Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/pychopper/pychopper_2.5.0-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/pychopper-2.5.0-1l7ytr2pd/pychopper_2.5.0-1_all.buildinfo Get source package info: pychopper=2.5.0-1 Source URL: http://snapshot.notset.fr/mr/package/pychopper/2.5.0-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-4 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc1-2 binutils=2.35.1-2 binutils-common=2.35.1-2 binutils-x86-64-linux-gnu=2.35.1-2 blt=2.5.3+dfsg-4+b1 bsdextrautils=2.36-3+b1 bsdutils=1:2.36-3+b1 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-15 dash=0.5.10.2-7 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 dh-autoreconf=19 dh-python=4.20200925 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 docutils-common=0.16+dfsg-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 file=1:5.38-5 findutils=4.7.0-1 fontconfig-config=2.13.1-4.2 fonts-font-awesome=5.0.10+really4.7.0~dfsg-2 fonts-lato=2.0-2 fonts-lyx=2.3.5.2-1 g++=4:10.2.0-1 g++-10=10.2.0-15 gcc=4:10.2.0-1 gcc-10=10.2.0-15 gcc-10-base=10.2.0-15 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.4-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.58 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libasan6=10.2.0-15 libatomic1=10.2.0-15 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-2 libblas3=3.9.0-3 libblkid1=2.36-3+b1 libbrotli1=1.0.9-2+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-4 libc-dev-bin=2.31-4 libc6=2.31-4 libc6-dev=2.31-4 libcap-ng0=0.7.9-2.2 libcc1-0=10.2.0-15 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-2 libctf0=2.35.1-2 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.254 libdebhelper-perl=13.2.1 libdpkg-perl=1.20.5 libelf1=0.181-1 libexpat1=2.2.10-1 libffi7=3.3-4 libfile-stripnondeterminism-perl=1.9.0-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.2+dfsg-4 libgcc-10-dev=10.2.0-15 libgcc-s1=10.2.0-15 libgcrypt20=1.8.6-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran5=10.2.0-15 libglib2.0-0=2.66.1-2 libgmp10=2:6.2.0+dfsg-6 libgomp1=10.2.0-15 libgpg-error0=1.38-2 libgssapi-krb5-2=1.17-10 libicu67=67.1-4 libimagequant0=2.12.2-1.1 libisl22=0.22.1-1 libitm1=10.2.0-15 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.0.5-1.1 libjs-jquery=3.5.1+dfsg-4 libjs-jquery-hotkeys=0~20130707+git2d51e3a9+dfsg-2 libjs-jquery-isonscreen=1.2.0-1 libjs-jquery-metadata=12-1.1 libjs-jquery-tablesorter=1:2.31.3+dfsg1-1 libjs-jquery-throttle-debounce=1.1+dfsg.1-1 libjs-jquery-ui=1.12.1+dfsg-7 libjs-sphinxdoc=3.2.1-2 libjs-underscore=1.9.1~dfsg-1 libk5crypto3=1.17-10 libkeyutils1=1.6.1-2 libkrb5-3=1.17-10 libkrb5support0=1.17-10 liblapack3=3.9.0-3 liblbfgsb0=3.0+dfsg.3-9 liblcms2-2=2.9-4+b1 liblsan0=10.2.0-15 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-5 libmagic1=1:5.38-5 libmount1=2.36-3+b1 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20200918-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnss-nis=3.1-4 libnss-nisplus=1.3-4 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libparasail-dev=2.4.2+dfsg-2+b1 libparasail3=2.4.2+dfsg-2+b1 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libperl5.30=5.30.3-4 libpipeline1=1.5.3-1 libpng16-16=1.6.37-3 libpython3-stdlib=3.8.6-1 libpython3.8-minimal=3.8.6-1 libpython3.8-stdlib=3.8.6-1 libpython3.9-minimal=3.9.0-5 libpython3.9-stdlib=3.9.0-5 libquadmath0=10.2.0-15 libreadline8=8.0-4 libseccomp2=2.4.4-1+b1 libselinux1=3.1-2+b1 libsigsegv2=2.12-2 libsmartcols1=2.36-3+b1 libsqlite3-0=3.33.0-1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-15 libstdc++6=10.2.0-15 libsub-override-perl=0.09-2 libsystemd0=246.6-2 libtcl8.6=8.6.10+dfsg-1 libtiff5=4.1.0+git191117-2 libtinfo6=6.2+20200918-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtk8.6=8.6.10-1 libtool=2.4.6-14 libtsan0=10.2.0-15 libubsan1=10.2.0-15 libuchardet0=0.0.7-1 libudev1=246.6-2 libunistring2=0.9.10-4 libuuid1=2.36-3+b1 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libx11-6=2:1.6.12-1 libx11-data=2:1.6.12-1 libxau6=1:1.0.8-1+b2 libxcb1=1.14-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxft2=2.3.2-2 libxml2=2.9.10+dfsg-6.1 libxrender1=1:0.9.10-1 libxss1=1:1.2.3-1 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.1-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 mime-support=3.64 ncurses-base=6.2+20200918-1 ncurses-bin=6.2+20200918-1 node-html5shiv=3.7.3+dfsg-3 node-jquery=3.5.1+dfsg-4 openssl=1.1.1h-1 patch=2.7.6-6 perl=5.30.3-4 perl-base=5.30.3-4 perl-modules-5.30=5.30.3-4 po-debconf=1.0.21 python-babel-localedata=2.8.0+dfsg.1-4 python-matplotlib-data=3.3.2-2 python-pip-whl=20.1.1-2 python3=3.8.6-1 python3-alabaster=0.7.8-1.1 python3-all=3.8.6-1 python3-apipkg=1.5-5 python3-atomicwrites=1.4.0-1 python3-attr=19.3.0-5 python3-babel=2.8.0+dfsg.1-4 python3-certifi=2020.6.20-1 python3-chardet=3.0.4-7 python3-cov-core=1.15.0-3 python3-coverage=5.1+dfsg.1-2+b1 python3-cycler=0.10.0-3 python3-dateutil=2.8.1-4 python3-decorator=4.4.2-2 python3-distutils=3.8.6-1 python3-docutils=0.16+dfsg-3 python3-edlib=1.2.4-2+b3 python3-execnet=1.7.1-3 python3-hypothesis=5.32.1-1 python3-idna=2.10-1 python3-imagesize=1.2.0-2 python3-importlib-metadata=1.6.0-2 python3-jinja2=2.11.2-1 python3-kiwisolver=1.2.0-1+b1 python3-lib2to3=3.8.6-1 python3-markupsafe=1.1.1-1+b2 python3-matplotlib=3.3.2-2 python3-minimal=3.8.6-1 python3-more-itertools=4.2.0-3 python3-nose2=0.9.2-1 python3-numpy=1:1.19.2-2+b1 python3-packaging=20.4-1 python3-pandas=1.1.3+dfsg-2 python3-pandas-lib=1.1.3+dfsg-2 python3-parasail=1.2-3 python3-pil=7.2.0-1+b1 python3-pip=20.1.1-2 python3-pkg-resources=50.3.0-1 python3-pluggy=0.13.0-5 python3-ply=3.11-4 python3-psutil=5.7.3-1 python3-py=1.9.0-1 python3-pygments=2.7.1+dfsg-1 python3-pyparsing=2.4.7-1 python3-pytest=4.6.11-1 python3-pytest-arraydiff=0.3-1 python3-pytest-cov=2.8.1-1 python3-pytest-doctestplus=0.7.0-1 python3-pytest-forked=1.3.0-1 python3-pytest-mock=1.10.4-3 python3-pytest-openfiles=0.5.0-1 python3-pytest-remotedata=0.3.2-1 python3-pytest-timeout=1.4.1-1 python3-pytest-xdist=1.32.0-2 python3-requests=2.24.0+dfsg-1 python3-roman=2.0.0-5 python3-scipy=1.5.2-2+b1 python3-seaborn=0.10.1-2 python3-setuptools=50.3.0-1 python3-six=1.15.0-1 python3-snowballstemmer=2.0.0-2 python3-sortedcontainers=2.1.0-2 python3-sphinx=3.2.1-2 python3-sphinx-argparse=0.2.2-3 python3-sphinx-rtd-theme=0.5.0+dfsg-1 python3-tk=3.8.6-1 python3-tqdm=4.51.0-1 python3-tz=2020.1-2 python3-urllib3=1.25.9-1 python3-wcwidth=0.1.9+dfsg1-2 python3-wheel=0.34.2-1 python3-zipp=1.0.0-3 python3.8=3.8.6-1 python3.8-minimal=3.8.6-1 python3.9=3.9.0-5 python3.9-minimal=3.9.0-5 readline-common=8.0-4 sed=4.7-1 sensible-utils=0.0.12+nmu1 sgml-base=1.30 sphinx-common=3.2.1-2 sphinx-rtd-theme-common=0.5.0+dfsg-1 sysvinit-utils=2.96-5 tar=1.30+dfsg-7 tk8.6-blt2.5=2.5.3+dfsg-4+b1 ttf-bitstream-vera=1.10-8 tzdata=2020d-1 ucf=3.0043 util-linux=2.36-3+b1 x11-common=1:7.7+21 xml-core=0.18+nmu1 xonsh=0.9.24+dfsg-1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201028T033542Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d pychopper=2.5.0-1 && mkdir -p /build/pychopper-3JSe8A && dpkg-source --no-check -x /*.dsc /build/pychopper-3JSe8A/pychopper-2.5.0 && chown -R builduser:builduser /build/pychopper-3JSe8A" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pychopper-3JSe8A/pychopper-2.5.0 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1603719456" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/pychopper-3JSe8A /tmp/pychopper-2.5.0-1l7ytr2pd bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201028T033542Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.XoKs7Kk0Cq as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.XoKs7Kk0Cq Reading package lists... Building dependency tree... util-linux is already the newest version (2.36-3+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201028T033542Z unstable/main amd64 libfakeroot amd64 1.25.3-1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201028T033542Z unstable/main amd64 fakeroot amd64 1.25.3-1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (951 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4664 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1_amd64.deb ... Unpacking fakeroot (1.25.3-1) ... Setting up libfakeroot:amd64 (1.25.3-1) ... Setting up fakeroot (1.25.3-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201028T033542Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.XoKs7Kk0Cq Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20201028T033542Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 23s (980 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.XoKs7Kk0Cq I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d pychopper=2.5.0-1 && mkdir -p /build/pychopper-3JSe8A && dpkg-source --no-check -x /*.dsc /build/pychopper-3JSe8A/pychopper-2.5.0 && chown -R builduser:builduser /build/pychopper-3JSe8A"' exec /tmp/mmdebstrap.XoKs7Kk0Cq Reading package lists... NOTICE: 'pychopper' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pychopper.git Please use: git clone https://salsa.debian.org/med-team/pychopper.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 41.0 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main pychopper 2.5.0-1 (dsc) [2771 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main pychopper 2.5.0-1 (tar) [41.0 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main pychopper 2.5.0-1 (diff) [3808 B] Fetched 41.0 MB in 33s (1241 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'pychopper_2.5.0-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting pychopper in /build/pychopper-3JSe8A/pychopper-2.5.0 dpkg-source: info: unpacking pychopper_2.5.0.orig.tar.gz dpkg-source: info: unpacking pychopper_2.5.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixTests.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pychopper-3JSe8A/pychopper-2.5.0 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1603719456" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.XoKs7Kk0Cq dpkg-buildpackage: info: source package pychopper dpkg-buildpackage: info: source version 2.5.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-source: info: using options from pychopper-2.5.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pychopper-3JSe8A/pychopper-2.5.0' dh_auto_clean install -d /build/pychopper-3JSe8A/pychopper-2.5.0/debian/.debhelper/generated/_source/home pybuild --clean --test-pytest -i python{version} -p "3.9 3.8" I: pybuild base:217: python3.9 setup.py clean running clean removing '/build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it I: pybuild base:217: python3.8 setup.py clean running clean removing '/build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; rm -rf .pytest_cache .pybuild make clean make[2]: Entering directory '/build/pychopper-3JSe8A/pychopper-2.5.0' rm -fr build/ rm -fr dist/ rm -fr .eggs/ find . -name '*.egg-info' -exec rm -fr {} + find . -name '*.egg' -exec rm -f {} + find . -name '*.pyc' -exec rm -f {} + find . -name '*.pyo' -exec rm -f {} + find . -name '*~' -exec rm -f {} + find . -name '__pycache__' -exec rm -fr {} + rm -f .coverage rm -fr htmlcov/ make[2]: Leaving directory '/build/pychopper-3JSe8A/pychopper-2.5.0' cd docs && make clean # fails make[2]: Entering directory '/build/pychopper-3JSe8A/pychopper-2.5.0/docs' rm -rf _build/* rm -f pychopper.rst rm -f modules.rst make[2]: Leaving directory '/build/pychopper-3JSe8A/pychopper-2.5.0/docs' rm -f docs/cmd_list.rst docs/pychopper.phmm_data.rst docs/pychopper.primer_data.rst docs/pychopper.tests.rst rm -f cdna_classifier_report.pdf cdna_classifier_report.tsv make[1]: Leaving directory '/build/pychopper-3JSe8A/pychopper-2.5.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-pychopper.substvars debian/files rm -fr -- debian/python3-pychopper/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-indep dh binary-indep --with python3 --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild install -d /build/pychopper-3JSe8A/pychopper-2.5.0/debian/.debhelper/generated/_source/home pybuild --configure --test-pytest -i python{version} -p "3.9 3.8" I: pybuild base:217: python3.9 setup.py config running config I: pybuild base:217: python3.8 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/pychopper-3JSe8A/pychopper-2.5.0' dh_auto_build pybuild --build --test-pytest -i python{version} -p "3.9 3.8" I: pybuild base:217: /usr/bin/python3.9 setup.py build running build running build_py creating /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/alignment_hits.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/__init__.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/hmmer_backend.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/edlib_backend.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/common_structures.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/report.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/parasail_backend.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/chopper.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/utils.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper copying pychopper/seq_utils.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper creating /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/__init__.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data creating /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data copying pychopper/primer_data/__init__.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data running egg_info creating pychopper.egg-info writing pychopper.egg-info/PKG-INFO writing dependency_links to pychopper.egg-info/dependency_links.txt writing requirements to pychopper.egg-info/requires.txt writing top-level names to pychopper.egg-info/top_level.txt writing manifest file 'pychopper.egg-info/SOURCES.txt' reading manifest file 'pychopper.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: manifest_maker: MANIFEST.in, line 8: unknown action 'rerursive-include' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'rerursive-include' warning: no files found matching '*.jpg' under directory 'docs' warning: no files found matching '*.png' under directory 'docs' warning: no files found matching '*.gif' under directory 'docs' writing manifest file 'pychopper.egg-info/SOURCES.txt' copying pychopper/primer_data/PCS110_primers.fas -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data copying pychopper/primer_data/cDNA_SSP_VNP.fas -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data copying pychopper/phmm_data/PCS110_primers.hmm.h3m -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3p -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3i -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3m -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3f -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3i -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3p -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3f -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data running build_scripts creating build creating build/scripts-3.9 copying and adjusting scripts/cdna_classifier.py -> build/scripts-3.9 changing mode of build/scripts-3.9/cdna_classifier.py from 644 to 755 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper copying pychopper/alignment_hits.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper copying pychopper/__init__.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper copying pychopper/hmmer_backend.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper copying pychopper/edlib_backend.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper copying pychopper/common_structures.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper copying pychopper/report.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper copying pychopper/parasail_backend.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper copying pychopper/chopper.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper copying pychopper/utils.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper copying pychopper/seq_utils.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper creating /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/__init__.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data creating /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/primer_data copying pychopper/primer_data/__init__.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/primer_data running egg_info writing pychopper.egg-info/PKG-INFO writing dependency_links to pychopper.egg-info/dependency_links.txt writing requirements to pychopper.egg-info/requires.txt writing top-level names to pychopper.egg-info/top_level.txt reading manifest file 'pychopper.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: manifest_maker: MANIFEST.in, line 8: unknown action 'rerursive-include' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'rerursive-include' warning: no files found matching '*.jpg' under directory 'docs' warning: no files found matching '*.png' under directory 'docs' warning: no files found matching '*.gif' under directory 'docs' writing manifest file 'pychopper.egg-info/SOURCES.txt' copying pychopper/primer_data/PCS110_primers.fas -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/primer_data copying pychopper/primer_data/cDNA_SSP_VNP.fas -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/primer_data copying pychopper/phmm_data/PCS110_primers.hmm.h3m -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3p -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3i -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3m -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3f -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3i -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3p -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3f -> /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data running build_scripts creating build/scripts-3.8 copying and adjusting scripts/cdna_classifier.py -> build/scripts-3.8 changing mode of build/scripts-3.8/cdna_classifier.py from 644 to 755 cd docs && PYTHONPATH=.. make man make[2]: Entering directory '/build/pychopper-3JSe8A/pychopper-2.5.0/docs' sphinx-build -b man -d _build/doctrees . _build/man Running Sphinx v3.2.1 ./cmd_tools.py:10: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp Found following scripts: /build/pychopper-3JSe8A/pychopper-2.5.0/docs/.. /build/pychopper-3JSe8A/pychopper-2.5.0/docs/../scripts ['cdna_classifier.py'] Matplotlib created a temporary config/cache directory at /tmp/matplotlib-avcxy_0h because the default path (/nonexistent/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. Creating file ./pychopper.rst. Creating file ./pychopper.phmm_data.rst. Creating file ./pychopper.primer_data.rst. Creating file ./pychopper.tests.rst. Creating file ./modules.rst. making output directory... done building [mo]: targets for 0 po files that are out of date building [man]: all manpages updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] cmd_list Matplotlib created a temporary config/cache directory at /tmp/matplotlib-4_g337rs because the default path (/nonexistent/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. reading sources... [ 28%] index reading sources... [ 42%] modules reading sources... [ 57%] pychopper reading sources... [ 71%] pychopper.phmm_data reading sources... [ 85%] pychopper.primer_data reading sources... [100%] pychopper.tests looking for now-outdated files... none found pickling environment... done checking consistency... done writing... pychopper.1 { cmd_list modules pychopper pychopper.phmm_data pychopper.primer_data pychopper.tests } done build succeeded. The manual pages are in _build/man. Build finished. The manual pages are in _build/man. make[2]: Leaving directory '/build/pychopper-3JSe8A/pychopper-2.5.0/docs' make[1]: Leaving directory '/build/pychopper-3JSe8A/pychopper-2.5.0' rm -f debian/python3-pychopper.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/pychopper-3JSe8A/pychopper-2.5.0' dh_auto_test -- --system=custom --test-args="PYTHONPATH={build_dir} {interpreter} -m pytest -v" pybuild --test --test-pytest -i python{version} -p "3.9 3.8" --system=custom "--test-args=PYTHONPATH={build_dir} {interpreter} -m pytest -v" I: pybuild base:217: PYTHONPATH=/build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build python3.9 -m pytest -v ============================= test session starts ============================== platform linux -- Python 3.9.0+, pytest-4.6.11, py-1.9.0, pluggy-0.13.0 -- /usr/bin/python3.9 cachedir: .pytest_cache hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase('/build/pychopper-3JSe8A/pychopper-2.5.0/.hypothesis/examples') rootdir: /build/pychopper-3JSe8A/pychopper-2.5.0, inifile: pytest.ini, testpaths: pychopper plugins: xonsh-0.9.24, doctestplus-0.7.0, cov-2.8.1, hypothesis-5.32.1, forked-1.3.0, timeout-1.4.1, mock-1.10.4, arraydiff-0.3, xdist-1.32.0, openfiles-0.5.0, remotedata-0.3.2 collecting ... collected 3 items pychopper/tests/test_detector.py::TestDetector::testPairAlign PASSED [ 33%] pychopper/tests/test_detector.py::TestDetector::testScoreCutoff PASSED [ 66%] pychopper/tests/test_regression_simple.py::TestIntegration::testIntegration PASSED [100%] =========================== 3 passed in 4.07 seconds =========================== I: pybuild base:217: PYTHONPATH=/build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build python3.8 -m pytest -v ============================= test session starts ============================== platform linux -- Python 3.8.6, pytest-4.6.11, py-1.9.0, pluggy-0.13.0 -- /usr/bin/python3.8 cachedir: .pytest_cache hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase('/build/pychopper-3JSe8A/pychopper-2.5.0/.hypothesis/examples') rootdir: /build/pychopper-3JSe8A/pychopper-2.5.0, inifile: pytest.ini, testpaths: pychopper plugins: xonsh-0.9.24, doctestplus-0.7.0, cov-2.8.1, hypothesis-5.32.1, forked-1.3.0, timeout-1.4.1, mock-1.10.4, arraydiff-0.3, xdist-1.32.0, openfiles-0.5.0, remotedata-0.3.2 collecting ... collected 3 items pychopper/tests/test_detector.py::TestDetector::testPairAlign PASSED [ 33%] pychopper/tests/test_detector.py::TestDetector::testScoreCutoff PASSED [ 66%] pychopper/tests/test_regression_simple.py::TestIntegration::testIntegration PASSED [100%] =========================== 3 passed in 3.87 seconds =========================== rm -fr -- /tmp/dh-xdg-rundir-gUMulVvL make[1]: Leaving directory '/build/pychopper-3JSe8A/pychopper-2.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild rm -f -- debian/python3-pychopper.substvars rm -fr -- debian/.debhelper/generated/python3-pychopper/ debian/python3-pychopper/ debian/tmp/ rm -f debian/python3-pychopper.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/pychopper-3JSe8A/pychopper-2.5.0' dh_auto_install install -d /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper pybuild --install --test-pytest -i python{version} -p "3.9 3.8" --dest-dir /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper I: pybuild base:217: /usr/bin/python3.9 setup.py install --root /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper running install running build running build_py running egg_info writing pychopper.egg-info/PKG-INFO writing dependency_links to pychopper.egg-info/dependency_links.txt writing requirements to pychopper.egg-info/requires.txt writing top-level names to pychopper.egg-info/top_level.txt reading manifest file 'pychopper.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: manifest_maker: MANIFEST.in, line 8: unknown action 'rerursive-include' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'rerursive-include' warning: no files found matching '*.jpg' under directory 'docs' warning: no files found matching '*.png' under directory 'docs' warning: no files found matching '*.gif' under directory 'docs' writing manifest file 'pychopper.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9 creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/primer_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data/__init__.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/primer_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data/PCS110_primers.fas -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/primer_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data/cDNA_SSP_VNP.fas -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/primer_data creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/primer_data/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/primer_data/__pycache__/__init__.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/primer_data/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/alignment_hits.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__init__.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/hmmer_backend.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/edlib_backend.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/common_structures.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3m -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/__init__.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3p -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3i -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3m -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3f -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3i -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/__pycache__/__init__.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3p -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3f -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/report.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/parasail_backend.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/chopper.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/utils.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/seq_utils.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/hmmer_backend.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/edlib_backend.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/__init__.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/common_structures.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/seq_utils.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/chopper.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/parasail_backend.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/utils.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/report.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.9_pychopper/build/pychopper/__pycache__/alignment_hits.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__pycache__ byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/primer_data/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/alignment_hits.py to alignment_hits.cpython-39.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/hmmer_backend.py to hmmer_backend.cpython-39.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/edlib_backend.py to edlib_backend.cpython-39.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/common_structures.py to common_structures.cpython-39.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/phmm_data/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/report.py to report.cpython-39.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/parasail_backend.py to parasail_backend.cpython-39.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/chopper.py to chopper.cpython-39.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/utils.py to utils.cpython-39.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper/seq_utils.py to seq_utils.cpython-39.pyc running install_egg_info Copying pychopper.egg-info to /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.9/dist-packages/pychopper-2.5.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/bin copying build/scripts-3.9/cdna_classifier.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/bin changing mode of /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/bin/cdna_classifier.py to 755 I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper running install running build running build_py running egg_info writing pychopper.egg-info/PKG-INFO writing dependency_links to pychopper.egg-info/dependency_links.txt writing requirements to pychopper.egg-info/requires.txt writing top-level names to pychopper.egg-info/top_level.txt reading manifest file 'pychopper.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: manifest_maker: MANIFEST.in, line 8: unknown action 'rerursive-include' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'rerursive-include' warning: no files found matching '*.jpg' under directory 'docs' warning: no files found matching '*.png' under directory 'docs' warning: no files found matching '*.gif' under directory 'docs' writing manifest file 'pychopper.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8 creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/primer_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/primer_data/__init__.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/primer_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/primer_data/PCS110_primers.fas -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/primer_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/primer_data/cDNA_SSP_VNP.fas -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/primer_data creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/primer_data/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/primer_data/__pycache__/__init__.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/primer_data/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/alignment_hits.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/__init__.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/hmmer_backend.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/edlib_backend.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/common_structures.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3m -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data/__init__.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3p -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3i -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3m -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3f -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3i -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data/__pycache__/__init__.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3p -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3f -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/report.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/parasail_backend.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/chopper.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/utils.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/seq_utils.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper creating /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/__pycache__/hmmer_backend.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/__pycache__/edlib_backend.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/__pycache__/__init__.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/__pycache__/common_structures.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/__pycache__/seq_utils.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/__pycache__/chopper.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/__pycache__/parasail_backend.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/__pycache__/utils.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/__pycache__/report.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/__pycache__ copying /build/pychopper-3JSe8A/pychopper-2.5.0/.pybuild/cpython3_3.8_pychopper/build/pychopper/__pycache__/alignment_hits.cpython-38.pyc -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/__pycache__ byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/primer_data/__init__.py to __init__.cpython-38.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/alignment_hits.py to alignment_hits.cpython-38.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/__init__.py to __init__.cpython-38.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/hmmer_backend.py to hmmer_backend.cpython-38.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/edlib_backend.py to edlib_backend.cpython-38.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/common_structures.py to common_structures.cpython-38.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/phmm_data/__init__.py to __init__.cpython-38.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/report.py to report.cpython-38.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/parasail_backend.py to parasail_backend.cpython-38.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/chopper.py to chopper.cpython-38.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/utils.py to utils.cpython-38.pyc byte-compiling /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper/seq_utils.py to seq_utils.cpython-38.pyc running install_egg_info Copying pychopper.egg-info to /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/lib/python3.8/dist-packages/pychopper-2.5.0.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.8/cdna_classifier.py -> /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/bin changing mode of /build/pychopper-3JSe8A/pychopper-2.5.0/debian/python3-pychopper/usr/bin/cdna_classifier.py to 755 find debian/python3-pychopper -name .gitignore -delete make[1]: Leaving directory '/build/pychopper-3JSe8A/pychopper-2.5.0' dh_installdocs -i -O--buildsystem=pybuild install -d debian/python3-pychopper/usr/share/doc/python3-pychopper install -d debian/.debhelper/generated/python3-pychopper install -p -m0644 debian/copyright debian/python3-pychopper/usr/share/doc/python3-pychopper/copyright dh_installchangelogs -i -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python3-pychopper/usr/share/doc/python3-pychopper/changelog.Debian dh_installman -i -O--buildsystem=pybuild install -d debian/python3-pychopper/usr/share/man/man1/ install -p -m0644 ./docs/_build/man/pychopper.1 debian/python3-pychopper/usr/share/man/man1/pychopper.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-pychopper/usr/share/man/man1/pychopper.1 mv debian/python3-pychopper/usr/share/man/man1/pychopper.1.dh-new debian/python3-pychopper/usr/share/man/man1/pychopper.1 chmod 0644 -- debian/python3-pychopper/usr/share/man/man1/pychopper.1 dh_python3 -i -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 4.20200925 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-i', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': False, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.8,3.9 (default=3.8) D: dh_python3 debhelper:152: source=pychopper, binary packages=['python3-pychopper'] D: dh_python3 dh_python3:183: processing package python3-pychopper... D: dh_python3 fs:49: moving files from debian/python3-pychopper/usr/lib/python3.8/dist-packages to debian/python3-pychopper/usr/lib/python3/dist-packages/ D: dh_python3 fs:49: moving files from debian/python3-pychopper/usr/lib/python3.9/dist-packages to debian/python3-pychopper/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-pychopper details = {'requires.txt': {'debian/python3-pychopper/usr/lib/python3/dist-packages/pychopper-2.5.0.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-pychopper D: dh_python3 pydist:142: trying to find dependency for edlib (python=None) D: dh_python3 pydist:142: trying to find dependency for matplotlib (python=None) D: dh_python3 pydist:142: trying to find dependency for pandas (python=None) D: dh_python3 pydist:142: trying to find dependency for parasail (python=None) D: dh_python3 pydist:142: trying to find dependency for pytest (python=None) D: dh_python3 pydist:142: trying to find dependency for seaborn (python=None) D: dh_python3 pydist:142: trying to find dependency for six (python=None) D: dh_python3 pydist:142: trying to find dependency for sphinx (python=None) D: dh_python3 pydist:142: trying to find dependency for sphinx_rtd_theme (python=None) D: dh_python3 pydist:142: trying to find dependency for tqdm (python=None) D: dh_python3 depends:275: D={'python3-six', 'python3:any', 'python3-tqdm', 'python3-parasail', 'python3-pytest', 'python3-sphinx-rtd-theme', 'python3-edlib', 'python3-seaborn', 'python3-sphinx', 'python3-pandas', 'python3-matplotlib'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -i -O--buildsystem=pybuild dh_lintian -i -O--buildsystem=pybuild install -d debian/python3-pychopper/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/python3-pychopper/usr/share/lintian/overrides/python3-pychopper dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild cd debian/python3-pychopper chmod a-x usr/share/doc/python3-pychopper/changelog.Debian usr/share/man/man1/pychopper.1 gzip -9nf usr/share/doc/python3-pychopper/changelog.Debian usr/share/man/man1/pychopper.1 cd '/build/pychopper-3JSe8A/pychopper-2.5.0' dh_fixperms -i -O--buildsystem=pybuild find debian/python3-pychopper ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-pychopper/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-pychopper/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-pychopper/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-pychopper/usr/share/man debian/python3-pychopper/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-pychopper -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-pychopper/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-pychopper/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild install -d debian/python3-pychopper/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-pychopper/DEBIAN/postinst cat debian/python3-pychopper.postinst.debhelper >> debian/python3-pychopper/DEBIAN/postinst chmod 0755 -- debian/python3-pychopper/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-pychopper/DEBIAN/prerm cat debian/python3-pychopper.prerm.debhelper >> debian/python3-pychopper/DEBIAN/prerm chmod 0755 -- debian/python3-pychopper/DEBIAN/prerm dh_gencontrol -i -O--buildsystem=pybuild echo misc:Depends= >> debian/python3-pychopper.substvars echo misc:Pre-Depends= >> debian/python3-pychopper.substvars dpkg-gencontrol -ppython3-pychopper -ldebian/changelog -Tdebian/python3-pychopper.substvars -Pdebian/python3-pychopper chmod 0644 -- debian/python3-pychopper/DEBIAN/control dh_md5sums -i -O--buildsystem=pybuild cd debian/python3-pychopper >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-pychopper/DEBIAN/md5sums dh_builddeb -i -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-pychopper .. dpkg-deb: building package 'python3-pychopper' in '../python3-pychopper_2.5.0-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../pychopper_2.5.0-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-source: info: using options from pychopper-2.5.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/pychopper-3JSe8A /tmp/pychopper-2.5.0-1l7ytr2pd I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.XoKs7Kk0Cq... I: success in 719.5106 seconds md5: python3-pychopper_2.5.0-1_all.deb: OK sha1: python3-pychopper_2.5.0-1_all.deb: OK sha256: python3-pychopper_2.5.0-1_all.deb: OK Checksums: OK