Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/pymol/pymol_2.4.0+dfsg-2_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/pymol-2.4.0+dfsg-24jwuynts/pymol_2.4.0+dfsg-2_all.buildinfo Get source package info: pymol=2.4.0+dfsg-2 Source URL: http://snapshot.notset.fr/mr/package/pymol/2.4.0+dfsg-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11.1 base-passwd=3.5.50 bash=5.1-3 binutils=2.35.2-2 binutils-common=2.35.2-2 binutils-x86-64-linux-gnu=2.35.2-2 bsdextrautils=2.36.1-7 bsdutils=1:2.36.1-7 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.76 debhelper=13.3.4 debianutils=4.11.2 dh-autoreconf=20 dh-python=4.20201102+nmu1 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-lmodern=2.004.5-6.1 freeglut3=2.8.1-6 freeglut3-dev=2.8.1-6 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-4 hdf5-helpers=1.10.6+repack-2 hostname=3.23 icu-devtools=67.1-6 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libaec-dev=1.0.4-2 libaec0=1.0.4-2 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libbinutils=2.35.2-2 libblas3=3.9.0-3 libblkid1=2.36.1-7 libbrotli-dev=1.0.9-2+b2 libbrotli1=1.0.9-2+b2 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-12 libc-dev-bin=2.31-12 libc6=2.31-12 libc6-dev=2.31-12 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcom-err2=1.46.2-1 libcrypt-dev=1:4.4.18-4 libcrypt1=1:4.4.18-4 libctf-nobfd0=2.35.2-2 libctf0=2.35.2-2 libcups2=2.3.3op2-3 libcurl3-gnutls=7.74.0-1.2 libcurl4-gnutls-dev=7.74.0-1.2 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.12.20-2 libdebconfclient0=0.257 libdebhelper-perl=13.3.4 libdouble-conversion3=3.1.5-6.1 libdpkg-perl=1.20.9 libdrm-amdgpu1=2.4.104-1 libdrm-common=2.4.104-1 libdrm-intel1=2.4.104-1 libdrm-nouveau2=2.4.104-1 libdrm-radeon1=2.4.104-1 libdrm2=2.4.104-1 libedit2=3.1-20191231-2+b1 libegl-dev=1.3.2-1 libegl-mesa0=20.3.5-1 libegl1=1.3.2-1 libelf1=0.183-3 libevdev2=1.11.0+dfsg-1 libexpat1=2.2.10-2 libexpat1-dev=2.2.10-2 libffi7=3.3-6 libfile-stripnondeterminism-perl=1.12.0-1 libfontconfig1=2.13.1-4.2 libfreetype-dev=2.10.4+dfsg-1 libfreetype6=2.10.4+dfsg-1 libfreetype6-dev=2.10.4+dfsg-1 libgbm1=20.3.5-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-5 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgfortran5=10.2.1-6 libgl-dev=1.3.2-1 libgl1=1.3.2-1 libgl1-mesa-dev=20.3.5-1 libgl1-mesa-dri=20.3.5-1 libglapi-mesa=20.3.5-1 libgles-dev=1.3.2-1 libgles1=1.3.2-1 libgles2=1.3.2-1 libglew-dev=2.1.0-4+b1 libglew2.1=2.1.0-4+b1 libglib2.0-0=2.66.8-1 libglm-dev=0.9.9.8+ds-1 libglu1-mesa=9.0.1-1 libglu1-mesa-dev=9.0.1-1 libglvnd-dev=1.3.2-1 libglvnd0=1.3.2-1 libglx-dev=1.3.2-1 libglx-mesa0=20.3.5-1 libglx0=1.3.2-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.1-4 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-5 libgudev-1.0-0=234-1 libharfbuzz0b=2.7.4-1 libhdf5-103-1=1.10.6+repack-2 libhdf5-cpp-103-1=1.10.6+repack-2 libhdf5-dev=1.10.6+repack-2 libhdf5-fortran-102=1.10.6+repack-2 libhdf5-hl-100=1.10.6+repack-2 libhdf5-hl-cpp-100=1.10.6+repack-2 libhdf5-hl-fortran-100=1.10.6+repack-2 libhogweed6=3.7.2-3 libice-dev=2:1.0.10-1 libice6=2:1.0.10-1 libicu-dev=67.1-6 libicu67=67.1-6 libidn2-0=2.3.0-5 libinput-bin=1.16.4-3 libinput10=1.16.4-3 libisl23=0.23-1 libitm1=10.2.1-6 libjpeg-dev=1:2.0.6-4 libjpeg62-turbo=1:2.0.6-4 libjpeg62-turbo-dev=1:2.0.6-4 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-sphinxdoc=3.4.3-2 libjs-underscore=1.9.1~dfsg-3 libk5crypto3=1.18.3-5 libkeyutils1=1.6.1-2 libkpathsea6=2020.20200327.54578-7 libkrb5-3=1.18.3-5 libkrb5support0=1.18.3-5 liblapack3=3.9.0-3 libldap-2.4-2=2.4.57+dfsg-3 libllvm11=1:11.0.1-2 liblsan0=10.2.1-6 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.3-3 libmd4c0=0.4.7-2 libmount1=2.36.1-7 libmpc3=1.2.0-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libmtdev1=1.1.6-1 libncursesw6=6.2+20201114-2 libnetcdf-dev=1:4.7.4-1 libnetcdf18=1:4.7.4-1 libnettle8=3.7.2-3 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libopengl-dev=1.3.2-1 libopengl0=1.3.2-1 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-7 libpam-modules-bin=1.4.0-7 libpam-runtime=1.4.0-7 libpam0g=1.4.0-7 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpciaccess0=0.16-1 libpcre2-16-0=10.36-2 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-4 libpipeline1=1.5.3-1 libpixman-1-0=0.40.0-1 libpng-dev=1.6.37-3 libpng16-16=1.6.37-3 libpsl5=0.21.0-1.2 libptexenc1=2020.20200327.54578-7 libpthread-stubs0-dev=0.4-1 libpython3-all-dev=3.9.2-3 libpython3-dev=3.9.2-3 libpython3-stdlib=3.9.2-3 libpython3.9=3.9.2-1 libpython3.9-dev=3.9.2-1 libpython3.9-minimal=3.9.2-1 libpython3.9-stdlib=3.9.2-1 libqt5core5a=5.15.2+dfsg-5 libqt5dbus5=5.15.2+dfsg-5 libqt5designer5=5.15.2-5 libqt5gui5=5.15.2+dfsg-5 libqt5help5=5.15.2-5 libqt5network5=5.15.2+dfsg-5 libqt5opengl5=5.15.2+dfsg-5 libqt5printsupport5=5.15.2+dfsg-5 libqt5sql5=5.15.2+dfsg-5 libqt5test5=5.15.2+dfsg-5 libqt5widgets5=5.15.2+dfsg-5 libqt5xml5=5.15.2+dfsg-5 libquadmath0=10.2.1-6 libreadline8=8.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libseccomp2=2.5.1-1 libselinux1=3.1-3 libsensors-config=1:3.6.0-7 libsensors5=1:3.6.0-7 libsigsegv2=2.13-1 libsm-dev=2:1.2.3-1 libsm6=2:1.2.3-1 libsmartcols1=2.36.1-7 libsqlite3-0=3.34.1-3 libssh2-1=1.9.0-3 libssl1.1=1.1.1k-1 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsynctex2=2020.20200327.54578-7 libsystemd0=247.3-5 libsz2=1.0.4-2 libtasn1-6=4.16.0-2 libteckit0=2.5.10+ds1-3 libtexlua53=2020.20200327.54578-7 libtexluajit2=2020.20200327.54578-7 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.3-5 libunistring2=0.9.10-4 libuuid1=2.36.1-7 libvulkan1=1.2.162.0-1 libwacom-common=1.8-2 libwacom2=1.8-2 libwayland-client0=1.19.0-2 libwayland-server0=1.19.0-2 libx11-6=2:1.7.1-1 libx11-data=2:1.7.1-1 libx11-dev=2:1.7.1-1 libx11-xcb1=2:1.7.1-1 libxau-dev=1:1.0.9-1 libxau6=1:1.0.9-1 libxaw7=2:1.0.13-1.1 libxcb-dri2-0=1.14-3 libxcb-dri3-0=1.14-3 libxcb-glx0=1.14-3 libxcb-icccm4=0.4.1-1.1 libxcb-image0=0.4.0-1+b3 libxcb-keysyms1=0.4.0-1+b2 libxcb-present0=1.14-3 libxcb-randr0=1.14-3 libxcb-render-util0=0.3.9-1+b1 libxcb-render0=1.14-3 libxcb-shape0=1.14-3 libxcb-shm0=1.14-3 libxcb-sync1=1.14-3 libxcb-util1=0.4.0-1+b1 libxcb-xfixes0=1.14-3 libxcb-xinerama0=1.14-3 libxcb-xinput0=1.14-3 libxcb-xkb1=1.14-3 libxcb1=1.14-3 libxcb1-dev=1.14-3 libxdamage1=1:1.1.5-2 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxext-dev=2:1.3.3-1.1 libxext6=2:1.3.3-1.1 libxfixes3=1:5.0.3-2 libxi6=2:1.7.10-1 libxkbcommon-x11-0=1.0.3-2 libxkbcommon0=1.0.3-2 libxml2=2.9.10+dfsg-6.7 libxml2-dev=2.9.10+dfsg-6.7 libxmu6=2:1.1.2-2+b3 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxt-dev=1:1.2.0-1 libxt6=1:1.2.0-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.10-1 libzstd1=1.4.8+dfsg-2.1 libzzip-0-13=0.13.62-3.3 linux-libc-dev=5.10.28-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 patch=2.7.6-7 perl=5.32.1-4 perl-base=5.32.1-4 perl-modules-5.32=5.32.1-4 po-debconf=1.0.21+nmu1 python3=3.9.2-3 python3-all=3.9.2-3 python3-all-dev=3.9.2-3 python3-dev=3.9.2-3 python3-distutils=3.9.2-1 python3-lib2to3=3.9.2-1 python3-minimal=3.9.2-3 python3-numpy=1:1.19.5-1 python3-opengl=3.1.5+dfsg-1 python3-pkg-resources=52.0.0-3 python3-pyqt5=5.15.2+dfsg-3 python3-pyqt5.qtopengl=5.15.2+dfsg-3 python3-pyqt5.sip=12.8.1-1+b2 python3.9=3.9.2-1 python3.9-dev=3.9.2-1 python3.9-minimal=3.9.2-1 readline-common=8.1-2 sed=4.7-1 sensible-utils=0.0.14 shared-mime-info=2.0-1 sysvinit-utils=2.96-7 t1utils=1.41-4 tar=1.34+dfsg-1 tex-common=6.16 texlive-base=2020.20210202-3 texlive-binaries=2020.20200327.54578-7 texlive-latex-base=2020.20210202-3 tzdata=2021a-1 ucf=3.0043 util-linux=2.36.1-7 x11-common=1:7.7+22 x11proto-dev=2020.1-1 x11proto-xext-dev=2020.1-1 xdg-utils=1.1.3-4.1 xkb-data=2.29-2 xorg-sgml-doctools=1:1.11-1.1 xtrans-dev=1.4.0-1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210901T090918Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210520T031924Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d pymol=2.4.0+dfsg-2 && mkdir -p /build/pymol-ZnPFSl && dpkg-source --no-check -x /*.dsc /build/pymol-ZnPFSl/pymol-2.4.0+dfsg && chown -R builduser:builduser /build/pymol-ZnPFSl" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pymol-ZnPFSl/pymol-2.4.0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1621682787" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/pymol-ZnPFSl /tmp/pymol-2.4.0+dfsg-24jwuynts bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210520T031924Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.T6JIbh2B9I as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.T6JIbh2B9I Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-7). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210520T031924Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210520T031924Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1129 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4667 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-12) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210901T090918Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210520T031924Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.T6JIbh2B9I Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210901T090918Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210520T031924Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210901T090918Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210901T090918Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210901T090918Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210901T090918Z unstable/main amd64 Packages [11.9 MB] Fetched 34.6 MB in 31s (1101 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.T6JIbh2B9I I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d pymol=2.4.0+dfsg-2 && mkdir -p /build/pymol-ZnPFSl && dpkg-source --no-check -x /*.dsc /build/pymol-ZnPFSl/pymol-2.4.0+dfsg && chown -R builduser:builduser /build/pymol-ZnPFSl"' exec /tmp/mmdebstrap.T6JIbh2B9I Reading package lists... NOTICE: 'pymol' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/pymol.git Please use: git clone https://salsa.debian.org/debichem-team/pymol.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 7004 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main pymol 2.4.0+dfsg-2 (dsc) [2270 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main pymol 2.4.0+dfsg-2 (tar) [6945 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main pymol 2.4.0+dfsg-2 (diff) [56.7 kB] Fetched 7004 kB in 6s (1084 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'pymol_2.4.0+dfsg-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting pymol in /build/pymol-ZnPFSl/pymol-2.4.0+dfsg dpkg-source: info: unpacking pymol_2.4.0+dfsg.orig.tar.xz dpkg-source: info: unpacking pymol_2.4.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 02_test-suite.patch dpkg-source: info: applying 03_povray.patch dpkg-source: info: applying 22_fix_pymol_import.patch dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch dpkg-source: info: applying 28_no_data_install_in_python_path.patch dpkg-source: info: applying 31_fix_format-security.patch dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch dpkg-source: info: applying 40_mstop_movies.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pymol-ZnPFSl/pymol-2.4.0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1621682787" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.T6JIbh2B9I dpkg-buildpackage: info: source package pymol dpkg-buildpackage: info: source version 2.4.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael Banck dpkg-source --before-build . fakeroot debian/rules clean dh clean --with python3 --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/pymol-ZnPFSl/pymol-2.4.0+dfsg' rm -f -r build test/tmp test/cmp generated dh_clean debian/pymol.launch debian/pymol-ref-card.* \ Rules.make create_shadertext.pyc make[1]: Leaving directory '/build/pymol-ZnPFSl/pymol-2.4.0+dfsg' debian/rules build-indep dh build-indep --with python3 --buildsystem pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -i -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2 copying modules/pymol2/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2 copying modules/pymol2/cmd2.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2 creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/parsing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/creating.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/moving.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/fitting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/invocation.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/_gui.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/controlling.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/parser.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/experimenting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/xwin.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/checking.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/cmd.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/shortcut.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/pymolhttpd.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/internal.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/morphing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/cgo.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/preset.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/editing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/gui.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/util.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/colorprinting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/helping.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/menu.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/xray.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/keyboard.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/api.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/__main__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/colorramping.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/feedingback.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/completing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/selector.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/commanding.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/constants.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/headering.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/selecting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/lazyio.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/importing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/externing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/seqalign.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/diagnosing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/computing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/editor.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/keywords.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/locking.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/exporting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/callback.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/setting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/wizarding.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/rpc.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/vfont.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/monitoring.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/constants_palette.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/movie.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/querying.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/povray.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol copying modules/pymol/viewing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins copying modules/pymol/plugins/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins copying modules/pymol/plugins/installation.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui_qt.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins copying modules/pymol/plugins/repository.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/benchmark.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/security.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/appearance.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/command.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/filter.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/annotation.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/demo.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/fedora.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/sculpting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/density.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/label.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/measurement.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/dragging.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/box.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/charge.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/openvr.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/cleanup.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/renaming.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/message.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/toggle.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard copying modules/pymol/wizard/distance.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/contrib copying modules/pymol/contrib/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/contrib creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry copying modules/pymol/stereochemistry/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt copying modules/pymol/Qt/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt copying modules/pymol/Qt/utils.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl copying modules/pymol/opengl/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glut creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/gl creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glu creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/hetatm.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/sdf.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/protein_amber.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/pkl.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/mass.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/bond_mmff.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/mol2.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/mae.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/pdb.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/water_residues.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/gamess1.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/place.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/cc1.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/bond_amber.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/mol.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/cpv.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/models.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/solvate.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/io.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/gms.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/brick.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/map.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/protein_mmff.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/protein.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/arc.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/water_amber.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/mmd.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/charge.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/lst.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/protein_residues.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/protein_amber99.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/xyz.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/cif.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/neighbor.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/bonds.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy copying modules/chempy/dictdb.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker copying modules/chempy/tinker/amber.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker copying modules/chempy/tinker/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker copying modules/chempy/tinker/state.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker copying modules/chempy/tinker/keyword.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker copying modules/chempy/tinker/realtime.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast copying modules/chempy/fast/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments copying modules/chempy/fragments/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ copying modules/chempy/champ/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ copying modules/chempy/champ/formal_charges.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ copying modules/chempy/champ/amber99.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ copying modules/chempy/champ/assign.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin copying modules/chempy/bmin/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin copying modules/chempy/bmin/state.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin copying modules/chempy/bmin/util.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin copying modules/chempy/bmin/commands.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin copying modules/chempy/bmin/realtime.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf copying modules/chempy/mmtf/io.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/ColorEditor.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/PMGApp.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/volume.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/TextEditor.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/Demo.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/Setting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk copying modules/pmg_tk/SetEditor.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins copying modules/pmg_tk/skins/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/pymol_gl_widget.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/mimic_pmg_tk.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/mimic_tk.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/file_dialogs.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/builder.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/properties_dialog.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/volume.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/TextEditor.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/keymapping.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/python.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mtz.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_map.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_aln.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/colors.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_object.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/askpartial.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/render.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/props.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/movieexport.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginitem.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/fetch.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/build creating build/temp.linux-x86_64-3.9/build/generated creating build/temp.linux-x86_64-3.9/contrib creating build/temp.linux-x86_64-3.9/contrib/uiuc creating build/temp.linux-x86_64-3.9/contrib/uiuc/plugins creating build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.linux-x86_64-3.9/layer0 creating build/temp.linux-x86_64-3.9/layer1 creating build/temp.linux-x86_64-3.9/layer2 creating build/temp.linux-x86_64-3.9/layer3 creating build/temp.linux-x86_64-3.9/layer4 creating build/temp.linux-x86_64-3.9/layer5 creating build/temp.linux-x86_64-3.9/modules creating build/temp.linux-x86_64-3.9/modules/cealign creating build/temp.linux-x86_64-3.9/modules/cealign/src creating build/temp.linux-x86_64-3.9/ov creating build/temp.linux-x86_64-3.9/ov/src x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-x86_64-3.9/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS); | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 273 | if(ok) { | ^~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS); | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 413 | return ok; | ^~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 545 | for (i=0; ifd) != 3*n) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 275 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 289 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 127 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 138 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 74 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 82 | fgets(line, LINESIZE, fd); // Read the molecule info | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fgets(line, LINESIZE, fd); // Read the charge_type | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread(brick, sizeof(char), 512, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function] 133 | static int get_pte_idx(const char *label) | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fscanf(fd, "%3s", keyWord); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’: contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable] 48 | double timesteprst; | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function ‘write_psf_structure’: contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 782 | if (strlen(atoms[i].type) > fw) { | ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 123 | fscanf(fd, " %s %f", keyWord, &prod); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 128 | fscanf(fd, " %s %f", keyWord, &plus); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 135 | fscanf(fd, " %s %f", keyWord, &sigma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30: At top level: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: ‘fortread_4’ defined but not used [-Wunused-function] 103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) { | ^~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘fort_get_endian_reclen’ defined but not used [-Wunused-function] 55 | static int fort_get_endian_reclen(int reclen, int word0, int word1, | ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘fort_eat_recmark’ defined but not used [-Wunused-function] 36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) { | ^~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28, from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘swap8_aligned’ defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 304 | fgets(symData, 81, fd); | ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] 360 | strncpy(tmptype, atom->type, sizeof(atom->type)); | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:41: In function ‘strncpy’, inlined from ‘read_tinker_structure’ at contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89: At top level: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function] 459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { | ^~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 435 | fscanf(file, " " DBLFMT, &prm->Charges[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 444 | fscanf(file, " " DBLFMT, &prm->Masses[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 510 | fscanf(file, " " DBLFMT, &prm->Rk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(file, " " DBLFMT, &prm->Req[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 524 | fscanf(file, " " DBLFMT, &prm->Tk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 531 | fscanf(file, " " DBLFMT, &prm->Teq[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 538 | fscanf(file, " " DBLFMT, &prm->Pk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 545 | fscanf(file, " " DBLFMT, &prm->Pn[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 552 | fscanf(file, " " DBLFMT, &prm->Phase[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 559 | fscanf(file, " " DBLFMT, &prm->Solty[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 756 | fscanf(file, " " DBLFMT, &prm->HB12[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 763 | fscanf(file, " " DBLFMT, &prm->HB6[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 771 | fscanf(file, " " DBLFMT, &H[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 | &prm->Natcap, &prm->Cutcap, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 | &prm->Xcap, &prm->Ycap, &prm->Zcap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 233 | fread(brick, sizeof(char), 512, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fread(fileHeader, sizeof(short), 19, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 186 | fread(line3, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdheader’: contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’ 284 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 285 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’ 291 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’ 305 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 306 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’ 307 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’ 311 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’ 313 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’ 318 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 319 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’ 320 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’ 328 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 329 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’ 330 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’ 354 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 355 | fread(vertex, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’ 356 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’ 357 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 358 | fread(access, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’ 359 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’ 360 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 361 | fread(normal, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’ 362 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’ 371 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | fread(triangle, 3 * sizeof(int), ntriangles, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’ 373 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’ 374 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 375 | fread(properties, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’ 394 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 395 | fread(striangle, sizeof(short), 3 * ntriangles, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’ 396 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’ 397 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 398 | fread(properties, sizeof(float), 3 * nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 222 | if (input_integer[0] != dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’: contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable] 546 | fio_size_t readlen; /* number of bytes actually read */ | ^~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function ‘int read_spider_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 286 | fread(datablock, total * sizeof(float), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable] 459 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’: contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 116 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 132 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 149 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 161 | fgets(line, 80, infile); //one more read to keep us in sync | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 170 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 217 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 256 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60: At top level: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function] 609 | static int fio_write_str(fio_fd fd, const char *str) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function] 605 | static int fio_read_int32(fio_fd fd, int *i) { | ^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function] 459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable] 1407 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable] 1541 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fread(&dataBegin, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1629 | fread (&len, sizeof(int), 1, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1631 | fread (str, len, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:23, from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31: In function ‘strncpy’, inlined from ‘get_pdb_cryst1’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:277:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5, inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2057 | fread (ptr, 1, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2063 | fread (ptr, 1, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2069 | fread (ptr, 2, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2075 | fread (ptr, 2, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2081 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2087 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2093 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2099 | fread (ptr, 8, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from /usr/include/string.h:495, from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:43: In function ‘strncpy’, inlined from ‘read_vaspxml_structure.part.0’ at contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:150:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 175 | fgets(readbuf, 1023, cube->fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 181 | fgets(readbuf, 1023, cube->fd); // skip second header line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 326 | fgets(readbuf, 1023, cube->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 337 | fgets(readbuf, 1023, cube->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 339 | fscanf(cube->fd, "%d", &cube->nsets); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 344 | fscanf(cube->fd, "%d", &orb); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In function ‘strncpy’, inlined from ‘get_pdb_header’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5, inlined from ‘open_pdb_read’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_header’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5, inlined from ‘open_pdb_read’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 102 | fread(&headersize, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’: contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_structure’: contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 730 | if (len > sizeof(name)) { | ^ contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_timestep’: contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) { | ^ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5, inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 545 | for (i=0; ifile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 297 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 319 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 357 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 223 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_rundata’: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 241 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 164 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 176 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 183 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] 127 | sprintf(atom->resname, "%d", resid); | ^~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] 127 | sprintf(atom->resname, "%d", resid); | ^~~~ In file included from /usr/include/stdio.h:867, from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 8 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable ‘hessian_data’ set but not used [-Wunused-but-set-variable] 596 | molfile_qm_hessian_t *hessian_data; | ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_timestep(void*, int, molfile_timestep_t*)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 328 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 346 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 355 | fgets(nextline, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 419 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 194 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 203 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 59 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | fread(intHeader, sizeof(int), 5, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 82 | fread(floatHeader, sizeof(float), 6, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 426 | fgets(buf, n, mf->f); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’: contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 96 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 104 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 131 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 162 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 171 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Block.cpp -o build/temp.linux-x86_64-3.9/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: At top level: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function] 1097 | static void whereami(FILE *file) { | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function] 1077 | static void thisline(FILE *file) { | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function] 1006 | static int have_keyline(FILE *file, const char *keystring1, | ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function] 711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms, | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function] 585 | static void print_matrix4(const float mat[16]) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function] 507 | static void del_wavefunction(qm_timestep_t *ts) { | ^~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function] 490 | static void replace_wavefunction(qm_timestep_t *ts, int n) { | ^~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function] 133 | static int get_pte_idx(const char *label) | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function] 109 | static float get_pte_vdw_radius(const int idx) | ^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function] 102 | static float get_pte_mass(const int idx) | ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function] 95 | static const char *get_pte_label(const int idx) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function ‘int read_parm7_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 78 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function] 111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 257 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_resnames(const char*, int, char*, FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 275 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 289 | fscanf(file, " %d", &cur); | ~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 545 | for (i=0; ititle, sizeof(prm->title), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 427 | fgets(sdum, sizeof(sdum), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 439 | fscanf(file,parm7, | ~~~~~~^~~~~~~~~~~~ 440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 | &prm->Jparm, &prm->Nparm); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 443 | fscanf(file, parm7, | ~~~~~~^~~~~~~~~~~~~ 444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 | &prm->Natyp, &prm->Nphb); | ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 451 | fscanf(file,"%8d",&prm->Numextra); //BB | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 87 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘have_gamess’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable] 1106 | char word[3][BUFSIZ]; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_stats’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable] 2264 | char word[7][BUFSIZ]; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_wavefunction’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable] 3573 | char word[6][BUFSIZ]; | ^~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function] 111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) | ^~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Deferred.cpp -o build/temp.linux-x86_64-3.9/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Feedback.cpp -o build/temp.linux-x86_64-3.9/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/File.cpp -o build/temp.linux-x86_64-3.9/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-x86_64-3.9/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 At top level: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: ‘print_input_data’ defined but not used [-Wunused-function] 1002 | static void print_input_data(qmdata_t *data) { | ^~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function] 133 | static int get_pte_idx(const char *label) | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function] 109 | static float get_pte_vdw_radius(const int idx) | ^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function] 102 | static float get_pte_mass(const int idx) | ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function] 95 | static const char *get_pte_label(const int idx) | ^~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function] 1097 | static void whereami(FILE *file) { | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function] 1077 | static void thisline(FILE *file) { | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function] 1028 | static int fpexpftoc(char *ftocstr) { | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function] 901 | static char *strtoupper(char *s) { | ^~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function] 895 | static int iswhiteline(char *s) { | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function] 585 | static void print_matrix4(const float mat[16]) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fgets(readbuf, 13, edm->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44 | fgets(readbuf, 1024, fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Map.cpp -o build/temp.linux-x86_64-3.9/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Matrix.cpp -o build/temp.linux-x86_64-3.9/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:34: In function ‘strncpy’, inlined from ‘read_molden_structure’ at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_molden_structure’ at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_molden_structure’ at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_molden_structure’ at contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-x86_64-3.9/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 238 | fgets(readbuf, 1024, fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 408 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 442 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-x86_64-3.9/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 444 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 446 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 448 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 450 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 473 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 508 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 288 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 297 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 365 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 387 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 395 | fgets(nextline, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 455 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 241 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 250 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 72 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable] 443 | int i, uid; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable] 484 | int i, count, atomdata, pos, idx, xyzcount, j; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable] 503 | char oldChain[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable] 803 | int bondTable[32]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable] 807 | int i, pos, j, k; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable] 811 | char modelNum[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable] 822 | molfile_atom_t * atom; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable] 884 | int test = parser->nbonds + bnum; | ^~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable] 984 | int bondTable[32]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable] 988 | int i, pos, j, k; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable] 991 | char modelNum[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable] 1002 | molfile_atom_t * atom; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable] 1409 | FILE* fd; | ^~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-x86_64-3.9/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from /usr/include/stdio.h:867, from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:29: In function ‘sprintf’, inlined from ‘vtf_error’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:3, inlined from ‘vtf_read_bonds’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1203:5, inlined from ‘vtf_read_bonds’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1193:12: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Sphere.cpp -o build/temp.linux-x86_64-3.9/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Err.cpp -o build/temp.linux-x86_64-3.9/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from /usr/include/string.h:495, from contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:32: In function ‘strncat’, inlined from ‘vtf_parse_atom’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9, inlined from ‘vtf_parse_structure’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24, inlined from ‘_vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5, inlined from ‘vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:155: In function ‘strncpy’, inlined from ‘read_gamess_structure’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:477:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_gamess_structure’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:478:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘vtf_parse_atom’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7, inlined from ‘vtf_parse_structure’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24, inlined from ‘_vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5, inlined from ‘vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Texture.cpp -o build/temp.linux-x86_64-3.9/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Triangle.cpp -o build/temp.linux-x86_64-3.9/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Util2.cpp -o build/temp.linux-x86_64-3.9/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In function ‘strncpy’, inlined from ‘read_gamess_rundata’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_gamess_rundata’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_gamess_rundata’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_gamess_rundata’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Word.cpp -o build/temp.linux-x86_64-3.9/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Basis.cpp -o build/temp.linux-x86_64-3.9/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In function ‘strncpy’, inlined from ‘get_coordinates’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/CGO.cpp -o build/temp.linux-x86_64-3.9/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Character.cpp -o build/temp.linux-x86_64-3.9/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Control.cpp -o build/temp.linux-x86_64-3.9/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 292 | if (NULL == fgets(fbuffer, 1024, data->file)) | ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 295 | if (NULL == fgets(fbuffer, 1024, data->file)) | ^~ In file included from /usr/include/string.h:495, from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:53: In function ‘strncpy’, inlined from ‘read_xyz_structure’ at contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘read_xyz_structure’ at contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:127:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-x86_64-3.9/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Font.cpp -o build/temp.linux-x86_64-3.9/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-x86_64-3.9/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from /usr/include/string.h:495, from contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:34: In function ‘strncpy’, inlined from ‘read_dlpoly_config_structure’ at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-x86_64-3.9/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-x86_64-3.9/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In function ‘strncat’, inlined from ‘get_basis_options’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘get_basis_options’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-x86_64-3.9/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In function ‘strncpy’, inlined from ‘read_dlpoly_structure’ at contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-x86_64-3.9/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-x86_64-3.9/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Movie.cpp -o build/temp.linux-x86_64-3.9/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 166 | char *name, *type; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable] 166 | char *name, *type; | ^~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/P.cpp -o build/temp.linux-x86_64-3.9/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Field.cpp -o build/temp.linux-x86_64-3.9/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In file included from /usr/include/string.h:495, from contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:34: In function ‘strncpy’, inlined from ‘get_pqr_cryst1’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3, inlined from ‘read_pqr_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:319:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3, inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3, inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3, inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_pqr_fields’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3, inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-x86_64-3.9/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In function ‘strncpy’, inlined from ‘get_fmoxyz’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5, inlined from ‘get_input_structure’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1537:12: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Picking.cpp -o build/temp.linux-x86_64-3.9/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-x86_64-3.9/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Vector.cpp -o build/temp.linux-x86_64-3.9/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Rep.cpp -o build/temp.linux-x86_64-3.9/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-x86_64-3.9/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-x86_64-3.9/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-x86_64-3.9/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In function ‘strncpy’, inlined from ‘get_proc_mem.isra’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘get_proc_mem.isra’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-x86_64-3.9/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Crystal.cpp -o build/temp.linux-x86_64-3.9/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/FontType.cpp -o build/temp.linux-x86_64-3.9/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In function ‘strncpy’, inlined from ‘get_contrl’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Parse.cpp -o build/temp.linux-x86_64-3.9/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Seq.cpp -o build/temp.linux-x86_64-3.9/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Match.cpp -o build/temp.linux-x86_64-3.9/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In function ‘strncpy’, inlined from ‘get_contrl_firefly’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Pop.cpp -o build/temp.linux-x86_64-3.9/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Shaker.cpp -o build/temp.linux-x86_64-3.9/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Text.cpp -o build/temp.linux-x86_64-3.9/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/os_gl.cpp -o build/temp.linux-x86_64-3.9/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 In function ‘strncpy’, inlined from ‘symmetry_expand’ at contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5, inlined from ‘get_traj_frame.constprop’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2931:7: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/View.cpp -o build/temp.linux-x86_64-3.9/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-x86_64-3.9/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-x86_64-3.9/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CifFile.cpp -o build/temp.linux-x86_64-3.9/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1902:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable] 1902 | int last_ctnumber = -1; | ^~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Tracker.cpp -o build/temp.linux-x86_64-3.9/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-x86_64-3.9/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Color.cpp -o build/temp.linux-x86_64-3.9/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-x86_64-3.9/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-x86_64-3.9/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-x86_64-3.9/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer1/P.cpp: In function ‘void PSetupEmbedded(PyMOLGlobals*, int, char**)’: layer1/P.cpp:1961:22: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 1961 | PyEval_InitThreads(); | ^ In file included from /usr/include/python3.9/Python.h:145, from layer0/os_python.h:32, from layer1/P.cpp:26: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Extrude.cpp -o build/temp.linux-x86_64-3.9/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘void DDmkdir(const string&, mode_t, int, int)’: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:16: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 714 | sprintf(sub, "%03x/", i); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: note: directive argument in the range [0, 2147483646] 714 | sprintf(sub, "%03x/", i); | ^~~~~~~ In file included from /usr/include/stdio.h:867, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 6 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 722 | sprintf(subsub, "%03x", j); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: note: directive argument in the range [0, 2147483646] 722 | sprintf(subsub, "%03x", j); | ^~~~~~ In file included from /usr/include/stdio.h:867, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 4 and 9 bytes into a destination of size 6 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Scene.cpp -o build/temp.linux-x86_64-3.9/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘std::string framefile(const string&, size_t, size_t, int, int)’: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:28: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 675 | sprintf(answer, "%03x/", d1); | ^ In file included from /usr/include/stdio.h:867, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 9 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:28: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: note: directive argument in the range [0, 2147483646] 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 9 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-x86_64-3.9/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ButMode.cpp -o build/temp.linux-x86_64-3.9/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-x86_64-3.9/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-x86_64-3.9/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-x86_64-3.9/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Setting.cpp -o build/temp.linux-x86_64-3.9/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-x86_64-3.9/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-x86_64-3.9/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Ray.cpp -o build/temp.linux-x86_64-3.9/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Wizard.cpp -o build/temp.linux-x86_64-3.9/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/PConv.cpp -o build/temp.linux-x86_64-3.9/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/Util.cpp -o build/temp.linux-x86_64-3.9/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-x86_64-3.9/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-x86_64-3.9/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-x86_64-3.9/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/Ortho.cpp -o build/temp.linux-x86_64-3.9/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer2/CoordSet.cpp: In member function ‘void CoordSet::update(int)’: layer2/CoordSet.cpp:1240:72: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] 1240 | PRINTFB(G, FB_CoordSet, FB_Blather) " CoordSetUpdate-Entered: object %s state %d cset %p\n", | ^~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-x86_64-3.9/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-x86_64-3.9/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-x86_64-3.9/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-x86_64-3.9/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDot.cpp -o build/temp.linux-x86_64-3.9/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-x86_64-3.9/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-x86_64-3.9/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-x86_64-3.9/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/DistSet.cpp -o build/temp.linux-x86_64-3.9/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-x86_64-3.9/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-x86_64-3.9/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-x86_64-3.9/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-x86_64-3.9/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-x86_64-3.9/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Editor.cpp -o build/temp.linux-x86_64-3.9/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer2/ObjectMesh.cpp: In function ‘void ObjectMeshDump(ObjectMesh*, const char*, int, int)’: layer2/ObjectMesh.cpp:329:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] 329 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectMesh.cpp:33: layer0/Feedback.h:274:15: note: ‘snprintf’ output 31 or more bytes (assuming 286) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:328:7: note: in expansion of macro ‘PRINTFB’ 328 | PRINTFB(I->G, FB_ObjectMesh, FB_Actions) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-x86_64-3.9/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer2/ObjectMesh.cpp: In member function ‘virtual void ObjectMesh::update()’: layer2/ObjectMesh.cpp:507:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] 507 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectMesh.cpp:33: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 50 and 305 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:506:9: note: in expansion of macro ‘PRINTFB’ 506 | PRINTFB(I->G, FB_ObjectMesh, FB_Errors) | ^~~~~~~ layer2/ObjectMesh.cpp:540:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] 540 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectMesh.cpp:33: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 27 and 282 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:539:13: note: in expansion of macro ‘PRINTFB’ 539 | PRINTFB(G, FB_ObjectMesh, FB_Details) | ^~~~~~~ layer2/ObjectSurface.cpp: In function ‘void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)’: layer2/ObjectSurface.cpp:264:30: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] 264 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSurface.cpp:33: layer0/Feedback.h:274:15: note: ‘snprintf’ output 34 or more bytes (assuming 289) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSurface.cpp:263:7: note: in expansion of macro ‘PRINTFB’ 263 | PRINTFB(I->G, FB_ObjectSurface, FB_Actions) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-x86_64-3.9/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-x86_64-3.9/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-x86_64-3.9/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer1/Ray.cpp: In function ‘void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)’: layer1/Ray.cpp:1538:20: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=] 1538 | "%s" | ^~ ...... 1543 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); | ~~~~~~~~ layer1/Ray.cpp:1533:18: note: ‘sprintf’ output between 116 and 3302 bytes into a destination of size 1024 1533 | sprintf(buffer, | ~~~~~~~^~~~~~~~ 1534 | "Transform {\n" | ~~~~~~~~~~~~~~~ 1535 | " translation %8.6f %8.6f %8.6f\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1536 | " rotation %8.6f %8.6f %8.6f %8.6f\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1537 | " children [\n" | ~~~~~~~~~~~~~~~ 1538 | "%s" | ~~~~ 1539 | " ]\n" | ~~~~~~ 1540 | "}\n", | ~~~~~~ 1541 | vert2[0] - mid[0], | ~~~~~~~~~~~~~~~~~~ 1542 | vert2[1] - mid[1], | ~~~~~~~~~~~~~~~~~~ 1543 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-x86_64-3.9/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-x86_64-3.9/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-x86_64-3.9/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/VFont.cpp -o build/temp.linux-x86_64-3.9/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-x86_64-3.9/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer2/ObjectSurface.cpp: In member function ‘virtual void ObjectSurface::update()’: layer2/ObjectSurface.cpp:493:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] 493 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSurface.cpp:33: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSurface.cpp:492:13: note: in expansion of macro ‘PRINTFB’ 492 | PRINTFB(I->G, FB_ObjectSurface, FB_Details) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-x86_64-3.9/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Seeker.cpp -o build/temp.linux-x86_64-3.9/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-x86_64-3.9/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/Menu.cpp -o build/temp.linux-x86_64-3.9/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-x86_64-3.9/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-x86_64-3.9/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/main.cpp -o build/temp.linux-x86_64-3.9/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-x86_64-3.9/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer2/ObjectMolecule2.cpp: In function ‘int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)’: layer2/ObjectMolecule2.cpp:313:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] 313 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", | ^~ In file included from /usr/include/stdio.h:867, from /usr/include/malloc.h:24, from layer0/os_predef.h:86, from layer0/os_python.h:21, from layer2/ObjectMolecule2.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 26 and 291 bytes into a destination of size 255 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-x86_64-3.9/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-x86_64-3.9/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-x86_64-3.9/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer2/ObjectMap.cpp: In function ‘void ObjectMapDump(const ObjectMap*, const char*, int, int)’: layer2/ObjectMap.cpp:5982:24: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=] 5982 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G); | ^~ In file included from /usr/include/stdio.h:867, from /usr/include/malloc.h:24, from layer0/os_predef.h:86, from layer0/os_python.h:21, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output 30 or more bytes (assuming 285) into a destination of size 255 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-x86_64-3.9/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-x86_64-3.9/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-x86_64-3.9/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-x86_64-3.9/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-x86_64-3.9/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer1/Scene.cpp: In function ‘int SceneClick(Block*, int, int, int, int, double)’: layer1/Scene.cpp:4227:36: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] 4227 | PRINTF " You clicked %s", buffer ENDF(G); | ^~ ~~~~~~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer1/Scene.cpp:33: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 14 and 1037 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer1/Scene.cpp:4227:15: note: in expansion of macro ‘PRINTF’ 4227 | PRINTF " You clicked %s", buffer ENDF(G); | ^~~~~~ layer1/Scene.cpp:4097:34: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] 4097 | PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G); | ^~ ~~~~~~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer1/Scene.cpp:33: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 23 and 1046 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer1/Scene.cpp:4097:13: note: in expansion of macro ‘PRINTF’ 4097 | PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G); | ^~~~~~ layer1/Scene.cpp:4113:36: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] 4113 | PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G); | ^~ ~~~~~~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer1/Scene.cpp:33: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 23 and 1046 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer1/Scene.cpp:4113:15: note: in expansion of macro ‘PRINTF’ 4113 | PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G); | ^~~~~~ layer1/Scene.cpp:4121:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=] 4121 | sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2); | ^~ ~~~~ layer1/Scene.cpp:4121:22: note: ‘sprintf’ output between 16 and 2062 bytes into a destination of size 1024 4121 | sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:3984:38: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] 3984 | PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G); | ^~ ~~~~~~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer1/Scene.cpp:33: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 24 and 1047 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer1/Scene.cpp:3984:17: note: in expansion of macro ‘PRINTF’ 3984 | PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G); | ^~~~~~ layer1/Scene.cpp:3990:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=] 3990 | sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer); | ^~ ~~~~~~ layer1/Scene.cpp:3990:24: note: ‘sprintf’ output between 22 and 1045 bytes into a destination of size 1024 3990 | sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4018:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 4018 | PRINTF " You unpicked %s.", buffer ENDF(G); | ^~ ~~~~~~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer1/Scene.cpp:33: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 16 and 1039 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer1/Scene.cpp:4018:17: note: in expansion of macro ‘PRINTF’ 4018 | PRINTF " You unpicked %s.", buffer ENDF(G); | ^~~~~~ layer1/Scene.cpp:4031:64: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] 4031 | PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer, | ^~ ~~~~~~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer1/Scene.cpp:33: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 21 and 1299 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer1/Scene.cpp:4031:17: note: in expansion of macro ‘PRINTFB’ 4031 | PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer, | ^~~~~~~ layer1/Scene.cpp:4285:34: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] 4285 | PRINTF " You clicked %s", buffer ENDF(G); | ^~ ~~~~~~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer1/Scene.cpp:33: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 14 and 1037 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer1/Scene.cpp:4285:13: note: in expansion of macro ‘PRINTF’ 4285 | PRINTF " You clicked %s", buffer ENDF(G); | ^~~~~~ layer1/Scene.cpp:4319:53: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] 4319 | sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1); | ^~ ~~~~ layer1/Scene.cpp:4319:22: note: ‘sprintf’ output between 24 and 1047 bytes into a destination of size 1024 4319 | sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4310:50: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1007 [-Wformat-overflow=] 4310 | sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1); | ^~ ~~~~ layer1/Scene.cpp:4310:22: note: ‘sprintf’ output between 21 and 1044 bytes into a destination of size 1024 4310 | sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4369:45: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] 4369 | sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1); | ^~ ~~~~ layer1/Scene.cpp:4369:31: note: directive argument in the range [-2147483647, 2147483647] 4369 | sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4369:22: note: ‘sprintf’ output between 23 and 1056 bytes into a destination of size 1024 4369 | sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4341:47: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] 4341 | sprintf(buffer, "cmd.origin(\"%s\")", buf1); | ^~ ~~~~ layer1/Scene.cpp:4341:24: note: ‘sprintf’ output between 15 and 1038 bytes into a destination of size 1024 4341 | sprintf(buffer, "cmd.origin(\"%s\")", buf1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4347:38: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] 4347 | PRINTF " You clicked %s", buffer ENDF(G); | ^~ ~~~~~~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer1/Scene.cpp:33: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 14 and 1037 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer1/Scene.cpp:4347:17: note: in expansion of macro ‘PRINTF’ 4347 | PRINTF " You clicked %s", buffer ENDF(G); | ^~~~~~ layer1/Scene.cpp:4434:35: warning: ‘)’ directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] 4434 | sprintf(buf2, "%s(%s)", sel_mode_kw, buffer); | ^ layer1/Scene.cpp:4434:22: note: ‘sprintf’ output between 3 and 1026 bytes into a destination of size 1024 4434 | sprintf(buf2, "%s(%s)", sel_mode_kw, buffer); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4441:57: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1008 [-Wformat-overflow=] 4441 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw, | ^~ 4442 | buf1); | ~~~~ layer1/Scene.cpp:4441:26: note: ‘sprintf’ output 20 or more bytes (assuming 1043) into a destination of size 1024 4441 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | buf1); | ~~~~~ layer1/Scene.cpp:4416:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1015 [-Wformat-overflow=] 4416 | sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", | ^~ 4417 | selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, | ~~~~~~ layer1/Scene.cpp:4416:22: note: ‘sprintf’ output 35 or more bytes (assuming 2081) into a destination of size 1024 4416 | sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4417 | selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4418 | selName); | ~~~~~~~~ layer1/Scene.cpp:4425:47: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1015 [-Wformat-overflow=] 4425 | sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", | ^~ 4426 | selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, | ~~~~~~ layer1/Scene.cpp:4425:26: note: ‘sprintf’ output 35 or more bytes (assuming 2081) into a destination of size 1024 4425 | sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4426 | selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4427 | selName); | ~~~~~~~~ layer1/Scene.cpp:4428:57: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1008 [-Wformat-overflow=] 4428 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, | ^~ 4429 | sel_mode_kw, buf2); | ~~~~ layer1/Scene.cpp:4428:26: note: ‘sprintf’ output 29 or more bytes (assuming 1052) into a destination of size 1024 4428 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4429 | sel_mode_kw, buf2); | ~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4393:32: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1022 [-Wformat-overflow=] 4393 | sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer); | ^~ ~~~~~~ layer1/Scene.cpp:4393:20: note: ‘sprintf’ output between 5 and 1028 bytes into a destination of size 1024 4393 | sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4404:55: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1008 [-Wformat-overflow=] 4404 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, | ^~ 4405 | sel_mode_kw, buf1); | ~~~~ layer1/Scene.cpp:4404:24: note: ‘sprintf’ output 29 or more bytes (assuming 1052) into a destination of size 1024 4404 | sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4405 | sel_mode_kw, buf1); | ~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp: In function ‘void EditorPrepareDrag(PyMOLGlobals*, CObject*, int, int, int, int)’: layer3/Editor.cpp:1944:29: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] 1944 | " Editor: grabbing (%s).", name ENDFB(G); | ^~ ~~~~ In file included from layer1/Ortho.h:32, from layer1/ButMode.h:20, from layer3/Editor.cpp:28: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 22 and 277 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Editor.cpp:1943:7: note: in expansion of macro ‘PRINTFB’ 1943 | PRINTFB(G, FB_Editor, FB_Blather) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-x86_64-3.9/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-x86_64-3.9/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/PopUp.cpp -o build/temp.linux-x86_64-3.9/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer4/Cmd.cpp -o build/temp.linux-x86_64-3.9/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer3/Editor.cpp: In function ‘void EditorDefineExtraPks(PyMOLGlobals*)’: layer3/Editor.cpp:335:29: warning: ‘%s’ directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=] 335 | sprintf(buffer, "(byres %s)", name); | ^~ ~~~~ layer3/Editor.cpp:335:12: note: ‘sprintf’ output between 9 and 264 bytes into a destination of size 256 335 | sprintf(buffer, "(byres %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:337:31: warning: ‘%s’ directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=] 337 | sprintf(buffer, "(bychain %s)", name); | ^~ ~~~~ layer3/Editor.cpp:337:12: note: ‘sprintf’ output between 11 and 266 bytes into a destination of size 256 337 | sprintf(buffer, "(bychain %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:339:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=] 339 | sprintf(buffer, "(byobject %s)", name); | ^~ ~~~~ layer3/Editor.cpp:339:12: note: ‘sprintf’ output between 12 and 267 bytes into a destination of size 256 339 | sprintf(buffer, "(byobject %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Seeker.cpp: In function ‘void SeekerSelectionToggleRange(PyMOLGlobals*, CSeqRow*, int, int, int, int, int)’: layer3/Seeker.cpp:148:50: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 754 and 1009 [-Wformat-overflow=] 148 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, | ^~ 149 | buf1); | ~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/malloc.h:24, from layer0/os_predef.h:86, from layer0/os_python.h:21, from layer3/Seeker.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 28 or more bytes (assuming 1306) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Seeker.cpp: In function ‘void SeekerSelectionToggle(PyMOLGlobals*, CSeqRow*, int, int, int, int)’: layer3/Seeker.cpp:232:50: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 754 and 1009 [-Wformat-overflow=] 232 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, | ^~ 233 | buf1); | ~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/malloc.h:24, from layer0/os_predef.h:86, from layer0/os_python.h:21, from layer3/Seeker.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 28 or more bytes (assuming 1306) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-x86_64-3.9/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer5/PyMOL.cpp: In function ‘void init_python(int, char**)’: layer5/PyMOL.cpp:1798:22: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 1798 | PyEval_InitThreads(); | ^ In file included from /usr/include/python3.9/Python.h:145, from layer0/os_python.h:32, from layer5/PyMOL.cpp:17: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-x86_64-3.9/modules/cealign/src/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-x86_64-3.9/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer3/PlugIOManager.cpp: In function ‘CObject* PlugIOManagerLoad(PyMOLGlobals*, CObject**, const char*, int, int, const char*, int)’: layer3/PlugIOManager.cpp:939:65: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] 939 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); | ^~ In file included from /usr/include/stdio.h:867, from /usr/include/malloc.h:24, from layer0/os_predef.h:86, from layer0/os_python.h:21, from layer3/PlugIOManager.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 58 and 313 bytes into a destination of size 255 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-x86_64-3.9/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Executive.cpp -o build/temp.linux-x86_64-3.9/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer2/ObjectVolume.cpp: In function ‘ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)’: layer2/ObjectVolume.cpp:74:33: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] 74 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName | ^~ In file included from /usr/include/stdio.h:867, from /usr/include/malloc.h:24, from layer0/os_predef.h:86, from layer0/os_python.h:21, from layer2/ObjectVolume.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 46 and 301 bytes into a destination of size 255 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-x86_64-3.9/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/Selector.cpp -o build/temp.linux-x86_64-3.9/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer2/ObjectMolecule.cpp: In function ‘CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)’: layer2/ObjectMolecule.cpp:7785:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=] 7785 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G) | ^~ ~~~~~~~ In file included from layer1/Ortho.h:32, from layer2/ObjectMolecule.cpp:35: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 34 and 289 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMolecule.cpp:7784:3: note: in expansion of macro ‘PRINTFB’ 7784 | PRINTFB(G, FB_ObjectMolecule, FB_Blather) | ^~~~~~~ layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’: layer2/ObjectMap.cpp:2977:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2977 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:867, from /usr/include/malloc.h:24, from layer0/os_predef.h:86, from layer0/os_python.h:21, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2986:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2986 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:867, from /usr/include/malloc.h:24, from layer0/os_predef.h:86, from layer0/os_python.h:21, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2992:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2992 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:867, from /usr/include/malloc.h:24, from layer0/os_predef.h:86, from layer0/os_python.h:21, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:3074:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 3074 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:867, from /usr/include/malloc.h:24, from layer0/os_predef.h:86, from layer0/os_python.h:21, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-x86_64-3.9/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-x86_64-3.9/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveLoad(PyMOLGlobals*, const ExecutiveLoadArgs&)’: layer3/Executive.cpp:3914:15: warning: unused variable ‘object_props’ [-Wunused-variable] 3914 | const char* object_props = args.object_props.c_str(); | ^~~~~~~~~~~~ layer3/Executive.cpp:3915:15: warning: unused variable ‘atom_props’ [-Wunused-variable] 3915 | const char* atom_props = args.atom_props.c_str(); | ^~~~~~~~~~ layer3/Executive.cpp:3924:8: warning: unused variable ‘mimic’ [-Wunused-variable] 3924 | auto mimic = args.mimic; | ^~~~~ layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’: layer2/ObjectMap.cpp:4297:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] 4297 | " ObjectMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:867, from /usr/include/malloc.h:24, from layer0/os_predef.h:86, from layer0/os_python.h:21, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:4297:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] 4297 | " ObjectMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In file included from /usr/include/stdio.h:867, from /usr/include/malloc.h:24, from layer0/os_predef.h:86, from layer0/os_python.h:21, from layer2/ObjectMap.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::update()’: layer2/ObjectSlice.cpp:639:42: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] 639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSlice.cpp:34: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 51 and 306 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSlice.cpp:638:9: note: in expansion of macro ‘PRINTFB’ 638 | PRINTFB(I->G, FB_ObjectSlice, FB_Errors) | ^~~~~~~ layer2/ObjectSlice.cpp:650:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] 650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSlice.cpp:34: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 28 and 283 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSlice.cpp:649:11: note: in expansion of macro ‘PRINTFB’ 649 | PRINTFB(I->G, FB_ObjectSlice, FB_Blather) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-x86_64-3.9/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-x86_64-3.9/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer2/ObjectMolecule.cpp: In member function ‘virtual void ObjectMolecule::update()’: layer2/ObjectMolecule.cpp:10827:82: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] 10827 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer2/ObjectMolecule.cpp:35: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 68 and 333 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMolecule.cpp:10826:13: note: in expansion of macro ‘PRINTFB’ 10826 | PRINTFB(G, FB_ObjectMolecule, FB_Blather) | ^~~~~~~ layer2/ObjectMolecule.cpp: In function ‘int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)’: layer2/ObjectMolecule.cpp:10955:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] 10955 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ^~ 10956 | buffer, v[0], v[1], v[2], state + 1, mode, 0); | ~~~~~~ layer2/ObjectMolecule.cpp:10955:21: note: directive argument in the range [-2147483647, 2147483647] 10955 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp:10955:14: note: ‘sprintf’ output between 78 and 2036 bytes into a destination of size 1024 10955 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 10956 | buffer, v[0], v[1], v[2], state + 1, mode, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)’: layer3/Executive.cpp:9162:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=] 9162 | " Remove: eliminated %d atoms in model \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 42 and 307 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9161:15: note: in expansion of macro ‘PRINTFB’ 9161 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)’: layer3/Executive.cpp:11590:28: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11590 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~ 11591 | name, nSet, obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11590:17: note: directive argument in the range [1, 2147483647] 11590 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 560 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11589:15: note: in expansion of macro ‘PRINTF’ 11589 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function ‘PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)’: layer3/Executive.cpp:11672:19: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11672 | " Getting: %s for %d bonds in object \"%s\".\n", | ^~ 11673 | name, nSet, obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11672:8: note: directive argument in the range [1, 2147483647] 11672 | " Getting: %s for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 38 and 556 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11671:6: note: in expansion of macro ‘PRINTF’ 11671 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)’: layer3/Executive.cpp:11775:62: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=] 11775 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 306) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11774:17: note: in expansion of macro ‘PRINTF’ 11774 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)’: layer3/Executive.cpp:11851:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11851 | " Setting: %s unset for %d bonds in object \"%s\".\n", | ^~ 11852 | name, nSet, rec->obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11851:15: note: directive argument in the range [1, 2147483647] 11851 | " Setting: %s unset for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 44 and 562 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11850:13: note: in expansion of macro ‘PRINTF’ 11850 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, const char*, int, int, int)’: layer3/Executive.cpp:12034:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] 12034 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12033:25: note: in expansion of macro ‘PRINTF’ 12033 | PRINTF | ^~~~~~ layer3/Executive.cpp:12034:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] 12034 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12033:25: note: in expansion of macro ‘PRINTF’ 12033 | PRINTF | ^~~~~~ layer3/Executive.cpp:11945:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11945 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~ 11946 | name, value, nObj, state + 1 ENDF(G); | ~~~~~ layer3/Executive.cpp:11945:21: note: directive argument in the range [1, 2147483647] 11945 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:11945:21: note: directive argument in the range [1, 2147483647] In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1084) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11944:19: note: in expansion of macro ‘PRINTF’ 11944 | PRINTF | ^~~~~~ layer3/Executive.cpp:11942:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11942 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); | ^~ ~~~~~ layer3/Executive.cpp:11942:21: note: directive argument in the range [1, 2147483647] 11942 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1066) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11941:19: note: in expansion of macro ‘PRINTF’ 11941 | PRINTF | ^~~~~~ layer3/Executive.cpp:12066:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 12066 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12067 | name, value, rec->obj->Name, state + 1 ENDF(G); | ~~~~~ layer3/Executive.cpp:12066:25: note: directive argument in the range [1, 2147483647] 12066 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1330) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12065:23: note: in expansion of macro ‘PRINTF’ 12065 | PRINTF | ^~~~~~ layer3/Executive.cpp:12059:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 12059 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12060 | name, value, rec->obj->Name ENDF(G); | ~~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1312) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12058:23: note: in expansion of macro ‘PRINTF’ 12058 | PRINTF | ^~~~~~ layer3/Executive.cpp:11901:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11901 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); | ^~ ~~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output 21 or more bytes (assuming 1044) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11901:11: note: in expansion of macro ‘PRINTF’ 11901 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); | ^~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)’: layer3/Executive.cpp:12283:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12283 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ 12284 | name, op.i4, rec->obj->Name ENDF(G); | ~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12282:23: note: in expansion of macro ‘PRINTF’ 12282 | PRINTF | ^~~~~~ layer3/Executive.cpp:12251:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12251 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~ 12252 | name, value2, nObj, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12251:21: note: directive argument in the range [1, 2147483647] 12251 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12251:21: note: directive argument in the range [1, 2147483647] In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1338 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12250:19: note: in expansion of macro ‘PRINTF’ 12250 | PRINTF | ^~~~~~ layer3/Executive.cpp:12248:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12248 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); | ^~ ~~~~ layer3/Executive.cpp:12248:21: note: directive argument in the range [1, 2147483647] 12248 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1320 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12247:19: note: in expansion of macro ‘PRINTF’ 12247 | PRINTF | ^~~~~~ layer3/Executive.cpp:12315:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12315 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12316 | name, value2, rec->obj->Name, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12315:25: note: directive argument in the range [1, 2147483647] 12315 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12314:23: note: in expansion of macro ‘PRINTF’ 12314 | PRINTF | ^~~~~~ layer3/Executive.cpp:12307:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12307 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12308 | name, value2, rec->obj->Name ENDF(G); | ~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12306:23: note: in expansion of macro ‘PRINTF’ 12306 | PRINTF | ^~~~~~ layer3/Executive.cpp:12211:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12211 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~ ~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12211:11: note: in expansion of macro ‘PRINTF’ 12211 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, CObject*, int, int, int)’: layer3/Executive.cpp:12380:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12380 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12381 | name, value2, obj->Name, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12380:19: note: directive argument in the range [1, 2147483647] 12380 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12379:17: note: in expansion of macro ‘PRINTF’ 12379 | PRINTF | ^~~~~~ layer3/Executive.cpp:12372:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12372 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12373 | name, value2, obj->Name ENDF(G); | ~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12371:17: note: in expansion of macro ‘PRINTF’ 12371 | PRINTF | ^~~~~~ layer3/Executive.cpp:12351:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12351 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~ ~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12351:11: note: in expansion of macro ‘PRINTF’ 12351 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveUnsetSetting(PyMOLGlobals*, int, const char*, int, int, int)’: layer3/Executive.cpp:12490:68: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=] 12490 | " Setting: %s unset for %d atoms in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output 44 or more bytes (assuming 299) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12489:21: note: in expansion of macro ‘PRINTF’ 12489 | PRINTF | ^~~~~~ layer3/Executive.cpp:12515:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] 12515 | " Setting: %s unset in object \"%s\", state %d.\n", | ^~ layer3/Executive.cpp:12515:25: note: directive argument in the range [1, 2147483647] 12515 | " Setting: %s unset in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output 41 or more bytes (assuming 305) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12514:23: note: in expansion of macro ‘PRINTF’ 12514 | PRINTF | ^~~~~~ layer3/Executive.cpp:12509:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] 12509 | " Setting: %s unset in object \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:282:53: note: ‘snprintf’ output 32 or more bytes (assuming 287) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12508:23: note: in expansion of macro ‘PRINTF’ 12508 | PRINTF | ^~~~~~ layer3/Selector.cpp: In function ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’: layer3/Selector.cpp:1830:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] 1830 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", | ^~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6545, from /usr/include/c++/10/string:55, from layer3/Selector.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 59 and 324 bytes into a destination of size 255 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)’: layer3/Executive.cpp:6023:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=] 6023 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G); | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 311 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:6022:7: note: in expansion of macro ‘PRINTFB’ 6022 | PRINTFB(G, FB_Executive, FB_Details) | ^~~~~~~ layer3/Executive.cpp:6014:46: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=] 6014 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__, | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 76 and 331 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:6013:7: note: in expansion of macro ‘PRINTFB’ 6013 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int)’: layer3/Executive.cpp:9495:53: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=] 9495 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 35 and 300 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9494:17: note: in expansion of macro ‘PRINTFB’ 9494 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp:9508:67: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=] 9508 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt, | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 314 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9507:17: note: in expansion of macro ‘PRINTFB’ 9507 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp:9520:59: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=] 9520 | " Unbond: %d bonds removed from model \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 41 and 306 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9519:17: note: in expansion of macro ‘PRINTFB’ 9519 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In function ‘void ExecutiveManageObject(PyMOLGlobals*, CObject*, int, int)’: layer3/Executive.cpp:14515:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] 14515 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 73 and 328 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:14514:7: note: in expansion of macro ‘PRINTFB’ 14514 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp:14510:36: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] 14510 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 61 and 316 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:14509:7: note: in expansion of macro ‘PRINTFB’ 14509 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveGroup(PyMOLGlobals*, const char*, const char*, int, int)’: layer3/Executive.cpp:2366:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] 2366 | " Executive: adding '%s' to group '%s'.\n", rec->name, rec->group_name | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 36 and 546 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:2365:17: note: in expansion of macro ‘PRINTFB’ 2365 | PRINTFB(G, FB_Executive, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In function ‘int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)’: layer3/Executive.cpp:5145:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=] 5145 | " Executive: skipping unrecognized object \"%s\" of type %d.\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 321 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5144:11: note: in expansion of macro ‘PRINTFB’ 5144 | PRINTFB(G, FB_Executive, FB_Errors) | ^~~~~~~ layer3/Executive.cpp:5170:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=] 5170 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G); | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 304 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5169:9: note: in expansion of macro ‘PRINTFB’ 5169 | PRINTFB(G, FB_Executive, FB_Errors) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.9 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-x86_64-3.9/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 layer3/Executive.cpp: In function ‘void ExecutiveSelectRect(PyMOLGlobals*, BlockRect*, int)’: layer3/Executive.cpp:7355:50: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=] 7355 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, | ^~ 7356 | buffer); | ~~~~~~ layer3/Executive.cpp:7355:20: note: ‘sprintf’ output 28 or more bytes (assuming 1051) into a destination of size 1024 7355 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 7356 | buffer); | ~~~~~~~ layer3/Executive.cpp:7341:50: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=] 7341 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, | ^~ 7342 | buffer); | ~~~~~~ layer3/Executive.cpp:7341:20: note: ‘sprintf’ output 28 or more bytes (assuming 1051) into a destination of size 1024 7341 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 7342 | buffer); | ~~~~~~~ layer3/Executive.cpp:7331:50: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=] 7331 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, | ^~ 7332 | buffer); | ~~~~~~ layer3/Executive.cpp:7331:20: note: ‘sprintf’ output 28 or more bytes (assuming 1051) into a destination of size 1024 7331 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 7332 | buffer); | ~~~~~~~ layer3/Executive.cpp:7323:50: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=] 7323 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, | ^~ 7324 | buffer); | ~~~~~~ layer3/Executive.cpp:7323:20: note: ‘sprintf’ output 28 or more bytes (assuming 1051) into a destination of size 1024 7323 | sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 7324 | buffer); | ~~~~~~~ layer3/Executive.cpp:7314:51: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1008 [-Wformat-overflow=] 7314 | sprintf(buf2, "%scmd.select(\"%s\",\"(%s)\",enable=1)\n", prefix, selName, | ^~ 7315 | buffer); | ~~~~~~ layer3/Executive.cpp:7314:20: note: ‘sprintf’ output 30 or more bytes (assuming 1053) into a destination of size 1024 7314 | sprintf(buf2, "%scmd.select(\"%s\",\"(%s)\",enable=1)\n", prefix, selName, | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 7315 | buffer); | ~~~~~~~ layer3/Executive.cpp: In function ‘void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)’: layer3/Executive.cpp:14181:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 238 [-Wformat-truncation=] 14181 | "new_name before: %s\n", new_name ENDFB(G); | ^~ ~~~~~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 19 and 1042 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:14180:19: note: in expansion of macro ‘PRINTFB’ 14180 | PRINTFB(G, FB_Executive, FB_Blather) | ^~~~~~~ layer3/Executive.cpp:14184:41: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 236 [-Wformat-truncation=] 14184 | "Making new object: %s from name=%s, a=%d, x=%d, y=%d, z=%d\n", | ^~ 14185 | new_name, name, (int)a, x, y, z ENDFB(G); | ~~~~~~~~ layer3/Executive.cpp:14184:21: note: using the range [-2147483648, 2147483647] for directive argument 14184 | "Making new object: %s from name=%s, a=%d, x=%d, y=%d, z=%d\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:14184:21: note: directive argument in the range [-1, 1] layer3/Executive.cpp:14184:21: note: directive argument in the range [-1, 1] layer3/Executive.cpp:14184:21: note: directive argument in the range [-1, 1] In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output 52 or more bytes (assuming 1078) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:14183:19: note: in expansion of macro ‘PRINTFB’ 14183 | PRINTFB(G, FB_Executive, FB_Blather) | ^~~~~~~ layer3/Executive.cpp: In member function ‘virtual int CExecutive::drag(int, int, int)’: layer3/Executive.cpp:15534:55: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 15534 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", | ^~ 15535 | order_input, (location == -2) ? "upper" : "current"); | ~~~~~~~~~~~ layer3/Executive.cpp:15534:26: note: ‘sprintf’ output between 32 and 1057 bytes into a destination of size 1024 15534 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 15535 | order_input, (location == -2) ? "upper" : "current"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSetName(PyMOLGlobals*, const char*, const char*)’: layer3/Executive.cpp:3623:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=] 3623 | " Warning: Invalid characters in '%s' have been replaced or stripped\n", | ^~ 3624 | name ENDFB(G); | ~~~~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 67 and 322 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:3622:5: note: in expansion of macro ‘PRINTFB’ 3622 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)’: layer3/Executive.cpp:9799:25: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] 9799 | " Executive: object %s created.\n", oDst->Name ENDFB(G); | ^~ In file included from layer1/Ortho.h:32, from layer3/Executive.h:30, from layer3/Executive.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9798:3: note: in expansion of macro ‘PRINTFB’ 9798 | PRINTFB(G, FB_Executive, FB_Actions) | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/generated/ShaderText.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o 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build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-x86_64-3.9/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o 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build/temp.linux-x86_64-3.9/layer2/CifFile.o build/temp.linux-x86_64-3.9/layer2/CifMoleculeReader.o build/temp.linux-x86_64-3.9/layer2/CoordSet.o build/temp.linux-x86_64-3.9/layer2/DistSet.o build/temp.linux-x86_64-3.9/layer2/GadgetSet.o build/temp.linux-x86_64-3.9/layer2/HydrogenAdder.o build/temp.linux-x86_64-3.9/layer2/MmodTyping.o build/temp.linux-x86_64-3.9/layer2/MmtfMoleculeReader.o build/temp.linux-x86_64-3.9/layer2/Mol2Typing.o build/temp.linux-x86_64-3.9/layer2/MolV3000.o build/temp.linux-x86_64-3.9/layer2/ObjectAlignment.o build/temp.linux-x86_64-3.9/layer2/ObjectCGO.o build/temp.linux-x86_64-3.9/layer2/ObjectCallback.o build/temp.linux-x86_64-3.9/layer2/ObjectDist.o build/temp.linux-x86_64-3.9/layer2/ObjectGadget.o build/temp.linux-x86_64-3.9/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-3.9/layer2/ObjectGroup.o build/temp.linux-x86_64-3.9/layer2/ObjectMap.o build/temp.linux-x86_64-3.9/layer2/ObjectMesh.o build/temp.linux-x86_64-3.9/layer2/ObjectMolecule.o build/temp.linux-x86_64-3.9/layer2/ObjectMolecule2.o build/temp.linux-x86_64-3.9/layer2/ObjectSlice.o build/temp.linux-x86_64-3.9/layer2/ObjectSurface.o build/temp.linux-x86_64-3.9/layer2/ObjectVolume.o build/temp.linux-x86_64-3.9/layer2/RepAngle.o build/temp.linux-x86_64-3.9/layer2/RepCartoon.o build/temp.linux-x86_64-3.9/layer2/RepCylBond.o build/temp.linux-x86_64-3.9/layer2/RepDihedral.o build/temp.linux-x86_64-3.9/layer2/RepDistDash.o build/temp.linux-x86_64-3.9/layer2/RepDistLabel.o build/temp.linux-x86_64-3.9/layer2/RepDot.o build/temp.linux-x86_64-3.9/layer2/RepEllipsoid.o build/temp.linux-x86_64-3.9/layer2/RepLabel.o build/temp.linux-x86_64-3.9/layer2/RepMesh.o build/temp.linux-x86_64-3.9/layer2/RepNonbonded.o build/temp.linux-x86_64-3.9/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-3.9/layer2/RepRibbon.o build/temp.linux-x86_64-3.9/layer2/RepSphere.o build/temp.linux-x86_64-3.9/layer2/RepSphereGenerate.o build/temp.linux-x86_64-3.9/layer2/RepSphereImmediate.o build/temp.linux-x86_64-3.9/layer2/RepSurface.o build/temp.linux-x86_64-3.9/layer2/RepWireBond.o build/temp.linux-x86_64-3.9/layer2/Sculpt.o build/temp.linux-x86_64-3.9/layer2/SculptCache.o build/temp.linux-x86_64-3.9/layer2/SideChainHelper.o build/temp.linux-x86_64-3.9/layer2/VFont.o build/temp.linux-x86_64-3.9/layer3/AtomIterators.o build/temp.linux-x86_64-3.9/layer3/CifDataValueFormatter.o build/temp.linux-x86_64-3.9/layer3/Editor.o build/temp.linux-x86_64-3.9/layer3/Executive.o build/temp.linux-x86_64-3.9/layer3/ExecutivePython.o build/temp.linux-x86_64-3.9/layer3/MaeExportHelpers.o build/temp.linux-x86_64-3.9/layer3/MoleculeExporter.o build/temp.linux-x86_64-3.9/layer3/MovieScene.o build/temp.linux-x86_64-3.9/layer3/PlugIOManager.o build/temp.linux-x86_64-3.9/layer3/RingFinder.o build/temp.linux-x86_64-3.9/layer3/Seeker.o build/temp.linux-x86_64-3.9/layer3/Selector.o build/temp.linux-x86_64-3.9/layer3/SelectorTmp.o build/temp.linux-x86_64-3.9/layer4/Cmd.o build/temp.linux-x86_64-3.9/layer4/Menu.o build/temp.linux-x86_64-3.9/layer4/PopUp.o build/temp.linux-x86_64-3.9/layer5/PyMOL.o build/temp.linux-x86_64-3.9/layer5/TestPyMOL.o build/temp.linux-x86_64-3.9/layer5/main.o build/temp.linux-x86_64-3.9/modules/cealign/src/ccealignmodule.o build/temp.linux-x86_64-3.9/ov/src/OVContext.o build/temp.linux-x86_64-3.9/ov/src/OVHeap.o build/temp.linux-x86_64-3.9/ov/src/OVHeapArray.o build/temp.linux-x86_64-3.9/ov/src/OVLexicon.o build/temp.linux-x86_64-3.9/ov/src/OVOneToAny.o build/temp.linux-x86_64-3.9/ov/src/OVOneToOne.o build/temp.linux-x86_64-3.9/ov/src/OVRandom.o build/temp.linux-x86_64-3.9/ov/src/ov_utility.o -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_cmd.cpython-39-x86_64-linux-gnu.so building 'chempy.champ._champ' extension creating build/temp.linux-x86_64-3.9/contrib/champ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/champ.c -o build/temp.linux-x86_64-3.9/contrib/champ/champ.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-x86_64-3.9/contrib/champ/champ_module.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/chiral.c -o build/temp.linux-x86_64-3.9/contrib/champ/chiral.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/err2.c -o build/temp.linux-x86_64-3.9/contrib/champ/err2.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/list.c -o build/temp.linux-x86_64-3.9/contrib/champ/list.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-x86_64-3.9/contrib/champ/feedback2.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-x86_64-3.9/contrib/champ/os_memory.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/strblock.c -o build/temp.linux-x86_64-3.9/contrib/champ/strblock.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/sort.c -o build/temp.linux-x86_64-3.9/contrib/champ/sort.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.9 -c -MMD contrib/champ/vla.c -o build/temp.linux-x86_64-3.9/contrib/champ/vla.o contrib/champ/os_memory.c: In function ‘OSMemoryZero’: contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 55 | while(count&&(((int)p)&mask)) { | ^ contrib/champ/os_memory.c: In function ‘OSMemoryHashAdd’: contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 137 | hash=(int)rec; | ^ contrib/champ/os_memory.c: In function ‘OSMemoryHashRemove’: contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 150 | hash=(int)rec; | ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/contrib/champ/champ.o build/temp.linux-x86_64-3.9/contrib/champ/champ_module.o build/temp.linux-x86_64-3.9/contrib/champ/chiral.o build/temp.linux-x86_64-3.9/contrib/champ/err2.o build/temp.linux-x86_64-3.9/contrib/champ/feedback2.o build/temp.linux-x86_64-3.9/contrib/champ/list.o build/temp.linux-x86_64-3.9/contrib/champ/os_memory.o build/temp.linux-x86_64-3.9/contrib/champ/sort.o build/temp.linux-x86_64-3.9/contrib/champ/strblock.o build/temp.linux-x86_64-3.9/contrib/champ/vla.o -o /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/_champ.cpython-39-x86_64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/pymol-ZnPFSl/pymol-2.4.0+dfsg' chmod +x test/pymol-test PYBUILD_SYSTEM="custom" \ PYBUILD_BEFORE_TEST="cp -r {dir}/test {build_dir}" \ PYBUILD_AFTER_TEST="rm -rf {build_dir}/test" \ PYBUILD_TEST_ARGS="cd {build_dir}/test; PYMOL_PATH={build_dir} python{version} run" \ dh_auto_test I: pybuild pybuild:284: cp -r /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/test /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build I: pybuild base:232: cd /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/test; PYMOL_PATH=/build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build python3.9 run run_tests: C0001quit... run_tests: C0001quit.log DIFFERS over about 1 lines. run_tests: C0010hello... run_tests: C0010hello.log DIFFERS over about 1 lines. run_tests: C0020pdb... run_tests: C0020pdb.pdb is missing. run_tests: C0020pdb.log DIFFERS over about 4 lines. run_tests: C0021pdbstr... run_tests: C0021pdbstr.log DIFFERS over about 3 lines. run_tests: C0025mol... run_tests: C0025mol.log DIFFERS over about 3 lines. run_tests: C0026sdf... run_tests: C0026sdf.log DIFFERS over about 17 lines. run_tests: C0027mol2... run_tests: C0027mol2.log DIFFERS over about 36 lines. run_tests: C0030pkl... run_tests: C0030pkl.log DIFFERS over about 4 lines. run_tests: C0030pkl.pdb is missing. run_tests: C0050multi... run_tests: C0050multi.log DIFFERS over about 4 lines. run_tests: C0060delete... run_tests: C0060delete.log DIFFERS over about 19 lines. run_tests: C0070rep... run_tests: C0070rep.log DIFFERS over about 9 lines. run_tests: C0080create... run_tests: C0080create.2.pdb is missing. run_tests: C0080create.1.pdb is missing. run_tests: C0080create.log DIFFERS over about 61 lines. run_tests: C0100select... run_tests: C0100select.log DIFFERS over about 90 lines. run_tests: C0105names... run_tests: C0105names.log DIFFERS over about 27 lines. run_tests: C0106order... run_tests: C0106order.log DIFFERS over about 49 lines. run_tests: C0140iterate... run_tests: C0140iterate.log DIFFERS over about 23 lines. run_tests: C0150alter... run_tests: C0150alter.1.pdb is missing. run_tests: C0150alter.log DIFFERS over about 11 lines. run_tests: C0160get... run_tests: C0160get.log DIFFERS over about 42 lines. run_tests: C0170scene... run_tests: C0170scene.log DIFFERS over about 125 lines. run_tests: C0180embed... run_tests: C0180embed.log DIFFERS over about 45 lines. run_tests: C0181embed... run_tests: C0181embed.log DIFFERS over about 10 lines. run_tests: C0200feedback... run_tests: C0200feedback.log DIFFERS over about 127 lines. run_tests: C0201extend... run_tests: C0201extend.log DIFFERS over about 11 lines. run_tests: C0202help_python... run_tests: C0202help_python.log DIFFERS over about 50 lines. run_tests: C0300session... run_tests: C0300session.log DIFFERS over about 14 lines. run_tests: C0500misc... run_tests: C0500misc.log DIFFERS over about 130 lines. run_tests: C0550pseudo... run_tests: C0550pseudo.log DIFFERS over about 36 lines. run_tests: C0600util... run_tests: C0600util.log DIFFERS over about 27 lines. run_tests: C0700odd... run_tests: C0700odd.D.pdb is missing. run_tests: C0700odd.E.pdb is missing. run_tests: C0700odd.log DIFFERS over about 204 lines. run_tests: C0700odd.A.pdb is missing. run_tests: C0700odd.4.pdb is missing. run_tests: C0700odd.8.pdb is missing. run_tests: C0700odd.3.pdb is missing. run_tests: C0700odd.1.pdb is missing. run_tests: C0700odd.B.pdb is missing. run_tests: C0700odd.F.pdb is missing. run_tests: C0700odd.C.pdb is missing. run_tests: C0700odd.5.pdb is missing. run_tests: C0700odd.9.pdb is missing. run_tests: C0700odd.2.pdb is missing. run_tests: C0700odd.6.pdb is missing. run_tests: C0700odd.7.pdb is missing. run_tests: C0740multipdb... run_tests: C0740multipdb.log DIFFERS over about 45 lines. run_tests: C0800matrices... run_tests: C0800matrices.log DIFFERS over about 141 lines. run_tests: C1000viewing... run_tests: C1000viewing.log DIFFERS over about 264 lines. run_tests: C1010helping... run_tests: C1010helping.log DIFFERS over about 27 lines. run_tests: C1020querying... run_tests: C1020querying.log DIFFERS over about 123 lines. run_tests: C1030selecting... run_tests: C1030selecting.log DIFFERS over about 63 lines. run_tests: C1035wildcards... run_tests: C1035wildcards.log DIFFERS over about 53 lines. run_tests: C1040editing... run_tests: C1040editing.log DIFFERS over about 260 lines. run_tests: C1050fitting... run_tests: C1050fitting.log DIFFERS over about 77 lines. run_tests: C1060controlling... run_tests: C1060controlling.log DIFFERS over about 7 lines. run_tests: C1070exporting... run_tests: C1070exporting.log DIFFERS over about 27 lines. run_tests: C1080isomore... run_tests: C1080isomore.log DIFFERS over about 142 lines. run_tests: C1090coulomb... run_tests: C1090coulomb.log DIFFERS over about 23 lines. run_tests: C1095slice... run_tests: C1095slice.log DIFFERS over about 33 lines. run_tests: C1100do... run_tests: C1100do.log DIFFERS over about 40 lines. run_tests: C1110matrix_mode... run_tests: C1110matrix_mode.log DIFFERS over about 127 lines. run_tests: C1200matrix_maps... run_tests: C1200matrix_maps.log DIFFERS over about 60 lines. run_tests: C1300extras... run_tests: C1300extras.log DIFFERS over about 38 lines. run_tests: C2000returns... run_tests: C2000returns.log DIFFERS over about 121 lines. I: pybuild pybuild:310: rm -rf /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/test make[1]: Leaving directory '/build/pymol-ZnPFSl/pymol-2.4.0+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-indep dh binary-indep --with python3 --buildsystem pybuild dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild dh_installdirs -i -O--buildsystem=pybuild dh_auto_install -i -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol running install running build running build_py running build_ext running install_lib creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9 creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2 copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2 copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol2/cmd2.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2 creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/parsing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/creating.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/installation.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/legacysupport.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/managergui_qt.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/managergui.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/plugins/repository.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/moving.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/fitting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/invocation.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/benchmark.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/security.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/appearance.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/command.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/nucmutagenesis.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/pseudoatom.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/filter.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/annotation.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/demo.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/fedora.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/sculpting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/density.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/label.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/measurement.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/dragging.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/stereodemo.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/box.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/charge.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/openvr.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/cleanup.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/renaming.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/message.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/mutagenesis.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/pair_fit.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/toggle.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizard/distance.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_gui.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/controlling.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/parser.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/experimenting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/xwin.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/checking.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/contrib copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/contrib/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/contrib copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/cmd.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/shortcut.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/pymolhttpd.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/internal.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/morphing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/cgo.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/preset.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/editing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/gui.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/util.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/colorprinting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/helping.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/menu.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/xray.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/keyboard.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/api.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/__main__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/colorramping.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/feedingback.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/completing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/selector.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/commanding.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/stereochemistry/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/constants.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/headering.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/_cmd.cpython-39-x86_64-linux-gnu.so -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/selecting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/lazyio.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/importing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/externing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/Qt/utils.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/seqalign.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/diagnosing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/computing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/editor.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/keywords.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/locking.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/exporting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/callback.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/setting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/wizarding.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/rpc.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glut copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glut/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glut copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/gl copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/gl/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/gl creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glu copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/opengl/glu/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glu copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/vfont.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/monitoring.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/constants_palette.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/movie.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/querying.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/povray.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pymol/viewing.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/hetatm.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/sdf.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_amber.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/pkl.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mass.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/amber.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/state.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/keyword.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/tinker/realtime.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bond_mmff.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mol2.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mae.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/pdb.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/water_residues.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/gamess1.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/place.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fast/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cc1.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bond_amber.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mol.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/fragments/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/formal_charges.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/amber99.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/_champ.cpython-39-x86_64-linux-gnu.so -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/champ/assign.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cpv.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/models.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/solvate.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/io.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/gms.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/brick.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/map.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_mmff.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/arc.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/water_amber.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmd.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/charge.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/state.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/util.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/commands.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bmin/realtime.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/lst.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_residues.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/protein_amber99.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/xyz.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/cif.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/neighbor.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/mmtf/io.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/bonds.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/chempy/dictdb.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/ColorEditor.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/PMGApp.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/volume.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/TextEditor.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/Demo.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/Setting.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/builder.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/SetEditor.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_tk/startup/apbs_tools.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/mimic_tk.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/file_dialogs.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/builder.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/properties_dialog.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/volume.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/TextEditor.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/keymapping.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/python.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/syntax/pml.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_map.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_aln.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/colors.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/__init__.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_mae.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/pluginmanager.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/load_traj.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/save_object.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/askpartial.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/render.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/props.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/movieexport.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/save_molecule.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/png.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/forms/fetch.ui -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms copying /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/.pybuild/cpython3_3.9_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol2/cmd2.py to cmd2.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/parsing.py to parsing.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/creating.py to creating.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/installation.py to installation.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/managergui.py to managergui.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/plugins/repository.py to repository.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/moving.py to moving.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/fitting.py to fitting.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/invocation.py to invocation.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/benchmark.py to benchmark.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/security.py to security.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/appearance.py to appearance.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/command.py to command.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/filter.py to filter.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/annotation.py to annotation.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/demo.py to demo.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/fedora.py to fedora.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/sculpting.py to sculpting.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/density.py to density.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/label.py to label.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/measurement.py to measurement.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/dragging.py to dragging.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/box.py to box.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/charge.py to charge.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/openvr.py to openvr.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/cleanup.py to cleanup.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/renaming.py to renaming.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/message.py to message.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/toggle.py to toggle.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizard/distance.py to distance.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/_gui.py to _gui.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/controlling.py to controlling.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/parser.py to parser.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/experimenting.py to experimenting.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/xwin.py to xwin.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/checking.py to checking.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/contrib/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/cmd.py to cmd.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/shortcut.py to shortcut.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/internal.py to internal.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/morphing.py to morphing.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/cgo.py to cgo.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/preset.py to preset.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/editing.py to editing.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/gui.py to gui.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/util.py to util.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/colorprinting.py to colorprinting.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/helping.py to helping.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/menu.py to menu.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/xray.py to xray.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/keyboard.py to keyboard.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/api.py to api.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/__main__.py to __main__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/colorramping.py to colorramping.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/feedingback.py to feedingback.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/completing.py to completing.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/selector.py to selector.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/commanding.py to commanding.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/constants.py to constants.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/headering.py to headering.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/selecting.py to selecting.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/lazyio.py to lazyio.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/importing.py to importing.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/externing.py to externing.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/Qt/utils.py to utils.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/seqalign.py to seqalign.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/diagnosing.py to diagnosing.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/computing.py to computing.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/editor.py to editor.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/keywords.py to keywords.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/locking.py to locking.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/exporting.py to exporting.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/callback.py to callback.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/setting.py to setting.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/wizarding.py to wizarding.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/rpc.py to rpc.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glut/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/gl/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/opengl/glu/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/vfont.py to vfont.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/monitoring.py to monitoring.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/constants_palette.py to constants_palette.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/movie.py to movie.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/querying.py to querying.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/povray.py to povray.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol/viewing.py to viewing.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/hetatm.py to hetatm.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/sdf.py to sdf.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_amber.py to protein_amber.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/pkl.py to pkl.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mass.py to mass.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/amber.py to amber.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/state.py to state.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/keyword.py to keyword.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/tinker/realtime.py to realtime.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mol2.py to mol2.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mae.py to mae.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/pdb.py to pdb.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/water_residues.py to water_residues.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/gamess1.py to gamess1.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/place.py to place.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fast/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cc1.py to cc1.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bond_amber.py to bond_amber.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mol.py to mol.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/fragments/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/formal_charges.py to formal_charges.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/amber99.py to amber99.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/champ/assign.py to assign.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cpv.py to cpv.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/models.py to models.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/solvate.py to solvate.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/io.py to io.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/gms.py to gms.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/brick.py to brick.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/map.py to map.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein.py to protein.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/arc.py to arc.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/water_amber.py to water_amber.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmd.py to mmd.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/charge.py to charge.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/state.py to state.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/util.py to util.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/commands.py to commands.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bmin/realtime.py to realtime.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/lst.py to lst.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_residues.py to protein_residues.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/xyz.py to xyz.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/cif.py to cif.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/neighbor.py to neighbor.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/mmtf/io.py to io.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/bonds.py to bonds.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/chempy/dictdb.py to dictdb.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/PMGApp.py to PMGApp.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/volume.py to volume.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/TextEditor.py to TextEditor.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/Demo.py to Demo.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/Setting.py to Setting.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/builder.py to builder.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/SetEditor.py to SetEditor.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/builder.py to builder.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/volume.py to volume.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/TextEditor.py to TextEditor.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/python.py to python.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-39.pyc running install_egg_info Writing /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/lib/python3.9/dist-packages/pymol-2.4.0.egg-info creating /build/pymol-ZnPFSl/pymol-2.4.0+dfsg/debian/python3-pymol/usr/bin debian/rules override_dh_install-indep make[1]: Entering directory '/build/pymol-ZnPFSl/pymol-2.4.0+dfsg' sed -e s/@PYTHON_VERSION@/3/g < debian/pymol.launch.in > debian/pymol.launch pdflatex -output-directory debian -jobname pymol-ref-card debian/pymolRef.tex This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./debian/pymolRef.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file pymol-ref-card.aux. Underfull \hbox (badness 10000) in paragraph at lines 78--79 [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (debian/pymol-ref-card.aux) kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm0900 mkdir: cannot create directory ‘././nonexistent’: Permission denied mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm0900 This is METAFONT, Version 2.7182818 (TeX Live 2020/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm0900.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf Ok [100] [109] [98] [99] [108]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] [45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf Ok [185] [178] [179] [170] [186]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf Ok [188] [189] [190]) ) ) ) (some charht values had to be adjusted by as much as 0.06744pt) Font metrics written on tcrm0900.tfm. Output written on tcrm0900.600gf (128 characters, 21392 bytes). Transcript written on tcrm0900.log. mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/tcrm0900.600pk: successfully generated. ) (see the transcript file for additional information) Output written on debian/pymol-ref-card.pdf (2 pages, 101759 bytes). Transcript written on debian/pymol-ref-card.log. dh_install install -m 755 debian/pymol.launch debian/pymol/usr/bin/pymol make[1]: Leaving directory '/build/pymol-ZnPFSl/pymol-2.4.0+dfsg' dh_installdocs -i -O--buildsystem=pybuild dh_installchangelogs -i -O--buildsystem=pybuild dh_installexamples -i -O--buildsystem=pybuild dh_installman -i -O--buildsystem=pybuild dh_python3 -i -O--buildsystem=pybuild dh_installinit -i -O--buildsystem=pybuild dh_installsystemduser -i -O--buildsystem=pybuild dh_installmime -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/pymol-ZnPFSl/pymol-2.4.0+dfsg' dh_compress -Xpdb make[1]: Leaving directory '/build/pymol-ZnPFSl/pymol-2.4.0+dfsg' dh_fixperms -i -O--buildsystem=pybuild dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package pymol: substitution variable ${python3:Depends} used, but is not defined dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'pymol' in '../pymol_2.4.0+dfsg-2_all.deb'. dpkg-deb: building package 'pymol-data' in '../pymol-data_2.4.0+dfsg-2_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../pymol_2.4.0+dfsg-2_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/pymol-ZnPFSl /tmp/pymol-2.4.0+dfsg-24jwuynts I: cleaning package lists and apt cache... W: deleting files in /tmp: texfonts I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.T6JIbh2B9I... I: success in 2054.0579 seconds md5: pymol-data_2.4.0+dfsg-2_all.deb: OK md5: pymol_2.4.0+dfsg-2_all.deb: OK sha1: pymol-data_2.4.0+dfsg-2_all.deb: OK sha1: pymol_2.4.0+dfsg-2_all.deb: OK sha256: pymol-data_2.4.0+dfsg-2_all.deb: OK sha256: pymol_2.4.0+dfsg-2_all.deb: OK Checksums: OK