Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/pymol/pymol_2.5.0+dfsg-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/pymol-2.5.0+dfsg-1s7s8oqn4/pymol_2.5.0+dfsg-1_all.buildinfo Get source package info: pymol=2.5.0+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/pymol/2.5.0+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-5 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-5 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-12 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-python=5.20211214 dh-strip-nondeterminism=1.12.1-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-lmodern=2.004.5-6.1 freeglut3=2.8.1-6 freeglut3-dev=2.8.1-6 g++=4:11.2.0-2 g++-11=11.2.0-12 gcc=4:11.2.0-2 gcc-11=11.2.0-12 gcc-11-base=11.2.0-12 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hdf5-helpers=1.10.7+repack-4 hostname=3.23 icu-devtools=67.1-7 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-12 libatomic1=11.2.0-12 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libbinutils=2.37-10 libblas3=3.10.0-1 libblkid1=2.37.2-4 libbrotli-dev=1.0.9-2+b3 libbrotli1=1.0.9-2+b3 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-5 libc-bin=2.33-1 libc-dev-bin=2.33-1 libc6=2.33-1 libc6-dev=2.33-1 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-12 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.26-1 libcrypt1=1:4.4.26-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libcups2=2.3.3op2-7 libcurl3-gnutls=7.79.1-2 libcurl4=7.79.1-2 libcurl4-openssl-dev=7.79.1-2 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.12.20-3 libdebconfclient0=0.261 libdebhelper-perl=13.5.2 libdouble-conversion3=3.1.5-7 libdpkg-perl=1.21.1 libdrm-amdgpu1=2.4.108-1 libdrm-common=2.4.108-1 libdrm-intel1=2.4.108-1 libdrm-nouveau2=2.4.108-1 libdrm-radeon1=2.4.108-1 libdrm2=2.4.108-1 libedit2=3.1-20210910-1 libegl-dev=1.3.4-2+b1 libegl-mesa0=21.2.6-1 libegl1=1.3.4-2+b1 libelf1=0.186-1 libevdev2=1.12.0+dfsg-1 libexpat1=2.4.1-3 libexpat1-dev=2.4.1-3 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.12.1-1 libfontconfig1=2.13.1-4.2 libfreetype-dev=2.11.0+dfsg-1 libfreetype6=2.11.0+dfsg-1 libfreetype6-dev=2.11.0+dfsg-1 libgbm1=21.2.6-1 libgcc-11-dev=11.2.0-12 libgcc-s1=11.2.0-12 libgcrypt20=1.9.4-4 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgfortran5=11.2.0-12 libgl-dev=1.3.4-2+b1 libgl1=1.3.4-2+b1 libgl1-mesa-dev=21.2.6-1 libgl1-mesa-dri=21.2.6-1 libglapi-mesa=21.2.6-1 libgles-dev=1.3.4-2+b1 libgles1=1.3.4-2+b1 libgles2=1.3.4-2+b1 libglew-dev=2.2.0-4 libglew2.2=2.2.0-4 libglib2.0-0=2.70.2-1 libglm-dev=0.9.9.8+ds-2 libglu1-mesa=9.0.1-1 libglu1-mesa-dev=9.0.1-1 libglvnd-core-dev=1.3.4-2+b1 libglvnd-dev=1.3.4-2+b1 libglvnd0=1.3.4-2+b1 libglx-dev=1.3.4-2+b1 libglx-mesa0=21.2.6-1 libglx0=1.3.4-2+b1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-2 libgomp1=11.2.0-12 libgpg-error0=1.42-3 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libgudev-1.0-0=237-2 libharfbuzz0b=2.7.4-1 libhdf5-103-1=1.10.7+repack-4 libhdf5-cpp-103-1=1.10.7+repack-4 libhdf5-dev=1.10.7+repack-4 libhdf5-fortran-102=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhdf5-hl-cpp-100=1.10.7+repack-4 libhdf5-hl-fortran-100=1.10.7+repack-4 libhogweed6=3.7.3-1 libice-dev=2:1.0.10-1 libice6=2:1.0.10-1 libicu-dev=67.1-7 libicu67=67.1-7 libidn2-0=2.3.2-2 libinput-bin=1.19.2-1 libinput10=1.19.2-1 libisl23=0.24-2 libitm1=11.2.0-12 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libjs-jquery=3.5.1+dfsg+~3.5.5-8 libjs-sphinxdoc=4.3.1-2 libjs-underscore=1.9.1~dfsg-4 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkpathsea6=2021.20210626.59705-1 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-1 libldap-2.4-2=2.4.59+dfsg-1 libllvm12=1:12.0.1-17+b1 liblsan0=11.2.0-12 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libmd4c0=0.4.8-1 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libmtdev1=1.1.6-1 libncursesw6=6.3-1 libnetcdf-dev=1:4.8.1-1 libnetcdf19=1:4.8.1-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libopengl-dev=1.3.4-2+b1 libopengl0=1.3.4-2+b1 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpciaccess0=0.16-1 libpcre2-16-0=10.39-3 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libpixman-1-0=0.40.0-1 libpng-dev=1.6.37-3 libpng16-16=1.6.37-3 libpsl5=0.21.0-1.2 libptexenc1=2021.20210626.59705-1 libpthread-stubs0-dev=0.4-1 libpython3-all-dev=3.9.8-1 libpython3-dev=3.9.8-1 libpython3-stdlib=3.9.8-1 libpython3.10=3.10.1-1 libpython3.10-dev=3.10.1-1 libpython3.10-minimal=3.10.1-1 libpython3.10-stdlib=3.10.1-1 libpython3.9=3.9.9-1 libpython3.9-dev=3.9.9-1 libpython3.9-minimal=3.9.9-1 libpython3.9-stdlib=3.9.9-1 libqt5core5a=5.15.2+dfsg-14 libqt5dbus5=5.15.2+dfsg-14 libqt5designer5=5.15.2-5+b1 libqt5gui5=5.15.2+dfsg-14 libqt5help5=5.15.2-5+b1 libqt5network5=5.15.2+dfsg-14 libqt5opengl5=5.15.2+dfsg-14 libqt5printsupport5=5.15.2+dfsg-14 libqt5sql5=5.15.2+dfsg-14 libqt5test5=5.15.2+dfsg-14 libqt5widgets5=5.15.2+dfsg-14 libqt5xml5=5.15.2+dfsg-14 libquadmath0=11.2.0-12 libreadline8=8.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-2 libsasl2-modules-db=2.1.27+dfsg2-2 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsensors-config=1:3.6.0-7 libsensors5=1:3.6.0-7 libsigsegv2=2.13-1 libsm-dev=2:1.2.3-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.2-4 libsqlite3-0=3.36.0-2 libssh2-1=1.10.0-2 libssl-dev=1.1.1l-1 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-12 libstdc++6=11.2.0-12 libsub-override-perl=0.09-2 libsynctex2=2021.20210626.59705-1 libsystemd0=249.7-1 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libteckit0=2.5.11+ds1-1 libtexlua53=2021.20210626.59705-1 libtexluajit2=2021.20210626.59705-1 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-12 libubsan1=11.2.0-12 libuchardet0=0.0.7-1 libudev1=249.7-1 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libvulkan1=1.2.189.0-2 libwacom-common=1.12-1 libwacom2=1.12-1 libwayland-client0=1.19.0-2+b1 libwayland-server0=1.19.0-2+b1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libx11-dev=2:1.7.2-2+b1 libx11-xcb1=2:1.7.2-2+b1 libxau-dev=1:1.0.9-1 libxau6=1:1.0.9-1 libxaw7=2:1.0.13-1.1 libxcb-dri2-0=1.14-3 libxcb-dri3-0=1.14-3 libxcb-glx0=1.14-3 libxcb-icccm4=0.4.1-1.1 libxcb-image0=0.4.0-1+b3 libxcb-keysyms1=0.4.0-1+b2 libxcb-present0=1.14-3 libxcb-randr0=1.14-3 libxcb-render-util0=0.3.9-1+b1 libxcb-render0=1.14-3 libxcb-shape0=1.14-3 libxcb-shm0=1.14-3 libxcb-sync1=1.14-3 libxcb-util1=0.4.0-1+b1 libxcb-xfixes0=1.14-3 libxcb-xinerama0=1.14-3 libxcb-xinput0=1.14-3 libxcb-xkb1=1.14-3 libxcb1=1.14-3 libxcb1-dev=1.14-3 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxext-dev=2:1.3.4-1 libxext6=2:1.3.4-1 libxfixes3=1:5.0.3-2 libxi6=2:1.8-1 libxkbcommon-x11-0=1.3.1-1 libxkbcommon0=1.3.1-1 libxml2=2.9.12+dfsg-5+b1 libxml2-dev=2.9.12+dfsg-5+b1 libxmu6=2:1.1.2-2+b3 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxt-dev=1:1.2.0-1 libxt6=1:1.2.0-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.12-1+b1 libzstd1=1.4.8+dfsg-3 libzzip-0-13=0.13.72+dfsg.1-1.1 linux-libc-dev=5.15.5-1 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 ncurses-base=6.3-1 ncurses-bin=6.3-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 python3=3.9.8-1 python3-all=3.9.8-1 python3-all-dev=3.9.8-1 python3-dev=3.9.8-1 python3-distutils=3.9.9-3 python3-lib2to3=3.9.9-3 python3-minimal=3.9.8-1 python3-numpy=1:1.21.4-2 python3-opengl=3.1.5+dfsg-1 python3-pkg-resources=59.4.0-1 python3-pyqt5=5.15.6+dfsg-1+b1 python3-pyqt5.qtopengl=5.15.6+dfsg-1+b1 python3-pyqt5.sip=12.9.0-3+b1 python3.10=3.10.1-1 python3.10-dev=3.10.1-1 python3.10-minimal=3.10.1-1 python3.9=3.9.9-1 python3.9-dev=3.9.9-1 python3.9-minimal=3.9.9-1 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 shared-mime-info=2.0-1 sysvinit-utils=3.00-1 t1utils=1.41-4 tar=1.34+dfsg-1 tex-common=6.17 texlive-base=2021.20211127-1 texlive-binaries=2021.20210626.59705-1 texlive-latex-base=2021.20211127-1 tzdata=2021e-1 ucf=3.0043 util-linux=2.37.2-4 x11-common=1:7.7+23 x11proto-dev=2021.5-1 xdg-utils=1.1.3-4.1 xkb-data=2.33-1 xorg-sgml-doctools=1:1.11-1.1 xtrans-dev=1.4.0-1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211221T034239Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211221T034239Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211216T150239Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211214T153755Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d pymol=2.5.0+dfsg-1 && mkdir -p /build/pymol-52qYQL && dpkg-source --no-check -x /*.dsc /build/pymol-52qYQL/pymol-2.5.0+dfsg && chown -R builduser:builduser /build/pymol-52qYQL" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pymol-52qYQL/pymol-2.5.0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1639583503" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/pymol-52qYQL /tmp/pymol-2.5.0+dfsg-1s7s8oqn4 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211214T153755Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.TBgStmCrEt as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.TBgStmCrEt Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211214T153755Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211214T153755Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1003 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4679 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-1) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211221T034239Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211221T034239Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211216T150239Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211214T153755Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.TBgStmCrEt Get:1 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm InRelease [129 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211216T150239Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20211214T153755Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main Sources [11.8 MB] Get:5 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20211216T150239Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20211216T150239Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20211216T150239Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211216T150239Z unstable/main amd64 Packages [12.0 MB] Fetched 35.3 MB in 29s (1213 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.TBgStmCrEt I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d pymol=2.5.0+dfsg-1 && mkdir -p /build/pymol-52qYQL && dpkg-source --no-check -x /*.dsc /build/pymol-52qYQL/pymol-2.5.0+dfsg && chown -R builduser:builduser /build/pymol-52qYQL"' exec /tmp/mmdebstrap.TBgStmCrEt Reading package lists... NOTICE: 'pymol' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/pymol.git Please use: git clone https://salsa.debian.org/debichem-team/pymol.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6957 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main pymol 2.5.0+dfsg-1 (dsc) [2293 B] Get:2 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main pymol 2.5.0+dfsg-1 (tar) [6897 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main pymol 2.5.0+dfsg-1 (diff) [57.3 kB] Fetched 6957 kB in 5s (1265 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'pymol_2.5.0+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting pymol in /build/pymol-52qYQL/pymol-2.5.0+dfsg dpkg-source: info: unpacking pymol_2.5.0+dfsg.orig.tar.xz dpkg-source: info: unpacking pymol_2.5.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 03_povray.patch dpkg-source: info: applying 22_fix_pymol_import.patch dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch dpkg-source: info: applying 28_no_data_install_in_python_path.patch dpkg-source: info: applying 31_fix_format-security.patch dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch dpkg-source: info: applying 40_mstop_movies.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pymol-52qYQL/pymol-2.5.0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1639583503" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.TBgStmCrEt dpkg-buildpackage: info: source package pymol dpkg-buildpackage: info: source version 2.5.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean --with python3 --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:237: python3.10 setup.py clean /build/pymol-52qYQL/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running clean removing '/build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it I: pybuild base:237: python3.9 setup.py clean running clean removing '/build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/pymol-52qYQL/pymol-2.5.0+dfsg' rm -f -r build test/tmp test/cmp generated dh_clean debian/pymol-ref-card.* \ Rules.make create_shadertext.pyc make[1]: Leaving directory '/build/pymol-52qYQL/pymol-2.5.0+dfsg' debian/rules binary-indep dh binary-indep --with python3 --buildsystem pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:237: python3.10 setup.py config /build/pymol-52qYQL/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running config I: pybuild base:237: python3.9 setup.py config running config dh_auto_build -i -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3.10 setup.py build /build/pymol-52qYQL/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running build running build_py creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/arc.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/bond_amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/bond_mmff.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/bonds.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/brick.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/cc1.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/charge.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/cif.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/cpv.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/dictdb.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/gamess1.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/gms.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/hetatm.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/io.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/lst.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/mae.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/map.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/mass.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/mmd.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/models.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/mol.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/mol2.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/neighbor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/pdb.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/pkl.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/place.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/protein.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/protein_amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/protein_amber99.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/protein_mmff.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/protein_residues.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/sdf.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/solvate.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/water_amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/water_residues.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy copying modules/chempy/xyz.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin copying modules/chempy/bmin/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin copying modules/chempy/bmin/commands.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin copying modules/chempy/bmin/realtime.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin copying modules/chempy/bmin/state.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin copying modules/chempy/bmin/util.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ copying modules/chempy/champ/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ copying modules/chempy/champ/amber99.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ copying modules/chempy/champ/assign.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ copying modules/chempy/champ/formal_charges.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/fast copying modules/chempy/fast/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/fast creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/fragments copying modules/chempy/fragments/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/fragments creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mmtf copying modules/chempy/mmtf/io.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mmtf creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker copying modules/chempy/tinker/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker copying modules/chempy/tinker/amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker copying modules/chempy/tinker/keyword.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker copying modules/chempy/tinker/realtime.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker copying modules/chempy/tinker/state.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt copying modules/pmg_qt/TextEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt copying modules/pmg_qt/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt copying modules/pmg_qt/builder.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt copying modules/pmg_qt/file_dialogs.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt copying modules/pmg_qt/keymapping.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt copying modules/pmg_qt/mimic_pmg_tk.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt copying modules/pmg_qt/mimic_tk.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt copying modules/pmg_qt/properties_dialog.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt copying modules/pmg_qt/pymol_gl_widget.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt copying modules/pmg_qt/shortcut_menu_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt copying modules/pmg_qt/volume.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/python.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk copying modules/pmg_tk/ColorEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk copying modules/pmg_tk/Demo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk copying modules/pmg_tk/PMGApp.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk copying modules/pmg_tk/SetEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk copying modules/pmg_tk/Setting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk copying modules/pmg_tk/TextEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk copying modules/pmg_tk/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk copying modules/pmg_tk/volume.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins copying modules/pmg_tk/skins/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/demo creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/normal creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/startup creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/__main__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/api.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/callback.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/cgo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/checking.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/cmd.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/colorprinting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/colorramping.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/commanding.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/completing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/computing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/constants.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/constants_palette.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/controlling.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/creating.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/diagnosing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/editing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/editor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/experimenting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/exporting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/externing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/feedingback.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/fitting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/headering.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/helping.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/importing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/internal.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/invocation.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/keyboard.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/keywords.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/lazyio.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/locking.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/menu.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/monitoring.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/morphing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/movie.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/moving.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/mpeg_encode.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/parser.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/parsing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/preset.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/pymolhttpd.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/querying.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/rpc.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/save_shortcut.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/selecting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/selector.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/seqalign.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/setting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/shortcut.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/shortcut_dict.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/shortcut_manager.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/util.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/vfont.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/viewing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/wizarding.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/xray.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/xwin.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/povray.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol copying modules/pymol/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/Qt copying modules/pymol/Qt/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/Qt copying modules/pymol/Qt/utils.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/Qt creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins copying modules/pymol/plugins/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins copying modules/pymol/plugins/installation.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui_qt.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins copying modules/pymol/plugins/repository.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/stereochemistry copying modules/pymol/stereochemistry/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/stereochemistry creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/annotation.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/appearance.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/benchmark.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/box.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/charge.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/cleanup.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/command.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/demo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/density.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/distance.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/dragging.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/filter.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/label.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/measurement.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/message.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/openvr.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/renaming.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/sculpting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/security.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard copying modules/pymol/wizard/toggle.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol2 copying modules/pymol2/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol2 copying modules/pymol2/cmd2.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol2 copying modules/pmg_qt/forms/askpartial.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/change_confirm.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/colors.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/create_shortcut.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/fetch.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/help_shortcut.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_aln.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_map.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mtz.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/movieexport.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginitem.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/props.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/render.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_object.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/shortcut_menu.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.linux-x86_64-3.10 creating build/temp.linux-x86_64-3.10/build creating build/temp.linux-x86_64-3.10/build/generated creating build/temp.linux-x86_64-3.10/contrib creating build/temp.linux-x86_64-3.10/contrib/uiuc creating build/temp.linux-x86_64-3.10/contrib/uiuc/plugins creating build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.linux-x86_64-3.10/layer0 creating build/temp.linux-x86_64-3.10/layer1 creating build/temp.linux-x86_64-3.10/layer2 creating build/temp.linux-x86_64-3.10/layer3 creating build/temp.linux-x86_64-3.10/layer4 creating build/temp.linux-x86_64-3.10/layer5 creating build/temp.linux-x86_64-3.10/ov creating build/temp.linux-x86_64-3.10/ov/src x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-x86_64-3.10/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function ‘write_psf_structure’: contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 782 | if (strlen(atoms[i].type) > fw) { | ^ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’: contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable] 103 | int i, numatoms; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘write_timestep’: contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 206 | if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) { | ^~ In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30: At top level: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: ‘fortread_4’ defined but not used [-Wunused-function] 103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) { | ^~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘fort_get_endian_reclen’ defined but not used [-Wunused-function] 55 | static int fort_get_endian_reclen(int reclen, int word0, int word1, | ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘fort_eat_recmark’ defined but not used [-Wunused-function] 36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) { | ^~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28, from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘swap8_aligned’ defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function] 133 | static int get_pte_idx(const char *label) | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS); | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 273 | if(ok) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function ‘void* open_grid_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 84 | fread(&dataBegin, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS); | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 413 | return ok; | ^~~~~~ In file included from /usr/include/string.h:519, from contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:41: In function ‘strncpy’, inlined from ‘read_tinker_structure’ at contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from /usr/include/string.h:519, from contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:23, from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31: In function ‘strncpy’, inlined from ‘get_pdb_cryst1’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:277:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_structure’: contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 730 | if (len > sizeof(name)) { | ^ contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_timestep’: contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) { | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 426 | fgets(buf, n, mf->f); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 102 | fread(&headersize, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)’: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 278 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 297 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 319 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 357 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 223 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 241 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 164 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 176 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 183 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_readline’: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 279 | for (i = 0; i < strlen(line); ++i) { | ^ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 175 | fgets(readbuf, 1023, cube->fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 181 | fgets(readbuf, 1023, cube->fd); // skip second header line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 326 | fgets(readbuf, 1023, cube->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 337 | fgets(readbuf, 1023, cube->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 339 | fscanf(cube->fd, "%d", &cube->nsets); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 344 | fscanf(cube->fd, "%d", &orb); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fgets(readbuf, 13, edm->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44 | fgets(readbuf, 1024, fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In function ‘strncpy’, inlined from ‘get_pdb_header’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5, inlined from ‘open_pdb_read’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_header’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5, inlined from ‘open_pdb_read’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread(brick, sizeof(char), 512, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fscanf(fd, "%3s", keyWord); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 123 | fscanf(fd, " %s %f", keyWord, &prod); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 128 | fscanf(fd, " %s %f", keyWord, &plus); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 135 | fscanf(fd, " %s %f", keyWord, &sigma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 275 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 289 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 127 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 138 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 74 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 82 | fgets(line, LINESIZE, fd); // Read the molecule info | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fgets(line, LINESIZE, fd); // Read the charge_type | ~~~~~^~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 519 | if (rc != iov[i].iov_len) | ^~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable] 443 | int i, uid; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable] 484 | int i, count, atomdata, pos, idx, xyzcount, j; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable] 503 | char oldChain[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable] 803 | int bondTable[32]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable] 807 | int i, pos, j, k; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable] 811 | char modelNum[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable] 822 | molfile_atom_t * atom; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable] 884 | int test = parser->nbonds + bnum; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable] 984 | int bondTable[32]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable] 988 | int i, pos, j, k; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable] 991 | char modelNum[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable] 1002 | molfile_atom_t * atom; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable] 1409 | FILE* fd; | ^~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdheader’: contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 222 | if (input_integer[0] != dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’: contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable] 546 | fio_size_t readlen; /* number of bytes actually read */ | ^~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60: At top level: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function] 609 | static int fio_write_str(fio_fd fd, const char *str) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function] 605 | static int fio_read_int32(fio_fd fd, int *i) { | ^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function] 459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { | ^~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function] 111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) | ^~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] 127 | sprintf(atom->resname, "%d", resid); | ^~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] 127 | sprintf(atom->resname, "%d", resid); | ^~~~ In file included from /usr/include/stdio.h:866, from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 8 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fread(&dataBegin, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 545 | for (i=0; ititle, sizeof(prm->title), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 427 | fgets(sdum, sizeof(sdum), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 439 | fscanf(file,parm7, | ~~~~~~^~~~~~~~~~~~ 440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 | &prm->Jparm, &prm->Nparm); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 443 | fscanf(file, parm7, | ~~~~~~^~~~~~~~~~~~~ 444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 | &prm->Natyp, &prm->Nphb); | ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 451 | fscanf(file,"%8d",&prm->Numextra); //BB | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 87 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 545 | for (i=0; ifile)) | ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 295 | if (NULL == fgets(fbuffer, 1024, data->file)) | ^~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In function ‘strncat’, inlined from ‘get_basis_options’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:135:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation] 135 | return __builtin___strncat_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘get_basis_options’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:135:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation] 135 | return __builtin___strncat_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:34: In function ‘strncpy’, inlined from ‘read_dlpoly_config_structure’ at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | fread(intHeader, sizeof(int), 5, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 82 | fread(floatHeader, sizeof(float), 6, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_dlpoly_structure’ at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_timestep(void*, int, molfile_timestep_t*)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 328 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 346 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 355 | fgets(nextline, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 419 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 194 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 203 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 59 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 435 | fscanf(file, " " DBLFMT, &prm->Charges[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 444 | fscanf(file, " " DBLFMT, &prm->Masses[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 510 | fscanf(file, " " DBLFMT, &prm->Rk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(file, " " DBLFMT, &prm->Req[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 524 | fscanf(file, " " DBLFMT, &prm->Tk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 531 | fscanf(file, " " DBLFMT, &prm->Teq[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 538 | fscanf(file, " " DBLFMT, &prm->Pk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 545 | fscanf(file, " " DBLFMT, &prm->Pn[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 552 | fscanf(file, " " DBLFMT, &prm->Phase[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 559 | fscanf(file, " " DBLFMT, &prm->Solty[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 756 | fscanf(file, " " DBLFMT, &prm->HB12[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 763 | fscanf(file, " " DBLFMT, &prm->HB6[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 771 | fscanf(file, " " DBLFMT, &H[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 | &prm->Natcap, &prm->Cutcap, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 | &prm->Xcap, &prm->Ycap, &prm->Zcap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] 360 | strncpy(tmptype, atom->type, sizeof(atom->type)); | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 519 | if (rc != iov[i].iov_len) | ^~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89: At top level: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function] 459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { | ^~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable] 459 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable] 1407 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable] 1541 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1629 | fread (&len, sizeof(int), 1, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1631 | fread (str, len, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2057 | fread (ptr, 1, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2063 | fread (ptr, 1, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2069 | fread (ptr, 2, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2075 | fread (ptr, 2, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2081 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2087 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2093 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2099 | fread (ptr, 8, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 238 | fgets(readbuf, 1024, fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 408 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 442 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 444 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 446 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 448 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 450 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 473 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 508 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 233 | fread(brick, sizeof(char), 512, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fread(fileHeader, sizeof(short), 19, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’: contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 116 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 132 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 149 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 161 | fgets(line, 80, infile); //one more read to keep us in sync | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 170 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 217 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 256 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_fmoxyz’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5, inlined from ‘get_input_structure’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1537:12: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘char* recreate_command_line(int, char**)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1334 | line[0] = '\0'; | ~~~~~~~~^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’ 1333 | line = (char *) malloc (sizeof(char) * len); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_proc_mem.isra’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_proc_mem.isra’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_contrl’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_contrl_firefly’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘symmetry_expand’ at contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5, inlined from ‘get_traj_frame.constprop’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2931:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Deferred.cpp -o build/temp.linux-x86_64-3.10/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 166 | char *name, *type; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable] 166 | char *name, *type; | ^~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-x86_64-3.10/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function ‘int read_spider_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 286 | fread(datablock, total * sizeof(float), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:53: In function ‘strncpy’, inlined from ‘read_xyz_structure’ at contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_xyz_structure’ at contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:127:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:34: In function ‘strncpy’, inlined from ‘get_pqr_cryst1’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3, inlined from ‘read_pqr_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:319:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/MemoryUsage.cpp -o build/temp.linux-x86_64-3.10/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In function ‘strncpy’, inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3, inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3, inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3, inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3, inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Block.cpp -o build/temp.linux-x86_64-3.10/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-x86_64-3.10/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Err.cpp -o build/temp.linux-x86_64-3.10/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’: contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 96 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 104 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 131 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 162 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 171 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ layer0/MemoryUsage.cpp: In function ‘size_t pymol::memory_usage()’: layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=] 38 | std::fscanf(fp, "%*zu%zu", &vmRSS); | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 186 | fread(line3, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’ 284 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 285 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’ 291 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’ 305 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 306 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’ 307 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’ 311 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’ 313 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’ 318 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 319 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’ 320 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’ 328 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 329 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’ 330 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’ 354 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 355 | fread(vertex, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’ 356 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’ 357 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 358 | fread(access, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’ 359 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’ 360 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 361 | fread(normal, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’ 362 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’ 371 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | fread(triangle, 3 * sizeof(int), ntriangles, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’ 373 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’ 374 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 375 | fread(properties, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’ 394 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 395 | fread(striangle, sizeof(short), 3 * ntriangles, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’ 396 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’ 397 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 398 | fread(properties, sizeof(float), 3 * nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 38 | std::fscanf(fp, "%*zu%zu", &vmRSS); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-x86_64-3.10/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from /usr/include/stdio.h:866, from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:29: In function ‘sprintf’, inlined from ‘vtf_error’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:3, inlined from ‘vtf_read_bonds’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1203:5, inlined from ‘vtf_read_bonds’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1193:12: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Util.cpp -o build/temp.linux-x86_64-3.10/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from /usr/include/string.h:519, from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:32: In function ‘strncat’, inlined from ‘vtf_parse_atom’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9, inlined from ‘vtf_parse_structure’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24, inlined from ‘_vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5, inlined from ‘vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:135:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation] 135 | return __builtin___strncat_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘vtf_parse_atom’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7, inlined from ‘vtf_parse_structure’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24, inlined from ‘_vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5, inlined from ‘vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:135:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation] 135 | return __builtin___strncat_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-x86_64-3.10/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable] 1904 | int last_ctnumber = -1; | ^~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/os_gl.cpp -o build/temp.linux-x86_64-3.10/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Feedback.cpp -o build/temp.linux-x86_64-3.10/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Basis.cpp -o build/temp.linux-x86_64-3.10/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’: contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 288 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 297 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 365 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 387 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 395 | fgets(nextline, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 455 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 241 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 250 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 72 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/CarveHelper.cpp -o build/temp.linux-x86_64-3.10/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Sphere.cpp -o build/temp.linux-x86_64-3.10/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Util2.cpp -o build/temp.linux-x86_64-3.10/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Parse.cpp -o build/temp.linux-x86_64-3.10/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Color.cpp -o build/temp.linux-x86_64-3.10/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/ContourSurf.cpp -o build/temp.linux-x86_64-3.10/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-x86_64-3.10/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Field.cpp -o build/temp.linux-x86_64-3.10/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-x86_64-3.10/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-x86_64-3.10/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Vector.cpp -o build/temp.linux-x86_64-3.10/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Crystal.cpp -o build/temp.linux-x86_64-3.10/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘void DDmkdir(const string&, mode_t, int, int)’: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 714 | sprintf(sub, "%03x/", i); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646] 714 | sprintf(sub, "%03x/", i); | ^~~~~~~ In file included from /usr/include/stdio.h:866, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 6 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 722 | sprintf(subsub, "%03x", j); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646] 722 | sprintf(subsub, "%03x", j); | ^~~~~~ In file included from /usr/include/stdio.h:866, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 4 and 9 bytes into a destination of size 6 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/ButMode.cpp -o build/temp.linux-x86_64-3.10/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘std::string framefile(const string&, size_t, size_t, int, int)’: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 675 | sprintf(answer, "%03x/", d1); | ^ In file included from /usr/include/stdio.h:866, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 9 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646] 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 9 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Word.cpp -o build/temp.linux-x86_64-3.10/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/File.cpp -o build/temp.linux-x86_64-3.10/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-x86_64-3.10/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Map.cpp -o build/temp.linux-x86_64-3.10/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/ccealignmodule.cpp -o build/temp.linux-x86_64-3.10/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-x86_64-3.10/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-x86_64-3.10/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/CGO.cpp -o build/temp.linux-x86_64-3.10/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-x86_64-3.10/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-x86_64-3.10/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-x86_64-3.10/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Ortho.cpp -o build/temp.linux-x86_64-3.10/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Ray.cpp -o build/temp.linux-x86_64-3.10/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Texture.cpp -o build/temp.linux-x86_64-3.10/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/FontType.cpp -o build/temp.linux-x86_64-3.10/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Match.cpp -o build/temp.linux-x86_64-3.10/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Matrix.cpp -o build/temp.linux-x86_64-3.10/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-x86_64-3.10/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/marching_cubes.cpp -o build/temp.linux-x86_64-3.10/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Tracker.cpp -o build/temp.linux-x86_64-3.10/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Movie.cpp -o build/temp.linux-x86_64-3.10/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/Triangle.cpp -o build/temp.linux-x86_64-3.10/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer1/Ray.cpp: In function ‘void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)’: layer1/Ray.cpp:1535:20: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=] 1535 | "%s" | ^~ ...... 1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); | ~~~~~~~~ layer1/Ray.cpp:1530:18: note: ‘sprintf’ output between 116 and 3302 bytes into a destination of size 1024 1530 | sprintf(buffer, | ~~~~~~~^~~~~~~~ 1531 | "Transform {\n" | ~~~~~~~~~~~~~~~ 1532 | " translation %8.6f %8.6f %8.6f\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1533 | " rotation %8.6f %8.6f %8.6f %8.6f\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1534 | " children [\n" | ~~~~~~~~~~~~~~~ 1535 | "%s" | ~~~~ 1536 | " ]\n" | ~~~~~~ 1537 | "}\n", | ~~~~~~ 1538 | vert2[0] - mid[0], | ~~~~~~~~~~~~~~~~~~ 1539 | vert2[1] - mid[1], | ~~~~~~~~~~~~~~~~~~ 1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-x86_64-3.10/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/P.cpp -o build/temp.linux-x86_64-3.10/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/SymOpPConv.cpp -o build/temp.linux-x86_64-3.10/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-x86_64-3.10/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/SymOpTools.cpp -o build/temp.linux-x86_64-3.10/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Wizard.cpp -o build/temp.linux-x86_64-3.10/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-x86_64-3.10/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-x86_64-3.10/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Seq.cpp -o build/temp.linux-x86_64-3.10/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer1/Wizard.cpp: In member function ‘virtual int CWizard::release(int, int, int, int)’: layer1/Wizard.cpp:571:18: warning: unused variable ‘wiz’ [-Wunused-variable] 571 | if (auto wiz = WizardGet(G)) { | ^~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-x86_64-3.10/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Control.cpp -o build/temp.linux-x86_64-3.10/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-x86_64-3.10/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Text.cpp -o build/temp.linux-x86_64-3.10/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/PConv.cpp -o build/temp.linux-x86_64-3.10/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-x86_64-3.10/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Setting.cpp -o build/temp.linux-x86_64-3.10/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Rep.cpp -o build/temp.linux-x86_64-3.10/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-x86_64-3.10/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-x86_64-3.10/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Extrude.cpp -o build/temp.linux-x86_64-3.10/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Picking.cpp -o build/temp.linux-x86_64-3.10/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Pop.cpp -o build/temp.linux-x86_64-3.10/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-x86_64-3.10/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Scene.cpp -o build/temp.linux-x86_64-3.10/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-x86_64-3.10/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Font.cpp -o build/temp.linux-x86_64-3.10/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-x86_64-3.10/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-x86_64-3.10/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/CifFile.cpp -o build/temp.linux-x86_64-3.10/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-x86_64-3.10/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-x86_64-3.10/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-x86_64-3.10/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-x86_64-3.10/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepDot.cpp -o build/temp.linux-x86_64-3.10/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/DistSet.cpp -o build/temp.linux-x86_64-3.10/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-x86_64-3.10/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMap.cpp: In function ‘void ObjectMapDump(const ObjectMap*, const char*, int, int)’: layer2/ObjectMap.cpp:5982:24: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=] 5982 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G); | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output 30 or more bytes (assuming 285) into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp: In function ‘CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)’: layer2/ObjectMolecule.cpp:7579:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=] 7579 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G) | ^~ ~~~~~~~ In file included from layer1/Ortho.h:32, from layer2/ObjectMolecule.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 34 and 289 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMolecule.cpp:7578:3: note: in expansion of macro ‘PRINTFB’ 7578 | PRINTFB(G, FB_ObjectMolecule, FB_Blather) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-x86_64-3.10/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/View.cpp -o build/temp.linux-x86_64-3.10/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-x86_64-3.10/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-x86_64-3.10/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/SceneMouse.cpp -o build/temp.linux-x86_64-3.10/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-x86_64-3.10/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-x86_64-3.10/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-x86_64-3.10/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMolecule.cpp: In member function ‘virtual void ObjectMolecule::update()’: layer2/ObjectMolecule.cpp:10605:82: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] 10605 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer2/ObjectMolecule.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 68 and 333 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMolecule.cpp:10604:13: note: in expansion of macro ‘PRINTFB’ 10604 | PRINTFB(G, FB_ObjectMolecule, FB_Blather) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Shaker.cpp -o build/temp.linux-x86_64-3.10/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMolecule.cpp: In function ‘int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)’: layer2/ObjectMolecule.cpp:10731:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ^~ 10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0); | ~~~~~~ layer2/ObjectMolecule.cpp:10731:21: note: directive argument in the range [-2147483647, 2147483647] 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp:10731:14: note: ‘sprintf’ output between 78 and 2036 bytes into a destination of size 1024 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-x86_64-3.10/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-x86_64-3.10/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’: layer2/ObjectMap.cpp:2961:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2961 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2970:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2970 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2976:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2976 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:3058:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 3058 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/Character.cpp -o build/temp.linux-x86_64-3.10/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/SymOp.cpp -o build/temp.linux-x86_64-3.10/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-x86_64-3.10/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer1/SceneMouse.cpp: In function ‘void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)’: layer1/SceneMouse.cpp:455:32: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=] 455 | " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G); | ^~ ~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/ostream:38, from include/pymol/zstring_view.h:12, from layer1/SceneMouse.h:4, from layer1/SceneMouse.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output 21 or more bytes (assuming 276) into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer1/SymOp.cpp: In member function ‘std::string pymol::SymOp::to_string() const’: layer1/SymOp.cpp:37:32: warning: ‘%d’ directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=] 37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5); | ^~ layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132] 37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5); | ^~~~~~~~~~~ layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132] In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from layer1/SymOp.h:9, from layer1/SymOp.cpp:7: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 6 and 17 bytes into a destination of size 8 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/Editor.cpp -o build/temp.linux-x86_64-3.10/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’: layer2/ObjectMap.cpp:4290:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] 4290 | " ObjectMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:4290:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] 4290 | " ObjectMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-x86_64-3.10/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-x86_64-3.10/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-x86_64-3.10/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-x86_64-3.10/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-x86_64-3.10/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-x86_64-3.10/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-x86_64-3.10/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-x86_64-3.10/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-x86_64-3.10/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-x86_64-3.10/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/SpecRecSpecial.cpp -o build/temp.linux-x86_64-3.10/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Editor.cpp: In function ‘void EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)’: layer3/Editor.cpp:1933:29: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] 1933 | " Editor: grabbing (%s).", name ENDFB(G); | ^~ ~~~~ In file included from layer1/Ortho.h:32, from layer1/ButMode.h:20, from layer3/Editor.cpp:28: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 22 and 277 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Editor.cpp:1932:7: note: in expansion of macro ‘PRINTFB’ 1932 | PRINTFB(G, FB_Editor, FB_Blather) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Editor.cpp: In function ‘void EditorDefineExtraPks(PyMOLGlobals*)’: layer3/Editor.cpp:335:29: warning: ‘%s’ directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=] 335 | sprintf(buffer, "(byres %s)", name); | ^~ ~~~~ layer3/Editor.cpp:335:12: note: ‘sprintf’ output between 9 and 264 bytes into a destination of size 256 335 | sprintf(buffer, "(byres %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:337:31: warning: ‘%s’ directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=] 337 | sprintf(buffer, "(bychain %s)", name); | ^~ ~~~~ layer3/Editor.cpp:337:12: note: ‘sprintf’ output between 11 and 266 bytes into a destination of size 256 337 | sprintf(buffer, "(bychain %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:339:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=] 339 | sprintf(buffer, "(byobject %s)", name); | ^~ ~~~~ layer3/Editor.cpp:339:12: note: ‘sprintf’ output between 12 and 267 bytes into a destination of size 256 339 | sprintf(buffer, "(byobject %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMesh.cpp: In member function ‘virtual void ObjectMesh::update()’: layer2/ObjectMesh.cpp:502:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] 502 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectMesh.cpp:33: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 50 and 305 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:501:9: note: in expansion of macro ‘PRINTFB’ 501 | PRINTFB(I->G, FB_ObjectMesh, FB_Errors) | ^~~~~~~ layer2/ObjectMesh.cpp:535:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] 535 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectMesh.cpp:33: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 27 and 282 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:534:13: note: in expansion of macro ‘PRINTFB’ 534 | PRINTFB(G, FB_ObjectMesh, FB_Details) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer4/Cmd.cpp -o build/temp.linux-x86_64-3.10/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMesh.cpp: In function ‘void ObjectMeshDump(ObjectMesh*, const char*, int, int)’: layer2/ObjectMesh.cpp:329:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] 329 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectMesh.cpp:33: layer0/Feedback.h:274:15: note: ‘snprintf’ output 31 or more bytes (assuming 286) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:328:7: note: in expansion of macro ‘PRINTFB’ 328 | PRINTFB(I->G, FB_ObjectMesh, FB_Actions) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-x86_64-3.10/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/VFont.cpp -o build/temp.linux-x86_64-3.10/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-x86_64-3.10/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/PlugIOManager.cpp: In function ‘pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)’: layer3/PlugIOManager.cpp:946:65: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] 946 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from layer0/os_python.h:34, from layer3/PlugIOManager.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 58 and 313 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer5/main.cpp -o build/temp.linux-x86_64-3.10/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/Executive.cpp -o build/temp.linux-x86_64-3.10/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-x86_64-3.10/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-x86_64-3.10/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-x86_64-3.10/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-x86_64-3.10/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-x86_64-3.10/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/Seeker.cpp -o build/temp.linux-x86_64-3.10/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-x86_64-3.10/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-x86_64-3.10/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-x86_64-3.10/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-x86_64-3.10/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-x86_64-3.10/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-x86_64-3.10/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-x86_64-3.10/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMolecule2.cpp: In function ‘int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)’: layer2/ObjectMolecule2.cpp:335:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] 335 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMolecule2.cpp:24: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 26 and 291 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-x86_64-3.10/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-x86_64-3.10/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectMolecule3.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/Selector.cpp -o build/temp.linux-x86_64-3.10/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-x86_64-3.10/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::update()’: layer2/ObjectSlice.cpp:639:42: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] 639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSlice.cpp:34: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 51 and 306 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSlice.cpp:638:9: note: in expansion of macro ‘PRINTFB’ 638 | PRINTFB(I->G, FB_ObjectSlice, FB_Errors) | ^~~~~~~ layer2/ObjectSlice.cpp:650:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] 650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSlice.cpp:34: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 28 and 283 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSlice.cpp:649:11: note: in expansion of macro ‘PRINTFB’ 649 | PRINTFB(I->G, FB_ObjectSlice, FB_Blather) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer4/Menu.cpp -o build/temp.linux-x86_64-3.10/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)’: layer3/Executive.cpp:9007:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=] 9007 | " Remove: eliminated %d atoms in model \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 42 and 307 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9006:15: note: in expansion of macro ‘PRINTFB’ 9006 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)’: layer3/Executive.cpp:11424:28: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11424 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~ 11425 | name, nSet, obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11424:17: note: directive argument in the range [1, 2147483647] 11424 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 560 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11423:15: note: in expansion of macro ‘PRINTF’ 11423 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function ‘PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)’: layer3/Executive.cpp:11505:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11505 | " Getting: %s for %d bonds in object \"%s\".\n", | ^~ 11506 | name, nSet, obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11505:15: note: directive argument in the range [1, 2147483647] 11505 | " Getting: %s for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 38 and 556 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11504:13: note: in expansion of macro ‘PRINTF’ 11504 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)’: layer3/Executive.cpp:11605:62: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=] 11605 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 306) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11604:17: note: in expansion of macro ‘PRINTF’ 11604 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)’: layer3/Executive.cpp:11684:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11684 | " Setting: %s unset for %d bonds in object \"%s\".\n", | ^~ 11685 | name, nSet, rec->obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11684:15: note: directive argument in the range [1, 2147483647] 11684 | " Setting: %s unset for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 44 and 562 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11683:13: note: in expansion of macro ‘PRINTF’ 11683 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, pymol::CObject*, int, int, int)’: layer3/Executive.cpp:12226:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12226 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12227 | name, value2, obj->Name, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12226:19: note: directive argument in the range [1, 2147483647] 12226 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12225:17: note: in expansion of macro ‘PRINTF’ 12225 | PRINTF | ^~~~~~ layer3/Executive.cpp:12218:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12218 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12219 | name, value2, obj->Name ENDF(G); | ~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12217:17: note: in expansion of macro ‘PRINTF’ 12217 | PRINTF | ^~~~~~ layer3/Executive.cpp:12197:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~ ~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12197:11: note: in expansion of macro ‘PRINTF’ 12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer4/PopUp.cpp -o build/temp.linux-x86_64-3.10/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function ‘int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)’: layer3/Executive.cpp:12129:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12129 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ 12130 | name, op.i4, rec->obj->Name ENDF(G); | ~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12128:23: note: in expansion of macro ‘PRINTF’ 12128 | PRINTF | ^~~~~~ layer3/Executive.cpp:12097:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12097 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~ 12098 | name, value2, nObj, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647] 12097 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647] In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1338 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12096:19: note: in expansion of macro ‘PRINTF’ 12096 | PRINTF | ^~~~~~ layer3/Executive.cpp:12094:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); | ^~ ~~~~ layer3/Executive.cpp:12094:21: note: directive argument in the range [1, 2147483647] 12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1320 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12093:19: note: in expansion of macro ‘PRINTF’ 12093 | PRINTF | ^~~~~~ layer3/Executive.cpp:12161:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12161 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12162 | name, value2, rec->obj->Name, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12161:25: note: directive argument in the range [1, 2147483647] 12161 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12160:23: note: in expansion of macro ‘PRINTF’ 12160 | PRINTF | ^~~~~~ layer3/Executive.cpp:12153:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12153 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12154 | name, value2, rec->obj->Name ENDF(G); | ~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12152:23: note: in expansion of macro ‘PRINTF’ 12152 | PRINTF | ^~~~~~ layer3/Executive.cpp:12057:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~ ~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12057:11: note: in expansion of macro ‘PRINTF’ 12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~~~~~ layer3/Executive.cpp: In function ‘bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)’: layer3/Executive.cpp:5951:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=] 5951 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G); | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 311 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5950:7: note: in expansion of macro ‘PRINTFB’ 5950 | PRINTFB(G, FB_Executive, FB_Details) | ^~~~~~~ layer3/Executive.cpp:5942:46: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=] 5942 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__, | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 84 and 339 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5941:7: note: in expansion of macro ‘PRINTFB’ 5941 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-x86_64-3.10/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int, pymol::zstring_view)’: layer3/Executive.cpp:9358:53: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=] 9358 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 35 and 300 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9357:17: note: in expansion of macro ‘PRINTFB’ 9357 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp:9371:67: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=] 9371 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt, | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 314 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9370:17: note: in expansion of macro ‘PRINTFB’ 9370 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp:9383:59: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=] 9383 | " Unbond: %d bonds removed from model \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 41 and 306 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9382:17: note: in expansion of macro ‘PRINTFB’ 9382 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer2/ObjectSurface.cpp: In function ‘void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)’: layer2/ObjectSurface.cpp:268:30: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] 268 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSurface.cpp:35: layer0/Feedback.h:274:15: note: ‘snprintf’ output 34 or more bytes (assuming 289) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSurface.cpp:267:7: note: in expansion of macro ‘PRINTFB’ 267 | PRINTFB(I->G, FB_ObjectSurface, FB_Actions) | ^~~~~~~ layer2/ObjectSurface.cpp: In member function ‘virtual void ObjectSurface::update()’: layer2/ObjectSurface.cpp:493:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] 493 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSurface.cpp:35: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSurface.cpp:492:13: note: in expansion of macro ‘PRINTFB’ 492 | PRINTFB(I->G, FB_ObjectSurface, FB_Details) | ^~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, pymol::zstring_view, int, int, int)’: layer3/Executive.cpp:11877:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] 11877 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11876:25: note: in expansion of macro ‘PRINTF’ 11876 | PRINTF | ^~~~~~ layer3/Executive.cpp:11877:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] 11877 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11876:25: note: in expansion of macro ‘PRINTF’ 11876 | PRINTF | ^~~~~~ layer3/Executive.cpp:11788:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11788 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~ 11789 | name, value, nObj, state + 1 ENDF(G); | ~~~~~ layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647] 11788 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647] In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1084) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11787:19: note: in expansion of macro ‘PRINTF’ 11787 | PRINTF | ^~~~~~ layer3/Executive.cpp:11785:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); | ^~ ~~~~~ layer3/Executive.cpp:11785:21: note: directive argument in the range [1, 2147483647] 11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1066) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11784:19: note: in expansion of macro ‘PRINTF’ 11784 | PRINTF | ^~~~~~ layer3/Executive.cpp:11909:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11909 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 11910 | name, value, rec->obj->Name, state + 1 ENDF(G); | ~~~~~ layer3/Executive.cpp:11909:25: note: directive argument in the range [1, 2147483647] 11909 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1330) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11908:23: note: in expansion of macro ‘PRINTF’ 11908 | PRINTF | ^~~~~~ layer3/Executive.cpp:11902:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11902 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 11903 | name, value, rec->obj->Name ENDF(G); | ~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1312) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11901:23: note: in expansion of macro ‘PRINTF’ 11901 | PRINTF | ^~~~~~ layer3/Executive.cpp:11744:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); | ^~ ~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 21 or more bytes (assuming 1044) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11744:11: note: in expansion of macro ‘PRINTF’ 11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); | ^~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-x86_64-3.10/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function ‘void ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)’: layer3/Executive.cpp:14447:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] 14447 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 73 and 328 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:14446:7: note: in expansion of macro ‘PRINTFB’ 14446 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp:14442:36: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] 14442 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 61 and 316 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:14441:7: note: in expansion of macro ‘PRINTFB’ 14441 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp:14473:11: warning: ‘char* strcpy(char*, const char*)’ writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 14473 | strcpy(rec->name, obj->Name); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘void ExecutiveManageSelection(PyMOLGlobals*, const char*)’: layer3/Executive.cpp:14559:11: warning: ‘char* strcpy(char*, const char*)’ writing 1 or more bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 14559 | strcpy(rec->name, name); | ~~~~~~^~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In member function ‘virtual int CExecutive::drag(int, int, int)’: layer3/Executive.cpp:15471:55: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", | ^~ 15472 | order_input, (location == -2) ? "upper" : "current"); | ~~~~~~~~~~~ layer3/Executive.cpp:15471:26: note: ‘sprintf’ output between 32 and 1057 bytes into a destination of size 1024 15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 15472 | order_input, (location == -2) ? "upper" : "current"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)’: layer3/Executive.cpp:12338:68: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=] 12338 | " Setting: %s unset for %d atoms in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 44 or more bytes (assuming 299) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12337:21: note: in expansion of macro ‘PRINTF’ 12337 | PRINTF | ^~~~~~ layer3/Executive.cpp:12360:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] 12360 | " Setting: %s unset in object \"%s\", state %d.\n", | ^~ layer3/Executive.cpp:12360:25: note: directive argument in the range [1, 2147483647] 12360 | " Setting: %s unset in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 41 or more bytes (assuming 305) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12359:23: note: in expansion of macro ‘PRINTF’ 12359 | PRINTF | ^~~~~~ layer3/Executive.cpp:12354:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] 12354 | " Setting: %s unset in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 32 or more bytes (assuming 287) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12353:23: note: in expansion of macro ‘PRINTF’ 12353 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)’: layer3/Executive.cpp:9665:25: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] 9665 | " Executive: object %s created.\n", oDst->Name ENDFB(G); | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9664:3: note: in expansion of macro ‘PRINTFB’ 9664 | PRINTFB(G, FB_Executive, FB_Actions) | ^~~~~~~ layer2/ObjectVolume.cpp: In function ‘ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)’: layer2/ObjectVolume.cpp:74:33: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] 74 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 46 and 301 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’: layer3/Selector.cpp:1722:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] 1722 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from layer3/Selector.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 59 and 324 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)’: layer3/Executive.cpp:2259:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] 2259 | " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 36 and 546 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:2258:17: note: in expansion of macro ‘PRINTFB’ 2258 | PRINTFB(G, FB_Executive, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result > ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)’: layer3/Executive.cpp:3523:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=] 3523 | " Warning: Invalid characters in '%s' have been replaced or stripped\n", | ^~ 3524 | name ENDFB(G); | ~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 67 and 322 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:3522:5: note: in expansion of macro ‘PRINTFB’ 3522 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-x86_64-3.10/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function ‘int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)’: layer3/Executive.cpp:5070:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=] 5070 | " Executive: skipping unrecognized object \"%s\" of type %d.\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 321 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5069:11: note: in expansion of macro ‘PRINTFB’ 5069 | PRINTFB(G, FB_Executive, FB_Errors) | ^~~~~~~ layer3/Executive.cpp:5095:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=] 5095 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G); | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 304 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5094:9: note: in expansion of macro ‘PRINTFB’ 5094 | PRINTFB(G, FB_Executive, FB_Errors) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-x86_64-3.10/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-x86_64-3.10/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-x86_64-3.10/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-x86_64-3.10/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/SpecRec.cpp -o build/temp.linux-x86_64-3.10/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.10 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-x86_64-3.10/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/build/generated/ShaderText.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-x86_64-3.10/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-x86_64-3.10/layer0/Block.o build/temp.linux-x86_64-3.10/layer0/CarveHelper.o build/temp.linux-x86_64-3.10/layer0/ContourSurf.o build/temp.linux-x86_64-3.10/layer0/Crystal.o build/temp.linux-x86_64-3.10/layer0/Deferred.o build/temp.linux-x86_64-3.10/layer0/Err.o build/temp.linux-x86_64-3.10/layer0/Feedback.o build/temp.linux-x86_64-3.10/layer0/Field.o build/temp.linux-x86_64-3.10/layer0/File.o build/temp.linux-x86_64-3.10/layer0/GenericBuffer.o build/temp.linux-x86_64-3.10/layer0/GraphicsUtil.o build/temp.linux-x86_64-3.10/layer0/Isosurf.o build/temp.linux-x86_64-3.10/layer0/Map.o build/temp.linux-x86_64-3.10/layer0/Match.o build/temp.linux-x86_64-3.10/layer0/Matrix.o build/temp.linux-x86_64-3.10/layer0/MemoryDebug.o build/temp.linux-x86_64-3.10/layer0/MemoryUsage.o build/temp.linux-x86_64-3.10/layer0/MyPNG.o build/temp.linux-x86_64-3.10/layer0/Parse.o build/temp.linux-x86_64-3.10/layer0/Pixmap.o build/temp.linux-x86_64-3.10/layer0/PostProcess.o build/temp.linux-x86_64-3.10/layer0/ShaderMgr.o 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build/temp.linux-x86_64-3.10/layer1/SceneRender.o build/temp.linux-x86_64-3.10/layer1/ScrollBar.o build/temp.linux-x86_64-3.10/layer1/Seq.o build/temp.linux-x86_64-3.10/layer1/Setting.o build/temp.linux-x86_64-3.10/layer1/Shaker.o build/temp.linux-x86_64-3.10/layer1/SymOp.o build/temp.linux-x86_64-3.10/layer1/SymOpPConv.o build/temp.linux-x86_64-3.10/layer1/SymOpTools.o build/temp.linux-x86_64-3.10/layer1/Symmetry.o build/temp.linux-x86_64-3.10/layer1/Text.o build/temp.linux-x86_64-3.10/layer1/TypeFace.o build/temp.linux-x86_64-3.10/layer1/View.o build/temp.linux-x86_64-3.10/layer1/Wizard.o build/temp.linux-x86_64-3.10/layer2/AssemblyHelpers.o build/temp.linux-x86_64-3.10/layer2/AtomInfo.o build/temp.linux-x86_64-3.10/layer2/AtomInfoHistory.o build/temp.linux-x86_64-3.10/layer2/BondTypeHistory.o build/temp.linux-x86_64-3.10/layer2/CifFile.o build/temp.linux-x86_64-3.10/layer2/CifMoleculeReader.o build/temp.linux-x86_64-3.10/layer2/CoordSet.o build/temp.linux-x86_64-3.10/layer2/DistSet.o build/temp.linux-x86_64-3.10/layer2/GadgetSet.o build/temp.linux-x86_64-3.10/layer2/HydrogenAdder.o build/temp.linux-x86_64-3.10/layer2/MmodTyping.o build/temp.linux-x86_64-3.10/layer2/MmtfMoleculeReader.o build/temp.linux-x86_64-3.10/layer2/Mol2Typing.o build/temp.linux-x86_64-3.10/layer2/MolV3000.o build/temp.linux-x86_64-3.10/layer2/ObjectAlignment.o build/temp.linux-x86_64-3.10/layer2/ObjectCGO.o build/temp.linux-x86_64-3.10/layer2/ObjectCallback.o build/temp.linux-x86_64-3.10/layer2/ObjectDist.o build/temp.linux-x86_64-3.10/layer2/ObjectGadget.o build/temp.linux-x86_64-3.10/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-3.10/layer2/ObjectGroup.o build/temp.linux-x86_64-3.10/layer2/ObjectMap.o build/temp.linux-x86_64-3.10/layer2/ObjectMesh.o build/temp.linux-x86_64-3.10/layer2/ObjectMolecule.o build/temp.linux-x86_64-3.10/layer2/ObjectMolecule2.o build/temp.linux-x86_64-3.10/layer2/ObjectMolecule3.o build/temp.linux-x86_64-3.10/layer2/ObjectSlice.o build/temp.linux-x86_64-3.10/layer2/ObjectSurface.o build/temp.linux-x86_64-3.10/layer2/ObjectVolume.o build/temp.linux-x86_64-3.10/layer2/RepAngle.o build/temp.linux-x86_64-3.10/layer2/RepCartoon.o build/temp.linux-x86_64-3.10/layer2/RepCylBond.o build/temp.linux-x86_64-3.10/layer2/RepDihedral.o build/temp.linux-x86_64-3.10/layer2/RepDistDash.o build/temp.linux-x86_64-3.10/layer2/RepDistLabel.o build/temp.linux-x86_64-3.10/layer2/RepDot.o build/temp.linux-x86_64-3.10/layer2/RepEllipsoid.o build/temp.linux-x86_64-3.10/layer2/RepLabel.o build/temp.linux-x86_64-3.10/layer2/RepMesh.o build/temp.linux-x86_64-3.10/layer2/RepNonbonded.o build/temp.linux-x86_64-3.10/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-3.10/layer2/RepRibbon.o build/temp.linux-x86_64-3.10/layer2/RepSphere.o build/temp.linux-x86_64-3.10/layer2/RepSphereGenerate.o build/temp.linux-x86_64-3.10/layer2/RepSphereImmediate.o build/temp.linux-x86_64-3.10/layer2/RepSurface.o build/temp.linux-x86_64-3.10/layer2/RepWireBond.o build/temp.linux-x86_64-3.10/layer2/Sculpt.o build/temp.linux-x86_64-3.10/layer2/SculptCache.o build/temp.linux-x86_64-3.10/layer2/SideChainHelper.o build/temp.linux-x86_64-3.10/layer2/VFont.o build/temp.linux-x86_64-3.10/layer3/AtomIterators.o build/temp.linux-x86_64-3.10/layer3/CifDataValueFormatter.o build/temp.linux-x86_64-3.10/layer3/Editor.o build/temp.linux-x86_64-3.10/layer3/Executive.o build/temp.linux-x86_64-3.10/layer3/ExecutivePython.o build/temp.linux-x86_64-3.10/layer3/MaeExportHelpers.o build/temp.linux-x86_64-3.10/layer3/MoleculeExporter.o build/temp.linux-x86_64-3.10/layer3/MovieScene.o build/temp.linux-x86_64-3.10/layer3/PlugIOManager.o build/temp.linux-x86_64-3.10/layer3/RingFinder.o build/temp.linux-x86_64-3.10/layer3/Seeker.o build/temp.linux-x86_64-3.10/layer3/Selector.o build/temp.linux-x86_64-3.10/layer3/SelectorTmp.o build/temp.linux-x86_64-3.10/layer3/SpecRec.o build/temp.linux-x86_64-3.10/layer3/SpecRecSpecial.o build/temp.linux-x86_64-3.10/layer4/Cmd.o build/temp.linux-x86_64-3.10/layer4/Menu.o build/temp.linux-x86_64-3.10/layer4/PopUp.o build/temp.linux-x86_64-3.10/layer5/PyMOL.o build/temp.linux-x86_64-3.10/layer5/TestPyMOL.o build/temp.linux-x86_64-3.10/layer5/main.o build/temp.linux-x86_64-3.10/ov/src/OVContext.o build/temp.linux-x86_64-3.10/ov/src/OVHeap.o build/temp.linux-x86_64-3.10/ov/src/OVHeapArray.o build/temp.linux-x86_64-3.10/ov/src/OVLexicon.o build/temp.linux-x86_64-3.10/ov/src/OVOneToAny.o build/temp.linux-x86_64-3.10/ov/src/OVOneToOne.o build/temp.linux-x86_64-3.10/ov/src/OVRandom.o build/temp.linux-x86_64-3.10/ov/src/ov_utility.o -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/_cmd.cpython-310-x86_64-linux-gnu.so -fopenmp building 'chempy.champ._champ' extension creating build/temp.linux-x86_64-3.10/contrib/champ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/champ.c -o build/temp.linux-x86_64-3.10/contrib/champ/champ.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-x86_64-3.10/contrib/champ/champ_module.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/chiral.c -o build/temp.linux-x86_64-3.10/contrib/champ/chiral.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/err2.c -o build/temp.linux-x86_64-3.10/contrib/champ/err2.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-x86_64-3.10/contrib/champ/feedback2.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/list.c -o build/temp.linux-x86_64-3.10/contrib/champ/list.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-x86_64-3.10/contrib/champ/os_memory.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/strblock.c -o build/temp.linux-x86_64-3.10/contrib/champ/strblock.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/sort.c -o build/temp.linux-x86_64-3.10/contrib/champ/sort.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.10 -c -MMD contrib/champ/vla.c -o build/temp.linux-x86_64-3.10/contrib/champ/vla.o contrib/champ/os_memory.c: In function ‘OSMemoryZero’: contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 55 | while(count&&(((int)p)&mask)) { | ^ contrib/champ/os_memory.c: In function ‘OSMemoryHashAdd’: contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 137 | hash=(int)rec; | ^ contrib/champ/os_memory.c: In function ‘OSMemoryHashRemove’: contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 150 | hash=(int)rec; | ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/contrib/champ/champ.o build/temp.linux-x86_64-3.10/contrib/champ/champ_module.o build/temp.linux-x86_64-3.10/contrib/champ/chiral.o build/temp.linux-x86_64-3.10/contrib/champ/err2.o build/temp.linux-x86_64-3.10/contrib/champ/feedback2.o build/temp.linux-x86_64-3.10/contrib/champ/list.o build/temp.linux-x86_64-3.10/contrib/champ/os_memory.o build/temp.linux-x86_64-3.10/contrib/champ/sort.o build/temp.linux-x86_64-3.10/contrib/champ/strblock.o build/temp.linux-x86_64-3.10/contrib/champ/vla.o -o /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ/_champ.cpython-310-x86_64-linux-gnu.so I: pybuild base:237: /usr/bin/python3 setup.py build running build running build_py creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/arc.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/bond_amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/bond_mmff.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/bonds.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/brick.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/cc1.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/charge.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/cif.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/cpv.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/dictdb.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/gamess1.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/gms.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/hetatm.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/io.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/lst.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/mae.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/map.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/mass.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/mmd.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/models.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/mol.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/mol2.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/neighbor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/pdb.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/pkl.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/place.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/protein.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/protein_amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/protein_amber99.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/protein_mmff.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/protein_residues.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/sdf.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/solvate.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/water_amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/water_residues.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/xyz.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin copying modules/chempy/bmin/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin copying modules/chempy/bmin/commands.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin copying modules/chempy/bmin/realtime.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin copying modules/chempy/bmin/state.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin copying modules/chempy/bmin/util.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ copying modules/chempy/champ/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ copying modules/chempy/champ/amber99.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ copying modules/chempy/champ/assign.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ copying modules/chempy/champ/formal_charges.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast copying modules/chempy/fast/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments copying modules/chempy/fragments/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf copying modules/chempy/mmtf/io.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker copying modules/chempy/tinker/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker copying modules/chempy/tinker/amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker copying modules/chempy/tinker/keyword.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker copying modules/chempy/tinker/realtime.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker copying modules/chempy/tinker/state.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/TextEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/builder.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/file_dialogs.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/keymapping.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/mimic_pmg_tk.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/mimic_tk.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/properties_dialog.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/pymol_gl_widget.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/shortcut_menu_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/volume.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/python.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/ColorEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/Demo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/PMGApp.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/SetEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/Setting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/TextEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/volume.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins copying modules/pmg_tk/skins/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/__main__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/api.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/callback.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/cgo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/checking.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/cmd.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/colorprinting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/colorramping.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/commanding.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/completing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/computing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/constants.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/constants_palette.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/controlling.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/creating.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/diagnosing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/editing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/editor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/experimenting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/exporting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/externing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/feedingback.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/fitting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/headering.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/helping.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/importing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/internal.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/invocation.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/keyboard.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/keywords.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/lazyio.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/locking.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/menu.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/monitoring.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/morphing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/movie.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/moving.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/mpeg_encode.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/parser.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/parsing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/preset.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/pymolhttpd.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/querying.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/rpc.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/save_shortcut.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/selecting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/selector.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/seqalign.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/setting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/shortcut.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/shortcut_dict.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/shortcut_manager.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/util.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/vfont.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/viewing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/wizarding.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/xray.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/xwin.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/povray.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt copying modules/pymol/Qt/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt copying modules/pymol/Qt/utils.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins copying modules/pymol/plugins/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins copying modules/pymol/plugins/installation.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui_qt.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins copying modules/pymol/plugins/repository.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry copying modules/pymol/stereochemistry/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/annotation.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/appearance.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/benchmark.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/box.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/charge.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/cleanup.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/command.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/demo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/density.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/distance.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/dragging.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/filter.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/label.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/measurement.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/message.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/openvr.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/renaming.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/sculpting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/security.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/toggle.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2 copying modules/pymol2/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2 copying modules/pymol2/cmd2.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2 copying modules/pmg_qt/forms/askpartial.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/change_confirm.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/colors.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/create_shortcut.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/fetch.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/help_shortcut.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_aln.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_map.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mtz.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/movieexport.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginitem.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/props.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/render.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_object.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/shortcut_menu.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/build creating build/temp.linux-x86_64-3.9/build/generated creating build/temp.linux-x86_64-3.9/contrib creating build/temp.linux-x86_64-3.9/contrib/uiuc creating build/temp.linux-x86_64-3.9/contrib/uiuc/plugins creating build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.linux-x86_64-3.9/layer0 creating build/temp.linux-x86_64-3.9/layer1 creating build/temp.linux-x86_64-3.9/layer2 creating build/temp.linux-x86_64-3.9/layer3 creating build/temp.linux-x86_64-3.9/layer4 creating build/temp.linux-x86_64-3.9/layer5 creating build/temp.linux-x86_64-3.9/ov creating build/temp.linux-x86_64-3.9/ov/src x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-x86_64-3.9/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS); | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 273 | if(ok) { | ^~ In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function] 133 | static int get_pte_idx(const char *label) | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS); | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 413 | return ok; | ^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’: contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable] 103 | int i, numatoms; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘write_timestep’: contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 206 | if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function ‘void* open_grid_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 84 | fread(&dataBegin, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:23, from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31: In function ‘strncpy’, inlined from ‘get_pdb_cryst1’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:277:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:41: In function ‘strncpy’, inlined from ‘read_tinker_structure’ at contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function ‘write_psf_structure’: contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 782 | if (strlen(atoms[i].type) > fw) { | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30: At top level: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: ‘fortread_4’ defined but not used [-Wunused-function] 103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) { | ^~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘fort_get_endian_reclen’ defined but not used [-Wunused-function] 55 | static int fort_get_endian_reclen(int reclen, int word0, int word1, | ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘fort_eat_recmark’ defined but not used [-Wunused-function] 36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) { | ^~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28, from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘swap8_aligned’ defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_readline’: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 279 | for (i = 0; i < strlen(line); ++i) { | ^ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_structure’: contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 730 | if (len > sizeof(name)) { | ^ contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_timestep’: contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) { | ^ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 102 | fread(&headersize, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_header’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5, inlined from ‘open_pdb_read’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_header’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5, inlined from ‘open_pdb_read’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 175 | fgets(readbuf, 1023, cube->fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 181 | fgets(readbuf, 1023, cube->fd); // skip second header line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 326 | fgets(readbuf, 1023, cube->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 337 | fgets(readbuf, 1023, cube->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 339 | fscanf(cube->fd, "%d", &cube->nsets); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 344 | fscanf(cube->fd, "%d", &orb); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)’: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 278 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 297 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 319 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 357 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 223 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 241 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 164 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 176 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 183 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 426 | fgets(buf, n, mf->f); | ~~~~~^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fgets(readbuf, 13, edm->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44 | fgets(readbuf, 1024, fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread(brick, sizeof(char), 512, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fscanf(fd, "%3s", keyWord); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 123 | fscanf(fd, " %s %f", keyWord, &prod); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 128 | fscanf(fd, " %s %f", keyWord, &plus); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 135 | fscanf(fd, " %s %f", keyWord, &sigma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable] 443 | int i, uid; | ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 275 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 289 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 127 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 138 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 74 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 82 | fgets(line, LINESIZE, fd); // Read the molecule info | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fgets(line, LINESIZE, fd); // Read the charge_type | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable] 484 | int i, count, atomdata, pos, idx, xyzcount, j; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable] 503 | char oldChain[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable] 803 | int bondTable[32]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable] 807 | int i, pos, j, k; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable] 811 | char modelNum[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable] 822 | molfile_atom_t * atom; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable] 884 | int test = parser->nbonds + bnum; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable] 984 | int bondTable[32]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable] 988 | int i, pos, j, k; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable] 991 | char modelNum[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable] 1002 | molfile_atom_t * atom; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable] 1409 | FILE* fd; | ^~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 519 | if (rc != iov[i].iov_len) | ^~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] 127 | sprintf(atom->resname, "%d", resid); | ^~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] 127 | sprintf(atom->resname, "%d", resid); | ^~~~ In file included from /usr/include/stdio.h:866, from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 8 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdheader’: x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’: contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable] 48 | double timesteprst; | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { | ^~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 222 | if (input_integer[0] != dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’: contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable] 546 | fio_size_t readlen; /* number of bytes actually read */ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60: At top level: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function] 609 | static int fio_write_str(fio_fd fd, const char *str) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function] 605 | static int fio_read_int32(fio_fd fd, int *i) { | ^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function] 459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { | ^~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function] 111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 545 | for (i=0; ititle, sizeof(prm->title), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 427 | fgets(sdum, sizeof(sdum), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 439 | fscanf(file,parm7, | ~~~~~~^~~~~~~~~~~~ 440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 | &prm->Jparm, &prm->Nparm); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 443 | fscanf(file, parm7, | ~~~~~~^~~~~~~~~~~~~ 444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 | &prm->Natyp, &prm->Nphb); | ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 451 | fscanf(file,"%8d",&prm->Numextra); //BB | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 87 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fread(&dataBegin, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 304 | fgets(symData, 81, fd); | ~~~~~^~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from /usr/include/string.h:519, from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:34: In function ‘strncpy’, inlined from ‘read_molden_structure’ at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_molden_structure’ at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_molden_structure’ at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_molden_structure’ at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 545 | for (i=0; ifile)) | ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 295 | if (NULL == fgets(fbuffer, 1024, data->file)) | ^~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’: contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 96 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 104 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 131 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 162 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 171 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:155: In function ‘strncpy’, inlined from ‘read_gamess_structure’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:477:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_gamess_structure’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:478:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 435 | fscanf(file, " " DBLFMT, &prm->Charges[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 444 | fscanf(file, " " DBLFMT, &prm->Masses[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 510 | fscanf(file, " " DBLFMT, &prm->Rk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(file, " " DBLFMT, &prm->Req[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 524 | fscanf(file, " " DBLFMT, &prm->Tk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 531 | fscanf(file, " " DBLFMT, &prm->Teq[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 538 | fscanf(file, " " DBLFMT, &prm->Pk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 545 | fscanf(file, " " DBLFMT, &prm->Pn[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 552 | fscanf(file, " " DBLFMT, &prm->Phase[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 559 | fscanf(file, " " DBLFMT, &prm->Solty[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 756 | fscanf(file, " " DBLFMT, &prm->HB12[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 763 | fscanf(file, " " DBLFMT, &prm->HB6[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 771 | fscanf(file, " " DBLFMT, &H[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 | &prm->Natcap, &prm->Cutcap, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 | &prm->Xcap, &prm->Ycap, &prm->Zcap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:34: In function ‘strncpy’, inlined from ‘read_dlpoly_config_structure’ at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_gamess_rundata’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_gamess_rundata’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_gamess_rundata’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_gamess_rundata’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In function ‘strncpy’, inlined from ‘read_dlpoly_structure’ at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 545 | for (i=0; itype, sizeof(atom->type)); | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 519 | if (rc != iov[i].iov_len) | ^~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | fread(intHeader, sizeof(int), 5, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 82 | fread(floatHeader, sizeof(float), 6, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘get_basis_options’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:135:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation] 135 | return __builtin___strncat_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘get_basis_options’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:135:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation] 135 | return __builtin___strncat_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Deferred.cpp -o build/temp.linux-x86_64-3.9/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89: At top level: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function] 459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { | ^~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 233 | fread(brick, sizeof(char), 512, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fread(fileHeader, sizeof(short), 19, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable] 459 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable] 1407 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable] 1541 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1629 | fread (&len, sizeof(int), 1, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1631 | fread (str, len, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2057 | fread (ptr, 1, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2063 | fread (ptr, 1, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2069 | fread (ptr, 2, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2075 | fread (ptr, 2, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2081 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2087 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2093 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2099 | fread (ptr, 8, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 238 | fgets(readbuf, 1024, fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 408 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 442 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 444 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 446 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 448 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 450 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 473 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 508 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_timestep(void*, int, molfile_timestep_t*)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 328 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 346 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 355 | fgets(nextline, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 419 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 194 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 203 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 59 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Err.cpp -o build/temp.linux-x86_64-3.9/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’: contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 116 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 132 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 149 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 161 | fgets(line, 80, infile); //one more read to keep us in sync | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 170 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 217 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 256 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘char* recreate_command_line(int, char**)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1334 | line[0] = '\0'; | ~~~~~~~~^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’ 1333 | line = (char *) malloc (sizeof(char) * len); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In function ‘strncpy’, inlined from ‘get_fmoxyz’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5, inlined from ‘get_input_structure’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1537:12: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-x86_64-3.9/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from /usr/include/string.h:519, from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:53: In function ‘strncpy’, inlined from ‘read_xyz_structure’ at contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_xyz_structure’ at contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:127:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MemoryUsage.cpp -o build/temp.linux-x86_64-3.9/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-x86_64-3.9/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Feedback.cpp -o build/temp.linux-x86_64-3.9/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Block.cpp -o build/temp.linux-x86_64-3.9/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In function ‘strncpy’, inlined from ‘get_proc_mem.isra’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_proc_mem.isra’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-x86_64-3.9/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 166 | char *name, *type; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable] 166 | char *name, *type; | ^~~~ In function ‘strncpy’, inlined from ‘get_contrl’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:34: In function ‘strncpy’, inlined from ‘get_pqr_cryst1’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3, inlined from ‘read_pqr_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:319:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3, inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3, inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3, inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3, inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Util.cpp -o build/temp.linux-x86_64-3.9/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from /usr/include/stdio.h:866, from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:29: In function ‘sprintf’, inlined from ‘vtf_error’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:3, inlined from ‘vtf_read_bonds’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1203:5, inlined from ‘vtf_read_bonds’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1193:12: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_contrl_firefly’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:32: In function ‘strncat’, inlined from ‘vtf_parse_atom’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9, inlined from ‘vtf_parse_structure’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24, inlined from ‘_vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5, inlined from ‘vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:135:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation] 135 | return __builtin___strncat_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘vtf_parse_atom’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7, inlined from ‘vtf_parse_structure’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24, inlined from ‘_vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5, inlined from ‘vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:135:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation] 135 | return __builtin___strncat_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/MemoryUsage.cpp: In function ‘size_t pymol::memory_usage()’: layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=] 38 | std::fscanf(fp, "%*zu%zu", &vmRSS); | ^~~~~~~~~ In function ‘strncpy’, inlined from ‘symmetry_expand’ at contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5, inlined from ‘get_traj_frame.constprop’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2931:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Field.cpp -o build/temp.linux-x86_64-3.9/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 38 | std::fscanf(fp, "%*zu%zu", &vmRSS); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-x86_64-3.9/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’: contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Util2.cpp -o build/temp.linux-x86_64-3.9/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/CarveHelper.cpp -o build/temp.linux-x86_64-3.9/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable] 1904 | int last_ctnumber = -1; | ^~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 288 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 297 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 365 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 387 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 395 | fgets(nextline, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 455 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 241 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 250 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 72 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Sphere.cpp -o build/temp.linux-x86_64-3.9/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 186 | fread(line3, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’ 284 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 285 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’ 291 | TRASH; | ^~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Parse.cpp -o build/temp.linux-x86_64-3.9/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’ 305 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 306 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’ 307 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’ 311 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’ 313 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’ 318 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 319 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’ 320 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’ 328 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 329 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’ 330 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’ 354 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 355 | fread(vertex, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’ 356 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’ 357 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 358 | fread(access, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’ 359 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’ 360 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 361 | fread(normal, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’ 362 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’ 371 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | fread(triangle, 3 * sizeof(int), ntriangles, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’ 373 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’ 374 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 375 | fread(properties, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’ 394 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 395 | fread(striangle, sizeof(short), 3 * ntriangles, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’ 396 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’ 397 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 398 | fread(properties, sizeof(float), 3 * nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Vector.cpp -o build/temp.linux-x86_64-3.9/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-x86_64-3.9/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/os_gl.cpp -o build/temp.linux-x86_64-3.9/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ContourSurf.cpp -o build/temp.linux-x86_64-3.9/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Basis.cpp -o build/temp.linux-x86_64-3.9/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-x86_64-3.9/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-x86_64-3.9/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Color.cpp -o build/temp.linux-x86_64-3.9/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘void DDmkdir(const string&, mode_t, int, int)’: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 714 | sprintf(sub, "%03x/", i); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646] 714 | sprintf(sub, "%03x/", i); | ^~~~~~~ In file included from /usr/include/stdio.h:866, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 6 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 722 | sprintf(subsub, "%03x", j); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646] 722 | sprintf(subsub, "%03x", j); | ^~~~~~ In file included from /usr/include/stdio.h:866, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 4 and 9 bytes into a destination of size 6 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘std::string framefile(const string&, size_t, size_t, int, int)’: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 675 | sprintf(answer, "%03x/", d1); | ^ In file included from /usr/include/stdio.h:866, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 9 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646] 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 9 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/File.cpp -o build/temp.linux-x86_64-3.9/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Word.cpp -o build/temp.linux-x86_64-3.9/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Crystal.cpp -o build/temp.linux-x86_64-3.9/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-x86_64-3.9/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-x86_64-3.9/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-x86_64-3.9/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Map.cpp -o build/temp.linux-x86_64-3.9/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-x86_64-3.9/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ccealignmodule.cpp -o build/temp.linux-x86_64-3.9/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Texture.cpp -o build/temp.linux-x86_64-3.9/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-x86_64-3.9/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Ortho.cpp -o build/temp.linux-x86_64-3.9/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-x86_64-3.9/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ButMode.cpp -o build/temp.linux-x86_64-3.9/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontType.cpp -o build/temp.linux-x86_64-3.9/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Ray.cpp -o build/temp.linux-x86_64-3.9/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Tracker.cpp -o build/temp.linux-x86_64-3.9/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Match.cpp -o build/temp.linux-x86_64-3.9/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Movie.cpp -o build/temp.linux-x86_64-3.9/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-x86_64-3.9/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Triangle.cpp -o build/temp.linux-x86_64-3.9/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Matrix.cpp -o build/temp.linux-x86_64-3.9/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer1/Ray.cpp: In function ‘void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)’: layer1/Ray.cpp:1535:20: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=] 1535 | "%s" | ^~ ...... 1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); | ~~~~~~~~ layer1/Ray.cpp:1530:18: note: ‘sprintf’ output between 116 and 3302 bytes into a destination of size 1024 1530 | sprintf(buffer, | ~~~~~~~^~~~~~~~ 1531 | "Transform {\n" | ~~~~~~~~~~~~~~~ 1532 | " translation %8.6f %8.6f %8.6f\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1533 | " rotation %8.6f %8.6f %8.6f %8.6f\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1534 | " children [\n" | ~~~~~~~~~~~~~~~ 1535 | "%s" | ~~~~ 1536 | " ]\n" | ~~~~~~ 1537 | "}\n", | ~~~~~~ 1538 | vert2[0] - mid[0], | ~~~~~~~~~~~~~~~~~~ 1539 | vert2[1] - mid[1], | ~~~~~~~~~~~~~~~~~~ 1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/CGO.cpp -o build/temp.linux-x86_64-3.9/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/marching_cubes.cpp -o build/temp.linux-x86_64-3.9/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/P.cpp -o build/temp.linux-x86_64-3.9/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-x86_64-3.9/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SymOpPConv.cpp -o build/temp.linux-x86_64-3.9/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Wizard.cpp -o build/temp.linux-x86_64-3.9/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-x86_64-3.9/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SymOpTools.cpp -o build/temp.linux-x86_64-3.9/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Seq.cpp -o build/temp.linux-x86_64-3.9/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-x86_64-3.9/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Rep.cpp -o build/temp.linux-x86_64-3.9/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-x86_64-3.9/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer1/Wizard.cpp: In member function ‘virtual int CWizard::release(int, int, int, int)’: layer1/Wizard.cpp:571:18: warning: unused variable ‘wiz’ [-Wunused-variable] 571 | if (auto wiz = WizardGet(G)) { | ^~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-x86_64-3.9/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-x86_64-3.9/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-x86_64-3.9/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Scene.cpp -o build/temp.linux-x86_64-3.9/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/PConv.cpp -o build/temp.linux-x86_64-3.9/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Control.cpp -o build/temp.linux-x86_64-3.9/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Setting.cpp -o build/temp.linux-x86_64-3.9/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-x86_64-3.9/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Text.cpp -o build/temp.linux-x86_64-3.9/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-x86_64-3.9/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Picking.cpp -o build/temp.linux-x86_64-3.9/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Extrude.cpp -o build/temp.linux-x86_64-3.9/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Pop.cpp -o build/temp.linux-x86_64-3.9/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-x86_64-3.9/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-x86_64-3.9/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Font.cpp -o build/temp.linux-x86_64-3.9/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-x86_64-3.9/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-x86_64-3.9/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CifFile.cpp -o build/temp.linux-x86_64-3.9/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneMouse.cpp -o build/temp.linux-x86_64-3.9/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-x86_64-3.9/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-x86_64-3.9/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-x86_64-3.9/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDot.cpp -o build/temp.linux-x86_64-3.9/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-x86_64-3.9/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer1/SceneMouse.cpp: In function ‘void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)’: layer1/SceneMouse.cpp:455:32: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=] 455 | " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G); | ^~ ~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/ostream:38, from include/pymol/zstring_view.h:12, from layer1/SceneMouse.h:4, from layer1/SceneMouse.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output 21 or more bytes (assuming 276) into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-x86_64-3.9/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-x86_64-3.9/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-x86_64-3.9/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-x86_64-3.9/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMolecule.cpp: In function ‘CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)’: layer2/ObjectMolecule.cpp:7579:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=] 7579 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G) | ^~ ~~~~~~~ In file included from layer1/Ortho.h:32, from layer2/ObjectMolecule.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 34 and 289 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMolecule.cpp:7578:3: note: in expansion of macro ‘PRINTFB’ 7578 | PRINTFB(G, FB_ObjectMolecule, FB_Blather) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-x86_64-3.9/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-x86_64-3.9/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/View.cpp -o build/temp.linux-x86_64-3.9/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/DistSet.cpp -o build/temp.linux-x86_64-3.9/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Shaker.cpp -o build/temp.linux-x86_64-3.9/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-x86_64-3.9/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-x86_64-3.9/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMap.cpp: In function ‘void ObjectMapDump(const ObjectMap*, const char*, int, int)’: layer2/ObjectMap.cpp:5982:24: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=] 5982 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G); | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output 30 or more bytes (assuming 285) into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-x86_64-3.9/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-x86_64-3.9/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMolecule.cpp: In member function ‘virtual void ObjectMolecule::update()’: layer2/ObjectMolecule.cpp:10605:82: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] 10605 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer2/ObjectMolecule.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 68 and 333 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMolecule.cpp:10604:13: note: in expansion of macro ‘PRINTFB’ 10604 | PRINTFB(G, FB_ObjectMolecule, FB_Blather) | ^~~~~~~ layer2/ObjectMolecule.cpp: In function ‘int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)’: layer2/ObjectMolecule.cpp:10731:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ^~ 10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0); | ~~~~~~ layer2/ObjectMolecule.cpp:10731:21: note: directive argument in the range [-2147483647, 2147483647] 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp:10731:14: note: ‘sprintf’ output between 78 and 2036 bytes into a destination of size 1024 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-x86_64-3.9/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SymOp.cpp -o build/temp.linux-x86_64-3.9/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-x86_64-3.9/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer1/SymOp.cpp: In member function ‘std::string pymol::SymOp::to_string() const’: layer1/SymOp.cpp:37:32: warning: ‘%d’ directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=] 37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5); | ^~ layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132] 37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5); | ^~~~~~~~~~~ layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132] In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from layer1/SymOp.h:9, from layer1/SymOp.cpp:7: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 6 and 17 bytes into a destination of size 8 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Editor.cpp -o build/temp.linux-x86_64-3.9/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-x86_64-3.9/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-x86_64-3.9/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-x86_64-3.9/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’: layer2/ObjectMap.cpp:2961:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2961 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2970:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2970 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2976:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2976 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:3058:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 3058 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’: layer2/ObjectMap.cpp:4290:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] 4290 | " ObjectMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:4290:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] 4290 | " ObjectMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer3/Editor.cpp: In function ‘void EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)’: layer3/Editor.cpp:1933:29: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] 1933 | " Editor: grabbing (%s).", name ENDFB(G); | ^~ ~~~~ In file included from layer1/Ortho.h:32, from layer1/ButMode.h:20, from layer3/Editor.cpp:28: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 22 and 277 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Editor.cpp:1932:7: note: in expansion of macro ‘PRINTFB’ 1932 | PRINTFB(G, FB_Editor, FB_Blather) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-x86_64-3.9/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-x86_64-3.9/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Editor.cpp: In function ‘void EditorDefineExtraPks(PyMOLGlobals*)’: layer3/Editor.cpp:335:29: warning: ‘%s’ directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=] 335 | sprintf(buffer, "(byres %s)", name); | ^~ ~~~~ layer3/Editor.cpp:335:12: note: ‘sprintf’ output between 9 and 264 bytes into a destination of size 256 335 | sprintf(buffer, "(byres %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:337:31: warning: ‘%s’ directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=] 337 | sprintf(buffer, "(bychain %s)", name); | ^~ ~~~~ layer3/Editor.cpp:337:12: note: ‘sprintf’ output between 11 and 266 bytes into a destination of size 256 337 | sprintf(buffer, "(bychain %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:339:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=] 339 | sprintf(buffer, "(byobject %s)", name); | ^~ ~~~~ layer3/Editor.cpp:339:12: note: ‘sprintf’ output between 12 and 267 bytes into a destination of size 256 339 | sprintf(buffer, "(byobject %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-x86_64-3.9/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-x86_64-3.9/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-x86_64-3.9/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-x86_64-3.9/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/SpecRecSpecial.cpp -o build/temp.linux-x86_64-3.9/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Executive.cpp -o build/temp.linux-x86_64-3.9/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/PlugIOManager.cpp: In function ‘pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)’: layer3/PlugIOManager.cpp:946:65: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] 946 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from layer0/os_python.h:34, from layer3/PlugIOManager.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 58 and 313 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-x86_64-3.9/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-x86_64-3.9/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/VFont.cpp -o build/temp.linux-x86_64-3.9/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-x86_64-3.9/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/Cmd.cpp -o build/temp.linux-x86_64-3.9/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-x86_64-3.9/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-x86_64-3.9/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMesh.cpp: In member function ‘virtual void ObjectMesh::update()’: layer2/ObjectMesh.cpp:502:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] 502 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectMesh.cpp:33: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 50 and 305 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:501:9: note: in expansion of macro ‘PRINTFB’ 501 | PRINTFB(I->G, FB_ObjectMesh, FB_Errors) | ^~~~~~~ layer2/ObjectMesh.cpp:535:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] 535 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectMesh.cpp:33: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 27 and 282 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:534:13: note: in expansion of macro ‘PRINTFB’ 534 | PRINTFB(G, FB_ObjectMesh, FB_Details) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Seeker.cpp -o build/temp.linux-x86_64-3.9/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMesh.cpp: In function ‘void ObjectMeshDump(ObjectMesh*, const char*, int, int)’: layer2/ObjectMesh.cpp:329:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] 329 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectMesh.cpp:33: layer0/Feedback.h:274:15: note: ‘snprintf’ output 31 or more bytes (assuming 286) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:328:7: note: in expansion of macro ‘PRINTFB’ 328 | PRINTFB(I->G, FB_ObjectMesh, FB_Actions) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/main.cpp -o build/temp.linux-x86_64-3.9/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Character.cpp -o build/temp.linux-x86_64-3.9/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-x86_64-3.9/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-x86_64-3.9/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-x86_64-3.9/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-x86_64-3.9/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-x86_64-3.9/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-x86_64-3.9/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-x86_64-3.9/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMolecule2.cpp: In function ‘int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)’: layer2/ObjectMolecule2.cpp:335:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] 335 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMolecule2.cpp:24: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 26 and 291 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-x86_64-3.9/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-x86_64-3.9/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-x86_64-3.9/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-x86_64-3.9/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Selector.cpp -o build/temp.linux-x86_64-3.9/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule3.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)’: layer3/Executive.cpp:9007:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=] 9007 | " Remove: eliminated %d atoms in model \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 42 and 307 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9006:15: note: in expansion of macro ‘PRINTFB’ 9006 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)’: layer3/Executive.cpp:11424:28: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11424 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~ 11425 | name, nSet, obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11424:17: note: directive argument in the range [1, 2147483647] 11424 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 560 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11423:15: note: in expansion of macro ‘PRINTF’ 11423 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function ‘PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)’: layer3/Executive.cpp:11505:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11505 | " Getting: %s for %d bonds in object \"%s\".\n", | ^~ 11506 | name, nSet, obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11505:15: note: directive argument in the range [1, 2147483647] 11505 | " Getting: %s for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 38 and 556 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11504:13: note: in expansion of macro ‘PRINTF’ 11504 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)’: layer3/Executive.cpp:11605:62: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=] 11605 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 306) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11604:17: note: in expansion of macro ‘PRINTF’ 11604 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)’: layer3/Executive.cpp:11684:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11684 | " Setting: %s unset for %d bonds in object \"%s\".\n", | ^~ 11685 | name, nSet, rec->obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11684:15: note: directive argument in the range [1, 2147483647] 11684 | " Setting: %s unset for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 44 and 562 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11683:13: note: in expansion of macro ‘PRINTF’ 11683 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, pymol::CObject*, int, int, int)’: layer3/Executive.cpp:12226:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12226 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12227 | name, value2, obj->Name, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12226:19: note: directive argument in the range [1, 2147483647] 12226 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12225:17: note: in expansion of macro ‘PRINTF’ 12225 | PRINTF | ^~~~~~ layer3/Executive.cpp:12218:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12218 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12219 | name, value2, obj->Name ENDF(G); | ~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12217:17: note: in expansion of macro ‘PRINTF’ 12217 | PRINTF | ^~~~~~ layer3/Executive.cpp:12197:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~ ~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12197:11: note: in expansion of macro ‘PRINTF’ 12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)’: layer3/Executive.cpp:12129:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12129 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ 12130 | name, op.i4, rec->obj->Name ENDF(G); | ~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12128:23: note: in expansion of macro ‘PRINTF’ 12128 | PRINTF | ^~~~~~ layer3/Executive.cpp:12097:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12097 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~ 12098 | name, value2, nObj, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647] 12097 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647] In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1338 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12096:19: note: in expansion of macro ‘PRINTF’ 12096 | PRINTF | ^~~~~~ layer3/Executive.cpp:12094:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); | ^~ ~~~~ layer3/Executive.cpp:12094:21: note: directive argument in the range [1, 2147483647] 12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1320 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12093:19: note: in expansion of macro ‘PRINTF’ 12093 | PRINTF | ^~~~~~ layer3/Executive.cpp:12161:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12161 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12162 | name, value2, rec->obj->Name, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12161:25: note: directive argument in the range [1, 2147483647] 12161 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12160:23: note: in expansion of macro ‘PRINTF’ 12160 | PRINTF | ^~~~~~ layer3/Executive.cpp:12153:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12153 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12154 | name, value2, rec->obj->Name ENDF(G); | ~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12152:23: note: in expansion of macro ‘PRINTF’ 12152 | PRINTF | ^~~~~~ layer3/Executive.cpp:12057:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~ ~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12057:11: note: in expansion of macro ‘PRINTF’ 12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~~~~~ layer3/Executive.cpp: In function ‘bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)’: layer3/Executive.cpp:5951:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=] 5951 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G); | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 311 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5950:7: note: in expansion of macro ‘PRINTFB’ 5950 | PRINTFB(G, FB_Executive, FB_Details) | ^~~~~~~ layer3/Executive.cpp:5942:46: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=] 5942 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__, | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 84 and 339 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5941:7: note: in expansion of macro ‘PRINTFB’ 5941 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int, pymol::zstring_view)’: layer3/Executive.cpp:9358:53: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=] 9358 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 35 and 300 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9357:17: note: in expansion of macro ‘PRINTFB’ 9357 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp:9371:67: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=] 9371 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt, | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 314 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9370:17: note: in expansion of macro ‘PRINTFB’ 9370 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp:9383:59: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=] 9383 | " Unbond: %d bonds removed from model \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 41 and 306 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9382:17: note: in expansion of macro ‘PRINTFB’ 9382 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, pymol::zstring_view, int, int, int)’: layer3/Executive.cpp:11877:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] 11877 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11876:25: note: in expansion of macro ‘PRINTF’ 11876 | PRINTF | ^~~~~~ layer3/Executive.cpp:11877:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] 11877 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11876:25: note: in expansion of macro ‘PRINTF’ 11876 | PRINTF | ^~~~~~ layer3/Executive.cpp:11788:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11788 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~ 11789 | name, value, nObj, state + 1 ENDF(G); | ~~~~~ layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647] 11788 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647] In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1084) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11787:19: note: in expansion of macro ‘PRINTF’ 11787 | PRINTF | ^~~~~~ layer3/Executive.cpp:11785:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); | ^~ ~~~~~ layer3/Executive.cpp:11785:21: note: directive argument in the range [1, 2147483647] 11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1066) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11784:19: note: in expansion of macro ‘PRINTF’ 11784 | PRINTF | ^~~~~~ layer3/Executive.cpp:11909:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11909 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 11910 | name, value, rec->obj->Name, state + 1 ENDF(G); | ~~~~~ layer3/Executive.cpp:11909:25: note: directive argument in the range [1, 2147483647] 11909 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1330) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11908:23: note: in expansion of macro ‘PRINTF’ 11908 | PRINTF | ^~~~~~ layer3/Executive.cpp:11902:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11902 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 11903 | name, value, rec->obj->Name ENDF(G); | ~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1312) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11901:23: note: in expansion of macro ‘PRINTF’ 11901 | PRINTF | ^~~~~~ layer3/Executive.cpp:11744:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); | ^~ ~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 21 or more bytes (assuming 1044) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11744:11: note: in expansion of macro ‘PRINTF’ 11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); | ^~~~~~ layer3/Executive.cpp: In function ‘void ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)’: layer3/Executive.cpp:14447:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] 14447 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 73 and 328 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:14446:7: note: in expansion of macro ‘PRINTFB’ 14446 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp:14442:36: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] 14442 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 61 and 316 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:14441:7: note: in expansion of macro ‘PRINTFB’ 14441 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp:14473:11: warning: ‘char* strcpy(char*, const char*)’ writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 14473 | strcpy(rec->name, obj->Name); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘void ExecutiveManageSelection(PyMOLGlobals*, const char*)’: layer3/Executive.cpp:14559:11: warning: ‘char* strcpy(char*, const char*)’ writing 1 or more bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 14559 | strcpy(rec->name, name); | ~~~~~~^~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In member function ‘virtual int CExecutive::drag(int, int, int)’: layer3/Executive.cpp:15471:55: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", | ^~ 15472 | order_input, (location == -2) ? "upper" : "current"); | ~~~~~~~~~~~ layer3/Executive.cpp:15471:26: note: ‘sprintf’ output between 32 and 1057 bytes into a destination of size 1024 15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 15472 | order_input, (location == -2) ? "upper" : "current"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’: layer3/Selector.cpp:1722:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] 1722 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from layer3/Selector.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 59 and 324 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)’: layer3/Executive.cpp:12338:68: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=] 12338 | " Setting: %s unset for %d atoms in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 44 or more bytes (assuming 299) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12337:21: note: in expansion of macro ‘PRINTF’ 12337 | PRINTF | ^~~~~~ layer3/Executive.cpp:12360:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] 12360 | " Setting: %s unset in object \"%s\", state %d.\n", | ^~ layer3/Executive.cpp:12360:25: note: directive argument in the range [1, 2147483647] 12360 | " Setting: %s unset in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 41 or more bytes (assuming 305) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12359:23: note: in expansion of macro ‘PRINTF’ 12359 | PRINTF | ^~~~~~ layer3/Executive.cpp:12354:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] 12354 | " Setting: %s unset in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:282:53: note: ‘snprintf’ output 32 or more bytes (assuming 287) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12353:23: note: in expansion of macro ‘PRINTF’ 12353 | PRINTF | ^~~~~~ layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::update()’: layer2/ObjectSlice.cpp:639:42: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] 639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSlice.cpp:34: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 51 and 306 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSlice.cpp:638:9: note: in expansion of macro ‘PRINTFB’ 638 | PRINTFB(I->G, FB_ObjectSlice, FB_Errors) | ^~~~~~~ layer2/ObjectSlice.cpp:650:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] 650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSlice.cpp:34: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 28 and 283 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSlice.cpp:649:11: note: in expansion of macro ‘PRINTFB’ 649 | PRINTFB(I->G, FB_ObjectSlice, FB_Blather) | ^~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)’: layer3/Executive.cpp:9665:25: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] 9665 | " Executive: object %s created.\n", oDst->Name ENDFB(G); | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9664:3: note: in expansion of macro ‘PRINTFB’ 9664 | PRINTFB(G, FB_Executive, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)’: layer3/Executive.cpp:2259:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] 2259 | " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 36 and 546 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:2258:17: note: in expansion of macro ‘PRINTFB’ 2258 | PRINTFB(G, FB_Executive, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result > ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)’: layer3/Executive.cpp:3523:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=] 3523 | " Warning: Invalid characters in '%s' have been replaced or stripped\n", | ^~ 3524 | name ENDFB(G); | ~~~~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 67 and 322 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:3522:5: note: in expansion of macro ‘PRINTFB’ 3522 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)’: layer3/Executive.cpp:5070:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=] 5070 | " Executive: skipping unrecognized object \"%s\" of type %d.\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 321 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5069:11: note: in expansion of macro ‘PRINTFB’ 5069 | PRINTFB(G, FB_Executive, FB_Errors) | ^~~~~~~ layer3/Executive.cpp:5095:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=] 5095 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G); | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 304 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5094:9: note: in expansion of macro ‘PRINTFB’ 5094 | PRINTFB(G, FB_Executive, FB_Errors) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/Menu.cpp -o build/temp.linux-x86_64-3.9/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/PopUp.cpp -o build/temp.linux-x86_64-3.9/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-x86_64-3.9/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectSurface.cpp: In function ‘void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)’: layer2/ObjectSurface.cpp:268:30: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] 268 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSurface.cpp:35: layer0/Feedback.h:274:15: note: ‘snprintf’ output 34 or more bytes (assuming 289) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSurface.cpp:267:7: note: in expansion of macro ‘PRINTFB’ 267 | PRINTFB(I->G, FB_ObjectSurface, FB_Actions) | ^~~~~~~ layer2/ObjectSurface.cpp: In member function ‘virtual void ObjectSurface::update()’: layer2/ObjectSurface.cpp:493:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] 493 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSurface.cpp:35: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSurface.cpp:492:13: note: in expansion of macro ‘PRINTFB’ 492 | PRINTFB(I->G, FB_ObjectSurface, FB_Details) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-x86_64-3.9/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/SpecRec.cpp -o build/temp.linux-x86_64-3.9/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-x86_64-3.9/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectVolume.cpp: In function ‘ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)’: layer2/ObjectVolume.cpp:74:33: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] 74 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:35: note: ‘__builtin___snprintf_chk’ output between 46 and 301 bytes into a destination of size 255 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-x86_64-3.9/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-x86_64-3.9/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-x86_64-3.9/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-x86_64-3.9/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/generated/ShaderText.o 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build/temp.linux-x86_64-3.9/ov/src/OVOneToAny.o build/temp.linux-x86_64-3.9/ov/src/OVOneToOne.o build/temp.linux-x86_64-3.9/ov/src/OVRandom.o build/temp.linux-x86_64-3.9/ov/src/ov_utility.o -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_cmd.cpython-39-x86_64-linux-gnu.so -fopenmp building 'chempy.champ._champ' extension creating build/temp.linux-x86_64-3.9/contrib/champ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/champ.c -o build/temp.linux-x86_64-3.9/contrib/champ/champ.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-x86_64-3.9/contrib/champ/champ_module.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/chiral.c -o build/temp.linux-x86_64-3.9/contrib/champ/chiral.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/err2.c -o build/temp.linux-x86_64-3.9/contrib/champ/err2.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-x86_64-3.9/contrib/champ/feedback2.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/list.c -o build/temp.linux-x86_64-3.9/contrib/champ/list.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-x86_64-3.9/contrib/champ/os_memory.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/sort.c -o build/temp.linux-x86_64-3.9/contrib/champ/sort.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/strblock.c -o build/temp.linux-x86_64-3.9/contrib/champ/strblock.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/vla.c -o build/temp.linux-x86_64-3.9/contrib/champ/vla.o contrib/champ/os_memory.c: In function ‘OSMemoryZero’: contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 55 | while(count&&(((int)p)&mask)) { | ^ contrib/champ/os_memory.c: In function ‘OSMemoryHashAdd’: contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 137 | hash=(int)rec; | ^ contrib/champ/os_memory.c: In function ‘OSMemoryHashRemove’: contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 150 | hash=(int)rec; | ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-52qYQL/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/contrib/champ/champ.o build/temp.linux-x86_64-3.9/contrib/champ/champ_module.o build/temp.linux-x86_64-3.9/contrib/champ/chiral.o build/temp.linux-x86_64-3.9/contrib/champ/err2.o build/temp.linux-x86_64-3.9/contrib/champ/feedback2.o build/temp.linux-x86_64-3.9/contrib/champ/list.o build/temp.linux-x86_64-3.9/contrib/champ/os_memory.o build/temp.linux-x86_64-3.9/contrib/champ/sort.o build/temp.linux-x86_64-3.9/contrib/champ/strblock.o build/temp.linux-x86_64-3.9/contrib/champ/vla.o -o /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/_champ.cpython-39-x86_64-linux-gnu.so create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild dh_installdirs -i -O--buildsystem=pybuild dh_auto_install -i -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3.10 setup.py install --root /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol /build/pymol-52qYQL/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running install running build running build_py running build_ext running install_lib creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10 creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/arc.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bond_amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bond_mmff.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bonds.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/brick.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/cc1.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/charge.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/cif.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/cpv.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/dictdb.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/gamess1.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/gms.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/hetatm.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/io.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/lst.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mae.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/map.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mass.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mmd.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/models.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mol.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mol2.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/neighbor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/pdb.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/pkl.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/place.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/protein.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/protein_amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/protein_amber99.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/protein_mmff.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/protein_residues.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/sdf.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/solvate.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/water_amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/water_residues.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/xyz.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin/commands.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin/realtime.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin/state.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/bmin/util.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ/amber99.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ/assign.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ/formal_charges.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/champ/_champ.cpython-310-x86_64-linux-gnu.so -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/fast copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/fast/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/fast creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/fragments copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/fragments/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/fragments creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mmtf copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mmtf/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mmtf copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/mmtf/io.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mmtf creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker/amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker/keyword.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker/realtime.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/chempy/tinker/state.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/TextEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/builder.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/file_dialogs.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/keymapping.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/mimic_tk.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/properties_dialog.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/shortcut_menu_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/volume.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/askpartial.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/change_confirm.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/colors.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/create_shortcut.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/fetch.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/help_shortcut.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/load_aln.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/load_mae.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/load_map.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/load_traj.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/movieexport.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/pluginmanager.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/png.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/props.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/render.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/save_molecule.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/save_object.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/forms/shortcut_menu.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax/pml.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_qt/syntax/python.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/ColorEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/Demo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/PMGApp.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/SetEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/Setting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/TextEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/volume.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/demo copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/demo creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/normal copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/normal copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/normal copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/skins/normal/builder.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/normal creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/startup copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pmg_tk/startup/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/startup creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/__main__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/api.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/callback.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/cgo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/checking.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/cmd.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/colorprinting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/colorramping.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/commanding.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/completing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/computing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/constants.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/constants_palette.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/controlling.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/creating.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/diagnosing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/editing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/editor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/experimenting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/exporting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/externing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/feedingback.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/fitting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/headering.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/helping.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/importing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/internal.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/invocation.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/keyboard.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/keywords.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/lazyio.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/locking.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/menu.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/monitoring.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/morphing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/movie.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/moving.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/mpeg_encode.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/parser.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/parsing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/preset.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/pymolhttpd.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/querying.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/rpc.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/save_shortcut.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/selecting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/selector.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/seqalign.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/setting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/shortcut.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/shortcut_dict.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/shortcut_manager.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/util.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/vfont.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/viewing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizarding.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/xray.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/xwin.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/povray.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/Qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/Qt/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/Qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/Qt/utils.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/Qt creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins/installation.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins/legacysupport.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins/managergui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins/managergui_qt.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/plugins/repository.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/stereochemistry copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/stereochemistry/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/stereochemistry creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/annotation.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/appearance.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/benchmark.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/box.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/charge.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/cleanup.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/command.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/demo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/density.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/distance.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/dragging.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/filter.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/label.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/measurement.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/message.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/mutagenesis.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/nucmutagenesis.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/openvr.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/pair_fit.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/pseudoatom.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/renaming.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/sculpting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/security.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/stereodemo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/wizard/toggle.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol/_cmd.cpython-310-x86_64-linux-gnu.so -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol2 copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol2/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol2 copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.10_pymol/build/pymol2/cmd2.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol2 byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/arc.py to arc.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bond_amber.py to bond_amber.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bonds.py to bonds.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/brick.py to brick.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/cc1.py to cc1.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/charge.py to charge.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/cif.py to cif.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/cpv.py to cpv.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/dictdb.py to dictdb.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/gamess1.py to gamess1.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/gms.py to gms.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/hetatm.py to hetatm.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/io.py to io.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/lst.py to lst.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mae.py to mae.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/map.py to map.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mass.py to mass.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mmd.py to mmd.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/models.py to models.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mol.py to mol.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mol2.py to mol2.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/neighbor.py to neighbor.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/pdb.py to pdb.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/pkl.py to pkl.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/place.py to place.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/protein.py to protein.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/protein_amber.py to protein_amber.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/protein_residues.py to protein_residues.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/sdf.py to sdf.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/solvate.py to solvate.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/water_amber.py to water_amber.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/water_residues.py to water_residues.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/xyz.py to xyz.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin/commands.py to commands.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin/realtime.py to realtime.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin/state.py to state.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/bmin/util.py to util.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ/amber99.py to amber99.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ/assign.py to assign.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/champ/formal_charges.py to formal_charges.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/fast/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/fragments/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mmtf/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/mmtf/io.py to io.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker/amber.py to amber.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker/keyword.py to keyword.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker/realtime.py to realtime.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/chempy/tinker/state.py to state.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/TextEditor.py to TextEditor.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/builder.py to builder.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/volume.py to volume.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_qt/syntax/python.py to python.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/Demo.py to Demo.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/PMGApp.py to PMGApp.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/SetEditor.py to SetEditor.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/Setting.py to Setting.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/TextEditor.py to TextEditor.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/volume.py to volume.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/skins/normal/builder.py to builder.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pmg_tk/startup/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/__main__.py to __main__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/_gui.py to _gui.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/api.py to api.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/callback.py to callback.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/cgo.py to cgo.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/checking.py to checking.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/cmd.py to cmd.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/colorprinting.py to colorprinting.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/colorramping.py to colorramping.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/commanding.py to commanding.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/completing.py to completing.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/computing.py to computing.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/constants.py to constants.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/constants_palette.py to constants_palette.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/controlling.py to controlling.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/creating.py to creating.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/diagnosing.py to diagnosing.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/editing.py to editing.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/editor.py to editor.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/experimenting.py to experimenting.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/exporting.py to exporting.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/externing.py to externing.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/feedingback.py to feedingback.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/fitting.py to fitting.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/gui.py to gui.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/headering.py to headering.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/helping.py to helping.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/importing.py to importing.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/internal.py to internal.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/invocation.py to invocation.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/keyboard.py to keyboard.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/keywords.py to keywords.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/lazyio.py to lazyio.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/locking.py to locking.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/menu.py to menu.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/monitoring.py to monitoring.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/morphing.py to morphing.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/movie.py to movie.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/moving.py to moving.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/parser.py to parser.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/parsing.py to parsing.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/preset.py to preset.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/querying.py to querying.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/rpc.py to rpc.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/save_shortcut.py to save_shortcut.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/selecting.py to selecting.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/selector.py to selector.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/seqalign.py to seqalign.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/setting.py to setting.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/shortcut.py to shortcut.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/util.py to util.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/vfont.py to vfont.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/viewing.py to viewing.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizarding.py to wizarding.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/xray.py to xray.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/xwin.py to xwin.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/povray.py to povray.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/Qt/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/Qt/utils.py to utils.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins/installation.py to installation.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins/managergui.py to managergui.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/plugins/repository.py to repository.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/annotation.py to annotation.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/appearance.py to appearance.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/benchmark.py to benchmark.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/box.py to box.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/charge.py to charge.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/cleanup.py to cleanup.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/command.py to command.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/demo.py to demo.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/density.py to density.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/distance.py to distance.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/dragging.py to dragging.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/filter.py to filter.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/label.py to label.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/measurement.py to measurement.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/message.py to message.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/openvr.py to openvr.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/renaming.py to renaming.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/sculpting.py to sculpting.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/security.py to security.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol/wizard/toggle.py to toggle.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol2/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol2/cmd2.py to cmd2.cpython-310.pyc running install_egg_info Writing /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.10/dist-packages/pymol-2.5.0.egg-info creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/bin I: pybuild base:237: /usr/bin/python3 setup.py install --root /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol running install running build running build_py running build_ext running install_lib creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9 creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/arc.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bond_amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bond_mmff.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bonds.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/brick.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cc1.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/charge.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cif.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cpv.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/dictdb.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/gamess1.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/gms.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/hetatm.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/io.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/lst.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mae.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/map.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mass.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmd.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/models.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mol.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mol2.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/neighbor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/pdb.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/pkl.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/place.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_amber99.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_mmff.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_residues.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/sdf.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/solvate.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/water_amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/water_residues.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/xyz.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/commands.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/realtime.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/state.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/util.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/amber99.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/assign.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/formal_charges.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/_champ.cpython-39-x86_64-linux-gnu.so -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf/io.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/amber.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/keyword.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/realtime.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/state.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/TextEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/builder.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/file_dialogs.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/keymapping.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/mimic_tk.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/properties_dialog.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/shortcut_menu_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/volume.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/askpartial.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/change_confirm.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/colors.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/create_shortcut.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/fetch.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/help_shortcut.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_aln.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_mae.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_map.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_traj.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/movieexport.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/pluginmanager.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/png.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/props.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/render.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/save_molecule.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/save_object.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/shortcut_menu.ui -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/pml.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/python.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/ColorEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/Demo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/PMGApp.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/SetEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/Setting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/TextEditor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/volume.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/builder.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/__main__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/api.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/callback.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/cgo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/checking.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/cmd.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/colorprinting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/colorramping.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/commanding.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/completing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/computing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/constants.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/constants_palette.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/controlling.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/creating.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/diagnosing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/editing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/editor.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/experimenting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/exporting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/externing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/feedingback.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/fitting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/gui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/headering.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/helping.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/importing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/internal.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/invocation.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/keyboard.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/keywords.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/lazyio.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/locking.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/menu.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/monitoring.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/morphing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/movie.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/moving.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/mpeg_encode.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/parser.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/parsing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/preset.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/pymolhttpd.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/querying.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/rpc.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/save_shortcut.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/selecting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/selector.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/seqalign.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/setting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/shortcut.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/shortcut_dict.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/shortcut_manager.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/util.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/vfont.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/viewing.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizarding.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/xray.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/xwin.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/povray.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt/utils.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/installation.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/legacysupport.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/managergui.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/managergui_qt.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/repository.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/annotation.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/appearance.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/benchmark.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/box.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/charge.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/cleanup.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/command.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/demo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/density.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/distance.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/dragging.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/filter.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/label.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/measurement.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/message.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/mutagenesis.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/nucmutagenesis.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/openvr.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/pair_fit.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/pseudoatom.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/renaming.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/sculpting.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/security.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/stereodemo.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/toggle.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_cmd.cpython-39-x86_64-linux-gnu.so -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol creating /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2 copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2/__init__.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2 copying /build/pymol-52qYQL/pymol-2.5.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2/cmd2.py -> /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2 byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/arc.py to arc.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bond_amber.py to bond_amber.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bonds.py to bonds.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/brick.py to brick.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cc1.py to cc1.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/charge.py to charge.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cif.py to cif.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cpv.py to cpv.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/dictdb.py to dictdb.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/gamess1.py to gamess1.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/gms.py to gms.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/hetatm.py to hetatm.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/io.py to io.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/lst.py to lst.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mae.py to mae.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/map.py to map.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mass.py to mass.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmd.py to mmd.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/models.py to models.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mol.py to mol.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mol2.py to mol2.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/neighbor.py to neighbor.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/pdb.py to pdb.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/pkl.py to pkl.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/place.py to place.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein.py to protein.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_amber.py to protein_amber.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_residues.py to protein_residues.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/sdf.py to sdf.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/solvate.py to solvate.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/water_amber.py to water_amber.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/water_residues.py to water_residues.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/xyz.py to xyz.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/commands.py to commands.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/realtime.py to realtime.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/state.py to state.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/util.py to util.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/amber99.py to amber99.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/assign.py to assign.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/formal_charges.py to formal_charges.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf/io.py to io.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/amber.py to amber.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/keyword.py to keyword.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/realtime.py to realtime.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/state.py to state.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/TextEditor.py to TextEditor.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/builder.py to builder.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/volume.py to volume.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/python.py to python.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/Demo.py to Demo.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/PMGApp.py to PMGApp.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/SetEditor.py to SetEditor.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/Setting.py to Setting.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/TextEditor.py to TextEditor.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/volume.py to volume.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/builder.py to builder.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/__main__.py to __main__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/_gui.py to _gui.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/api.py to api.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/callback.py to callback.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/cgo.py to cgo.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/checking.py to checking.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/cmd.py to cmd.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/colorprinting.py to colorprinting.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/colorramping.py to colorramping.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/commanding.py to commanding.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/completing.py to completing.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/computing.py to computing.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/constants.py to constants.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/constants_palette.py to constants_palette.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/controlling.py to controlling.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/creating.py to creating.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/diagnosing.py to diagnosing.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/editing.py to editing.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/editor.py to editor.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/experimenting.py to experimenting.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/exporting.py to exporting.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/externing.py to externing.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/feedingback.py to feedingback.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/fitting.py to fitting.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/gui.py to gui.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/headering.py to headering.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/helping.py to helping.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/importing.py to importing.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/internal.py to internal.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/invocation.py to invocation.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/keyboard.py to keyboard.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/keywords.py to keywords.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/lazyio.py to lazyio.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/locking.py to locking.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/menu.py to menu.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/monitoring.py to monitoring.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/morphing.py to morphing.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/movie.py to movie.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/moving.py to moving.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/parser.py to parser.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/parsing.py to parsing.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/preset.py to preset.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/querying.py to querying.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/rpc.py to rpc.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/save_shortcut.py to save_shortcut.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/selecting.py to selecting.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/selector.py to selector.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/seqalign.py to seqalign.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/setting.py to setting.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/shortcut.py to shortcut.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/util.py to util.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/vfont.py to vfont.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/viewing.py to viewing.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizarding.py to wizarding.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/xray.py to xray.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/xwin.py to xwin.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/povray.py to povray.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt/utils.py to utils.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/installation.py to installation.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/managergui.py to managergui.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/repository.py to repository.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/annotation.py to annotation.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/appearance.py to appearance.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/benchmark.py to benchmark.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/box.py to box.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/charge.py to charge.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/cleanup.py to cleanup.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/command.py to command.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/demo.py to demo.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/density.py to density.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/distance.py to distance.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/dragging.py to dragging.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/filter.py to filter.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/label.py to label.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/measurement.py to measurement.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/message.py to message.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/openvr.py to openvr.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/renaming.py to renaming.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/sculpting.py to sculpting.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/security.py to security.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/toggle.py to toggle.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2/cmd2.py to cmd2.cpython-39.pyc running install_egg_info Writing /build/pymol-52qYQL/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol-2.5.0.egg-info debian/rules override_dh_install-indep make[1]: Entering directory '/build/pymol-52qYQL/pymol-2.5.0+dfsg' pdflatex -output-directory debian -jobname pymol-ref-card debian/pymolRef.tex This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./debian/pymolRef.tex LaTeX2e <2021-11-15> L3 programming layer <2021-11-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file pymol-ref-card.aux. Underfull \hbox (badness 10000) in paragraph at lines 78--79 [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (debian/pymol-ref-card.aux) kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm0900 mkdir: cannot create directory ‘././nonexistent’: Permission denied mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm0900 This is METAFONT, Version 2.71828182 (TeX Live 2022/dev/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm0900.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf Ok [100] [109] [98] [99] [108]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] [45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf Ok [185] [178] [179] [170] [186]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf Ok [188] [189] [190]) ) ) ) (some charht values had to be adjusted by as much as 0.06744pt) Font metrics written on tcrm0900.tfm. Output written on tcrm0900.600gf (128 characters, 21392 bytes). Transcript written on tcrm0900.log. mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/tcrm0900.600pk: successfully generated. ) (see the transcript file for additional information) Output written on debian/pymol-ref-card.pdf (2 pages, 108238 bytes). Transcript written on debian/pymol-ref-card.log. dh_install install -m 755 debian/pymol.launch debian/pymol/usr/bin/pymol make[1]: Leaving directory '/build/pymol-52qYQL/pymol-2.5.0+dfsg' dh_installdocs -i -O--buildsystem=pybuild dh_installchangelogs -i -O--buildsystem=pybuild dh_installexamples -i -O--buildsystem=pybuild dh_installman -i -O--buildsystem=pybuild dh_python3 -i -O--buildsystem=pybuild dh_installsystemduser -i -O--buildsystem=pybuild dh_installmime -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/pymol-52qYQL/pymol-2.5.0+dfsg' dh_compress -Xpdb make[1]: Leaving directory '/build/pymol-52qYQL/pymol-2.5.0+dfsg' dh_fixperms -i -O--buildsystem=pybuild dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package pymol: substitution variable ${python3:Depends} used, but is not defined dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'pymol' in '../pymol_2.5.0+dfsg-1_all.deb'. dpkg-deb: building package 'pymol-data' in '../pymol-data_2.5.0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=all -O../pymol_2.5.0+dfsg-1_all.buildinfo dpkg-genchanges --build=all -O../pymol_2.5.0+dfsg-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/pymol-52qYQL /tmp/pymol-2.5.0+dfsg-1s7s8oqn4 I: cleaning package lists and apt cache... W: deleting files in /tmp: texfonts I: removing tempdir /tmp/mmdebstrap.TBgStmCrEt... I: success in 834.8558 seconds md5: pymol-data_2.5.0+dfsg-1_all.deb: OK md5: pymol_2.5.0+dfsg-1_all.deb: OK sha1: pymol-data_2.5.0+dfsg-1_all.deb: OK sha1: pymol_2.5.0+dfsg-1_all.deb: OK sha256: pymol-data_2.5.0+dfsg-1_all.deb: OK sha256: pymol_2.5.0+dfsg-1_all.deb: OK Checksums: OK