Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/pyensembl/pyensembl_2.0.0+ds-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/pyensembl-2.0.0+ds-1dno6v8wr/pyensembl_2.0.0+ds-1_all.buildinfo Get source package info: pyensembl=2.0.0+ds-1 Source URL: http://snapshot.notset.fr/mr/package/pyensembl/2.0.0+ds-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.38-3 binutils-common=2.38-3 binutils-x86-64-linux-gnu=2.38-3 bsdextrautils=2.38-4 bsdutils=1:2.38-4 build-essential=12.9 bzip2=1.0.8-5 ca-certificates=20211016 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.3.0-1 dash=0.5.11+git20210903+057cd650a4ed-8 debconf=1.5.79 debhelper=13.7.1 debianutils=5.7-0.2 dh-autoreconf=20 dh-python=5.20220403 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.7 dpkg-dev=1.21.7 dwz=0.14-1 file=1:5.41-4 findutils=4.9.0-3 g++=4:11.2.0-2 g++-11=11.3.0-1 gcc=4:11.2.0-2 gcc-11=11.3.0-1 gcc-11-base=11.3.0-1 gcc-12-base=12-20220428-1 gettext=0.21-6 gettext-base=0.21-6 grep=3.7-1 groff-base=1.22.4-8 gzip=1.12-1 hostname=3.23 init-system-helpers=1.62 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.3.0-1 libatomic1=12-20220428-1 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libbinutils=2.38-3 libblas3=3.10.1-1 libblkid1=2.38-4 libbz2-1.0=1.0.8-5 libc-bin=2.33-7 libc-dev-bin=2.33-7 libc6=2.33-7 libc6-dev=2.33-7 libcap-ng0=0.7.9-2.2+b2 libcap2=1:2.44-1 libcc1-0=12-20220428-1 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.38-3 libctf0=2.38-3 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.262 libdebhelper-perl=13.7.1 libdpkg-perl=1.21.7 libelf1=0.186-1 libexpat1=2.4.8-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.3.0-1 libgcc-s1=12-20220428-1 libgcrypt20=1.10.1-2 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgfortran5=12-20220428-1 libgmp10=2:6.2.1+dfsg-3 libgomp1=12-20220428-1 libgpg-error0=1.45-2 libgssapi-krb5-2=1.19.2-2+b1 libicu71=71.1-2 libisl23=0.24-2 libitm1=12-20220428-1 libk5crypto3=1.19.2-2+b1 libkeyutils1=1.6.1-3 libkrb5-3=1.19.2-2+b1 libkrb5support0=1.19.2-2+b1 liblapack3=3.10.1-1 liblsan0=12-20220428-1 liblz4-1=1.9.3-2 liblzma5=5.2.5-2.1 libmagic-mgc=1:5.41-4 libmagic1=1:5.41-4 libmount1=2.38-4 libmpc3=1.2.1-2 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.3+20220423-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-13 libpam-modules-bin=1.4.0-13 libpam-runtime=1.4.0-13 libpam0g=1.4.0-13 libpcre2-8-0=10.40-1 libpcre3=2:8.39-14 libperl5.34=5.34.0-4 libpipeline1=1.5.6-1 libpython3-stdlib=3.10.4-1+b1 libpython3.10-minimal=3.10.4-3 libpython3.10-stdlib=3.10.4-3 libpython3.9-minimal=3.9.12-1 libpython3.9-stdlib=3.9.12-1 libquadmath0=12-20220428-1 libreadline8=8.1.2-1.2 libseccomp2=2.5.4-1 libselinux1=3.3-1+b2 libsigsegv2=2.14-1 libsmartcols1=2.38-4 libsqlite3-0=3.38.3-1 libssl1.1=1.1.1n-1 libstdc++-11-dev=11.3.0-1 libstdc++6=12-20220428-1 libsub-override-perl=0.09-2 libsystemd0=250.4-1 libtinfo6=6.3+20220423-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.7-3 libtsan0=11.3.0-1 libubsan1=12-20220428-1 libuchardet0=0.0.7-1 libudev1=250.4-1 libunistring2=1.0-1 libuuid1=2.38-4 libxml2=2.9.13+dfsg-1+b1 libzstd1=1.5.2+dfsg-1 linux-libc-dev=5.17.3-1 login=1:4.11.1+dfsg1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3+b1 media-types=7.1.0 ncurses-base=6.3+20220423-1 ncurses-bin=6.3+20220423-1 openssl=1.1.1n-1 patch=2.7.6-7 perl=5.34.0-4 perl-base=5.34.0-4 perl-modules-5.34=5.34.0-4 po-debconf=1.0.21+nmu1 python3=3.10.4-1+b1 python3-all=3.10.4-1+b1 python3-appdirs=1.4.4-2 python3-certifi=2020.6.20-1 python3-chardet=4.0.0-2 python3-charset-normalizer=2.0.6-2 python3-datacache=1.1.5-2 python3-dateutil=2.8.1-6 python3-distutils=3.9.12-1 python3-gtfparse=1.2.1+ds-2 python3-idna=3.3-1 python3-lib2to3=3.9.12-1 python3-memoized-property=1.0.3-2 python3-minimal=3.10.4-1+b1 python3-mock=4.0.3-3 python3-numpy=1:1.21.5-1 python3-pandas=1.3.5+dfsg-4 python3-pandas-lib=1.3.5+dfsg-4 python3-pbr=5.8.1-2 python3-pkg-resources=59.6.0-1.2 python3-requests=2.27.1+dfsg-1 python3-serializable=0.2.1+ds-2 python3-setuptools=59.6.0-1.2 python3-simplejson=3.17.6-1 python3-six=1.16.0-3 python3-typechecks=0.1.0+ds-3 python3-tz=2022.1-1 python3-urllib3=1.26.9-1 python3.10=3.10.4-3 python3.10-minimal=3.10.4-3 python3.9=3.9.12-1 python3.9-minimal=3.9.12-1 readline-common=8.1.2-1.2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.03-1 tar=1.34+dfsg-1 tzdata=2022a-1 util-linux=2.38-4 util-linux-extra=2.38-4 xz-utils=5.2.5-2.1 zlib1g=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220508T025227Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220508T025227Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220627T213404Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220501T215056Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d pyensembl=2.0.0+ds-1 && mkdir -p /build/pyensembl-QQkTdJ && dpkg-source --no-check -x /*.dsc /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds && chown -R builduser:builduser /build/pyensembl-QQkTdJ" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1651520338" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/pyensembl-QQkTdJ /tmp/pyensembl-2.0.0+ds-1dno6v8wr bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.3FGAUD8svD as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.3FGAUD8svD Reading package lists... Building dependency tree... util-linux is already the newest version (2.38-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable/main amd64 libfakeroot amd64 1.28-1 [48.2 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable/main amd64 fakeroot amd64 1.28-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (1043 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4627 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.28-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.28-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.28-1_amd64.deb ... Unpacking fakeroot (1.28-1) ... Setting up libfakeroot:amd64 (1.28-1) ... Setting up fakeroot (1.28-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220508T025227Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220508T025227Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220627T213404Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220501T215056Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.3FGAUD8svD Get:1 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm InRelease [130 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220627T213404Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main Sources [11.9 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main amd64 Packages [11.4 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220627T213404Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220627T213404Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220627T213404Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220627T213404Z unstable/main amd64 Packages [12.5 MB] Fetched 36.1 MB in 30s (1204 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.3FGAUD8svD I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d pyensembl=2.0.0+ds-1 && mkdir -p /build/pyensembl-QQkTdJ && dpkg-source --no-check -x /*.dsc /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds && chown -R builduser:builduser /build/pyensembl-QQkTdJ"' exec /tmp/mmdebstrap.3FGAUD8svD Reading package lists... NOTICE: 'pyensembl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pyensembl.git Please use: git clone https://salsa.debian.org/med-team/pyensembl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 53.1 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main pyensembl 2.0.0+ds-1 (dsc) [2288 B] Get:2 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main pyensembl 2.0.0+ds-1 (tar) [47.1 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main pyensembl 2.0.0+ds-1 (diff) [3744 B] Fetched 53.1 kB in 0s (1003 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'pyensembl_2.0.0+ds-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting pyensembl in /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds dpkg-source: info: unpacking pyensembl_2.0.0+ds.orig.tar.xz dpkg-source: info: unpacking pyensembl_2.0.0+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying do-no-require-tinytimer.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1651520338" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.3FGAUD8svD dpkg-buildpackage: info: source package pyensembl dpkg-buildpackage: info: source version 2.0.0+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-source: info: using options from pyensembl-2.0.0+ds/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds' dh_auto_clean install -d /build/pyensembl-QQkTdJ/pyensembl-2.0.0\+ds/debian/.debhelper/generated/_source/home pybuild --clean -i python{version} -p "3.9 3.10" I: pybuild base:239: python3.9 setup.py clean running clean removing '/build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it I: pybuild base:239: python3.10 setup.py clean running clean removing '/build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; rm -f pyensembl.egg-info/SOURCES.txt pyensembl.egg-info/requires.txt make[1]: Leaving directory '/build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pyensembl.substvars debian/files rm -fr -- debian/pyensembl/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-indep dh binary-indep --with python3 --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild install -d /build/pyensembl-QQkTdJ/pyensembl-2.0.0\+ds/debian/.debhelper/generated/_source/home pybuild --configure -i python{version} -p "3.9 3.10" I: pybuild base:239: python3.9 setup.py config running config I: pybuild base:239: python3.10 setup.py config running config dh_auto_build -i -O--buildsystem=pybuild pybuild --build -i python{version} -p "3.9 3.10" I: pybuild base:239: /usr/bin/python3.9 setup.py build running build running build_py creating /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/__init__.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/common.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/database.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/download_cache.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/ensembl_release.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/ensembl_release_versions.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/ensembl_url_templates.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/exon.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/fasta.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/gene.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/genome.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/locus.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/locus_with_genome.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/memory_cache.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/normalization.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/reference_name.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/search.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/sequence_data.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/shell.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/species.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/transcript.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/version.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl copying pyensembl/logging.conf -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl I: pybuild base:239: /usr/bin/python3 setup.py build running build running build_py creating /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/__init__.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/common.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/database.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/download_cache.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/ensembl_release.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/ensembl_release_versions.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/ensembl_url_templates.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/exon.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/fasta.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/gene.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/genome.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/locus.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/locus_with_genome.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/memory_cache.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/normalization.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/reference_name.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/search.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/sequence_data.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/shell.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/species.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/transcript.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/version.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl copying pyensembl/logging.conf -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl dh: command-omitted: The call to "dh_auto_test -i -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild rm -f -- debian/pyensembl.substvars rm -fr -- debian/.debhelper/generated/pyensembl/ debian/pyensembl/ debian/tmp/ dh_auto_install --destdir=debian/pyensembl/ -i -O--buildsystem=pybuild install -d /build/pyensembl-QQkTdJ/pyensembl-2.0.0\+ds/debian/pyensembl pybuild --install -i python{version} -p "3.9 3.10" --dest-dir /build/pyensembl-QQkTdJ/pyensembl-2.0.0\+ds/debian/pyensembl I: pybuild base:239: /usr/bin/python3.9 setup.py install --root /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr creating /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib creating /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9 creating /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages creating /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/__init__.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/common.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/database.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/download_cache.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/ensembl_release.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/ensembl_release_versions.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/ensembl_url_templates.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/exon.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/fasta.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/gene.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/genome.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/locus.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/locus_with_genome.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/memory_cache.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/normalization.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/reference_name.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/search.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/sequence_data.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/shell.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/species.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/transcript.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/version.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.9_pyensembl/build/pyensembl/logging.conf -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/common.py to common.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/database.py to database.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/download_cache.py to download_cache.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/ensembl_release.py to ensembl_release.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/ensembl_release_versions.py to ensembl_release_versions.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/ensembl_url_templates.py to ensembl_url_templates.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/exon.py to exon.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/fasta.py to fasta.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/gene.py to gene.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/genome.py to genome.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/locus.py to locus.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/locus_with_genome.py to locus_with_genome.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/memory_cache.py to memory_cache.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/normalization.py to normalization.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/reference_name.py to reference_name.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/search.py to search.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/sequence_data.py to sequence_data.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/shell.py to shell.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/species.py to species.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/transcript.py to transcript.cpython-39.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl/version.py to version.cpython-39.pyc running install_egg_info running egg_info writing pyensembl.egg-info/PKG-INFO writing dependency_links to pyensembl.egg-info/dependency_links.txt writing entry points to pyensembl.egg-info/entry_points.txt writing requirements to pyensembl.egg-info/requires.txt writing top-level names to pyensembl.egg-info/top_level.txt writing manifest file 'pyensembl.egg-info/SOURCES.txt' reading manifest file 'pyensembl.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyensembl.egg-info/SOURCES.txt' Copying pyensembl.egg-info to /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.9/dist-packages/pyensembl-2.0.0.egg-info Skipping SOURCES.txt running install_scripts Installing pyensembl script to /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/bin I: pybuild base:239: /usr/bin/python3 setup.py install --root /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10 creating /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages creating /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/__init__.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/common.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/database.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/download_cache.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/ensembl_release.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/ensembl_release_versions.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/ensembl_url_templates.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/exon.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/fasta.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/gene.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/genome.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/locus.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/locus_with_genome.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/memory_cache.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/normalization.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/reference_name.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/search.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/sequence_data.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/shell.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/species.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/transcript.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/version.py -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl copying /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/.pybuild/cpython3_3.10_pyensembl/build/pyensembl/logging.conf -> /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/__init__.py to __init__.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/common.py to common.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/database.py to database.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/download_cache.py to download_cache.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/ensembl_release.py to ensembl_release.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/ensembl_release_versions.py to ensembl_release_versions.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/ensembl_url_templates.py to ensembl_url_templates.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/exon.py to exon.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/fasta.py to fasta.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/gene.py to gene.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/genome.py to genome.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/locus.py to locus.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/locus_with_genome.py to locus_with_genome.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/memory_cache.py to memory_cache.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/normalization.py to normalization.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/reference_name.py to reference_name.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/search.py to search.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/sequence_data.py to sequence_data.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/shell.py to shell.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/species.py to species.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/transcript.py to transcript.cpython-310.pyc byte-compiling /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl/version.py to version.cpython-310.pyc running install_egg_info running egg_info writing pyensembl.egg-info/PKG-INFO writing dependency_links to pyensembl.egg-info/dependency_links.txt writing entry points to pyensembl.egg-info/entry_points.txt writing requirements to pyensembl.egg-info/requires.txt writing top-level names to pyensembl.egg-info/top_level.txt reading manifest file 'pyensembl.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyensembl.egg-info/SOURCES.txt' Copying pyensembl.egg-info to /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/lib/python3.10/dist-packages/pyensembl-2.0.0.egg-info Skipping SOURCES.txt running install_scripts Installing pyensembl script to /build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds/debian/pyensembl/usr/bin dh_installdocs -i -O--buildsystem=pybuild install -d debian/pyensembl/usr/share/doc/pyensembl install -d debian/.debhelper/generated/pyensembl install -p -m0644 debian/copyright debian/pyensembl/usr/share/doc/pyensembl/copyright dh_installchangelogs -i -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/pyensembl/usr/share/doc/pyensembl/changelog.Debian dh_installman -i -O--buildsystem=pybuild install -d debian/pyensembl/usr/share/man/man1/ install -p -m0644 ./debian/pyensembl.1 debian/pyensembl/usr/share/man/man1/pyensembl.1 man-recode --to-code UTF-8 --suffix .dh-new debian/pyensembl/usr/share/man/man1/pyensembl.1 mv debian/pyensembl/usr/share/man/man1/pyensembl.1.dh-new debian/pyensembl/usr/share/man/man1/pyensembl.1 chmod 0644 -- debian/pyensembl/usr/share/man/man1/pyensembl.1 dh_python3 -i -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 5.20220403 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-i', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': False, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9,3.10 (default=3.10) D: dh_python3 debhelper:169: source=pyensembl, binary packages=['pyensembl'] D: dh_python3 dh_python3:183: processing package pyensembl... D: dh_python3 fs:52: moving files from debian/pyensembl/usr/lib/python3.9/dist-packages to debian/pyensembl/usr/lib/python3/dist-packages/ D: dh_python3 fs:52: moving files from debian/pyensembl/usr/lib/python3.10/dist-packages to debian/pyensembl/usr/lib/python3/dist-packages/ D: dh_python3 fs:399: package pyensembl details = {'requires.txt': {'debian/pyensembl/usr/lib/python3/dist-packages/pyensembl-2.0.0.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package pyensembl D: dh_python3 pydist:172: trying to find dependency for datacache>=1.1.4 (python=None) D: dh_python3 pydist:172: trying to find dependency for gtfparse>=1.1.0 (python=None) D: dh_python3 pydist:172: trying to find dependency for memoized-property>=1.0.2 (python=None) D: dh_python3 pydist:172: trying to find dependency for pandas>=0.15 (python=None) D: dh_python3 pydist:172: trying to find dependency for serializable (python=None) D: dh_python3 pydist:172: trying to find dependency for typechecks>=0.0.2 (python=None) D: dh_python3 depends:281: D={'python3-gtfparse', 'python3-pandas', 'python3-serializable', 'python3-typechecks', 'python3-datacache', 'python3:any', 'python3-memoized-property'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild cd debian/pyensembl chmod a-x usr/share/doc/pyensembl/changelog.Debian usr/share/man/man1/pyensembl.1 gzip -9nf usr/share/doc/pyensembl/changelog.Debian usr/share/man/man1/pyensembl.1 cd '/build/pyensembl-QQkTdJ/pyensembl-2.0.0+ds' dh_fixperms -i -O--buildsystem=pybuild find debian/pyensembl ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/pyensembl/usr/share/doc -type f -a -true -a ! -regex 'debian/pyensembl/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pyensembl/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/pyensembl/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pyensembl -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pyensembl/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/pyensembl/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild install -d debian/pyensembl/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/pyensembl/DEBIAN/postinst cat debian/pyensembl.postinst.debhelper >> debian/pyensembl/DEBIAN/postinst chmod 0755 -- debian/pyensembl/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/pyensembl/DEBIAN/prerm cat debian/pyensembl.prerm.debhelper >> debian/pyensembl/DEBIAN/prerm chmod 0755 -- debian/pyensembl/DEBIAN/prerm dh_gencontrol -i -O--buildsystem=pybuild echo misc:Depends= >> debian/pyensembl.substvars echo misc:Pre-Depends= >> debian/pyensembl.substvars dpkg-gencontrol -ppyensembl -ldebian/changelog -Tdebian/pyensembl.substvars -Pdebian/pyensembl chmod 0644 -- debian/pyensembl/DEBIAN/control dh_md5sums -i -O--buildsystem=pybuild cd debian/pyensembl >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/pyensembl/DEBIAN/md5sums dh_builddeb -i -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/pyensembl .. dpkg-deb: building package 'pyensembl' in '../pyensembl_2.0.0+ds-1_all.deb'. dpkg-genbuildinfo --build=all -O../pyensembl_2.0.0+ds-1_all.buildinfo dpkg-genchanges --build=all -O../pyensembl_2.0.0+ds-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-source: info: using options from pyensembl-2.0.0+ds/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/pyensembl-QQkTdJ /tmp/pyensembl-2.0.0+ds-1dno6v8wr I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.3FGAUD8svD... I: success in 416.3837 seconds md5: pyensembl_2.0.0+ds-1_all.deb: OK sha1: pyensembl_2.0.0+ds-1_all.deb: OK sha256: pyensembl_2.0.0+ds-1_all.deb: OK Checksums: OK