Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/proteinortho/proteinortho_6.0.28+dfsg-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/proteinortho-6.0.28+dfsg-1iw5zmsuo/proteinortho_6.0.28+dfsg-1_amd64.buildinfo Get source package info: proteinortho=6.0.28+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/proteinortho/6.0.28+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-6 bsdutils=1:2.36.1-6 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.2 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.10.0-1 diamond-aligner=2.0.6-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210126-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-3 gettext-base=0.21-3 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-9 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libblas-dev=3.9.0-3 libblas3=3.9.0-3 libblkid1=2.36.1-6 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcom-err2=1.45.7-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.256 libdebhelper-perl=13.3.2 libdpkg-perl=1.20.7.1 libelf1=0.182-3 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.10.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgfortran5=10.2.1-6 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-6 libisl23=0.23-1 libitm1=10.2.1-6 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack-dev=3.9.0-3 liblapack3=3.9.0-3 liblmdb0=0.9.24-1 liblsan0=10.2.1-6 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmbedcrypto3=2.16.9-0.1 libmbedtls12=2.16.9-0.1 libmbedx509-0=2.16.9-0.1 libmount1=2.36.1-6 libmpc3=1.2.0-1 libmpdec3=2.5.1-1 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libprocps8=2:3.3.16-5 libpython3-stdlib=3.9.1-1 libpython3.9-minimal=3.9.1-3 libpython3.9-stdlib=3.9.1-3 libquadmath0=10.2.1-6 libreadline8=8.1-1 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsigsegv2=2.13-1 libsmartcols1=2.36.1-6 libsqlite3-0=3.34.1-1 libssl1.1=1.1.1i-3 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.2-5 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.2-5 libunistring2=0.9.10-4 libuuid1=2.36.1-6 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.12-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.68 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 ncbi-blast+=2.11.0+ds-1 ncbi-data=6.1.20170106+dfsg1-9 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 patch=2.7.6-7 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 po-debconf=1.0.21+nmu1 procps=2:3.3.16-5 python3=3.9.1-1 python3-minimal=3.9.1-1 python3.9=3.9.1-3 python3.9-minimal=3.9.1-3 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2021a-1 util-linux=2.36.1-6 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210203T203559Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210131T204918Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d proteinortho=6.0.28+dfsg-1 && mkdir -p /build/proteinortho-0zlpIs && dpkg-source --no-check -x /*.dsc /build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg && chown -R builduser:builduser /build/proteinortho-0zlpIs" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612175128" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/proteinortho-0zlpIs /tmp/proteinortho-6.0.28+dfsg-1iw5zmsuo bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210131T204918Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.PUzawGFO3b as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.PUzawGFO3b Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210131T204918Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210131T204918Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1091 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4661 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210203T203559Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210131T204918Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.PUzawGFO3b Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210203T203559Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210131T204918Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210203T203559Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210203T203559Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210203T203559Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210203T203559Z unstable/main amd64 Packages [11.6 MB] Fetched 34.4 MB in 29s (1185 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.PUzawGFO3b I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d proteinortho=6.0.28+dfsg-1 && mkdir -p /build/proteinortho-0zlpIs && dpkg-source --no-check -x /*.dsc /build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg && chown -R builduser:builduser /build/proteinortho-0zlpIs"' exec /tmp/mmdebstrap.PUzawGFO3b Reading package lists... NOTICE: 'proteinortho' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/proteinortho.git Please use: git clone https://salsa.debian.org/med-team/proteinortho.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 520 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main proteinortho 6.0.28+dfsg-1 (dsc) [2184 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main proteinortho 6.0.28+dfsg-1 (tar) [511 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main proteinortho 6.0.28+dfsg-1 (diff) [7028 B] Fetched 520 kB in 1s (926 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'proteinortho_6.0.28+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting proteinortho in /build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg dpkg-source: info: unpacking proteinortho_6.0.28+dfsg.orig.tar.xz dpkg-source: info: unpacking proteinortho_6.0.28+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deb_diamond dpkg-source: info: applying baseline.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612175128" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.PUzawGFO3b dpkg-buildpackage: info: source package proteinortho dpkg-buildpackage: info: source version 6.0.28+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg' rm -rf src/BUILD test/C.faa.* test/E.faa.* test/C2.faa.* test/L.faa.* test/M.faa.* rm -rf src/lapack-3.8.0/ make[1]: Leaving directory '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg' Creating build directory ... Creating build directory ... Creating build directory ... Creating build directory ... [ 10%] Prepare proteinortho_clustering ... [ 20%] Building **proteinortho_clustering** with LAPACK (dynamic linking) g++ -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -Wl,--whole-archive -lpthread -Wl,--no-whole-archive [ 25%] Building **graphMinusRemovegraph** g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o src/BUILD/Linux_x86_64/proteinortho_graphMinusRemovegraph src/graphMinusRemovegraph.cpp -Wl,-z,relro -Wl,-z,now [ 50%] Building **cleanupblastgraph** g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o src/BUILD/Linux_x86_64/proteinortho_cleanupblastgraph src/cleanupblastgraph.cpp -Wl,-z,relro -Wl,-z,now [ 75%] Building **po_tree** cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o src/BUILD/Linux_x86_64/proteinortho_treeBuilderCore src/po_tree.c -Wl,-z,relro -Wl,-z,now src/po_tree.c: In function ‘fetch_matrix’: src/po_tree.c:330:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 330 | fscanf (datei, "%d\n", viecher); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/po_tree.c:341:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 341 | fscanf (datei, "%s ",(*pnamen)[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/po_tree.c:345:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 345 | fscanf (datei, "%s \n",(*pnamen)[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/po_tree.c:378:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 378 | fscanf (datei, "%c ",&(matrix[i][*ccs])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/po_tree.c:381:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | fscanf (datei, "%c \n",&(matrix[(*viecher)-1][*ccs])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - test max_of_diag() : 1 - test generate_random_vector() : 1 - test get_new_x() : 1 - test makeOrthogonal() : 1 - test normalize() : 1 - test getY() : 1 - test splitGroups() : 1 All test passed. ......OK dynamic linking was successful for proteinortho_clustering! [100%] Everything is compiled with no errors. make[1]: Leaving directory '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg' dh_auto_test -a make -j4 test make[1]: Entering directory '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg' [TEST] Clean up all test files... [TEST] 1. basic proteinortho6.pl -step=2 test. (algorithms that are not present are skipped) [TEST] Clean up all test files... [1/12] -p=blastp test: passed [2/12] -p=blastp+ synteny (PoFF) test: tput: No value for $TERM and no -T specified tput: No value for $TERM and no -T specified tput: No value for $TERM and no -T specified tput: No value for $TERM and no -T specified passed [3/12] -p=diamond test: passed [4/12] -p=diamond (--moresensitive) test (subparaBlast): passed [5/12] -p=lastp (lastal) test: lastal missing, skipping... [6/12] -p=topaz test: topaz missing, skipping... [7/12] -p=usearch test: usearch missing, skipping... [8/12] -p=ublast test: usearch missing, skipping... [9/12] -p=rapsearch test: rapsearch missing, skipping... [10/12] -p=blatp (blat) test: blat missing, skipping... [11/12] -p=mmseqsp (mmseqs) test: mmseqs missing, skipping... [12/12] -p=autoblast (automatically detect blastp,blastn,...) test: blastall missing, skipping... [TEST] 2. -step=3 tests (proteinortho_clustering) [1/2] various test functions of proteinortho_clustering (if this fails, try make clean first): passed [2/2] Compare results of 'with lapack' and 'without lapack': passed [TEST] All tests passed make[1]: Leaving directory '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg' mkdir -p /build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin dh_auto_install -- install PREFIX=/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin make -j4 install DESTDIR=/build/proteinortho-0zlpIs/proteinortho-6.0.28\+dfsg/debian/proteinortho AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" install PREFIX=/build/proteinortho-0zlpIs/proteinortho-6.0.28\+dfsg/debian/proteinortho/usr/bin make[2]: Entering directory '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg' INSTALLING everything to /build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin 'proteinortho6.pl' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho6.pl' 'proteinortho' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho' 'src/BUILD/Linux_x86_64/proteinortho_extract_from_graph.pl' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho_extract_from_graph.pl' 'src/BUILD/Linux_x86_64/proteinortho_formatUsearch.pl' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho_formatUsearch.pl' 'src/BUILD/Linux_x86_64/proteinortho_compareProteinorthoGraphs.pl' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho_compareProteinorthoGraphs.pl' 'src/BUILD/Linux_x86_64/proteinortho_do_mcl.pl' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho_do_mcl.pl' 'src/BUILD/Linux_x86_64/proteinortho2html.pl' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho2html.pl' 'src/BUILD/Linux_x86_64/proteinortho2xml.pl' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho2xml.pl' 'src/BUILD/Linux_x86_64/proteinortho_clustering' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho_clustering' 'src/BUILD/Linux_x86_64/proteinortho_singletons.pl' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho_singletons.pl' 'src/BUILD/Linux_x86_64/proteinortho_ffadj_mcs.py' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho_ffadj_mcs.py' 'src/BUILD/Linux_x86_64/proteinortho2tree.pl' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho2tree.pl' 'src/BUILD/Linux_x86_64/proteinortho_history.pl' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho_history.pl' 'src/BUILD/Linux_x86_64/proteinortho_cleanupblastgraph' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho_cleanupblastgraph' 'src/BUILD/Linux_x86_64/proteinortho_graphMinusRemovegraph' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho_graphMinusRemovegraph' 'src/BUILD/Linux_x86_64/proteinortho_treeBuilderCore' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho_treeBuilderCore' 'src/BUILD/Linux_x86_64/proteinortho_grab_proteins.pl' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho_grab_proteins.pl' 'src/BUILD/Linux_x86_64/proteinortho_summary.pl' -> '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin/proteinortho_summary.pl' Everything installed successfully to /build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin. If needed you can add /build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin to $PATH with 'export PATH=$PATH:/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg/debian/proteinortho/usr/bin'. make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg' make[1]: Leaving directory '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg' dh_install for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg' dh_fixperms find debian \( -name "*.faa" -o -name "*.gff" \) -exec chmod -x \{\} \; make[1]: Leaving directory '/build/proteinortho-0zlpIs/proteinortho-6.0.28+dfsg' dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'proteinortho' in '../proteinortho_6.0.28+dfsg-1_amd64.deb'. dpkg-deb: building package 'proteinortho-dbgsym' in '../proteinortho-dbgsym_6.0.28+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../proteinortho_6.0.28+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/proteinortho-0zlpIs /tmp/proteinortho-6.0.28+dfsg-1iw5zmsuo I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.PUzawGFO3b... I: success in 564.0974 seconds md5: proteinortho-dbgsym_6.0.28+dfsg-1_amd64.deb: OK md5: proteinortho_6.0.28+dfsg-1_amd64.deb: OK sha1: proteinortho-dbgsym_6.0.28+dfsg-1_amd64.deb: OK sha1: proteinortho_6.0.28+dfsg-1_amd64.deb: OK sha256: proteinortho-dbgsym_6.0.28+dfsg-1_amd64.deb: OK sha256: proteinortho_6.0.28+dfsg-1_amd64.deb: OK Checksums: OK