing copying pysph/sph/bc/donothing/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/donothing copying pysph/sph/bc/donothing/outlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/donothing copying pysph/sph/bc/donothing/simple_inlet_outlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/donothing creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/mod_donothing copying pysph/sph/bc/mod_donothing/inlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/mod_donothing copying pysph/sph/bc/mod_donothing/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/mod_donothing copying pysph/sph/bc/mod_donothing/outlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/mod_donothing copying pysph/sph/bc/mod_donothing/simple_inlet_outlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/mod_donothing creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/characteristic copying pysph/sph/bc/characteristic/inlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/characteristic copying pysph/sph/bc/characteristic/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/characteristic copying pysph/sph/bc/characteristic/outlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/characteristic copying pysph/sph/bc/characteristic/simple_inlet_outlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/characteristic creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/tests copying pysph/sph/bc/tests/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/tests copying pysph/sph/bc/tests/test_simple_inlet_outlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/tests creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/mirror copying pysph/sph/bc/mirror/inlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/mirror copying pysph/sph/bc/mirror/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/mirror copying pysph/sph/bc/mirror/outlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/mirror copying pysph/sph/bc/mirror/simple_inlet_outlet.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc/mirror creating /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests copying pysph/parallel/tests/test_openmp.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests copying pysph/parallel/tests/__init__.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests copying pysph/parallel/tests/test_parallel_run.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests copying pysph/parallel/tests/example_test_case.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests copying pysph/parallel/tests/simple_reduction.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests copying pysph/parallel/tests/cavity.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests copying pysph/parallel/tests/test_parallel.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests copying pysph/parallel/tests/check_dump_load.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests copying pysph/parallel/tests/remote_exchange.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests copying pysph/parallel/tests/elliptical_drop.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests copying pysph/parallel/tests/summation_density.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests copying pysph/parallel/tests/lb_exchange.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests copying pysph/parallel/tests/reduce_array.py -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests running egg_info creating PySPH.egg-info writing PySPH.egg-info/PKG-INFO writing dependency_links to PySPH.egg-info/dependency_links.txt writing entry points to PySPH.egg-info/entry_points.txt writing requirements to PySPH.egg-info/requires.txt writing top-level names to PySPH.egg-info/top_level.txt writing manifest file 'PySPH.egg-info/SOURCES.txt' reading manifest file 'PySPH.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.bat' warning: no files found matching '*.sh' warning: no files found matching '*.toml' warning: no files found matching '*.txt.gz' under directory 'pysph' writing manifest file 'PySPH.egg-info/SOURCES.txt' copying pysph/tools/geometry_stl.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools copying pysph/base/box_sort_nnps.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/box_sort_nnps.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/c_kernels.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/c_kernels.pyx.mako -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/cell_indexing_nnps.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/cell_indexing_nnps.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/gpu_helper_functions.mako -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/gpu_nnps_base.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/gpu_nnps_base.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/linalg3.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/linalg3.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/linked_list_nnps.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/linked_list_nnps.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/nnps_base.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/nnps_base.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/octree.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/octree.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/octree_gpu_nnps.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/octree_gpu_nnps.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/octree_nnps.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/octree_nnps.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/particle_array.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/particle_array.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/point.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/point.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/spatial_hash.h -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/spatial_hash_nnps.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/spatial_hash_nnps.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/stratified_hash_nnps.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/stratified_hash_nnps.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/stratified_sfc_gpu_nnps.mako -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/stratified_sfc_gpu_nnps.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/stratified_sfc_gpu_nnps.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/stratified_sfc_nnps.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/stratified_sfc_nnps.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/z_order.h -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/z_order_gpu_nnps.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/z_order_gpu_nnps.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/z_order_nnps.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/base/z_order_nnps.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base copying pysph/sph/acceleration_eval_cython.mako -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/acceleration_eval_gpu.mako -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/sph/integrator_cython.mako -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph copying pysph/parallel/parallel_manager.pxd -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel copying pysph/parallel/parallel_manager.pyx -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel copying pysph/examples/gas_dynamics/ndspmhd-sedov-initial-conditions.npz -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/gas_dynamics copying pysph/examples/sphysics/INDAT.gz -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/sphysics/IPART.gz -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/sphysics copying pysph/examples/rigid_body/sph.vtk.gz -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/rigid_body copying pysph/base/tree/point_tree.mako -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tree copying pysph/base/tree/tree.mako -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/tree copying pysph/sph/bc/interpolate.py.mako -> /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/bc running build_ext building 'pysph.base.particle_array' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/pysph creating build/temp.linux-x86_64-3.9/pysph/base x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/base/particle_array.cpp -o build/temp.linux-x86_64-3.9/pysph/base/particle_array.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/base/particle_array.cpp:645: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/base/particle_array.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/particle_array.cpython-39-x86_64-linux-gnu.so building 'pysph.base.point' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/base/point.cpp -o build/temp.linux-x86_64-3.9/pysph/base/point.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/base/point.cpp:645: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/base/point.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/point.cpython-39-x86_64-linux-gnu.so building 'pysph.base.nnps_base' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/base/nnps_base.cpp -o build/temp.linux-x86_64-3.9/pysph/base/nnps_base.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/base/nnps_base.cpp:655: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ pysph/base/nnps_base.cpp: In function ‘int __pyx_pf_5pysph_4base_9nnps_base_13NeighborCache___init__(__pyx_obj_5pysph_4base_9nnps_base_NeighborCache*, __pyx_obj_5pysph_4base_9nnps_base_NNPS*, int, int)’: pysph/base/nnps_base.cpp:21498:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 21498 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/nnps_base.cpp:21583:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 21583 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_8; __pyx_t_7+=1) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/nnps_base.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_9nnps_base_13NeighborCache_update(__pyx_obj_5pysph_4base_9nnps_base_NeighborCache*, int)’: pysph/base/nnps_base.cpp:22494:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 22494 | for (__pyx_t_8 = 0; __pyx_t_8 < __pyx_t_7; __pyx_t_8+=1) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/nnps_base.cpp:22543:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 22543 | for (__pyx_t_8 = 0; __pyx_t_8 < __pyx_t_9; __pyx_t_8+=1) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/nnps_base.cpp: In function ‘void __pyx_f_5pysph_4base_9nnps_base_4NNPS__sort_neighbors(__pyx_obj_5pysph_4base_9nnps_base_NNPS*, unsigned int*, size_t, unsigned int*)’: pysph/base/nnps_base.cpp:28615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28615 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/nnps_base.cpp:28646:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28646 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/nnps_base.cpp:28699:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28699 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/nnps_base.cpp:28757:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28757 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/nnps_base.cpp: In function ‘int __Pyx_InitGlobals()’: pysph/base/nnps_base.cpp:41916:20: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 41916 | PyEval_InitThreads(); | ^ In file included from /usr/include/python3.9/Python.h:145, from pysph/base/nnps_base.cpp:35: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/base/nnps_base.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/nnps_base.cpython-39-x86_64-linux-gnu.so -fopenmp building 'pysph.base.linked_list_nnps' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/base/linked_list_nnps.cpp -o build/temp.linux-x86_64-3.9/pysph/base/linked_list_nnps.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/base/linked_list_nnps.cpp:671: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ pysph/base/linked_list_nnps.cpp: In function ‘int __Pyx_InitGlobals()’: pysph/base/linked_list_nnps.cpp:13411:20: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 13411 | PyEval_InitThreads(); | ^ In file included from /usr/include/python3.9/Python.h:145, from pysph/base/linked_list_nnps.cpp:33: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/base/linked_list_nnps.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/linked_list_nnps.cpython-39-x86_64-linux-gnu.so -fopenmp building 'pysph.base.box_sort_nnps' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/base/box_sort_nnps.cpp -o build/temp.linux-x86_64-3.9/pysph/base/box_sort_nnps.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/base/box_sort_nnps.cpp:672: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ pysph/base/box_sort_nnps.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_13box_sort_nnps_15DictBoxSortNNPS_get_nearest_particles_no_cache(__pyx_obj_5pysph_4base_13box_sort_nnps_DictBoxSortNNPS*, int, int, size_t, __pyx_obj_7cyarray_6carray_UIntArray*, int, int)’: pysph/base/box_sort_nnps.cpp:5843:43: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 5843 | for (__pyx_t_19 = 0; __pyx_t_19 < __pyx_t_18; __pyx_t_19+=1) { | ~~~~~~~~~~~^~~~~~~~~~~~ pysph/base/box_sort_nnps.cpp: In function ‘int __Pyx_InitGlobals()’: pysph/base/box_sort_nnps.cpp:14350:20: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 14350 | PyEval_InitThreads(); | ^ In file included from /usr/include/python3.9/Python.h:145, from pysph/base/box_sort_nnps.cpp:35: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/base/box_sort_nnps.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/box_sort_nnps.cpython-39-x86_64-linux-gnu.so -fopenmp building 'pysph.base.spatial_hash_nnps' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipysph/base -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/base/spatial_hash_nnps.cpp -o build/temp.linux-x86_64-3.9/pysph/base/spatial_hash_nnps.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/base/spatial_hash_nnps.cpp:660: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ pysph/base/spatial_hash_nnps.cpp: In function ‘void __pyx_f_5pysph_4base_17spatial_hash_nnps_15SpatialHashNNPS_find_nearest_neighbors(__pyx_obj_5pysph_4base_17spatial_hash_nnps_SpatialHashNNPS*, size_t, __pyx_obj_7cyarray_6carray_UIntArray*)’: pysph/base/spatial_hash_nnps.cpp:4562:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 4562 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_4; __pyx_v_i++) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/spatial_hash_nnps.cpp:4627:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 4627 | for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_6; __pyx_v_j++) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/spatial_hash_nnps.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_17spatial_hash_nnps_15SpatialHashNNPS__bin(__pyx_obj_5pysph_4base_17spatial_hash_nnps_SpatialHashNNPS*, int, __pyx_obj_7cyarray_6carray_UIntArray*, int)’: pysph/base/spatial_hash_nnps.cpp:5293:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5293 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_6; __pyx_v_i++) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/spatial_hash_nnps.cpp: In function ‘void __pyx_f_5pysph_4base_17spatial_hash_nnps_23ExtendedSpatialHashNNPS_find_nearest_neighbors(__pyx_obj_5pysph_4base_17spatial_hash_nnps_ExtendedSpatialHashNNPS*, size_t, __pyx_obj_7cyarray_6carray_UIntArray*)’: pysph/base/spatial_hash_nnps.cpp:7061:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 7061 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_4; __pyx_v_i++) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/spatial_hash_nnps.cpp:7126:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 7126 | for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_6; __pyx_v_j++) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/spatial_hash_nnps.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_17spatial_hash_nnps_23ExtendedSpatialHashNNPS__bin(__pyx_obj_5pysph_4base_17spatial_hash_nnps_ExtendedSpatialHashNNPS*, int, __pyx_obj_7cyarray_6carray_UIntArray*, int)’: pysph/base/spatial_hash_nnps.cpp:8304:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 8304 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_6; __pyx_v_i++) { | ~~~~~~~~~~^~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/base/spatial_hash_nnps.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/spatial_hash_nnps.cpython-39-x86_64-linux-gnu.so -fopenmp building 'pysph.base.cell_indexing_nnps' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/base/cell_indexing_nnps.cpp -o build/temp.linux-x86_64-3.9/pysph/base/cell_indexing_nnps.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/base/cell_indexing_nnps.cpp:670: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ pysph/base/cell_indexing_nnps.cpp: In function ‘void __pyx_f_5pysph_4base_18cell_indexing_nnps_16CellIndexingNNPS_find_nearest_neighbors(__pyx_obj_5pysph_4base_18cell_indexing_nnps_CellIndexingNNPS*, size_t, __pyx_obj_7cyarray_6carray_UIntArray*)’: pysph/base/cell_indexing_nnps.cpp:4668:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_5pysph_4base_18cell_indexing_nnps_u_int’ {aka ‘unsigned int’} [-Wsign-compare] 4668 | for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_7; __pyx_v_j++) { | ~~~~~~~~~~^~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/base/cell_indexing_nnps.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/cell_indexing_nnps.cpython-39-x86_64-linux-gnu.so -fopenmp building 'pysph.base.z_order_nnps' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipysph/base -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/base/z_order_nnps.cpp -o build/temp.linux-x86_64-3.9/pysph/base/z_order_nnps.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/base/z_order_nnps.cpp:672: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ pysph/base/z_order_nnps.cpp: In function ‘void __pyx_f_5pysph_4base_12z_order_nnps_10ZOrderNNPS_find_nearest_neighbors(__pyx_obj_5pysph_4base_12z_order_nnps_ZOrderNNPS*, size_t, __pyx_obj_7cyarray_6carray_UIntArray*)’: pysph/base/z_order_nnps.cpp:4651:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 4651 | for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_7; __pyx_v_j++) { | ~~~~~~~~~~^~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/base/z_order_nnps.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/z_order_nnps.cpython-39-x86_64-linux-gnu.so -fopenmp building 'pysph.base.stratified_hash_nnps' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipysph/base -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/base/stratified_hash_nnps.cpp -o build/temp.linux-x86_64-3.9/pysph/base/stratified_hash_nnps.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/base/stratified_hash_nnps.cpp:660: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ pysph/base/stratified_hash_nnps.cpp: In function ‘void __pyx_f_5pysph_4base_20stratified_hash_nnps_18StratifiedHashNNPS_find_nearest_neighbors(__pyx_obj_5pysph_4base_20stratified_hash_nnps_StratifiedHashNNPS*, size_t, __pyx_obj_7cyarray_6carray_UIntArray*)’: pysph/base/stratified_hash_nnps.cpp:5108:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5108 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_4; __pyx_v_i++) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/stratified_hash_nnps.cpp:5236:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5236 | for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_6; __pyx_v_j++) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/stratified_hash_nnps.cpp:5301:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5301 | for (__pyx_v_k = 0; __pyx_v_k < __pyx_t_7; __pyx_v_k++) { | ~~~~~~~~~~^~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/base/stratified_hash_nnps.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/stratified_hash_nnps.cpython-39-x86_64-linux-gnu.so -fopenmp building 'pysph.base.stratified_sfc_nnps' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipysph/base -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/base/stratified_sfc_nnps.cpp -o build/temp.linux-x86_64-3.9/pysph/base/stratified_sfc_nnps.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/base/stratified_sfc_nnps.cpp:675: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ pysph/base/stratified_sfc_nnps.cpp: In function ‘void __pyx_f_5pysph_4base_19stratified_sfc_nnps_17StratifiedSFCNNPS_find_nearest_neighbors(__pyx_obj_5pysph_4base_19stratified_sfc_nnps_StratifiedSFCNNPS*, size_t, __pyx_obj_7cyarray_6carray_UIntArray*)’: pysph/base/stratified_sfc_nnps.cpp:5188:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5188 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_4; __pyx_v_i++) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/stratified_sfc_nnps.cpp:5279:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5279 | for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_5; __pyx_v_j++) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/stratified_sfc_nnps.cpp:5356:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5356 | for (__pyx_v_k = 0; __pyx_v_k < __pyx_t_9; __pyx_v_k++) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/stratified_sfc_nnps.cpp: In function ‘int __pyx_f_5pysph_4base_19stratified_sfc_nnps_17StratifiedSFCNNPS_get_number_of_particles(__pyx_obj_5pysph_4base_19stratified_sfc_nnps_StratifiedSFCNNPS*, int, int, int)’: pysph/base/stratified_sfc_nnps.cpp:5674:85: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 5674 | __pyx_t_9 = ((((__pyx_v_current_keys[__pyx_v_i]) >> __pyx_v_self->max_num_bits) != __pyx_v_level) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/base/stratified_sfc_nnps.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/stratified_sfc_nnps.cpython-39-x86_64-linux-gnu.so -fopenmp building 'pysph.base.octree' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/base/octree.cpp -o build/temp.linux-x86_64-3.9/pysph/base/octree.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/base/octree.cpp:653: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ pysph/base/octree.cpp: In function ‘int __pyx_f_5pysph_4base_6octree_6Octree__c_build_tree(__pyx_obj_5pysph_4base_6octree_Octree*, __pyx_obj_5pysph_4base_9nnps_base_NNPSParticleArrayWrapper*, std::vector*, double*, double, __pyx_t_5pysph_4base_6octree_cOctreeNode*, int)’: pysph/base/octree.cpp:6952:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 6952 | __pyx_t_3 = ((__pyx_v_indices->size() < __pyx_v_self->leaf_max_particles) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/octree.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_6octree_6Octree_get_leaf_cells(__pyx_obj_5pysph_4base_6octree_Octree*, int)’: pysph/base/octree.cpp:8640:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<__pyx_t_5pysph_4base_6octree_cOctreeNode*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 8640 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/octree.cpp:8658:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<__pyx_t_5pysph_4base_6octree_cOctreeNode*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 8658 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_5; __pyx_v_i++) { | ~~~~~~~~~~^~~~~~~~~~~ pysph/base/octree.cpp: In function ‘int __pyx_f_5pysph_4base_6octree_16CompressedOctree__c_build_tree(__pyx_obj_5pysph_4base_6octree_CompressedOctree*, __pyx_obj_5pysph_4base_9nnps_base_NNPSParticleArrayWrapper*, std::vector*, double*, double, __pyx_t_5pysph_4base_6octree_cOctreeNode*, int)’: pysph/base/octree.cpp:10081:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 10081 | __pyx_t_3 = ((__pyx_v_indices->size() < __pyx_v_self->__pyx_base.leaf_max_particles) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/base/octree.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/octree.cpython-39-x86_64-linux-gnu.so -fopenmp building 'pysph.base.octree_nnps' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/base/octree_nnps.cpp -o build/temp.linux-x86_64-3.9/pysph/base/octree_nnps.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/base/octree_nnps.cpp:655: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ pysph/base/octree_nnps.cpp: In function ‘void __pyx_f_5pysph_4base_11octree_nnps_10OctreeNNPS__get_neighbors(__pyx_obj_5pysph_4base_11octree_nnps_OctreeNNPS*, double, double, double, double, double*, double*, double*, double*, __pyx_obj_7cyarray_6carray_UIntArray*, __pyx_t_5pysph_4base_6octree_cOctreeNode*)’: pysph/base/octree_nnps.cpp:4517:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5pysph_4base_11octree_nnps_u_int’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 4517 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_3; __pyx_v_i++) { | ~~~~~~~~~~^~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/base/octree_nnps.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/octree_nnps.cpython-39-x86_64-linux-gnu.so -fopenmp building 'pysph.base.c_kernels' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/base/c_kernels.cpp -o build/temp.linux-x86_64-3.9/pysph/base/c_kernels.o pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_11CubicSpline_dwdq(__pyx_obj_5pysph_4base_9c_kernels_CubicSpline*, double, double)’: pysph/base/c_kernels.cpp:3937:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3937 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_11CubicSpline_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_CubicSpline*, double*, double, double)’: pysph/base/c_kernels.cpp:5029:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5029 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_11CubicSpline_kernel(__pyx_obj_5pysph_4base_9c_kernels_CubicSpline*, double*, double, double)’: pysph/base/c_kernels.cpp:5516:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5516 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_15WendlandQuintic_dwdq(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuintic*, double, double)’: pysph/base/c_kernels.cpp:8266:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8266 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_15WendlandQuintic_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuintic*, double*, double, double)’: pysph/base/c_kernels.cpp:9316:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9316 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_15WendlandQuintic_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuintic*, double*, double, double)’: pysph/base/c_kernels.cpp:9770:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9770 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_8Gaussian_dwdq(__pyx_obj_5pysph_4base_9c_kernels_Gaussian*, double, double)’: pysph/base/c_kernels.cpp:12510:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 12510 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_8Gaussian_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_Gaussian*, double*, double, double)’: pysph/base/c_kernels.cpp:13550:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 13550 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_8Gaussian_kernel(__pyx_obj_5pysph_4base_9c_kernels_Gaussian*, double*, double, double)’: pysph/base/c_kernels.cpp:13976:17: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 13976 | __pyx_v_val = (exp(((-__pyx_v_q) * __pyx_v_q)) * __pyx_v_fac); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_13QuinticSpline_dwdq(__pyx_obj_5pysph_4base_9c_kernels_QuinticSpline*, double, double)’: pysph/base/c_kernels.cpp:16866:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 16866 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_13QuinticSpline_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_QuinticSpline*, double*, double, double)’: pysph/base/c_kernels.cpp:18070:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 18070 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_13QuinticSpline_kernel(__pyx_obj_5pysph_4base_9c_kernels_QuinticSpline*, double*, double, double)’: pysph/base/c_kernels.cpp:18633:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 18633 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_13SuperGaussian_dwdq(__pyx_obj_5pysph_4base_9c_kernels_SuperGaussian*, double, double)’: pysph/base/c_kernels.cpp:21383:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 21383 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_13SuperGaussian_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_SuperGaussian*, double*, double, double)’: pysph/base/c_kernels.cpp:22497:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 22497 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * __pyx_v_val); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_13SuperGaussian_kernel(__pyx_obj_5pysph_4base_9c_kernels_SuperGaussian*, double*, double, double)’: pysph/base/c_kernels.cpp:22933:17: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 22933 | __pyx_v_val = ((exp((-__pyx_v_q2)) * ((1.0 + (__pyx_v_self->dim * 0.5)) - __pyx_v_q2)) * __pyx_v_fac); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC4_dwdq(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4*, double, double)’: pysph/base/c_kernels.cpp:25701:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 25701 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC4_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4*, double*, double, double)’: pysph/base/c_kernels.cpp:26751:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 26751 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC4_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4*, double*, double, double)’: pysph/base/c_kernels.cpp:27205:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 27205 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC6_dwdq(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6*, double, double)’: pysph/base/c_kernels.cpp:29955:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 29955 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC6_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6*, double*, double, double)’: pysph/base/c_kernels.cpp:31005:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 31005 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC6_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6*, double*, double, double)’: pysph/base/c_kernels.cpp:31459:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 31459 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC2_1D_dwdq(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC2_1D*, double, double)’: pysph/base/c_kernels.cpp:34209:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 34209 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC2_1D_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC2_1D*, double*, double, double)’: pysph/base/c_kernels.cpp:35259:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 35259 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC2_1D_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC2_1D*, double*, double, double)’: pysph/base/c_kernels.cpp:35713:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 35713 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC4_1D_dwdq(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4_1D*, double, double)’: pysph/base/c_kernels.cpp:38463:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 38463 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC4_1D_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4_1D*, double*, double, double)’: pysph/base/c_kernels.cpp:39513:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 39513 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC4_1D_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4_1D*, double*, double, double)’: pysph/base/c_kernels.cpp:39967:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 39967 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC6_1D_dwdq(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6_1D*, double, double)’: pysph/base/c_kernels.cpp:42717:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 42717 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC6_1D_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6_1D*, double*, double, double)’: pysph/base/c_kernels.cpp:43767:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 43767 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC6_1D_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6_1D*, double*, double, double)’: pysph/base/c_kernels.cpp:44221:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 44221 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘void __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC2_1D_gradient(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC2_1D*, double*, double, double, double*)’: pysph/base/c_kernels.cpp:34209:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 34209 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:34034:10: note: ‘__pyx_v_fac’ was declared here 34034 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘void __pyx_f_5pysph_4base_9c_kernels_15WendlandQuintic_gradient(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuintic*, double*, double, double, double*)’: pysph/base/c_kernels.cpp:8266:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8266 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:8091:10: note: ‘__pyx_v_fac’ was declared here 8091 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘void __pyx_f_5pysph_4base_9c_kernels_8Gaussian_gradient(__pyx_obj_5pysph_4base_9c_kernels_Gaussian*, double*, double, double, double*)’: pysph/base/c_kernels.cpp:12510:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 12510 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:12345:10: note: ‘__pyx_v_fac’ was declared here 12345 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘void __pyx_f_5pysph_4base_9c_kernels_11CubicSpline_gradient(__pyx_obj_5pysph_4base_9c_kernels_CubicSpline*, double*, double, double, double*)’: pysph/base/c_kernels.cpp:3937:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3937 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:3716:10: note: ‘__pyx_v_fac’ was declared here 3716 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘void __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC4_1D_gradient(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4_1D*, double*, double, double, double*)’: pysph/base/c_kernels.cpp:38463:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 38463 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:38288:10: note: ‘__pyx_v_fac’ was declared here 38288 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘void __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC4_gradient(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4*, double*, double, double, double*)’: pysph/base/c_kernels.cpp:25701:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 25701 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:25526:10: note: ‘__pyx_v_fac’ was declared here 25526 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘void __pyx_f_5pysph_4base_9c_kernels_13SuperGaussian_gradient(__pyx_obj_5pysph_4base_9c_kernels_SuperGaussian*, double*, double, double, double*)’: pysph/base/c_kernels.cpp:21383:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 21383 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:21208:10: note: ‘__pyx_v_fac’ was declared here 21208 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘void __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC6_1D_gradient(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6_1D*, double*, double, double, double*)’: pysph/base/c_kernels.cpp:42717:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 42717 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:42542:10: note: ‘__pyx_v_fac’ was declared here 42542 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘void __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC6_gradient(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6*, double*, double, double, double*)’: pysph/base/c_kernels.cpp:29955:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 29955 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:29780:10: note: ‘__pyx_v_fac’ was declared here 29780 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘void __pyx_f_5pysph_4base_9c_kernels_13QuinticSpline_gradient(__pyx_obj_5pysph_4base_9c_kernels_QuinticSpline*, double*, double, double, double*)’: pysph/base/c_kernels.cpp:16866:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 16866 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:16569:10: note: ‘__pyx_v_fac’ was declared here 16569 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_8Gaussian_py_kernel(__pyx_obj_5pysph_4base_9c_kernels_Gaussian*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:13976:17: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 13976 | __pyx_v_val = (exp(((-__pyx_v_q) * __pyx_v_q)) * __pyx_v_fac); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:13848:10: note: ‘__pyx_v_fac’ was declared here 13848 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC2_1D_py_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC2_1D*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:35713:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 35713 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:35557:10: note: ‘__pyx_v_fac’ was declared here 35557 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_15WendlandQuintic_py_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuintic*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:9770:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9770 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:9614:10: note: ‘__pyx_v_fac’ was declared here 9614 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_13SuperGaussian_py_kernel(__pyx_obj_5pysph_4base_9c_kernels_SuperGaussian*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:22933:17: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 22933 | __pyx_v_val = ((exp((-__pyx_v_q2)) * ((1.0 + (__pyx_v_self->dim * 0.5)) - __pyx_v_q2)) * __pyx_v_fac); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:22795:10: note: ‘__pyx_v_fac’ was declared here 22795 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_11CubicSpline_py_kernel(__pyx_obj_5pysph_4base_9c_kernels_CubicSpline*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:5516:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5516 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:5327:10: note: ‘__pyx_v_fac’ was declared here 5327 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC4_1D_py_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4_1D*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:39967:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 39967 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:39811:10: note: ‘__pyx_v_fac’ was declared here 39811 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC4_py_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:27205:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 27205 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:27049:10: note: ‘__pyx_v_fac’ was declared here 27049 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_8Gaussian_py_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_Gaussian*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:13550:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 13550 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp:13386:10: note: ‘__pyx_v_fac’ was declared here 13386 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC2_1D_py_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC2_1D*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:35259:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 35259 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp:35085:10: note: ‘__pyx_v_fac’ was declared here 35085 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC6_py_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:31459:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 31459 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:31303:10: note: ‘__pyx_v_fac’ was declared here 31303 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC6_1D_py_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6_1D*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:44221:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 44221 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:44065:10: note: ‘__pyx_v_fac’ was declared here 44065 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_15WendlandQuintic_py_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuintic*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:9316:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9316 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp:9142:10: note: ‘__pyx_v_fac’ was declared here 9142 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_13SuperGaussian_py_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_SuperGaussian*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:22497:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 22497 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * __pyx_v_val); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp:22311:10: note: ‘__pyx_v_fac’ was declared here 22311 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_11CubicSpline_py_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_CubicSpline*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:5029:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5029 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp:4813:10: note: ‘__pyx_v_fac’ was declared here 4813 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC4_1D_py_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4_1D*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:39513:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 39513 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp:39339:10: note: ‘__pyx_v_fac’ was declared here 39339 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC4_py_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:26751:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 26751 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp:26577:10: note: ‘__pyx_v_fac’ was declared here 26577 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC6_py_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:31005:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 31005 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp:30831:10: note: ‘__pyx_v_fac’ was declared here 30831 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC6_1D_py_gradient_h(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6_1D*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:43767:16: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 43767 | __pyx_r = (((-__pyx_v_fac) * __pyx_v_h1) * ((__pyx_v_dw * __pyx_v_q) + (__pyx_v_w * __pyx_v_self->dim))); | ~^~~~~~~~~~~~~ pysph/base/c_kernels.cpp:43593:10: note: ‘__pyx_v_fac’ was declared here 43593 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_13QuinticSpline_py_kernel(__pyx_obj_5pysph_4base_9c_kernels_QuinticSpline*, __Pyx_memviewslice, double, double, int)’: pysph/base/c_kernels.cpp:18633:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 18633 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:18368:10: note: ‘__pyx_v_fac’ was declared here 18368 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC2_1D_py_gradient(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC2_1D*, __Pyx_memviewslice, double, double, __Pyx_memviewslice, int)’: pysph/base/c_kernels.cpp:34209:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 34209 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:34034:10: note: ‘__pyx_v_fac’ was declared here 34034 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_9c_kernels_15WendlandQuintic_py_gradient(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuintic*, __Pyx_memviewslice, double, double, __Pyx_memviewslice, int)’: pysph/base/c_kernels.cpp:8266:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8266 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:8091:10: note: ‘__pyx_v_fac’ was declared here 8091 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC6_1D_py_gradient(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6_1D*, __Pyx_memviewslice, double, double, __Pyx_memviewslice, int)’: pysph/base/c_kernels.cpp:42717:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 42717 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:42542:10: note: ‘__pyx_v_fac’ was declared here 42542 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC6_py_gradient(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6*, __Pyx_memviewslice, double, double, __Pyx_memviewslice, int)’: pysph/base/c_kernels.cpp:29955:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 29955 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:29780:10: note: ‘__pyx_v_fac’ was declared here 29780 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_9c_kernels_13QuinticSpline_py_gradient(__pyx_obj_5pysph_4base_9c_kernels_QuinticSpline*, __Pyx_memviewslice, double, double, __Pyx_memviewslice, int)’: pysph/base/c_kernels.cpp:16866:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 16866 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:16569:10: note: ‘__pyx_v_fac’ was declared here 16569 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_9c_kernels_27WendlandQuinticC2_1DWrapper_gradient(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC2_1DWrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:34209:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 34209 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:34034:10: note: ‘__pyx_v_fac’ was declared here 34034 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_9c_kernels_22WendlandQuinticWrapper_gradient(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticWrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:8266:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8266 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:8091:10: note: ‘__pyx_v_fac’ was declared here 8091 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_9c_kernels_27WendlandQuinticC6_1DWrapper_gradient(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6_1DWrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:42717:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 42717 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:42542:10: note: ‘__pyx_v_fac’ was declared here 42542 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_9c_kernels_24WendlandQuinticC6Wrapper_gradient(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6Wrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:29955:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 29955 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:29780:10: note: ‘__pyx_v_fac’ was declared here 29780 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘PyObject* __pyx_f_5pysph_4base_9c_kernels_20QuinticSplineWrapper_gradient(__pyx_obj_5pysph_4base_9c_kernels_QuinticSplineWrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:16866:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 16866 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:16569:10: note: ‘__pyx_v_fac’ was declared here 16569 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_15WendlandQuintic_py_dwdq(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuintic*, double, double, int)’: pysph/base/c_kernels.cpp:8266:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8266 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:8091:10: note: ‘__pyx_v_fac’ was declared here 8091 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_8Gaussian_py_dwdq(__pyx_obj_5pysph_4base_9c_kernels_Gaussian*, double, double, int)’: pysph/base/c_kernels.cpp:12510:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 12510 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:12345:10: note: ‘__pyx_v_fac’ was declared here 12345 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_11CubicSpline_py_dwdq(__pyx_obj_5pysph_4base_9c_kernels_CubicSpline*, double, double, int)’: pysph/base/c_kernels.cpp:3937:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3937 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:3716:10: note: ‘__pyx_v_fac’ was declared here 3716 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC4_1D_py_dwdq(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4_1D*, double, double, int)’: pysph/base/c_kernels.cpp:38463:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 38463 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:38288:10: note: ‘__pyx_v_fac’ was declared here 38288 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC4_py_dwdq(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4*, double, double, int)’: pysph/base/c_kernels.cpp:25701:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 25701 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:25526:10: note: ‘__pyx_v_fac’ was declared here 25526 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_13SuperGaussian_py_dwdq(__pyx_obj_5pysph_4base_9c_kernels_SuperGaussian*, double, double, int)’: pysph/base/c_kernels.cpp:21383:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 21383 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:21208:10: note: ‘__pyx_v_fac’ was declared here 21208 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC6_1D_py_dwdq(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6_1D*, double, double, int)’: pysph/base/c_kernels.cpp:42717:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 42717 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:42542:10: note: ‘__pyx_v_fac’ was declared here 42542 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_17WendlandQuinticC6_py_dwdq(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6*, double, double, int)’: pysph/base/c_kernels.cpp:29955:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 29955 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:29780:10: note: ‘__pyx_v_fac’ was declared here 29780 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_13QuinticSpline_py_dwdq(__pyx_obj_5pysph_4base_9c_kernels_QuinticSpline*, double, double, int)’: pysph/base/c_kernels.cpp:16866:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 16866 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:16569:10: note: ‘__pyx_v_fac’ was declared here 16569 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_15GaussianWrapper_kernel(__pyx_obj_5pysph_4base_9c_kernels_GaussianWrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:13976:17: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 13976 | __pyx_v_val = (exp(((-__pyx_v_q) * __pyx_v_q)) * __pyx_v_fac); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:13848:10: note: ‘__pyx_v_fac’ was declared here 13848 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_27WendlandQuinticC2_1DWrapper_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC2_1DWrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:35713:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 35713 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:35557:10: note: ‘__pyx_v_fac’ was declared here 35557 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_22WendlandQuinticWrapper_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticWrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:9770:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9770 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:9614:10: note: ‘__pyx_v_fac’ was declared here 9614 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20SuperGaussianWrapper_kernel(__pyx_obj_5pysph_4base_9c_kernels_SuperGaussianWrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:22933:17: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 22933 | __pyx_v_val = ((exp((-__pyx_v_q2)) * ((1.0 + (__pyx_v_self->dim * 0.5)) - __pyx_v_q2)) * __pyx_v_fac); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:22795:10: note: ‘__pyx_v_fac’ was declared here 22795 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_18CubicSplineWrapper_kernel(__pyx_obj_5pysph_4base_9c_kernels_CubicSplineWrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:5516:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5516 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:5327:10: note: ‘__pyx_v_fac’ was declared here 5327 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_27WendlandQuinticC4_1DWrapper_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4_1DWrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:39967:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 39967 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:39811:10: note: ‘__pyx_v_fac’ was declared here 39811 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_24WendlandQuinticC4Wrapper_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC4Wrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:27205:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 27205 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:27049:10: note: ‘__pyx_v_fac’ was declared here 27049 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_27WendlandQuinticC6_1DWrapper_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6_1DWrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:44221:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 44221 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:44065:10: note: ‘__pyx_v_fac’ was declared here 44065 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_24WendlandQuinticC6Wrapper_kernel(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC6Wrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:31459:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 31459 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:31303:10: note: ‘__pyx_v_fac’ was declared here 31303 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20QuinticSplineWrapper_kernel(__pyx_obj_5pysph_4base_9c_kernels_QuinticSplineWrapper*, double, double, double, double, double, double, double, int)’: pysph/base/c_kernels.cpp:18633:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 18633 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:18368:10: note: ‘__pyx_v_fac’ was declared here 18368 | double __pyx_v_fac; | ^~~~~~~~~~~ pysph/base/c_kernels.cpp: In function ‘double __pyx_f_5pysph_4base_9c_kernels_20WendlandQuinticC2_1D_py_dwdq(__pyx_obj_5pysph_4base_9c_kernels_WendlandQuinticC2_1D*, double, double, int)’: pysph/base/c_kernels.cpp:34209:11: warning: ‘__pyx_v_fac’ may be used uninitialized in this function [-Wmaybe-uninitialized] 34209 | __pyx_r = (__pyx_v_val * __pyx_v_fac); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysph/base/c_kernels.cpp:34034:10: note: ‘__pyx_v_fac’ was declared here 34034 | double __pyx_v_fac; | ^~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/base/c_kernels.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/c_kernels.cpython-39-x86_64-linux-gnu.so building 'pysph.base.linalg3' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/base/linalg3.cpp -o build/temp.linux-x86_64-3.9/pysph/base/linalg3.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/base/linalg3.cpp:646: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/base/linalg3.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/base/linalg3.cpython-39-x86_64-linux-gnu.so building 'pysph.tools.geometry_stl' extension creating build/temp.linux-x86_64-3.9/pysph/tools x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/include/python3.9 -c pysph/tools/geometry_stl.cpp -o build/temp.linux-x86_64-3.9/pysph/tools/geometry_stl.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/tools/geometry_stl.cpp:645: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/tools/geometry_stl.o -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools/geometry_stl.cpython-39-x86_64-linux-gnu.so building 'pysph.parallel.parallel_manager' extension creating build/temp.linux-x86_64-3.9/pysph/parallel x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-euU3fN/python3.9-3.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/local/include/ -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/include/trilinos -I/usr/lib/python3/dist-packages/pyzoltan/czoltan -I/usr/include/python3.9 -c pysph/parallel/parallel_manager.cpp -o build/temp.linux-x86_64-3.9/pysph/parallel/parallel_manager.o -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -pthread In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from pysph/parallel/parallel_manager.cpp:675: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ pysph/parallel/parallel_manager.cpp: In function ‘PyObject* __pyx_f_5pysph_8parallel_16parallel_manager_15ParallelManager_get_nearest_particles(__pyx_obj_5pysph_8parallel_16parallel_manager_ParallelManager*, int, int, size_t, __pyx_obj_7cyarray_6carray_UIntArray*, int)’: pysph/parallel/parallel_manager.cpp:17901:43: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 17901 | for (__pyx_t_18 = 0; __pyx_t_18 < __pyx_t_17; __pyx_t_18+=1) { | ~~~~~~~~~~~^~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pysph/parallel/parallel_manager.o -ltrilinos_zoltan -lmpi -o /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/parallel_manager.cpython-39-x86_64-linux-gnu.so -pthread -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi env PYTHONPATH=/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build \ python3 -m sphinx -M html /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/build -N Running Sphinx v3.4.3 making output directory... done WARNING: html_static_path entry '_static' does not exist loading intersphinx inventory from https://cyarray.readthedocs.io/en/latest/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://cyarray.readthedocs.io/en/latest/objects.inv' not fetchable due to : Not supported proxy scheme None building [mo]: targets for 0 po files that are out of date building [html]: targets for 28 source files that are out of date updating environment: [new config] 28 added, 0 changed, 0 removed reading sources... [ 3%] contribution/how_to_write_docs reading sources... [ 7%] design/equations reading sources... [ 10%] design/overview reading sources... [ 14%] design/solver_interfaces reading sources... [ 17%] design/working_with_particles reading sources... [ 21%] examples/index reading sources... [ 25%] examples/sphere_in_vessel reading sources... [ 28%] examples/taylor_green reading sources... [ 32%] index reading sources... [ 35%] installation reading sources... [ 39%] overview reading sources... [ 42%] reference/application reading sources... [ 46%] reference/controller reading sources... [ 50%] reference/equations reading sources... [ 53%] reference/index reading sources... [ 57%] reference/integrator reading sources... [ 60%] reference/kernels reading sources... [ 64%] reference/nnps reading sources... [ 67%] reference/parallel_manager reading sources... [ 71%] reference/particle_array reading sources... [ 75%] reference/scheme reading sources... [ 78%] reference/solver reading sources... [ 82%] reference/solver_interfaces reading sources... [ 85%] reference/tools reading sources... [ 89%] starcluster/overview reading sources... [ 92%] tutorial/circular_patch reading sources... [ 96%] tutorial/circular_patch_simple reading sources... [100%] using_pysph /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/installation.rst:423: WARNING: Duplicate explicit target name: "miniconda". /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/installation.rst:778: WARNING: Title level inconsistent: Issues with the pip cache -------------------------- /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/installation.rst:7: WARNING: Duplicate target name, cannot be used as a unique reference: "miniconda". /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/installation.rst:295: WARNING: Unknown target name: "conda". /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/installation.rst:407: WARNING: Duplicate target name, cannot be used as a unique reference: "miniconda". WARNING: autodoc: failed to import module 'application' from module 'pysph.solver'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import module 'controller' from module 'pysph.solver'; the following exception was raised: No module named 'pysph.base.particle_array' /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/basic_equations.py:docstring of pysph.sph.basic_equations.XSPHCorrectionForLeapFrog:13: WARNING: Duplicate explicit target name: "monaghan1992". /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/wc/basic.py:docstring of pysph.sph.wc.basic.MomentumEquation:32: WARNING: Duplicate explicit target name: "monaghan1992". /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/wc/basic.py:docstring of pysph.sph.wc.basic.MomentumEquationDeltaSPH:18: WARNING: Duplicate explicit target name: "marrone2011". /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/wc/basic.py:docstring of pysph.sph.wc.basic.TaitEOS:14: WARNING: Duplicate explicit target name: "monaghan2005". /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/wc/viscosity.py:docstring of pysph.sph.wc.viscosity.LaminarViscosityDeltaSPH:4: WARNING: Bullet list ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'gtvf' from module 'pysph.sph.wc'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import module 'crksph' from module 'pysph.sph.wc'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import module 'pcisph' from module 'pysph.sph.wc'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import module 'basic' from module 'pysph.sph.solid_mech'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import module 'basic' from module 'pysph.sph.gas_dynamics'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import module 'surface_tension' from module 'pysph.sph'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import module 'iisph' from module 'pysph.sph'; the following exception was raised: No module named 'pysph.base.particle_array' /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/basic_equations.py:docstring of pysph.sph.basic_equations.XSPHCorrectionForLeapFrog:13: WARNING: duplicate citation Monaghan1992, other instance in /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/equations.rst /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/wc/basic.py:docstring of pysph.sph.wc.basic.MomentumEquation:32: WARNING: duplicate citation Monaghan1992, other instance in /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/equations.rst /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/wc/basic.py:docstring of pysph.sph.wc.basic.MomentumEquationDeltaSPH:18: WARNING: duplicate citation Marrone2011, other instance in /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/equations.rst /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/wc/basic.py:docstring of pysph.sph.wc.basic.TaitEOS:14: WARNING: duplicate citation Monaghan2005, other instance in /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/equations.rst /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/integrator.py:docstring of pysph.sph.integrator.EPECIntegrator:26: WARNING: Inline interpreted text or phrase reference start-string without end-string. /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/base/kernels.py:docstring of pysph.base.kernels.CubicSpline:21: WARNING: duplicate citation Monaghan1992, other instance in /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/equations.rst WARNING: autodoc: failed to import module 'nnps' from module 'pysph.base'; the following exception was raised: No module named 'pysph.base.nnps_base' WARNING: autodoc: failed to import module 'nnps_base' from module 'pysph.base'; the following exception was raised: No module named 'pysph.base.nnps_base' WARNING: autodoc: failed to import module 'linked_list_nnps' from module 'pysph.base'; the following exception was raised: No module named 'pysph.base.linked_list_nnps' WARNING: autodoc: failed to import module 'box_sort_nnps' from module 'pysph.base'; the following exception was raised: No module named 'pysph.base.box_sort_nnps' WARNING: autodoc: failed to import module 'spatial_hash_nnps' from module 'pysph.base'; the following exception was raised: No module named 'pysph.base.spatial_hash_nnps' WARNING: autodoc: failed to import module 'parallel_manager' from module 'pysph.parallel'; the following exception was raised: No module named 'pysph.parallel.parallel_manager' WARNING: autodoc: failed to import module 'particle_array' from module 'pysph.base'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import module 'utils' from module 'pysph.base'; the following exception was raised: No module named 'pysph.base.particle_array' /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/scheme.py:docstring of pysph.sph.scheme.WCSPHScheme:44: WARNING: duplicate citation Hughes2010, other instance in /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/equations.rst /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/scheme.py:docstring of pysph.sph.scheme.WCSPHScheme:48: WARNING: duplicate citation Marrone2011, other instance in /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/equations.rst /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/pysph/sph/scheme.py:docstring of pysph.sph.scheme.WCSPHScheme:52: WARNING: duplicate citation Cherfils2012, other instance in /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/equations.rst WARNING: autodoc: failed to import module 'solver' from module 'pysph.solver'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import module 'inlet_outlet_manager' from module 'pysph.sph.bc'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import function 'utils.dump' from module 'pysph.solver'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import function 'utils.get_files' from module 'pysph.solver'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import function 'utils.load' from module 'pysph.solver'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import function 'utils.load_and_concatenate' from module 'pysph.solver'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import module 'interpolator' from module 'pysph.tools'; the following exception was raised: No module named 'pysph.base.particle_array' WARNING: autodoc: failed to import module 'sph_evaluator' from module 'pysph.tools'; the following exception was raised: No module named 'pysph.base.nnps_base' WARNING: autodoc: failed to import module 'mayavi_viewer' from module 'pysph.tools'; the following exception was raised: No module named 'traitsui' WARNING: autodoc: failed to import function 'geometry_stl.get_stl_surface' from module 'pysph.tools'; the following exception was raised: No module named 'pysph.tools.geometry_stl' looking for now-outdated files... none found pickling environment... done checking consistency... /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/design/working_with_particles.rst: WARNING: document isn't included in any toctree /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/scheme.rst:48: WARNING: Citation [Marrone2011] is not referenced. /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/scheme.rst:52: WARNING: Citation [Cherfils2012] is not referenced. /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/equations.rst:8: WARNING: Citation [Cole1948] is not referenced. /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/equations.rst:11: WARNING: Citation [Batchelor2002] is not referenced. /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/scheme.rst:44: WARNING: Citation [Hughes2010] is not referenced. /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/equations.rst:7: WARNING: Citation [Ferrari2009] is not referenced. /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/equations.rst:10: WARNING: Citation [Adami2013] is not referenced. /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/source/reference/equations.rst:9: WARNING: Citation [BonetLok1999] is not referenced. done preparing documents... done writing output... 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[100%] pysph.tools.gmsh writing additional pages... search done copying images... [ 8%] design/../../Images/dam-break-schematic.png copying images... [ 16%] design/images/controller.png copying images... [ 25%] design/images/html_client.png copying images... [ 33%] design/images/particle-array.png copying images... [ 41%] ../Images/pysph_viewer.png copying images... [ 50%] ../Images/ldc-streamlines.png copying images... [ 58%] ../Images/rings-collision.png copying images... [ 66%] ../Images/db3d.png copying images... [ 75%] tutorial/../../Images/pysph-examples-common-steps.png copying images... [ 83%] tutorial/../../Images/pysph_viewer.png copying images... [ 91%] ../Images/local-remote-particles.png copying images... [100%] ../Images/periodic-domain-ghost-particle-tags.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 60 warnings. The HTML pages are in docs/build/html. find /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/docs/build/html -type f -print0 | xargs --no-run-if-empty -0 sed -i 's/https:\/\/www.youtube.com//g' make[1]: Leaving directory '/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10' dh_auto_test -i -O--buildsystem=pybuild I: pybuild base:232: cd /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build; python3.9 -m pytest -k 'not test_sph_evaluator and not TestInterpolator' ============================= test session starts ============================== platform linux -- Python 3.9.1+, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 rootdir: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10, configfile: tox.ini collected 889 items / 90 deselected / 799 selected pysph/base/tests/test_device_helper.py .ss.ss.ss.ss.ss.ss.ss.ss.ss.ss.ss [ 4%] .ss.ss.ss.ss.ss.ss.sss [ 6%] pysph/base/tests/test_domain_manager.py sss......... 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[100%] =================================== FAILURES =================================== ___________________ TestOpenMPExamples.test_ldcavity_example ___________________ self = def test_ldcavity_example(self): dt=1e-4; tf=200*dt serial_kwargs = dict(timestep=dt, tf=tf, pfreq=500) extra_parallel_kwargs = dict(openmp=None) # Note that we set nprocs=1 here since we do not want # to run this with mpirun. > self.run_example( 'cavity.py', nprocs=1, atol=1e-14, serial_kwargs=serial_kwargs, extra_parallel_kwargs=extra_parallel_kwargs ) pysph/parallel/tests/test_openmp.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ pysph/parallel/tests/example_test_case.py:117: in run_example run_parallel_script.run( _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ filename = 'cavity.py' args = ['--timestep=0.0001', '--tf=0.02', '--pfreq=500', '--openmp', '--fname=cavity', '--directory=/tmp/tmpvbcqvspy'] nprocs = 1, timeout = 300 path = '/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests' def run(filename, args=None, nprocs=2, timeout=30.0, path=None): """Run a python script with MPI or in serial (if nprocs=1). Kill process if it takes longer than the specified timeout. Parameters: ----------- filename - filename of python script to run under mpi. args - List of arguments to pass to script. nprocs - number of processes to run (1 => serial non-mpi run). timeout - time in seconds to wait for the script to finish running, else raise a RuntimeError exception. path - the path under which the script is located Defaults to the location of this file (__file__), not curdir. """ if args is None: args = [] file_path = abspath(join(path, filename)) cmd = [sys.executable, file_path] + args if nprocs > 1: cmd = ['mpiexec', '-n', str(nprocs)] + cmd print('running test:', cmd) process = Popen(cmd, stdout=PIPE, stderr=PIPE) timer = Timer(timeout, kill_process, [process]) timer.start() out, err = process.communicate() timer.cancel() retcode = process.returncode if retcode: msg = 'test ' + filename + ' failed with returncode ' + str(retcode) print(out.decode('utf-8')) print(err.decode('utf-8')) print('#'*80) print(msg) print('#'*80) > raise RuntimeError(msg) E RuntimeError: test cavity.py failed with returncode -9 pysph/tools/run_parallel_script.py:54: RuntimeError ----------------------------- Captured stdout call ----------------------------- running test: ['/usr/bin/python3.9', '/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/cavity.py', '--timestep=0.0001', '--tf=0.02', '--pfreq=500', '--fname=cavity', '--directory=/tmp/tmphou9zpf1'] running test: ['/usr/bin/python3.9', '/build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/cavity.py', '--timestep=0.0001', '--tf=0.02', '--pfreq=500', '--openmp', '--fname=cavity', '--directory=/tmp/tmpvbcqvspy'] KILLING PROCESS ON TIMEOUT ################################################################################ test cavity.py failed with returncode -9 ################################################################################ =============================== warnings summary =============================== /usr/lib/python3/dist-packages/pyximport/pyximport.py:51 /usr/lib/python3/dist-packages/pyximport/pyximport.py:51: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp /usr/lib/python3/dist-packages/_pytest/mark/structures.py:335 /usr/lib/python3/dist-packages/_pytest/mark/structures.py:335: PytestCollectionWarning: cannot collect 'test_all_backends' because it is not a function. def __call__(self, *args: object, **kwargs: object): # noqa: F811 pysph/examples/tests/test_examples.py:84 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/examples/tests/test_examples.py:84: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.slow pysph/parallel/tests/test_openmp.py:17 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/test_openmp.py:17: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.slow pysph/parallel/tests/test_openmp.py:33 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/test_openmp.py:33: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.slow pysph/parallel/tests/test_parallel.py:55 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/test_parallel.py:55: PytestUnknownMarkWarning: Unknown pytest.mark.parallel - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.parallel pysph/parallel/tests/test_parallel.py:59 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/test_parallel.py:59: PytestUnknownMarkWarning: Unknown pytest.mark.parallel - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.parallel pysph/parallel/tests/test_parallel.py:72 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/test_parallel.py:72: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.slow pysph/parallel/tests/test_parallel.py:73 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/test_parallel.py:73: PytestUnknownMarkWarning: Unknown pytest.mark.parallel - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.parallel pysph/parallel/tests/test_parallel.py:92 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/test_parallel.py:92: PytestUnknownMarkWarning: Unknown pytest.mark.parallel - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.parallel pysph/parallel/tests/test_parallel.py:98 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/test_parallel.py:98: PytestUnknownMarkWarning: Unknown pytest.mark.parallel - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.parallel pysph/parallel/tests/test_parallel.py:112 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/test_parallel.py:112: PytestUnknownMarkWarning: Unknown pytest.mark.parallel - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.parallel pysph/parallel/tests/test_parallel_run.py:25 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/test_parallel_run.py:25: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.slow pysph/parallel/tests/test_parallel_run.py:26 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/test_parallel_run.py:26: PytestUnknownMarkWarning: Unknown pytest.mark.parallel - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.parallel pysph/parallel/tests/test_parallel_run.py:39 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/test_parallel_run.py:39: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.slow pysph/parallel/tests/test_parallel_run.py:40 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/test_parallel_run.py:40: PytestUnknownMarkWarning: Unknown pytest.mark.parallel - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.parallel pysph/parallel/tests/test_parallel_run.py:50 /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/parallel/tests/test_parallel_run.py:50: PytestUnknownMarkWarning: Unknown pytest.mark.parallel - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @mark.parallel :228 :228: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'. .pybuild/cpython3_3.9/build/pysph/sph/bc/tests/test_simple_inlet_outlet.py::TestSimpleInlet1D::test_inlet_calls_callback /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_d4d2f4620a7b2524086275ccd7e1980a.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/bc/tests/test_simple_inlet_outlet.py::TestSimpleOutlet1D::test_outlet_absorbs_particles_from_source /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_e33701e75932aa50c325a9da5905e046.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_acceleration_eval.py::TestAccelerationEval1D::test_should_call_initialize_pair /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_23a3818adde45352a04c1b7364f8beb8.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_acceleration_eval.py::TestAccelerationEval1D::test_should_call_pre_post_functions_in_group /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_6bd24ef6276cfb0a627c4a76f48d9905.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_acceleration_eval.py::TestAccelerationEval1D::test_should_call_py_initialize /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_2050fc7c6320c48dbe6a33538cf05088.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_acceleration_eval.py::TestAccelerationEval1D::test_should_handle_repeated_helper_functions /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_766c702abd060b362383b083d9c03275.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_acceleration_eval.py::TestAccelerationEval1D::test_should_iterate_iterated_group /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_33b81f4dba430aaf42210931044b04c0.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_acceleration_eval.py::TestAccelerationEval1D::test_should_iterate_nested_groups /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_7717c1442a4d826d0e187f434ef96cbc.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_acceleration_eval.py::TestAccelerationEval1D::test_should_not_iterate_normal_group /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_cfe2eb093a39e8e702efa0cf780bf4e3.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_acceleration_eval.py::TestAccelerationEval1D::test_should_run_reduce /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_678795442fd61741ccc5ce5dd5c5c753.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_acceleration_eval.py::TestAccelerationEval1D::test_should_support_constants /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_7bb1bab96b93bbdaafc45e03d4993835.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_acceleration_eval.py::TestAccelerationEval1D::test_should_support_loop_all_and_loop /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_e7e9ab313fa06d6ac295a713d6d20ed0.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_acceleration_eval.py::TestAccelerationEval1D::test_should_support_loop_all_and_loop /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_536b4600578e21ae33f7deb8aa1f71fe.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_acceleration_eval.py::TestAccelerationEval1D::test_should_work_with_non_double_arrays /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_f9827192da77f6672a3575a967f33ba7.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_integrator.py::TestIntegratorAdaptiveTimestep::test_compute_timestep_with_dt_adapt /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_76734bae3a461753975fbf791fdbb19b.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_integrator.py::TestIntegratorAdaptiveTimestep::test_compute_timestep_with_dt_adapt_trumps_dt_cfl /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_3eef2402041a6d8884be144e1ea8a11f.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_integrator.py::TestIntegratorAdaptiveTimestep::test_compute_timestep_with_dt_cfl /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_14fdd08882c92b4eca96b8e5525a5e26.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_integrator.py::TestIntegratorAdaptiveTimestep::test_compute_timestep_without_adaptive /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_a0271db338b0a591d39b669652df021c.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_integrator.py::TestLeapFrogIntegrator::test_helper_can_be_used_with_stepper /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_afce861c4d3d616622e5e739877d460b.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_integrator.py::TestLeapFrogIntegrator::test_integrator_calls_only_py_when_no_stage /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_a8dbf3b89f1f24e1514c5a05249db577.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_integrator.py::TestLeapFrogIntegrator::test_integrator_calls_py_stage1 /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_5d94160891ab9d7b65d483394d53f090.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_integrator.py::TestLeapFrogIntegrator::test_integrator_calls_py_stage1_stage2 /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_91ff9b09094d9dbbd640f4b6119df413.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_integrator.py::TestLeapFrogIntegrator::test_leapfrog /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_17141a5fd5c62030e087718d7d2cd89f.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_integrator.py::TestPEFRLIntegrator::test_pefrl /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_28bc252d0d0bd9e4d053fe4ec8d0ebc8.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_kernel_corrections.py::TestKernelCorrection2D::test_crksph /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_03fdf2f0a8238e4859e602e5100a8ae8.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_kernel_corrections.py::TestKernelCorrection2D::test_crksph_symmetric /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_3879b817675749e849fa14f03c2f577e.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_kernel_corrections.py::TestKernelCorrection2D::test_gradient_correction /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_c2abdc8087fe603ffd109cd9e5859cec.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_kernel_corrections.py::TestKernelCorrection2D::test_mixed_gradient_correction /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_d286287fc29a88343393d0c2866d769c.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_kernel_corrections.py::TestKernelCorrection3D::test_gradient_correction /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_aa0363728d382da65870dd91f24707af.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_kernel_corrections.py::TestKernelCorrection3D::test_mixed_gradient_correction /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_102aa4de9cd8d5ff37ffec30e2e1c5a5.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_band_matrix /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py:92: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. mat = np.matrix(mat) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_band_matrix /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py:93: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. new_b = mat * np.transpose(np.matrix(result)) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_band_matrix .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_dense_matrix .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_general_matrix .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_symmetric_matrix .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_symmetric_positivedefinite_Matrix .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_tridiagonal_matrix .pybuild/cpython3_3.9/build/pysph/tools/tests/test_geometry.py::TestGeometry::test_rotate .pybuild/cpython3_3.9/build/pysph/tools/tests/test_geometry.py::TestGeometry::test_rotate /usr/lib/python3/dist-packages/numpy/matrixlib/defmatrix.py:69: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. return matrix(data, dtype=dtype, copy=False) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_dense_matrix /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py:103: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. mat = np.matrix(mat) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_dense_matrix /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py:104: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. new_b = mat * np.transpose(np.matrix(result)) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_general_matrix /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py:81: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. mat = np.matrix(mat) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_general_matrix /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py:82: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. new_b = mat * np.transpose(np.matrix(result)) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_symmetric_matrix /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py:126: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. mat = np.matrix(mat) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_symmetric_matrix /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py:127: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. new_b = mat * np.transpose(np.matrix(result)) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_symmetric_positivedefinite_Matrix /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py:138: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. mat = np.matrix(mat) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_symmetric_positivedefinite_Matrix /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py:139: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. new_b = mat * np.transpose(np.matrix(result)) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_tridiagonal_matrix /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py:115: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. mat = np.matrix(mat) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py::TestLinalg::test_tridiagonal_matrix /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/sph/tests/test_linalg.py:116: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. new_b = mat * np.transpose(np.matrix(result)) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_multi_group_integrator.py::TestMultiGroupIntegrator::test_different_accels_per_integrator /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_03d2f3c8840eaa38e2d13edb3a0927a1.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/sph/tests/test_multi_group_integrator.py::TestMultiGroupIntegrator::test_different_accels_per_integrator /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/.pysph/source/py3.9-linux-x86_64/m_f16a981c222b02ffbc9a137fd99ac24b.pyx tree = Parsing.p_module(s, pxd, full_module_name) .pybuild/cpython3_3.9/build/pysph/tools/tests/test_geometry.py::TestGeometry::test_rotate /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools/geometry.py:176: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. rotation_matrix = matrix_exp(np.matrix(matrix)) .pybuild/cpython3_3.9/build/pysph/tools/tests/test_geometry.py::TestGeometry::test_rotate /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build/pysph/tools/tests/test_geometry.py:76: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. rotation_matrix = G.matrix_exp(np.matrix(mat)) .pybuild/cpython3_3.9/build/pysph/tools/tests/test_geometry_stl.py::TestGeometry::test_get_points_from_mgrid /usr/lib/python3/dist-packages/numpy/core/_asarray.py:83: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray return array(a, dtype, copy=False, order=order) -- Docs: https://docs.pytest.org/en/stable/warnings.html =========================== short test summary info ============================ FAILED pysph/parallel/tests/test_openmp.py::TestOpenMPExamples::test_ldcavity_example = 1 failed, 525 passed, 273 skipped, 90 deselected, 73 warnings in 1845.56s (0:30:45) = E: pybuild pybuild:353: test: plugin distutils failed with: exit code=1: cd /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10/.pybuild/cpython3_3.9/build; python3.9 -m pytest -k 'not test_sph_evaluator and not TestInterpolator' dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13 make: *** [debian/rules:11: binary-indep] Error 25 dpkg-buildpackage: error: debian/rules binary-indep subprocess returned exit status 2 E: run_chroot failed: E: command failed: chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pysph-OHhIxs/pysph-1.0-b0-20191115.gite3d5e10 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612896464" dpkg-buildpackage -uc -a amd64 --build=all" W: listening on child socket failed: I: removing tempdir /tmp/mmdebstrap.SaMeQGlEt9... mmdebstrap failed