Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/pplacer/pplacer_1.1~alpha19-6_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/pplacer-1.1~alpha19-6a6yguamv/pplacer_1.1~alpha19-6_amd64.buildinfo Get source package info: pplacer=1.1~alpha19-6 Source URL: http://snapshot.notset.fr/mr/package/pplacer/1.1~alpha19-6/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-5+b1 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-5 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-13 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.5-1 dh-autoreconf=20 dh-ocaml=1.1.3 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-13 gcc=4:11.2.0-2 gcc-11=11.2.0-13 gcc-11-base=11.2.0-13 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-13 libatomic1=11.2.0-13 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbatteries-ocaml-dev=3.4.0-1 libbinutils=2.37-10 libblkid1=2.37.2-4 libbz2-1.0=1.0.8-5 libc-bin=2.33-1 libc-dev-bin=2.33-1 libc6=2.33-1 libc6-dev=2.33-1 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-13 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.27-1 libcrypt1=1:4.4.27-1 libcsv-ocaml-dev=2.4-1+b1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdpkg-perl=1.21.1 libelf1=0.186-1 libfile-stripnondeterminism-perl=1.13.0-1 libfindlib-ocaml=1.9.1-1 libgcc-11-dev=11.2.0-13 libgcc-s1=11.2.0-13 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgmp10=2:6.2.1+dfsg-3 libgomp1=11.2.0-13 libgpg-error0=1.43-1 libgsl-dev=2.7.1+dfsg-3 libgsl27=2.7.1+dfsg-3 libgslcblas0=2.7.1+dfsg-3 libgssapi-krb5-2=1.18.3-7 libicu67=67.1-7 libisl23=0.24-2 libitm1=11.2.0-13 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblsan0=11.2.0-13 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmcl-ocaml-dev=1:14-137+ds-9+b1 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libncurses-dev=6.3-1 libncurses5-dev=6.3-1 libncurses6=6.3-1 libncursesw6=6.3-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnum-ocaml=1.4-1 libnum-ocaml-dev=1.4-1 libocamlgsl-ocaml=1.24.3-1+b2 libocamlgsl-ocaml-dev=1.24.3-1+b2 libounit-ocaml-dev=2.2.4-1 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libquadmath0=11.2.0-13 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.13-1 libsmartcols1=2.37.2-4 libsqlite3-0=3.36.0-2 libsqlite3-dev=3.36.0-2 libsqlite3-ocaml=5.0.2-1+b1 libsqlite3-ocaml-dev=5.0.2-1+b1 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-13 libstdc++6=11.2.0-13 libsub-override-perl=0.09-2 libsystemd0=249.7-1 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-13 libubsan1=11.2.0-13 libuchardet0=0.0.7-1 libudev1=249.7-1 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libxml2=2.9.12+dfsg-5+b1 libxmlm-ocaml-dev=1.3.0-2+b3 libzip-ocaml=1.11-1 libzip-ocaml-dev=1.11-1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.5-2 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 mcl=1:14-137+ds-9+b1 ncurses-base=6.3-1 ncurses-bin=6.3-1 ocaml-base-nox=4.11.1-5 ocaml-compiler-libs=4.11.1-5 ocaml-findlib=1.9.1-1 ocaml-interp=4.11.1-5 ocaml-nox=4.11.1-5 ocamlbuild=0.14.0-2+b1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 util-linux=2.37.2-4 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211227T152656Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211227T152656Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211224T090631Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d pplacer=1.1~alpha19-6 && mkdir -p /build/pplacer-hsLaGT && dpkg-source --no-check -x /*.dsc /build/pplacer-hsLaGT/pplacer-1.1-alpha19 && chown -R builduser:builduser /build/pplacer-hsLaGT" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pplacer-hsLaGT/pplacer-1.1-alpha19 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1640164383" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/pplacer-hsLaGT /tmp/pplacer-1.1~alpha19-6a6yguamv bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211224T090631Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.UbnQZuVRGG as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.UbnQZuVRGG Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211224T090631Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211224T090631Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1108 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4680 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-1) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211227T152656Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211227T152656Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211224T090631Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.UbnQZuVRGG Get:1 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm InRelease [129 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211224T090631Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main Sources [11.8 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.1 MB in 19s (1237 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.UbnQZuVRGG I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d pplacer=1.1~alpha19-6 && mkdir -p /build/pplacer-hsLaGT && dpkg-source --no-check -x /*.dsc /build/pplacer-hsLaGT/pplacer-1.1-alpha19 && chown -R builduser:builduser /build/pplacer-hsLaGT"' exec /tmp/mmdebstrap.UbnQZuVRGG Reading package lists... NOTICE: 'pplacer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pplacer.git Please use: git clone https://salsa.debian.org/med-team/pplacer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 861 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main pplacer 1.1~alpha19-6 (dsc) [2206 B] Get:2 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main pplacer 1.1~alpha19-6 (tar) [831 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main pplacer 1.1~alpha19-6 (diff) [28.5 kB] Fetched 861 kB in 1s (1199 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'pplacer_1.1~alpha19-6.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting pplacer in /build/pplacer-hsLaGT/pplacer-1.1-alpha19 dpkg-source: info: unpacking pplacer_1.1~alpha19.orig.tar.gz dpkg-source: info: unpacking pplacer_1.1~alpha19-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ocamlbuild dpkg-source: info: applying fix_makefile.patch dpkg-source: info: applying ocaml_stdlib dpkg-source: info: applying ocaml_bytes dpkg-source: info: applying spelling.patch dpkg-source: info: applying ocaml-batteries.patch dpkg-source: info: applying PR-337.patch dpkg-source: info: applying fix_ocaml_build_error_List.min.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pplacer-hsLaGT/pplacer-1.1-alpha19 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1640164383" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.UbnQZuVRGG dpkg-buildpackage: info: source package pplacer dpkg-buildpackage: info: source version 1.1~alpha19-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with=ocaml dh_auto_clean make -j10 clean make[1]: Entering directory '/build/pplacer-hsLaGT/pplacer-1.1-alpha19' rm -rf bin rm -f tests.native ocamlbuild -clean rm -f *.mltop make[1]: Leaving directory '/build/pplacer-hsLaGT/pplacer-1.1-alpha19' dh_ocamlclean dh_clean debian/rules binary-arch dh binary-arch --with=ocaml dh_update_autotools_config -a dh_autoreconf -a dh_ocamlinit -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/pplacer-hsLaGT/pplacer-1.1-alpha19' # Fix race condition (fails due to multiple mkdirs) dh_auto_build --no-parallel make -j1 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/pplacer-hsLaGT/pplacer-1.1-alpha19' if [ ! -e bin ]; then mkdir bin; fi make pplacer.native make[3]: Entering directory '/build/pplacer-hsLaGT/pplacer-1.1-alpha19' ocamlbuild pplacer.native /usr/bin/ocamlopt.opt unix.cmxa -I /usr/lib/ocaml/ocamlbuild /usr/lib/ocaml/ocamlbuild/ocamlbuildlib.cmxa myocamlbuild.ml /usr/lib/ocaml/ocamlbuild/ocamlbuild.cmx -o myocamlbuild /bin/sh: 1: git: not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: Warning: the tag "pkg_bigarray" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 102-110: Warning: the tag "pkg_unix" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/cddcore.c mv cddcore.o cdd_src/cddcore.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/cddio.c mv cddio.o cdd_src/cddio.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/cddlib.c + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/cddlib.c cdd_src/cddlib.c: In function ‘dd_DDMain’: cdd_src/cddlib.c:116:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 116 | for (itemp=1; cone->OrderVector[itemp]!=hh; itemp++); | ^~~ cdd_src/cddlib.c:117:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 117 | otemp=cone->OrderVector[cone->Iteration]; | ^~~~~ mv cddlib.o cdd_src/cddlib.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/cddlp.c mv cddlp.o cdd_src/cddlp.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/cddmp.c mv cddmp.o cdd_src/cddmp.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/cddproj.c mv cddproj.o cdd_src/cddproj.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/setoper.c mv setoper.o cdd_src/setoper.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/pplacer_cdd.c mv pplacer_cdd.o cdd_src/pplacer_cdd.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/caml_cdd.c mv caml_cdd.o cdd_src/caml_cdd.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c pam_src/pam.c mv pam.o pam_src/pam.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c pam_src/caml_pam.c + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c pam_src/caml_pam.c In file included from /usr/lib/ocaml/caml/bigarray.h:23, from pam_src/caml_pam.c:2: pam_src/caml_pam.c: In function ‘caml_pam’: /usr/lib/ocaml/caml/mlvalues.h:265:23: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 265 | #define String_val(x) ((const char *) Bp_val(x)) | ^ pam_src/caml_pam.c:18:16: note: in expansion of macro ‘String_val’ 18 | char *keep = String_val(keep_value); | ^~~~~~~~~~ mv caml_pam.o pam_src/caml_pam.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c pplacer_src/linear_c.c mv linear_c.o pplacer_src/linear_c.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c pplacer_src/unix_support.c mv unix_support.o pplacer_src/unix_support.o /usr/bin/ocamlmklib.opt -o cdd_src/cdd cdd_src/cddcore.o cdd_src/cddio.o cdd_src/cddlib.o cdd_src/cddlp.o cdd_src/cddmp.o cdd_src/cddproj.o cdd_src/setoper.o cdd_src/pplacer_cdd.o cdd_src/caml_cdd.o /usr/bin/ocamlmklib.opt -o pam_src/pplacer_pam pam_src/pam.o pam_src/caml_pam.o /usr/bin/ocamlmklib.opt -o pplacer_src/pplacercside pplacer_src/linear_c.o pplacer_src/unix_support.o ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pplacer.ml > pplacer_src/pplacer.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/check.ml > pplacer_src/check.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/ppatteries.ml > common_src/ppatteries.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/algMap.ml > common_src/algMap.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/mapsSets.ml > common_src/mapsSets.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/ppr.ml > common_src/ppr.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/ppr.cmo common_src/ppr.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/number.ml > common_src/number.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/mapsSets.cmo common_src/mapsSets.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/number.cmo common_src/number.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/algMap.cmo common_src/algMap.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/ppatteries.cmo common_src/ppatteries.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pplacer_run.ml > pplacer_src/pplacer_run.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/alignment.ml > common_src/alignment.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/fasta.ml > pplacer_src/fasta.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/refpkg_parse.ml > pplacer_src/refpkg_parse.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/json.ml > json_src/json.ml.depends /usr/bin/ocamllex.opt -q json_src/jsonlex.mll ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/jsonlex.ml > json_src/jsonlex.ml.depends /usr/bin/ocamlyacc json_src/jsonparse.mly ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/jsonparse.mli > json_src/jsonparse.mli.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/jsontype.ml > json_src/jsontype.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/jsontype.cmo json_src/jsontype.ml ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/jsonparse.cmi json_src/jsonparse.mli ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/jsonlex.cmo json_src/jsonlex.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/simple_json.ml > pplacer_src/simple_json.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/json.cmo json_src/json.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/simple_json.cmo pplacer_src/simple_json.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/refpkg_parse.cmo pplacer_src/refpkg_parse.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/linear_utils.ml > common_src/linear_utils.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/nuc_models.ml > pplacer_src/nuc_models.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/prot_models.ml > pplacer_src/prot_models.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/linear_utils.cmo common_src/linear_utils.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/stockholm.ml > pplacer_src/stockholm.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/fasta.cmo pplacer_src/fasta.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/nuc_models.cmo pplacer_src/nuc_models.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/prot_models.cmo pplacer_src/prot_models.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/stockholm.cmo pplacer_src/stockholm.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/check.cmo pplacer_src/check.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/classif_map.ml > pplacer_src/classif_map.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/edge_painting.ml > pplacer_src/edge_painting.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/convex.mli > pplacer_src/convex.mli.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/refpkg.ml > pplacer_src/refpkg.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/alignment.cmo common_src/alignment.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/decor.ml > pplacer_src/decor.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/myxml.ml > pplacer_src/myxml.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_id.ml > pplacer_src/tax_id.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/myxml.cmo pplacer_src/myxml.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/sql.ml > common_src/sql.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/sql.cmo common_src/sql.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_id.cmo pplacer_src/tax_id.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/decor_gtree.ml > pplacer_src/decor_gtree.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/decor.cmo pplacer_src/decor.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/decor_bark.ml > pplacer_src/decor_bark.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_bark.ml > pplacer_src/newick_bark.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_bark.cmo pplacer_src/newick_bark.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gtree.ml > pplacer_src/gtree.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/bark_map.ml > pplacer_src/bark_map.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/stree.ml > pplacer_src/stree.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/bark_map.cmo pplacer_src/bark_map.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/stree.cmo pplacer_src/stree.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/stree.cmo pplacer_src/stree.ml File "pplacer_src/stree.ml", line 35, characters 12-16: 35 | | Failure "tl" -> invalid_arg "nonroot_node_ids" ^^^^ Warning 52: Code should not depend on the actual values of this constructor's arguments. They are only for information and may change in future versions. (See manual section 9.5) ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_gtree.ml > pplacer_src/newick_gtree.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/file_parsing.ml > common_src/file_parsing.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gtree.cmo pplacer_src/gtree.ml /usr/bin/ocamllex.opt -q pplacer_src/newick_lexer.mll ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_lexer.ml > pplacer_src/newick_lexer.ml.depends /usr/bin/ocamlyacc pplacer_src/newick_parser.mly ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_parser.mli > pplacer_src/newick_parser.mli.depends ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_parser.cmi pplacer_src/newick_parser.mli ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_parse_state.ml > pplacer_src/newick_parse_state.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/placement.ml > pplacer_src/placement.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pquery.ml > pplacer_src/pquery.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/placement.cmo pplacer_src/placement.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pquery_io.ml > pplacer_src/pquery_io.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pquery.cmo pplacer_src/pquery.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/file_parsing.cmo common_src/file_parsing.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_lexer.cmo pplacer_src/newick_lexer.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_parse_state.cmo pplacer_src/newick_parse_state.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pquery_io.cmo pplacer_src/pquery_io.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/decor_bark.cmo pplacer_src/decor_bark.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_gtree.cmo pplacer_src/newick_gtree.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/delayed.ml > common_src/delayed.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gcat_model.ml > pplacer_src/gcat_model.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/diagd.ml > pplacer_src/diagd.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/linear.ml > pplacer_src/linear.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tensor.ml > pplacer_src/tensor.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/matrix.mli > pplacer_src/matrix.mli.depends ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/matrix.cmi pplacer_src/matrix.mli ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tensor.cmo pplacer_src/tensor.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/linear.cmo pplacer_src/linear.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/glv_arr.ml > pplacer_src/glv_arr.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/glvm.ml > pplacer_src/glvm.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/glvm.cmo pplacer_src/glvm.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/glv_edge.ml > pplacer_src/glv_edge.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gstar_support.ml > pplacer_src/gstar_support.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/like_stree.ml > pplacer_src/like_stree.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/glv_arr.cmo pplacer_src/glv_arr.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/diagd.cmo pplacer_src/diagd.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/glv_edge.cmo pplacer_src/glv_edge.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gstar_support.cmo pplacer_src/gstar_support.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/like_stree.cmo pplacer_src/like_stree.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gmix_model.ml > pplacer_src/gmix_model.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gamma.ml > pplacer_src/gamma.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/parse_stats.ml > pplacer_src/parse_stats.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/prefs.ml > pplacer_src/prefs.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/subcommand.ml > common_src/subcommand.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/batchfile.ml > common_src/batchfile.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/batchfile.cmo common_src/batchfile.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/subcommand.cmo common_src/subcommand.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/subcommand.cmo common_src/subcommand.ml File "common_src/subcommand.ml", line 201, characters 52-65: 201 | (fun x -> f.value := Some (fv ~default:[] f @ String.nsplit x delimiter))) ^^^^^^^^^^^^^ Alert deprecated: Ppatteries.String.nsplit Use split_on_string instead. ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/prefs.cmo pplacer_src/prefs.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gamma.cmo pplacer_src/gamma.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/parse_stats.cmo pplacer_src/parse_stats.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/placerun.ml > pplacer_src/placerun.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_classify.ml > pplacer_src/tax_classify.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/placerun.cmo pplacer_src/placerun.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_map.ml > pplacer_src/tax_map.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_seqinfo.ml > pplacer_src/tax_seqinfo.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_taxonomy.ml > pplacer_src/tax_taxonomy.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_seqinfo.cmo pplacer_src/tax_seqinfo.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_seqinfo.cmo pplacer_src/tax_seqinfo.ml File "pplacer_src/tax_seqinfo.ml", line 53, characters 16-27: 53 | | Failure "check_add" -> ^^^^^^^^^^^ Warning 52: Code should not depend on the actual values of this constructor's arguments. They are only for information and may change in future versions. (See manual section 9.5) ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_taxonomy.cmo pplacer_src/tax_taxonomy.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/decor_gtree.cmo pplacer_src/decor_gtree.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/delayed.cmo common_src/delayed.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gcat_model.cmo pplacer_src/gcat_model.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gmix_model.cmo pplacer_src/gmix_model.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_classify.cmo pplacer_src/tax_classify.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_map.cmo pplacer_src/tax_map.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/refpkg.cmo pplacer_src/refpkg.ml ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/convex.cmi pplacer_src/convex.mli ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/edge_painting.cmo pplacer_src/edge_painting.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/core.ml > pplacer_src/core.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/fig.mli > pplacer_src/fig.mli.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/minimization.ml > pplacer_src/minimization.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/three_tax.ml > pplacer_src/three_tax.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/integration.ml > pplacer_src/integration.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/minimization.cmo pplacer_src/minimization.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/integration.cmo pplacer_src/integration.ml ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/fig.cmi pplacer_src/fig.mli ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/three_tax.cmo pplacer_src/three_tax.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/fantasy.ml > pplacer_src/fantasy.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/string_matrix.ml > pplacer_src/string_matrix.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/string_matrix.cmo pplacer_src/string_matrix.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/map_seq.ml > pplacer_src/map_seq.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/seq_post.ml > pplacer_src/seq_post.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/seq_post.cmo pplacer_src/seq_post.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/multiprocessing.mli > pplacer_src/multiprocessing.mli.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/phyloxml.ml > pplacer_src/phyloxml.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/placerun_io.ml > pplacer_src/placerun_io.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/biom.ml > pplacer_src/biom.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/version.ml > common_src/version.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/biom.cmo pplacer_src/biom.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/version.cmo common_src/version.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/seq_group.ml > pplacer_src/seq_group.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/classif_map.cmo pplacer_src/classif_map.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/core.cmo pplacer_src/core.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/fantasy.cmo pplacer_src/fantasy.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/map_seq.cmo pplacer_src/map_seq.ml ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/multiprocessing.cmi pplacer_src/multiprocessing.mli ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/phyloxml.cmo pplacer_src/phyloxml.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/placerun_io.cmo pplacer_src/placerun_io.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/seq_group.cmo pplacer_src/seq_group.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pplacer_run.cmo pplacer_src/pplacer_run.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pplacer.cmo pplacer_src/pplacer.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/ppr.cmx common_src/ppr.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/mapsSets.cmx common_src/mapsSets.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/number.cmx common_src/number.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/algMap.cmx common_src/algMap.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/ppatteries.cmx common_src/ppatteries.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/jsonparse.ml > json_src/jsonparse.ml.depends ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/jsontype.cmx json_src/jsontype.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/jsonparse.cmx json_src/jsonparse.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/jsonlex.cmx json_src/jsonlex.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/json.cmx json_src/json.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/simple_json.cmx pplacer_src/simple_json.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/refpkg_parse.cmx pplacer_src/refpkg_parse.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/linear_utils.cmx common_src/linear_utils.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/fasta.cmx pplacer_src/fasta.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/nuc_models.cmx pplacer_src/nuc_models.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/prot_models.cmx pplacer_src/prot_models.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/stockholm.cmx pplacer_src/stockholm.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/check.cmx pplacer_src/check.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/convex.ml > pplacer_src/convex.ml.depends ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/myxml.cmx pplacer_src/myxml.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_bark.cmx pplacer_src/newick_bark.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/bark_map.cmx pplacer_src/bark_map.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/stree.cmx pplacer_src/stree.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/stree.cmx pplacer_src/stree.ml File "pplacer_src/stree.ml", line 35, characters 12-16: 35 | | Failure "tl" -> invalid_arg "nonroot_node_ids" ^^^^ Warning 52: Code should not depend on the actual values of this constructor's arguments. They are only for information and may change in future versions. (See manual section 9.5) ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/alignment.cmx common_src/alignment.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/sql.cmx common_src/sql.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_id.cmx pplacer_src/tax_id.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/decor.cmx pplacer_src/decor.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gtree.cmx pplacer_src/gtree.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_parser.ml > pplacer_src/newick_parser.ml.depends ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_parse_state.cmx pplacer_src/newick_parse_state.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_parser.cmx pplacer_src/newick_parser.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/placement.cmx pplacer_src/placement.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pquery.cmx pplacer_src/pquery.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/file_parsing.cmx common_src/file_parsing.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_lexer.cmx pplacer_src/newick_lexer.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pquery_io.cmx pplacer_src/pquery_io.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/decor_bark.cmx pplacer_src/decor_bark.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_gtree.cmx pplacer_src/newick_gtree.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/matrix.ml > pplacer_src/matrix.ml.depends ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/matrix.cmx pplacer_src/matrix.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tensor.cmx pplacer_src/tensor.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/linear.cmx pplacer_src/linear.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/glvm.cmx pplacer_src/glvm.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/glv_arr.cmx pplacer_src/glv_arr.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/diagd.cmx pplacer_src/diagd.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/glv_edge.cmx pplacer_src/glv_edge.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gstar_support.cmx pplacer_src/gstar_support.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/like_stree.cmx pplacer_src/like_stree.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/batchfile.cmx common_src/batchfile.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/subcommand.cmx common_src/subcommand.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/subcommand.cmx common_src/subcommand.ml File "common_src/subcommand.ml", line 201, characters 52-65: 201 | (fun x -> f.value := Some (fv ~default:[] f @ String.nsplit x delimiter))) ^^^^^^^^^^^^^ Alert deprecated: Ppatteries.String.nsplit Use split_on_string instead. ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/prefs.cmx pplacer_src/prefs.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gamma.cmx pplacer_src/gamma.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/parse_stats.cmx pplacer_src/parse_stats.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/placerun.cmx pplacer_src/placerun.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_seqinfo.cmx pplacer_src/tax_seqinfo.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_seqinfo.cmx pplacer_src/tax_seqinfo.ml File "pplacer_src/tax_seqinfo.ml", line 53, characters 16-27: 53 | | Failure "check_add" -> ^^^^^^^^^^^ Warning 52: Code should not depend on the actual values of this constructor's arguments. They are only for information and may change in future versions. (See manual section 9.5) ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_taxonomy.cmx pplacer_src/tax_taxonomy.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/decor_gtree.cmx pplacer_src/decor_gtree.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/delayed.cmx common_src/delayed.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gcat_model.cmx pplacer_src/gcat_model.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gmix_model.cmx pplacer_src/gmix_model.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_classify.cmx pplacer_src/tax_classify.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_map.cmx pplacer_src/tax_map.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/refpkg.cmx pplacer_src/refpkg.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/convex.cmx pplacer_src/convex.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/edge_painting.cmx pplacer_src/edge_painting.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/fig.ml > pplacer_src/fig.ml.depends ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/minimization.cmx pplacer_src/minimization.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/integration.cmx pplacer_src/integration.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/fig.cmx pplacer_src/fig.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/three_tax.cmx pplacer_src/three_tax.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/string_matrix.cmx pplacer_src/string_matrix.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/seq_post.cmx pplacer_src/seq_post.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/multiprocessing.ml > pplacer_src/multiprocessing.ml.depends ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/biom.cmx pplacer_src/biom.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/version.cmx common_src/version.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/classif_map.cmx pplacer_src/classif_map.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/core.cmx pplacer_src/core.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/fantasy.cmx pplacer_src/fantasy.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/map_seq.cmx pplacer_src/map_seq.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/multiprocessing.cmx pplacer_src/multiprocessing.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/phyloxml.cmx pplacer_src/phyloxml.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/placerun_io.cmx pplacer_src/placerun_io.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/seq_group.cmx pplacer_src/seq_group.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pplacer_run.cmx pplacer_src/pplacer_run.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pplacer.cmx pplacer_src/pplacer.ml ocamlfind ocamlopt -linkpkg -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -cclib -lpthread -cclib -limpala -cclib -lpplacercside -cclib -Lpplacer_src -cclib -lcdd -cclib -Lcdd_src -cclib -lpplacer_pam -cclib -Lpam_src -cclib -lgsl -I common_src -I json_src -I pplacer_src -I cdd_src -I pam_src common_src/ppr.cmx common_src/mapsSets.cmx common_src/number.cmx common_src/algMap.cmx common_src/ppatteries.cmx common_src/linear_utils.cmx json_src/jsontype.cmx json_src/jsonparse.cmx json_src/jsonlex.cmx json_src/json.cmx pplacer_src/simple_json.cmx pplacer_src/refpkg_parse.cmx pplacer_src/fasta.cmx pplacer_src/nuc_models.cmx pplacer_src/prot_models.cmx pplacer_src/stockholm.cmx common_src/alignment.cmx common_src/batchfile.cmx common_src/delayed.cmx common_src/file_parsing.cmx common_src/sql.cmx common_src/subcommand.cmx common_src/version.cmx pplacer_src/myxml.cmx pplacer_src/newick_bark.cmx pplacer_src/bark_map.cmx pplacer_src/stree.cmx pplacer_src/gtree.cmx pplacer_src/newick_parse_state.cmx pplacer_src/newick_parser.cmx pplacer_src/newick_lexer.cmx pplacer_src/tax_id.cmx pplacer_src/placement.cmx pplacer_src/pquery.cmx pplacer_src/pquery_io.cmx pplacer_src/newick_gtree.cmx pplacer_src/placerun.cmx pplacer_src/biom.cmx pplacer_src/check.cmx pplacer_src/decor.cmx pplacer_src/decor_bark.cmx pplacer_src/decor_gtree.cmx pplacer_src/matrix.cmx pplacer_src/tensor.cmx pplacer_src/linear.cmx pplacer_src/diagd.cmx pplacer_src/gamma.cmx pplacer_src/glvm.cmx pplacer_src/glv_arr.cmx pplacer_src/glv_edge.cmx pplacer_src/gstar_support.cmx pplacer_src/like_stree.cmx pplacer_src/gcat_model.cmx pplacer_src/prefs.cmx pplacer_src/parse_stats.cmx pplacer_src/gmix_model.cmx pplacer_src/tax_classify.cmx pplacer_src/tax_seqinfo.cmx pplacer_src/tax_taxonomy.cmx pplacer_src/tax_map.cmx pplacer_src/refpkg.cmx pplacer_src/convex.cmx pplacer_src/edge_painting.cmx pplacer_src/classif_map.cmx pplacer_src/fig.cmx pplacer_src/integration.cmx pplacer_src/minimization.cmx pplacer_src/three_tax.cmx pplacer_src/core.cmx pplacer_src/string_matrix.cmx pplacer_src/fantasy.cmx pplacer_src/seq_post.cmx pplacer_src/map_seq.cmx pplacer_src/multiprocessing.cmx pplacer_src/phyloxml.cmx pplacer_src/placerun_io.cmx pplacer_src/seq_group.cmx pplacer_src/pplacer_run.cmx pplacer_src/pplacer.cmx cdd_src/libcdd.a pam_src/libpplacer_pam.a pplacer_src/libpplacercside.a -o pplacer_src/pplacer.native make[3]: Leaving directory '/build/pplacer-hsLaGT/pplacer-1.1-alpha19' cp `readlink pplacer.native` bin/pplacer rm pplacer.native if [ ! -e bin ]; then mkdir bin; fi make guppy.native make[3]: Entering directory '/build/pplacer-hsLaGT/pplacer-1.1-alpha19' ocamlbuild guppy.native /bin/sh: 1: git: not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: Warning: the tag "pkg_bigarray" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 102-110: Warning: the tag "pkg_unix" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy.ml > pplacer_src/guppy.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_commands.ml > pplacer_src/guppy_commands.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_adcl.ml > pplacer_src/guppy_adcl.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_cmdobjs.ml > pplacer_src/guppy_cmdobjs.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mass_map.ml > pplacer_src/mass_map.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mokaphy_common.ml > pplacer_src/mokaphy_common.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_mass.ml > pplacer_src/tax_mass.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_map.cmo pplacer_src/mass_map.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/uptri.ml > common_src/uptri.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_mass.cmo pplacer_src/tax_mass.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/uptri.cmo common_src/uptri.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/visualization.ml > pplacer_src/visualization.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/voronoi.mli > pplacer_src/voronoi.mli.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mokaphy_common.cmo pplacer_src/mokaphy_common.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/visualization.cmo pplacer_src/visualization.ml ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/voronoi.cmi pplacer_src/voronoi.mli ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_cmdobjs.cmo pplacer_src/guppy_cmdobjs.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_bary.ml > pplacer_src/guppy_bary.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/barycenter.ml > pplacer_src/barycenter.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/kr_distance.ml > pplacer_src/kr_distance.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/kr_distance.cmo pplacer_src/kr_distance.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/barycenter.cmo pplacer_src/barycenter.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_check.ml > pplacer_src/guppy_check.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_classify.ml > pplacer_src/guppy_classify.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/bayes_factor.ml > pplacer_src/bayes_factor.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_to_rdp.ml > pplacer_src/guppy_to_rdp.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/nbc.mli > pplacer_src/nbc.mli.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/bayes_factor.cmo pplacer_src/bayes_factor.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_to_rdp.cmo pplacer_src/guppy_to_rdp.ml ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/nbc.cmi pplacer_src/nbc.mli ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_compress.ml > pplacer_src/guppy_compress.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_mcl.ml > pplacer_src/guppy_mcl.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mass_overlap.ml > pplacer_src/mass_overlap.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_overlap.cmo pplacer_src/mass_overlap.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mass_compress.ml > pplacer_src/mass_compress.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mass_islands.ml > pplacer_src/mass_islands.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_mcl.cmo pplacer_src/guppy_mcl.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_compress.cmo pplacer_src/mass_compress.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_islands.cmo pplacer_src/mass_islands.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_demulti.ml > pplacer_src/guppy_demulti.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_distmat.ml > pplacer_src/guppy_distmat.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/edge_rdist.ml > pplacer_src/edge_rdist.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/edge_rdist.cmo pplacer_src/edge_rdist.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_edpl.ml > pplacer_src/guppy_edpl.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/edpl.ml > pplacer_src/edpl.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/edpl.cmo pplacer_src/edpl.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_epca.ml > pplacer_src/guppy_epca.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_pca.ml > pplacer_src/guppy_pca.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_splitify.ml > pplacer_src/guppy_splitify.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_splitify.cmo pplacer_src/guppy_splitify.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pca.ml > pplacer_src/pca.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/power_iteration.ml > common_src/power_iteration.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/power_iteration.cmo common_src/power_iteration.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/som.ml > pplacer_src/som.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pca.cmo pplacer_src/pca.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_pca.cmo pplacer_src/guppy_pca.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/som.cmo pplacer_src/som.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_error.ml > pplacer_src/guppy_error.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_fat.ml > pplacer_src/guppy_fat.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_gtree.ml > pplacer_src/tax_gtree.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_gtree.cmo pplacer_src/tax_gtree.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_filter.ml > pplacer_src/guppy_filter.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_classify.cmo pplacer_src/guppy_classify.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_classify.cmo pplacer_src/guppy_classify.ml File "pplacer_src/guppy_classify.ml", line 683, characters 20-33: 683 | let splut = String.nsplit line "\t" |> Array.of_list in ^^^^^^^^^^^^^ Alert deprecated: Ppatteries.String.nsplit Use split_on_string instead. ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_fpd.ml > pplacer_src/guppy_fpd.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_heat.ml > pplacer_src/guppy_heat.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_indep_c.ml > pplacer_src/guppy_indep_c.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/indep_contrasts.ml > pplacer_src/indep_contrasts.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/indep_contrasts.cmo pplacer_src/indep_contrasts.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_info.ml > pplacer_src/guppy_info.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_islands.ml > pplacer_src/guppy_islands.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_kr.ml > pplacer_src/guppy_kr.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gaussian_approx.ml > pplacer_src/gaussian_approx.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/r_plots.ml > pplacer_src/r_plots.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gaussian_approx.cmo pplacer_src/gaussian_approx.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/r_plots.cmo pplacer_src/r_plots.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_kr_heat.ml > pplacer_src/guppy_kr_heat.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_lpca.ml > pplacer_src/guppy_lpca.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/lpca.ml > pplacer_src/lpca.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/lpca.cmo pplacer_src/lpca.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_merge.ml > pplacer_src/guppy_merge.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_mft.ml > pplacer_src/guppy_mft.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_ograph.ml > pplacer_src/guppy_ograph.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_placemat.ml > pplacer_src/guppy_placemat.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_pmlpca.ml > pplacer_src/guppy_pmlpca.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_rarefact.ml > pplacer_src/guppy_rarefact.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rarefaction.ml > pplacer_src/rarefaction.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rarefaction.cmo pplacer_src/rarefaction.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_rarefy.ml > pplacer_src/guppy_rarefy.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_redup.ml > pplacer_src/guppy_redup.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_round.ml > pplacer_src/guppy_round.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_sing.ml > pplacer_src/guppy_sing.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_squash.ml > pplacer_src/guppy_squash.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/bootstrap.ml > pplacer_src/bootstrap.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_round.cmo pplacer_src/guppy_round.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/squashfunc.ml > pplacer_src/squashfunc.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/bootstrap.cmo pplacer_src/bootstrap.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/squashfunc.cmo pplacer_src/squashfunc.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_to_csv.ml > pplacer_src/guppy_to_csv.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_to_json.ml > pplacer_src/guppy_to_json.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_tog.ml > pplacer_src/guppy_tog.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_trim.ml > pplacer_src/guppy_trim.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_unifrac.ml > pplacer_src/guppy_unifrac.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_adcl.cmo pplacer_src/guppy_adcl.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_bary.cmo pplacer_src/guppy_bary.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_check.cmo pplacer_src/guppy_check.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_compress.cmo pplacer_src/guppy_compress.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_demulti.cmo pplacer_src/guppy_demulti.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_distmat.cmo pplacer_src/guppy_distmat.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_edpl.cmo pplacer_src/guppy_edpl.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_epca.cmo pplacer_src/guppy_epca.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_error.cmo pplacer_src/guppy_error.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_fat.cmo pplacer_src/guppy_fat.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_filter.cmo pplacer_src/guppy_filter.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_fpd.cmo pplacer_src/guppy_fpd.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_heat.cmo pplacer_src/guppy_heat.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_indep_c.cmo pplacer_src/guppy_indep_c.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_info.cmo pplacer_src/guppy_info.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_islands.cmo pplacer_src/guppy_islands.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_kr.cmo pplacer_src/guppy_kr.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_kr_heat.cmo pplacer_src/guppy_kr_heat.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_lpca.cmo pplacer_src/guppy_lpca.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_merge.cmo pplacer_src/guppy_merge.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_mft.cmo pplacer_src/guppy_mft.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_ograph.cmo pplacer_src/guppy_ograph.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_placemat.cmo pplacer_src/guppy_placemat.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_pmlpca.cmo pplacer_src/guppy_pmlpca.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_rarefact.cmo pplacer_src/guppy_rarefact.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_rarefy.cmo pplacer_src/guppy_rarefy.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_redup.cmo pplacer_src/guppy_redup.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_sing.cmo pplacer_src/guppy_sing.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_squash.cmo pplacer_src/guppy_squash.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_to_csv.cmo pplacer_src/guppy_to_csv.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_to_json.cmo pplacer_src/guppy_to_json.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_tog.cmo pplacer_src/guppy_tog.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_trim.cmo pplacer_src/guppy_trim.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_unifrac.cmo pplacer_src/guppy_unifrac.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_commands.cmo pplacer_src/guppy_commands.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy.cmo pplacer_src/guppy.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_map.cmx pplacer_src/mass_map.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_mass.cmx pplacer_src/tax_mass.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/uptri.cmx common_src/uptri.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/voronoi.ml > pplacer_src/voronoi.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules cdd_src/cdd.ml > cdd_src/cdd.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I cdd_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o cdd_src/cdd.cmo cdd_src/cdd.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pam_src/pam_solver.ml > pam_src/pam_solver.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pam_src -I tests -I pplacer_src -I pdprune_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pam_src/pam_solver.cmo pam_src/pam_solver.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/edge_rdist.cmx pplacer_src/edge_rdist.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I cdd_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o cdd_src/cdd.cmx cdd_src/cdd.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/kr_distance.cmx pplacer_src/kr_distance.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pam_src -I tests -I pplacer_src -I pdprune_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pam_src/pam_solver.cmx pam_src/pam_solver.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mokaphy_common.cmx pplacer_src/mokaphy_common.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/visualization.cmx pplacer_src/visualization.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/voronoi.cmx pplacer_src/voronoi.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_cmdobjs.cmx pplacer_src/guppy_cmdobjs.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/barycenter.cmx pplacer_src/barycenter.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/nbc.ml > pplacer_src/nbc.ml.depends ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/bayes_factor.cmx pplacer_src/bayes_factor.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_to_rdp.cmx pplacer_src/guppy_to_rdp.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/nbc.cmx pplacer_src/nbc.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_overlap.cmx pplacer_src/mass_overlap.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_mcl.cmx pplacer_src/guppy_mcl.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_compress.cmx pplacer_src/mass_compress.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_islands.cmx pplacer_src/mass_islands.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/edpl.cmx pplacer_src/edpl.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_splitify.cmx pplacer_src/guppy_splitify.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/power_iteration.cmx common_src/power_iteration.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pca.cmx pplacer_src/pca.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_pca.cmx pplacer_src/guppy_pca.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/som.cmx pplacer_src/som.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_gtree.cmx pplacer_src/tax_gtree.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_classify.cmx pplacer_src/guppy_classify.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_classify.cmx pplacer_src/guppy_classify.ml File "pplacer_src/guppy_classify.ml", line 683, characters 20-33: 683 | let splut = String.nsplit line "\t" |> Array.of_list in ^^^^^^^^^^^^^ Alert deprecated: Ppatteries.String.nsplit Use split_on_string instead. ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/indep_contrasts.cmx pplacer_src/indep_contrasts.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gaussian_approx.cmx pplacer_src/gaussian_approx.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/r_plots.cmx pplacer_src/r_plots.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/lpca.cmx pplacer_src/lpca.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rarefaction.cmx pplacer_src/rarefaction.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_round.cmx pplacer_src/guppy_round.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/bootstrap.cmx pplacer_src/bootstrap.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/squashfunc.cmx pplacer_src/squashfunc.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_adcl.cmx pplacer_src/guppy_adcl.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_bary.cmx pplacer_src/guppy_bary.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_check.cmx pplacer_src/guppy_check.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_compress.cmx pplacer_src/guppy_compress.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_demulti.cmx pplacer_src/guppy_demulti.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_distmat.cmx pplacer_src/guppy_distmat.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_edpl.cmx pplacer_src/guppy_edpl.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_epca.cmx pplacer_src/guppy_epca.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_error.cmx pplacer_src/guppy_error.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_fat.cmx pplacer_src/guppy_fat.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_filter.cmx pplacer_src/guppy_filter.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_fpd.cmx pplacer_src/guppy_fpd.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_heat.cmx pplacer_src/guppy_heat.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_indep_c.cmx pplacer_src/guppy_indep_c.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_info.cmx pplacer_src/guppy_info.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_islands.cmx pplacer_src/guppy_islands.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_kr.cmx pplacer_src/guppy_kr.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_kr_heat.cmx pplacer_src/guppy_kr_heat.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_lpca.cmx pplacer_src/guppy_lpca.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_merge.cmx pplacer_src/guppy_merge.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_mft.cmx pplacer_src/guppy_mft.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_ograph.cmx pplacer_src/guppy_ograph.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_placemat.cmx pplacer_src/guppy_placemat.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_pmlpca.cmx pplacer_src/guppy_pmlpca.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_rarefact.cmx pplacer_src/guppy_rarefact.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_rarefy.cmx pplacer_src/guppy_rarefy.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_redup.cmx pplacer_src/guppy_redup.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_sing.cmx pplacer_src/guppy_sing.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_squash.cmx pplacer_src/guppy_squash.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_to_csv.cmx pplacer_src/guppy_to_csv.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_to_json.cmx pplacer_src/guppy_to_json.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_tog.cmx pplacer_src/guppy_tog.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_trim.cmx pplacer_src/guppy_trim.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_unifrac.cmx pplacer_src/guppy_unifrac.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_commands.cmx pplacer_src/guppy_commands.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy.cmx pplacer_src/guppy.ml ocamlfind ocamlopt -linkpkg -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -cclib -lpthread -cclib -limpala -cclib -lpplacercside -cclib -Lpplacer_src -cclib -lcdd -cclib -Lcdd_src -cclib -lpplacer_pam -cclib -Lpam_src -cclib -lgsl -I cdd_src -I common_src -I json_src -I pplacer_src -I pam_src cdd_src/cdd.cmx common_src/ppr.cmx common_src/mapsSets.cmx common_src/number.cmx common_src/algMap.cmx common_src/ppatteries.cmx common_src/linear_utils.cmx json_src/jsontype.cmx json_src/jsonparse.cmx json_src/jsonlex.cmx json_src/json.cmx pplacer_src/simple_json.cmx pplacer_src/refpkg_parse.cmx pplacer_src/fasta.cmx pplacer_src/nuc_models.cmx pplacer_src/prot_models.cmx pplacer_src/stockholm.cmx common_src/alignment.cmx common_src/batchfile.cmx common_src/delayed.cmx common_src/file_parsing.cmx common_src/power_iteration.cmx common_src/sql.cmx common_src/subcommand.cmx common_src/uptri.cmx common_src/version.cmx pplacer_src/myxml.cmx pplacer_src/newick_bark.cmx pplacer_src/bark_map.cmx pplacer_src/stree.cmx pplacer_src/gtree.cmx pplacer_src/edge_rdist.cmx pplacer_src/newick_parse_state.cmx pplacer_src/newick_parser.cmx pplacer_src/newick_lexer.cmx pplacer_src/tax_id.cmx pplacer_src/placement.cmx pplacer_src/pquery.cmx pplacer_src/pquery_io.cmx pplacer_src/newick_gtree.cmx pplacer_src/placerun.cmx pplacer_src/mass_map.cmx pplacer_src/matrix.cmx pam_src/pam_solver.cmx pplacer_src/kr_distance.cmx pplacer_src/barycenter.cmx pplacer_src/decor.cmx pplacer_src/decor_bark.cmx pplacer_src/decor_gtree.cmx pplacer_src/tensor.cmx pplacer_src/linear.cmx pplacer_src/diagd.cmx pplacer_src/gamma.cmx pplacer_src/glvm.cmx pplacer_src/glv_arr.cmx pplacer_src/glv_edge.cmx pplacer_src/gstar_support.cmx pplacer_src/like_stree.cmx pplacer_src/gcat_model.cmx pplacer_src/prefs.cmx pplacer_src/parse_stats.cmx pplacer_src/gmix_model.cmx pplacer_src/tax_classify.cmx pplacer_src/tax_seqinfo.cmx pplacer_src/tax_taxonomy.cmx pplacer_src/tax_map.cmx pplacer_src/refpkg.cmx pplacer_src/convex.cmx pplacer_src/edge_painting.cmx pplacer_src/classif_map.cmx pplacer_src/bayes_factor.cmx pplacer_src/biom.cmx pplacer_src/bootstrap.cmx pplacer_src/check.cmx pplacer_src/fig.cmx pplacer_src/integration.cmx pplacer_src/minimization.cmx pplacer_src/three_tax.cmx pplacer_src/core.cmx pplacer_src/edpl.cmx pplacer_src/string_matrix.cmx pplacer_src/fantasy.cmx pplacer_src/gaussian_approx.cmx pplacer_src/tax_mass.cmx pplacer_src/mokaphy_common.cmx pplacer_src/phyloxml.cmx pplacer_src/placerun_io.cmx pplacer_src/visualization.cmx pplacer_src/voronoi.cmx pplacer_src/guppy_cmdobjs.cmx pplacer_src/guppy_adcl.cmx pplacer_src/guppy_bary.cmx pplacer_src/guppy_check.cmx pplacer_src/guppy_to_rdp.cmx pplacer_src/seq_post.cmx pplacer_src/map_seq.cmx pplacer_src/multiprocessing.cmx pplacer_src/nbc.cmx pplacer_src/seq_group.cmx pplacer_src/pplacer_run.cmx pplacer_src/guppy_classify.cmx pplacer_src/mass_overlap.cmx pplacer_src/guppy_mcl.cmx pplacer_src/mass_compress.cmx pplacer_src/mass_islands.cmx pplacer_src/guppy_compress.cmx pplacer_src/guppy_demulti.cmx pplacer_src/guppy_distmat.cmx pplacer_src/guppy_edpl.cmx pplacer_src/guppy_splitify.cmx pplacer_src/guppy_pca.cmx pplacer_src/pca.cmx pplacer_src/som.cmx pplacer_src/guppy_epca.cmx pplacer_src/guppy_error.cmx pplacer_src/tax_gtree.cmx pplacer_src/guppy_fat.cmx pplacer_src/guppy_filter.cmx pplacer_src/guppy_fpd.cmx pplacer_src/guppy_heat.cmx pplacer_src/indep_contrasts.cmx pplacer_src/guppy_indep_c.cmx pplacer_src/guppy_info.cmx pplacer_src/guppy_islands.cmx pplacer_src/r_plots.cmx pplacer_src/guppy_kr.cmx pplacer_src/guppy_kr_heat.cmx pplacer_src/lpca.cmx pplacer_src/guppy_lpca.cmx pplacer_src/guppy_merge.cmx pplacer_src/guppy_mft.cmx pplacer_src/guppy_ograph.cmx pplacer_src/guppy_placemat.cmx pplacer_src/guppy_pmlpca.cmx pplacer_src/rarefaction.cmx pplacer_src/guppy_rarefact.cmx pplacer_src/guppy_rarefy.cmx pplacer_src/guppy_redup.cmx pplacer_src/guppy_round.cmx pplacer_src/guppy_sing.cmx pplacer_src/squashfunc.cmx pplacer_src/guppy_squash.cmx pplacer_src/guppy_to_csv.cmx pplacer_src/guppy_to_json.cmx pplacer_src/guppy_tog.cmx pplacer_src/guppy_trim.cmx pplacer_src/guppy_unifrac.cmx pplacer_src/guppy_commands.cmx pplacer_src/guppy.cmx cdd_src/libcdd.a pam_src/libpplacer_pam.a pplacer_src/libpplacercside.a -o pplacer_src/guppy.native make[3]: Leaving directory '/build/pplacer-hsLaGT/pplacer-1.1-alpha19' cp `readlink guppy.native` bin/guppy rm guppy.native if [ ! -e bin ]; then mkdir bin; fi make rppr.native make[3]: Entering directory '/build/pplacer-hsLaGT/pplacer-1.1-alpha19' ocamlbuild rppr.native /bin/sh: 1: git: not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: Warning: the tag "pkg_bigarray" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 102-110: Warning: the tag "pkg_unix" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr.ml > pplacer_src/rppr.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_commands.ml > pplacer_src/rppr_commands.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_check.ml > pplacer_src/rppr_check.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_convex_taxids.ml > pplacer_src/rppr_convex_taxids.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_convexify.ml > pplacer_src/rppr_convexify.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_infer.ml > pplacer_src/rppr_infer.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_info.ml > pplacer_src/rppr_info.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_min_adcl.ml > pplacer_src/rppr_min_adcl.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_min_adcl_tree.ml > pplacer_src/rppr_min_adcl_tree.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pdprune_src/rppr_pdprune.ml > pdprune_src/rppr_pdprune.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pdprune_src/pd.ml > pdprune_src/pd.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pdprune_src/ptree.ml > pdprune_src/ptree.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I tests -I pplacer_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pdprune_src/ptree.cmo pdprune_src/ptree.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I tests -I pplacer_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pdprune_src/pd.cmo pdprune_src/pd.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_prep_db.ml > pplacer_src/rppr_prep_db.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_prepsim.ml > pplacer_src/rppr_prepsim.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_reclass.ml > pplacer_src/rppr_reclass.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_infer.cmo pplacer_src/rppr_infer.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_ref_tree.ml > pplacer_src/rppr_ref_tree.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_reroot.ml > pplacer_src/rppr_reroot.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_check.cmo pplacer_src/rppr_check.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_convex_taxids.cmo pplacer_src/rppr_convex_taxids.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_convexify.cmo pplacer_src/rppr_convexify.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_info.cmo pplacer_src/rppr_info.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_min_adcl.cmo pplacer_src/rppr_min_adcl.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_min_adcl_tree.cmo pplacer_src/rppr_min_adcl_tree.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I tests -I pplacer_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pdprune_src/rppr_pdprune.cmo pdprune_src/rppr_pdprune.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_prep_db.cmo pplacer_src/rppr_prep_db.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_prepsim.cmo pplacer_src/rppr_prepsim.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_reclass.cmo pplacer_src/rppr_reclass.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_ref_tree.cmo pplacer_src/rppr_ref_tree.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_reroot.cmo pplacer_src/rppr_reroot.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_commands.cmo pplacer_src/rppr_commands.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr.cmo pplacer_src/rppr.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I tests -I pplacer_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pdprune_src/ptree.cmx pdprune_src/ptree.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I tests -I pplacer_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pdprune_src/pd.cmx pdprune_src/pd.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_infer.cmx pplacer_src/rppr_infer.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_check.cmx pplacer_src/rppr_check.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_convex_taxids.cmx pplacer_src/rppr_convex_taxids.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_convexify.cmx pplacer_src/rppr_convexify.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_info.cmx pplacer_src/rppr_info.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_min_adcl.cmx pplacer_src/rppr_min_adcl.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_min_adcl_tree.cmx pplacer_src/rppr_min_adcl_tree.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I tests -I pplacer_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pdprune_src/rppr_pdprune.cmx pdprune_src/rppr_pdprune.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_prep_db.cmx pplacer_src/rppr_prep_db.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_prepsim.cmx pplacer_src/rppr_prepsim.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_reclass.cmx pplacer_src/rppr_reclass.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_ref_tree.cmx pplacer_src/rppr_ref_tree.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_reroot.cmx pplacer_src/rppr_reroot.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_commands.cmx pplacer_src/rppr_commands.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr.cmx pplacer_src/rppr.ml ocamlfind ocamlopt -linkpkg -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -cclib -lpthread -cclib -limpala -cclib -lpplacercside -cclib -Lpplacer_src -cclib -lcdd -cclib -Lcdd_src -cclib -lpplacer_pam -cclib -Lpam_src -cclib -lgsl -I cdd_src -I common_src -I json_src -I pplacer_src -I pam_src -I pdprune_src cdd_src/cdd.cmx common_src/ppr.cmx common_src/mapsSets.cmx common_src/number.cmx common_src/algMap.cmx common_src/ppatteries.cmx common_src/linear_utils.cmx json_src/jsontype.cmx json_src/jsonparse.cmx json_src/jsonlex.cmx json_src/json.cmx pplacer_src/simple_json.cmx pplacer_src/refpkg_parse.cmx pplacer_src/fasta.cmx pplacer_src/nuc_models.cmx pplacer_src/prot_models.cmx pplacer_src/stockholm.cmx common_src/alignment.cmx common_src/batchfile.cmx common_src/delayed.cmx common_src/file_parsing.cmx common_src/sql.cmx common_src/subcommand.cmx common_src/uptri.cmx common_src/version.cmx pplacer_src/myxml.cmx pplacer_src/newick_bark.cmx pplacer_src/bark_map.cmx pplacer_src/stree.cmx pplacer_src/gtree.cmx pplacer_src/edge_rdist.cmx pplacer_src/newick_parse_state.cmx pplacer_src/newick_parser.cmx pplacer_src/newick_lexer.cmx pplacer_src/tax_id.cmx pplacer_src/placement.cmx pplacer_src/pquery.cmx pplacer_src/pquery_io.cmx pplacer_src/newick_gtree.cmx pplacer_src/placerun.cmx pplacer_src/mass_map.cmx pplacer_src/matrix.cmx pam_src/pam_solver.cmx pdprune_src/ptree.cmx pdprune_src/pd.cmx pplacer_src/biom.cmx pplacer_src/decor.cmx pplacer_src/decor_bark.cmx pplacer_src/decor_gtree.cmx pplacer_src/tensor.cmx pplacer_src/linear.cmx pplacer_src/diagd.cmx pplacer_src/gamma.cmx pplacer_src/glvm.cmx pplacer_src/glv_arr.cmx pplacer_src/glv_edge.cmx pplacer_src/gstar_support.cmx pplacer_src/like_stree.cmx pplacer_src/gcat_model.cmx pplacer_src/prefs.cmx pplacer_src/parse_stats.cmx pplacer_src/gmix_model.cmx pplacer_src/kr_distance.cmx pplacer_src/string_matrix.cmx pplacer_src/tax_mass.cmx pplacer_src/mokaphy_common.cmx pplacer_src/phyloxml.cmx pplacer_src/placerun_io.cmx pplacer_src/tax_classify.cmx pplacer_src/tax_seqinfo.cmx pplacer_src/tax_taxonomy.cmx pplacer_src/tax_map.cmx pplacer_src/refpkg.cmx pplacer_src/visualization.cmx pplacer_src/voronoi.cmx pplacer_src/guppy_cmdobjs.cmx pdprune_src/rppr_pdprune.cmx pplacer_src/check.cmx pplacer_src/convex.cmx pplacer_src/edge_painting.cmx pplacer_src/classif_map.cmx pplacer_src/fig.cmx pplacer_src/integration.cmx pplacer_src/minimization.cmx pplacer_src/three_tax.cmx pplacer_src/core.cmx pplacer_src/fantasy.cmx pplacer_src/seq_post.cmx pplacer_src/map_seq.cmx pplacer_src/multiprocessing.cmx pplacer_src/seq_group.cmx pplacer_src/pplacer_run.cmx pplacer_src/rppr_check.cmx pplacer_src/rppr_convex_taxids.cmx pplacer_src/rppr_convexify.cmx pplacer_src/rppr_infer.cmx pplacer_src/rppr_info.cmx pplacer_src/rppr_min_adcl.cmx pplacer_src/rppr_min_adcl_tree.cmx pplacer_src/rppr_prep_db.cmx pplacer_src/rppr_prepsim.cmx pplacer_src/rppr_reclass.cmx pplacer_src/tax_gtree.cmx pplacer_src/rppr_ref_tree.cmx pplacer_src/rppr_reroot.cmx pplacer_src/rppr_commands.cmx pplacer_src/rppr.cmx cdd_src/libcdd.a pam_src/libpplacer_pam.a pplacer_src/libpplacercside.a -o pplacer_src/rppr.native make[3]: Leaving directory '/build/pplacer-hsLaGT/pplacer-1.1-alpha19' cp `readlink rppr.native` bin/rppr rm rppr.native make[2]: Leaving directory '/build/pplacer-hsLaGT/pplacer-1.1-alpha19' make[1]: Leaving directory '/build/pplacer-hsLaGT/pplacer-1.1-alpha19' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/pplacer/ -a dh_install -a dh_ocamldoc -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_ocaml -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'pplacer' in '../pplacer_1.1~alpha19-6_amd64.deb'. dpkg-deb: building package 'pplacer-dbgsym' in '../pplacer-dbgsym_1.1~alpha19-6_amd64.deb'. dpkg-genbuildinfo --build=any -O../pplacer_1.1~alpha19-6_amd64.buildinfo dpkg-genchanges --build=any -O../pplacer_1.1~alpha19-6_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/pplacer-hsLaGT /tmp/pplacer-1.1~alpha19-6a6yguamv I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.UbnQZuVRGG... I: success in 519.5708 seconds md5: pplacer-dbgsym_1.1~alpha19-6_amd64.deb: OK md5: pplacer_1.1~alpha19-6_amd64.deb: OK sha1: pplacer-dbgsym_1.1~alpha19-6_amd64.deb: OK sha1: pplacer_1.1~alpha19-6_amd64.deb: OK sha256: pplacer-dbgsym_1.1~alpha19-6_amd64.deb: OK sha256: pplacer_1.1~alpha19-6_amd64.deb: OK Checksums: OK