Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/plastimatch/plastimatch_1.9.3+dfsg.1-2_amd64.buildinfo
Use metasnap for getting required timestamps
New buildinfo file: /tmp/plastimatch-1.9.3+dfsg.1-27be2bfjj/plastimatch_1.9.3+dfsg.1-2_amd64.buildinfo
Get source package info: plastimatch=1.9.3+dfsg.1-2
Source URL: http://snapshot.notset.fr/mr/package/plastimatch/1.9.3+dfsg.1-2/srcfiles?fileinfo=1
env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-5+b1 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-5 cmake=3.22.1-1+b1 cmake-data=3.22.1-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-13 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-strip-nondeterminism=1.12.1-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-2 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-13 gcc=4:11.2.0-2 gcc-11=11.2.0-13 gcc-11-base=11.2.0-13 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hdf5-helpers=1.10.7+repack-4 hostname=3.23 icu-devtools=67.1-7 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2+b1 libasan6=11.2.0-13 libatomic1=11.2.0-13 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37-10 libblas-dev=3.10.0-2 libblas3=3.10.0-2 libblkid1=2.37.2-4 libbrotli1=1.0.9-2+b3 libbz2-1.0=1.0.8-5 libc-bin=2.33-1 libc-dev-bin=2.33-1 libc6=2.33-1 libc6-dev=2.33-1 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-13 libcharls-dev=2.2.0+dfsg-3 libcharls2=2.2.0+dfsg-3 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.26-1 libcrypt1=1:4.4.26-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libcurl3-gnutls=7.79.1-2 libcurl4=7.79.1-2 libcurl4-openssl-dev=7.79.1-2 libdb5.3=5.3.28+dfsg1-0.8 libdcmtk-dev=3.6.6-4 libdcmtk16=3.6.6-4 libdebconfclient0=0.261 libdebhelper-perl=13.5.2 libdeflate-dev=1.8-1 libdeflate0=1.8-1 libdlib-data=19.10-3.1 libdlib-dev=19.10-3.1 libdlib19=19.10-3.1 libdouble-conversion-dev=3.1.5-7 libdouble-conversion3=3.1.5-7 libdpkg-perl=1.21.1 libelf1=0.186-1 libexpat1=2.4.1-3 libexpat1-dev=2.4.1-3 libffi8=3.4.2-3 libfftw3-bin=3.3.8-2 libfftw3-dev=3.3.8-2 libfftw3-double3=3.3.8-2 libfftw3-long3=3.3.8-2 libfftw3-quad3=3.3.8-2 libfftw3-single3=3.3.8-2 libfile-stripnondeterminism-perl=1.12.1-1 libgcc-11-dev=11.2.0-13 libgcc-s1=11.2.0-13 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgdcm-dev=3.0.10-1 libgdcm3.0=3.0.10-1 libgfortran5=11.2.0-13 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-2 libgomp1=11.2.0-13 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libhdf5-103-1=1.10.7+repack-4 libhdf5-cpp-103-1=1.10.7+repack-4 libhdf5-dev=1.10.7+repack-4 libhdf5-fortran-102=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhdf5-hl-cpp-100=1.10.7+repack-4 libhdf5-hl-fortran-100=1.10.7+repack-4 libhogweed6=3.7.3-1 libicu-dev=67.1-7 libicu67=67.1-7 libidn2-0=2.3.2-2 libinsighttoolkit4-dev=4.13.3withdata-dfsg1-4.1 libinsighttoolkit4.13=4.13.3withdata-dfsg1-4.1 libisl23=0.24-2 libitm1=11.2.0-13 libjbig-dev=2.1-3.1+b2 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libjson-c5=0.15-2 libjsoncpp25=1.9.5-2 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack-dev=3.10.0-2 liblapack3=3.10.0-2 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-13 liblz4-1=1.9.3-2 liblzma-dev=5.2.5-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libminc-dev=2.4.03-4 libminc2-5.2.0=2.4.03-4 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libncurses6=6.3-1 libncursesw6=6.3-1 libnetcdf-dev=1:4.8.1-1 libnetcdf19=1:4.8.1-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnifti-dev=3.0.1-8 libnifti2-2=3.0.1-8 libnifti2-dev=3.0.1-8 libnifticdf-dev=3.0.1-8 libnifticdf2=3.0.1-8 libniftiio-dev=3.0.1-8 libniftiio2=3.0.1-8 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libopenjp2-7=2.4.0-3 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libpng-dev=1.6.37-3 libpng16-16=1.6.37-3 libprocps8=2:3.3.17-5 libpsl5=0.21.0-1.2 libquadmath0=11.2.0-13 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-2 libsasl2-modules-db=2.1.27+dfsg2-2 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.13-1 libsmartcols1=2.37.2-4 libsocket++1=1.12.13+git20131030.5d039ba-1 libsqlite3-0=3.36.0-2 libsqlite3-dev=3.36.0-2 libssh2-1=1.10.0-2 libssl-dev=1.1.1l-1 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-13 libstdc++6=11.2.0-13 libsub-override-perl=0.09-2 libsystemd0=249.7-1 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libtiff-dev=4.3.0-2 libtiff5=4.3.0-2 libtiffxx5=4.3.0-2 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-13 libubsan1=11.2.0-13 libuchardet0=0.0.7-1 libudev1=249.7-1 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libuv1=1.42.0-1 libwebp6=0.6.1-2.1 libwrap0=7.6.q-31 libwrap0-dev=7.6.q-31 libxml2=2.9.12+dfsg-5+b1 libxml2-dev=2.9.12+dfsg-5+b1 libznz-dev=3.0.1-8 libznz3=3.0.1-8 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.5-1 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.3-1 ncurses-bin=6.3-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 procps=2:3.3.17-5 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 util-linux=2.37.2-4 uuid-dev=2.37.2-4 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211224T032400Z/ bookworm main
deb-src http://snapshot.notset.fr/archive/debian/20211224T032400Z/ bookworm main
deb http://snapshot.notset.fr/archive/debian/20211228T091540Z/ unstable main
deb http://snapshot.notset.fr/archive/debian/20211217T210032Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d plastimatch=1.9.3+dfsg.1-2 && mkdir -p /build/plastimatch-8jIeZE && dpkg-source --no-check -x /*.dsc /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 && chown -R builduser:builduser /build/plastimatch-8jIeZE" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1639905203" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/plastimatch-8jIeZE /tmp/plastimatch-1.9.3+dfsg.1-27be2bfjj bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211217T210032Z unstable main
I: automatically chosen mode: root
I: chroot architecture amd64 is equal to the host's architecture
I: automatically chosen format: tar
I: using /tmp/mmdebstrap.J2S6TnEGBK as tempdir
I: running apt-get update...
I: downloading packages with apt...
I: extracting archives...
I: installing essential packages...
I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.J2S6TnEGBK
Reading package lists...
Building dependency tree...
util-linux is already the newest version (2.37.2-4).
The following NEW packages will be installed:
  fakeroot libfakeroot
0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
Need to get 134 kB of archives.
After this operation, 397 kB of additional disk space will be used.
Get:1 http://snapshot.notset.fr/archive/debian/20211217T210032Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB]
Get:2 http://snapshot.notset.fr/archive/debian/20211217T210032Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 134 kB in 0s (867 kB/s)
Selecting previously unselected package libfakeroot:amd64.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 4680 files and directories currently installed.)
Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ...
Unpacking libfakeroot:amd64 (1.26-1) ...
Selecting previously unselected package fakeroot.
Preparing to unpack .../fakeroot_1.26-1_amd64.deb ...
Unpacking fakeroot (1.26-1) ...
Setting up libfakeroot:amd64 (1.26-1) ...
Setting up fakeroot (1.26-1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Processing triggers for libc-bin (2.33-1) ...
I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/
I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211224T032400Z/ bookworm main
deb-src http://snapshot.notset.fr/archive/debian/20211224T032400Z/ bookworm main
deb http://snapshot.notset.fr/archive/debian/20211228T091540Z/ unstable main
deb http://snapshot.notset.fr/archive/debian/20211217T210032Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.J2S6TnEGBK
Get:1 http://snapshot.notset.fr/archive/debian/20211224T032400Z bookworm InRelease [129 kB]
Get:2 http://snapshot.notset.fr/archive/debian/20211228T091540Z unstable InRelease [165 kB]
Hit:3 http://snapshot.notset.fr/archive/debian/20211217T210032Z unstable InRelease
Ign:4 http://snapshot.notset.fr/archive/debian/20211224T032400Z bookworm/main Sources
Ign:5 http://snapshot.notset.fr/archive/debian/20211224T032400Z bookworm/main amd64 Packages
Ign:4 http://snapshot.notset.fr/archive/debian/20211224T032400Z bookworm/main Sources
Ign:5 http://snapshot.notset.fr/archive/debian/20211224T032400Z bookworm/main amd64 Packages
Ign:4 http://snapshot.notset.fr/archive/debian/20211224T032400Z bookworm/main Sources
Ign:5 http://snapshot.notset.fr/archive/debian/20211224T032400Z bookworm/main amd64 Packages
Get:4 http://snapshot.notset.fr/archive/debian/20211224T032400Z bookworm/main Sources [11.8 MB]
Get:5 http://snapshot.notset.fr/archive/debian/20211224T032400Z bookworm/main amd64 Packages [11.2 MB]
Ign:6 http://snapshot.notset.fr/archive/debian/20211228T091540Z unstable/main amd64 Packages
Err:6 http://snapshot.notset.fr/archive/debian/20211228T091540Z unstable/main amd64 Packages
  404  Not Found [IP: 10.13.0.253 80]
Ign:6 http://snapshot.notset.fr/archive/debian/20211228T091540Z unstable/main amd64 Packages
Get:6 http://snapshot.notset.fr/archive/debian/20211228T091540Z unstable/main amd64 Packages [12.0 MB]
Fetched 35.3 MB in 31s (1154 kB/s)
Reading package lists...
I: installing remaining packages inside the chroot...
I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.J2S6TnEGBK
I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d plastimatch=1.9.3+dfsg.1-2 && mkdir -p /build/plastimatch-8jIeZE && dpkg-source --no-check -x /*.dsc /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 && chown -R builduser:builduser /build/plastimatch-8jIeZE"' exec /tmp/mmdebstrap.J2S6TnEGBK
Reading package lists...
NOTICE: 'plastimatch' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/plastimatch.git
Please use:
git clone https://salsa.debian.org/med-team/plastimatch.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1392 kB of source archives.
Get:1 http://snapshot.notset.fr/archive/debian/20211224T032400Z bookworm/main plastimatch 1.9.3+dfsg.1-2 (dsc) [2245 B]
Get:2 http://snapshot.notset.fr/archive/debian/20211224T032400Z bookworm/main plastimatch 1.9.3+dfsg.1-2 (tar) [1381 kB]
Get:3 http://snapshot.notset.fr/archive/debian/20211224T032400Z bookworm/main plastimatch 1.9.3+dfsg.1-2 (diff) [8928 B]
Fetched 1392 kB in 1s (1168 kB/s)
Download complete and in download only mode
W: Download is performed unsandboxed as root as file 'plastimatch_1.9.3+dfsg.1-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied)
dpkg-source: info: extracting plastimatch in /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1
dpkg-source: info: unpacking plastimatch_1.9.3+dfsg.1.orig.tar.xz
dpkg-source: info: unpacking plastimatch_1.9.3+dfsg.1-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying cxx14.patch
I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1639905203" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.J2S6TnEGBK
dpkg-buildpackage: info: source package plastimatch
dpkg-buildpackage: info: source version 1.9.3+dfsg.1-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1'
dh_auto_configure -- -DCMAKE_BUILD_TYPE:STRING=RELEASE -DCMAKE_SKIP_RPATH:BOOL=ON -DPLM_CONFIG_DEBIAN_BUILD:BOOL=ON -DBUILD_SHARED_LIBS=ON -DBUILD_TESTING:BOOL=ON
	cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE:STRING=RELEASE -DCMAKE_SKIP_RPATH:BOOL=ON -DPLM_CONFIG_DEBIAN_BUILD:BOOL=ON -DBUILD_SHARED_LIBS=ON -DBUILD_TESTING:BOOL=ON ..
-- The C compiler identification is GNU 11.2.0
-- The CXX compiler identification is GNU 11.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test DCMTK_HAS_EC_INVALIDVALUE
-- Performing Test DCMTK_HAS_EC_INVALIDVALUE - Success
-- DCMTK version 3.6.6 found.
-- Etags targets added.
-- Could NOT find Git (missing: GIT_EXECUTABLE) 
-- Could NOT find libLBFGS (missing: libLBFGS_LIBRARY libLBFGS_INCLUDE_DIR) 
-- Could NOT find nlopt (missing: nlopt_LIBRARY nlopt_INCLUDE_DIR) 
-- Looking for CL_VERSION_2_2
-- Looking for CL_VERSION_2_2 - not found
-- Looking for CL_VERSION_2_1
-- Looking for CL_VERSION_2_1 - not found
-- Looking for CL_VERSION_2_0
-- Looking for CL_VERSION_2_0 - not found
-- Looking for CL_VERSION_1_2
-- Looking for CL_VERSION_1_2 - not found
-- Looking for CL_VERSION_1_1
-- Looking for CL_VERSION_1_1 - not found
-- Looking for CL_VERSION_1_0
-- Looking for CL_VERSION_1_0 - not found
-- Could NOT find OpenCL (missing: OpenCL_LIBRARY OpenCL_INCLUDE_DIR) 
-- Check for compiler OpenMP support...
-- OpenMP flags "-fopenmp", OpenMP libraries ""
-- SSE2_FLAGS "-msse2 -mfpmath=sse"
-- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) 
-- CUDA Not found
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
-- Looking for wxWidgets - not found.
-- Looking for Matlab - not found.
-- Looking for Octave - not found.
-- Plastimatch version is 1.9.3
-- The imported target "vtkgdcm" references the file
   "/usr/lib/x86_64-linux-gnu/libvtkgdcm.so.3.0.10"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "vtkgdcmsharpglue" references the file
   "/usr/lib/cli/vtkgdcm-sharp-3.0/libvtkgdcmsharpglue.so"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "vtkgdcmJava" references the file
   "/usr/lib/x86_64-linux-gnu/jni/libvtkgdcmJava.so"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "vtkgdcmPython" references the file
   "/usr/lib/python3/dist-packages/vtkgdcmPython.cpython-39-x86_64-linux-gnu.so"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "vtkgdcmPythonD" references the file
   "/usr/lib/x86_64-linux-gnu/libvtkgdcmPythonD.so.3.0.10"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmdump" references the file
   "/usr/bin/gdcmdump"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmdiff" references the file
   "/usr/bin/gdcmdiff"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmraw" references the file
   "/usr/bin/gdcmraw"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmscanner" references the file
   "/usr/bin/gdcmscanner"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmanon" references the file
   "/usr/bin/gdcmanon"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmgendir" references the file
   "/usr/bin/gdcmgendir"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmimg" references the file
   "/usr/bin/gdcmimg"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmconv" references the file
   "/usr/bin/gdcmconv"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmtar" references the file
   "/usr/bin/gdcmtar"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcminfo" references the file
   "/usr/bin/gdcminfo"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmscu" references the file
   "/usr/bin/gdcmscu"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmxml" references the file
   "/usr/bin/gdcmxml"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmpap3" references the file
   "/usr/bin/gdcmpap3"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmpdf" references the file
   "/usr/bin/gdcmpdf"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- ITK_VERSION = 4.13.3 found
-- Looking for C++ include itkVectorCentralDifferenceImageFunction.h
-- Looking for C++ include itkVectorCentralDifferenceImageFunction.h - found
-- ITK_BASE = /usr
-- Looking for Qt4 - not found
-- Looking for Qt5 - not found
-- Could NOT find yaml (missing: yaml_LIBRARIES yaml_INCLUDE_DIR) 
-- Machine is 64-bit
-- Checking host processor: x86_64
-- Checking target processor: x86_64
-- Checking epsilon: 2.22045E-16 2.22045E-16 2.22045E-16
-- Checking sign of char: char is signed
-- Not appending /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.0
-- Appending /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LIBDIR
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR


-- Build files have been written to: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu
make[1]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1'
   dh_auto_build -a
	cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 -B/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/depend
make  -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/depend
make  -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/depend
make  -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake --color=
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/devillard /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/DependInfo.cmake --color=
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29/CMakeFiles/inih.dir/DependInfo.cmake --color=
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/specfun /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun/CMakeFiles/specfun.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/build
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[  0%] Building CXX object libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o
[  0%] Building C object libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++14 -MD -MT libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o -MF CMakeFiles/devillard.dir/wirth.cpp.o.d -o CMakeFiles/devillard.dir/wirth.cpp.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard/wirth.cpp
[  1%] Building C object libs/inih-r29/CMakeFiles/inih.dir/ini.c.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cc  -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -MF CMakeFiles/lbfgs.dir/lib/lbfgs.c.o.d -o CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/lib/lbfgs.c
[  1%] Building C object libs/specfun/CMakeFiles/specfun.dir/mpbdv.c.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cc   -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/inih-r29/CMakeFiles/inih.dir/ini.c.o -MF CMakeFiles/inih.dir/ini.c.o.d -o CMakeFiles/inih.dir/ini.c.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29/ini.c
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cc   -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/specfun/CMakeFiles/specfun.dir/mpbdv.c.o -MF CMakeFiles/specfun.dir/mpbdv.c.o.d -o CMakeFiles/specfun.dir/mpbdv.c.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/specfun/mpbdv.c
[  1%] Building CXX object libs/inih-r29/CMakeFiles/inih.dir/INIReader.cpp.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++14 -MD -MT libs/inih-r29/CMakeFiles/inih.dir/INIReader.cpp.o -MF CMakeFiles/inih.dir/INIReader.cpp.o.d -o CMakeFiles/inih.dir/INIReader.cpp.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29/INIReader.cpp
[  1%] Linking C static library ../../libspecfun.a
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -P CMakeFiles/specfun.dir/cmake_clean_target.cmake
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -E cmake_link_script CMakeFiles/specfun.dir/link.txt --verbose=1
/usr/bin/ar qc ../../libspecfun.a CMakeFiles/specfun.dir/mpbdv.c.o
[  1%] Linking CXX static library ../../libdevillard.a
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/cmake -P CMakeFiles/devillard.dir/cmake_clean_target.cmake
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/cmake -E cmake_link_script CMakeFiles/devillard.dir/link.txt --verbose=1
/usr/bin/ar qc ../../libdevillard.a CMakeFiles/devillard.dir/wirth.cpp.o
/usr/bin/ranlib ../../libspecfun.a
/usr/bin/ranlib ../../libdevillard.a
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[  1%] Built target specfun
make  -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress/CMakeFiles/nkidecompress.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[  1%] Building CXX object libs/nkidecompress/CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++14 -MD -MT libs/nkidecompress/CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -MF CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o.d -o CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress/nkidecompress.cxx
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[  1%] Built target devillard
make  -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[  1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o -MF CMakeFiles/plmsys.dir/dir_list.cxx.o.d -o CMakeFiles/plmsys.dir/dir_list.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/dir_list.cxx
[  1%] Linking C static library ../../liblbfgs.a
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cmake -P CMakeFiles/lbfgs.dir/cmake_clean_target.cmake
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cmake -E cmake_link_script CMakeFiles/lbfgs.dir/link.txt --verbose=1
/usr/bin/ar qc ../../liblbfgs.a CMakeFiles/lbfgs.dir/lib/lbfgs.c.o
[  1%] Linking CXX static library ../../libnkidecompress.a
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -P CMakeFiles/nkidecompress.dir/cmake_clean_target.cmake
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -E cmake_link_script CMakeFiles/nkidecompress.dir/link.txt --verbose=1
/usr/bin/ranlib ../../liblbfgs.a
/usr/bin/ar qc ../../libnkidecompress.a CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[  1%] Built target lbfgs
make  -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[  1%] Building CXX object src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++14 -MD -MT src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o -MF CMakeFiles/plmclp.dir/plm_clp.cxx.o.d -o CMakeFiles/plmclp.dir/plm_clp.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp/plm_clp.cxx
/usr/bin/ranlib ../../libnkidecompress.a
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[  1%] Built target nkidecompress
[  2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o -MF CMakeFiles/plmsys.dir/file_util.cxx.o.d -o CMakeFiles/plmsys.dir/file_util.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/file_util.cxx
[  2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o -MF CMakeFiles/plmsys.dir/dlib_threads.cxx.o.d -o CMakeFiles/plmsys.dir/dlib_threads.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/dlib_threads.cxx
[  2%] Linking CXX static library ../../libinih.a
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cmake -P CMakeFiles/inih.dir/cmake_clean_target.cmake
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cmake -E cmake_link_script CMakeFiles/inih.dir/link.txt --verbose=1
/usr/bin/ar qc ../../libinih.a CMakeFiles/inih.dir/ini.c.o CMakeFiles/inih.dir/INIReader.cpp.o
/usr/bin/ranlib ../../libinih.a
[  2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o -MF CMakeFiles/plmsys.dir/logfile.cxx.o.d -o CMakeFiles/plmsys.dir/logfile.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/logfile.cxx
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[  2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o
[  2%] Built target inih
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o -MF CMakeFiles/plmsys.dir/option_range.cxx.o.d -o CMakeFiles/plmsys.dir/option_range.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/option_range.cxx
[  2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o -MF CMakeFiles/plmsys.dir/path_util.cxx.o.d -o CMakeFiles/plmsys.dir/path_util.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/path_util.cxx
[  3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o -MF CMakeFiles/plmsys.dir/plm_endian.cxx.o.d -o CMakeFiles/plmsys.dir/plm_endian.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/plm_endian.cxx
[  3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -MF CMakeFiles/plmsys.dir/plm_fwrite.cxx.o.d -o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/plm_fwrite.cxx
[  3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o -MF CMakeFiles/plmsys.dir/plm_sleep.cxx.o.d -o CMakeFiles/plmsys.dir/plm_sleep.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/plm_sleep.cxx
[  3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o -MF CMakeFiles/plmsys.dir/plm_timer.cxx.o.d -o CMakeFiles/plmsys.dir/plm_timer.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/plm_timer.cxx
[  4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/print_and_exit.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/print_and_exit.cxx.o -MF CMakeFiles/plmsys.dir/print_and_exit.cxx.o.d -o CMakeFiles/plmsys.dir/print_and_exit.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/print_and_exit.cxx
[  4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o -MF CMakeFiles/plmsys.dir/string_util.cxx.o.d -o CMakeFiles/plmsys.dir/string_util.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/string_util.cxx
[  4%] Building C object src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload_legacy.c.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/cc -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/ITK-4.13 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload_legacy.c.o -MF CMakeFiles/plmsys.dir/delayload_legacy.c.o.d -o CMakeFiles/plmsys.dir/delayload_legacy.c.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys/delayload_legacy.c
[  4%] Linking CXX static library libplmclp.a
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -P CMakeFiles/plmclp.dir/cmake_clean_target.cmake
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmclp.dir/link.txt --verbose=1
/usr/bin/ar qc libplmclp.a CMakeFiles/plmclp.dir/plm_clp.cxx.o
/usr/bin/ranlib libplmclp.a
[  4%] Linking CXX shared library ../../../libplmsys.so
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmsys.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -shared -Wl,-soname,libplmsys.so.1.9 -o ../../../libplmsys.so.1.9 CMakeFiles/plmsys.dir/dir_list.cxx.o CMakeFiles/plmsys.dir/dlib_threads.cxx.o CMakeFiles/plmsys.dir/file_util.cxx.o CMakeFiles/plmsys.dir/logfile.cxx.o CMakeFiles/plmsys.dir/option_range.cxx.o CMakeFiles/plmsys.dir/path_util.cxx.o CMakeFiles/plmsys.dir/plm_endian.cxx.o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o CMakeFiles/plmsys.dir/plm_sleep.cxx.o CMakeFiles/plmsys.dir/plm_timer.cxx.o CMakeFiles/plmsys.dir/print_and_exit.cxx.o CMakeFiles/plmsys.dir/string_util.cxx.o CMakeFiles/plmsys.dir/delayload_legacy.c.o   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -ldl -lpthread -lpthread -lnsl -lpng -lz -ljpeg -lblas -llapack -lsqlite3 
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/cmake -E cmake_symlink_library ../../../libplmsys.so.1.9 ../../../libplmsys.so.1.9 ../../../libplmsys.so
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[  4%] Built target plmclp
[  4%] Built target plmsys
make  -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base/CMakeFiles/plmbase.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[  5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/aperture.cxx.o
[  5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o
[  5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o
[  5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_header.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/aperture.cxx.o -MF CMakeFiles/plmbase.dir/aperture.cxx.o.d -o CMakeFiles/plmbase.dir/aperture.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/aperture.cxx
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o -MF CMakeFiles/plmbase.dir/astroid_dose.cxx.o.d -o CMakeFiles/plmbase.dir/astroid_dose.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/astroid_dose.cxx
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o -MF CMakeFiles/plmbase.dir/beam_geometry.cxx.o.d -o CMakeFiles/plmbase.dir/beam_geometry.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/beam_geometry.cxx
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_header.cxx.o -MF CMakeFiles/plmbase.dir/bspline_header.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_header.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_header.cxx
[  6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -MF CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_interpolate.cxx
[  6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -fopenmp -msse2 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o -MF CMakeFiles/plmbase.dir/bspline_warp.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_warp.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_warp.cxx
[  6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o -MF CMakeFiles/plmbase.dir/bspline_xform.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_xform.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_xform.cxx
[  6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -MF CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/bspline_xform_legacy.cxx
[  7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_extract.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_extract.cxx.o -MF CMakeFiles/plmbase.dir/cxt_extract.cxx.o.d -o CMakeFiles/plmbase.dir/cxt_extract.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/cxt_extract.cxx
[  7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o -MF CMakeFiles/plmbase.dir/cxt_io.cxx.o.d -o CMakeFiles/plmbase.dir/cxt_io.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/cxt_io.cxx
[  7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o -MF CMakeFiles/plmbase.dir/dicom_probe.cxx.o.d -o CMakeFiles/plmbase.dir/dicom_probe.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dicom_probe.cxx
[  7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o -MF CMakeFiles/plmbase.dir/dicom_util.cxx.o.d -o CMakeFiles/plmbase.dir/dicom_util.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dicom_util.cxx
[  8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o -MF CMakeFiles/plmbase.dir/direction_cosines.cxx.o.d -o CMakeFiles/plmbase.dir/direction_cosines.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/direction_cosines.cxx
[  8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o -MF CMakeFiles/plmbase.dir/direction_matrices.cxx.o.d -o CMakeFiles/plmbase.dir/direction_matrices.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/direction_matrices.cxx
[  8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o -MF CMakeFiles/plmbase.dir/exchkeys.cxx.o.d -o CMakeFiles/plmbase.dir/exchkeys.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/exchkeys.cxx
[  8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/float_pair_list.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/float_pair_list.cxx.o -MF CMakeFiles/plmbase.dir/float_pair_list.cxx.o.d -o CMakeFiles/plmbase.dir/float_pair_list.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/float_pair_list.cxx
[  9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/gaussian.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/gaussian.cxx.o -MF CMakeFiles/plmbase.dir/gaussian.cxx.o.d -o CMakeFiles/plmbase.dir/gaussian.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/gaussian.cxx
[  9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/hnd_io.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/hnd_io.cxx.o -MF CMakeFiles/plmbase.dir/hnd_io.cxx.o.d -o CMakeFiles/plmbase.dir/hnd_io.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/hnd_io.cxx
[  9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/image_stats.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/image_stats.cxx.o -MF CMakeFiles/plmbase.dir/image_stats.cxx.o.d -o CMakeFiles/plmbase.dir/image_stats.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/image_stats.cxx
[  9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o -MF CMakeFiles/plmbase.dir/interpolate.cxx.o.d -o CMakeFiles/plmbase.dir/interpolate.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/interpolate.cxx
[ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_bbox.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_bbox.cxx.o -MF CMakeFiles/plmbase.dir/itk_bbox.cxx.o.d -o CMakeFiles/plmbase.dir/itk_bbox.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_bbox.cxx
[ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o -MF CMakeFiles/plmbase.dir/itk_directions.cxx.o.d -o CMakeFiles/plmbase.dir/itk_directions.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_directions.cxx
[ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image.cxx.o -MF CMakeFiles/plmbase.dir/itk_image.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image.cxx
[ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_accumulate.cxx
[ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_cast.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_cast.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_cast.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_cast.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_cast.cxx
[ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_clone.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_clone.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_clone.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_clone.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_clone.cxx
[ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_create.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_create.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_create.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_create.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_create.cxx
[ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_header_compare.cxx
[ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_char.cxx
[ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx
[ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_float.cxx
[ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx
[ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_short.cxx
[ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_int64.cxx
[ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx
[ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx
[ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_uint64.cxx
[ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_ushort.cxx
[ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_load_vec.cxx
[ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_origin.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_origin.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_origin.cxx
[ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_region.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_region.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_region.cxx
[ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_save.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_save.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_save.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_save.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_save.cxx
[ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_shift_scale.cxx
[ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_stats.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_stats.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_stats.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_stats.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_image_stats.cxx
[ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_metadata.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_metadata.cxx.o -MF CMakeFiles/plmbase.dir/itk_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/itk_metadata.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_metadata.cxx
[ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_pointset.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_pointset.cxx.o -MF CMakeFiles/plmbase.dir/itk_pointset.cxx.o.d -o CMakeFiles/plmbase.dir/itk_pointset.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_pointset.cxx
[ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_resample.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_resample.cxx.o -MF CMakeFiles/plmbase.dir/itk_resample.cxx.o.d -o CMakeFiles/plmbase.dir/itk_resample.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_resample.cxx
[ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_volume_header.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_volume_header.cxx.o -MF CMakeFiles/plmbase.dir/itk_volume_header.cxx.o.d -o CMakeFiles/plmbase.dir/itk_volume_header.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_volume_header.cxx
[ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_warp.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_warp.cxx.o -MF CMakeFiles/plmbase.dir/itk_warp.cxx.o.d -o CMakeFiles/plmbase.dir/itk_warp.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/itk_warp.cxx
[ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/mc_dose.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/mc_dose.cxx.o -MF CMakeFiles/plmbase.dir/mc_dose.cxx.o.d -o CMakeFiles/plmbase.dir/mc_dose.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/mc_dose.cxx
[ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/metadata.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/metadata.cxx.o -MF CMakeFiles/plmbase.dir/metadata.cxx.o.d -o CMakeFiles/plmbase.dir/metadata.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/metadata.cxx
[ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/mha_io.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/mha_io.cxx.o -MF CMakeFiles/plmbase.dir/mha_io.cxx.o.d -o CMakeFiles/plmbase.dir/mha_io.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/mha_io.cxx
[ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/nki_io.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/nki_io.cxx.o -MF CMakeFiles/plmbase.dir/nki_io.cxx.o.d -o CMakeFiles/plmbase.dir/nki_io.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/nki_io.cxx
[ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/parameter_parser.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/parameter_parser.cxx.o -MF CMakeFiles/plmbase.dir/parameter_parser.cxx.o.d -o CMakeFiles/plmbase.dir/parameter_parser.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/parameter_parser.cxx
[ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_file_format.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_file_format.cxx.o -MF CMakeFiles/plmbase.dir/plm_file_format.cxx.o.d -o CMakeFiles/plmbase.dir/plm_file_format.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_file_format.cxx
[ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o -MF CMakeFiles/plmbase.dir/plm_image.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_image.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_file_format.cxx: In function ‘Plm_file_format plm_file_format_deduce(const char*)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_file_format.cxx:97:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |         fgets (line, MAX_LINE, fp);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_convert.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_image_convert.cxx
[ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_header.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_header.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_header.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_header.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_image_header.cxx
[ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_set.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_set.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_set.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_set.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_image_set.cxx
[ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_type.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_type.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_type.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_type.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_image_type.cxx
[ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_warp.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_warp.cxx.o -MF CMakeFiles/plmbase.dir/plm_warp.cxx.o.d -o CMakeFiles/plmbase.dir/plm_warp.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/plm_warp.cxx
[ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pointset.cxx.o -MF CMakeFiles/plmbase.dir/pointset.cxx.o.d -o CMakeFiles/plmbase.dir/pointset.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pointset.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pointset.cxx: In member function ‘void Pointset<T>::load_fcsv(const char*) [with T = Labeled_point]’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pointset.cxx:65:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   65 |         fgets (s, 1024, fp);
      |         ~~~~~~^~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pointset.cxx: In member function ‘void Pointset<T>::load_fcsv(const char*) [with T = Point]’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pointset.cxx:65:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
[ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o -MF CMakeFiles/plmbase.dir/pointset_warp.cxx.o.d -o CMakeFiles/plmbase.dir/pointset_warp.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pointset_warp.cxx
[ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o -MF CMakeFiles/plmbase.dir/proj_image.cxx.o.d -o CMakeFiles/plmbase.dir/proj_image.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_image.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_image.cxx: In function ‘void pfm_load(Proj_image*, const char*)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_image.cxx:175:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  175 |     fgets (buf, 1024, fp);
      |     ~~~~~~^~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_image.cxx:183:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  183 |     fgets (buf, 1024, fp);
      |     ~~~~~~^~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_image.cxx:190:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  190 |     fgets (buf, 1024, fp);
      |     ~~~~~~^~~~~~~~~~~~~~~
[ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image_dir.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -MF CMakeFiles/plmbase.dir/proj_image_dir.cxx.o.d -o CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_image_dir.cxx
[ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_matrix.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_matrix.cxx.o -MF CMakeFiles/plmbase.dir/proj_matrix.cxx.o.d -o CMakeFiles/plmbase.dir/proj_matrix.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_matrix.cxx
[ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_volume.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_volume.cxx.o -MF CMakeFiles/plmbase.dir/proj_volume.cxx.o.d -o CMakeFiles/plmbase.dir/proj_volume.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_volume.cxx
[ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pwlut.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pwlut.cxx.o -MF CMakeFiles/plmbase.dir/pwlut.cxx.o.d -o CMakeFiles/plmbase.dir/pwlut.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/pwlut.cxx
[ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterize_slice.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rasterize_slice.cxx.o -MF CMakeFiles/plmbase.dir/rasterize_slice.cxx.o.d -o CMakeFiles/plmbase.dir/rasterize_slice.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rasterize_slice.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_volume.cxx: In member function ‘void Proj_volume::save_header(const char*)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_volume.cxx:299:30: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
  299 |     fprintf (fp, "num_steps=%d\n", d_ptr->num_steps);
      |                             ~^     ~~~~~~~~~~~~~~~~
      |                              |            |
      |                              int          plm_long {aka long int}
      |                             %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_volume.cxx:301:30: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
  301 |     fprintf (fp, "image_dim=%d %d\n",
      |                             ~^
      |                              |
      |                              int
      |                             %ld
  302 |         d_ptr->image_dim[0], d_ptr->image_dim[1]);
      |         ~~~~~~~~~~~~~~~~~~~   
      |                           |
      |                           plm_long {aka long int}
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/proj_volume.cxx:301:33: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
  301 |     fprintf (fp, "image_dim=%d %d\n",
      |                                ~^
      |                                 |
      |                                 int
      |                                %ld
  302 |         d_ptr->image_dim[0], d_ptr->image_dim[1]);
      |                              ~~~~~~~~~~~~~~~~~~~
      |                                                |
      |                                                plm_long {aka long int}
[ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterizer.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rasterizer.cxx.o -MF CMakeFiles/plmbase.dir/rasterizer.cxx.o.d -o CMakeFiles/plmbase.dir/rasterizer.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rasterizer.cxx
[ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/raw_pointset.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/raw_pointset.cxx.o -MF CMakeFiles/plmbase.dir/raw_pointset.cxx.o.d -o CMakeFiles/plmbase.dir/raw_pointset.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/raw_pointset.cxx
[ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -MF CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o.d -o CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/ray_trace_probe.cxx
[ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o -MF CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o.d -o CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/ray_trace_uniform.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/raw_pointset.cxx: In function ‘Raw_pointset* pointset_load_fcsv(const char*)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/raw_pointset.cxx:81:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |         fgets (s, 1024, fp);
      |         ~~~~~~^~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/raw_pointset.cxx: In function ‘Raw_pointset* pointset_load_txt(const char*)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/raw_pointset.cxx:135:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  135 |         fgets (s, 1024, fp);
      |         ~~~~~~^~~~~~~~~~~~~
[ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume.cxx.o -MF CMakeFiles/plmbase.dir/rpl_volume.cxx.o.d -o CMakeFiles/plmbase.dir/rpl_volume.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rpl_volume.cxx
[ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o -MF CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o.d -o CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rpl_volume_lut.cxx
[ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o -MF CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o.d -o CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rtds_dcmtk.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rpl_volume.cxx: In member function ‘void Rpl_volume::apply_beam_modifiers()’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rpl_volume.cxx:1471:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=]
 1471 |     printf ("ires = %d %d\n", ires[0], ires[1]);
      |                     ~^        ~~~~~~~
      |                      |              |
      |                      int            long int
      |                     %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rpl_volume.cxx:1471:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=]
 1471 |     printf ("ires = %d %d\n", ires[0], ires[1]);
      |                        ~^              ~~~~~~~
      |                         |                    |
      |                         int                  long int
      |                        %ld
[ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study.cxx.o -MF CMakeFiles/plmbase.dir/rt_study.cxx.o.d -o CMakeFiles/plmbase.dir/rt_study.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rt_study.cxx
[ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o -MF CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rt_study_metadata.cxx
[ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtog_io.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtog_io.cxx.o -MF CMakeFiles/plmbase.dir/rtog_io.cxx.o.d -o CMakeFiles/plmbase.dir/rtog_io.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rtog_io.cxx
[ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss.cxx.o -MF CMakeFiles/plmbase.dir/rtss.cxx.o.d -o CMakeFiles/plmbase.dir/rtss.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rtss.cxx
[ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_contour.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_contour.cxx.o -MF CMakeFiles/plmbase.dir/rtss_contour.cxx.o.d -o CMakeFiles/plmbase.dir/rtss_contour.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rtss_contour.cxx
[ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_roi.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_roi.cxx.o -MF CMakeFiles/plmbase.dir/rtss_roi.cxx.o.d -o CMakeFiles/plmbase.dir/rtss_roi.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rtss_roi.cxx
[ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan.cxx.o -MF CMakeFiles/plmbase.dir/rtplan.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rtplan.cxx
[ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_beam.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_beam.cxx.o -MF CMakeFiles/plmbase.dir/rtplan_beam.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan_beam.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rtplan_beam.cxx
[ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o -MF CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/rtplan_control_pt.cxx
[ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/segmentation.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/segmentation.cxx.o -MF CMakeFiles/plmbase.dir/segmentation.cxx.o.d -o CMakeFiles/plmbase.dir/segmentation.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/segmentation.cxx
[ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/slice_extract.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/slice_extract.cxx.o -MF CMakeFiles/plmbase.dir/slice_extract.cxx.o.d -o CMakeFiles/plmbase.dir/slice_extract.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/slice_extract.cxx
[ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/slice_list.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/slice_list.cxx.o -MF CMakeFiles/plmbase.dir/slice_list.cxx.o.d -o CMakeFiles/plmbase.dir/slice_list.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/slice_list.cxx
[ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ss_img_extract.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ss_img_extract.cxx.o -MF CMakeFiles/plmbase.dir/ss_img_extract.cxx.o.d -o CMakeFiles/plmbase.dir/ss_img_extract.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/ss_img_extract.cxx
[ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ss_list_io.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ss_list_io.cxx.o -MF CMakeFiles/plmbase.dir/ss_list_io.cxx.o.d -o CMakeFiles/plmbase.dir/ss_list_io.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/ss_list_io.cxx
[ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/threading.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/threading.cxx.o -MF CMakeFiles/plmbase.dir/threading.cxx.o.d -o CMakeFiles/plmbase.dir/threading.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/threading.cxx
[ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/thumbnail.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/thumbnail.cxx.o -MF CMakeFiles/plmbase.dir/thumbnail.cxx.o.d -o CMakeFiles/plmbase.dir/thumbnail.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/thumbnail.cxx
[ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/vf.cxx.o -MF CMakeFiles/plmbase.dir/vf.cxx.o.d -o CMakeFiles/plmbase.dir/vf.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/vf.cxx
[ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_convolve.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/vf_convolve.cxx.o -MF CMakeFiles/plmbase.dir/vf_convolve.cxx.o.d -o CMakeFiles/plmbase.dir/vf_convolve.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/vf_convolve.cxx
[ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_jacobian.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/vf_jacobian.cxx.o -MF CMakeFiles/plmbase.dir/vf_jacobian.cxx.o.d -o CMakeFiles/plmbase.dir/vf_jacobian.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/vf_jacobian.cxx
[ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_stats.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/vf_stats.cxx.o -MF CMakeFiles/plmbase.dir/vf_stats.cxx.o.d -o CMakeFiles/plmbase.dir/vf_stats.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/vf_stats.cxx
[ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume.cxx.o -MF CMakeFiles/plmbase.dir/volume.cxx.o.d -o CMakeFiles/plmbase.dir/volume.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/volume.cxx
[ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o -MF CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o.d -o CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/volume_boundary_behavior.cxx
[ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_conv.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -fopenmp -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_conv.cxx.o -MF CMakeFiles/plmbase.dir/volume_conv.cxx.o.d -o CMakeFiles/plmbase.dir/volume_conv.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/volume_conv.cxx
[ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_fill.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_fill.cxx.o -MF CMakeFiles/plmbase.dir/volume_fill.cxx.o.d -o CMakeFiles/plmbase.dir/volume_fill.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/volume_fill.cxx
[ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_gaussian.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_gaussian.cxx.o -MF CMakeFiles/plmbase.dir/volume_gaussian.cxx.o.d -o CMakeFiles/plmbase.dir/volume_gaussian.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/volume_gaussian.cxx
[ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_grad.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_grad.cxx.o -MF CMakeFiles/plmbase.dir/volume_grad.cxx.o.d -o CMakeFiles/plmbase.dir/volume_grad.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/volume_grad.cxx
[ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_header.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_header.cxx.o -MF CMakeFiles/plmbase.dir/volume_header.cxx.o.d -o CMakeFiles/plmbase.dir/volume_header.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/volume_header.cxx
[ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_limit.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_limit.cxx.o -MF CMakeFiles/plmbase.dir/volume_limit.cxx.o.d -o CMakeFiles/plmbase.dir/volume_limit.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/volume_limit.cxx
[ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_resample.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_resample.cxx.o -MF CMakeFiles/plmbase.dir/volume_resample.cxx.o.d -o CMakeFiles/plmbase.dir/volume_resample.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/volume_resample.cxx
[ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_stats.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_stats.cxx.o -MF CMakeFiles/plmbase.dir/volume_stats.cxx.o.d -o CMakeFiles/plmbase.dir/volume_stats.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/volume_stats.cxx
[ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform.cxx.o -MF CMakeFiles/plmbase.dir/xform.cxx.o.d -o CMakeFiles/plmbase.dir/xform.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform.cxx
[ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_convert.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform_convert.cxx.o -MF CMakeFiles/plmbase.dir/xform_convert.cxx.o.d -o CMakeFiles/plmbase.dir/xform_convert.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_convert.cxx
[ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_legacy.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform_legacy.cxx.o -MF CMakeFiles/plmbase.dir/xform_legacy.cxx.o.d -o CMakeFiles/plmbase.dir/xform_legacy.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx
[ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_point.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform_point.cxx.o -MF CMakeFiles/plmbase.dir/xform_point.cxx.o.d -o CMakeFiles/plmbase.dir/xform_point.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_point.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function ‘void xform_legacy_save_itk_bsp(itk::BSplineDeformableTransform<double, 3, 3>::Pointer, const char*)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx:230:40: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘itk::Transform<double, 3, 3>::NumberOfParametersType’ {aka ‘long unsigned int’} [-Wformat=]
  230 |             printf (" # of parameters=%d\n", transform->GetBulkTransform()->GetNumberOfParameters());
      |                                       ~^     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                        |                                                         |
      |                                        int                                                       itk::Transform<double, 3, 3>::NumberOfParametersType {aka long unsigned int}
      |                                       %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function ‘void xform_legacy_load(Xform*, FILE*)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx:37:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   37 |     fgets (buf,1024,fp);
      |     ~~~~~~^~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx:99:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   99 |         fgets(buf,1024,fp);
      |         ~~~~~^~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx:100:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  100 |         fgets(buf,1024,fp);
      |         ~~~~~^~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx:103:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  103 |         fgets(buf,1024,fp);
      |         ~~~~~^~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx:141:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  141 |             fgets(buf,1024,fp);
      |             ~~~~~^~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx:150:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  150 |         fgets(buf,1024,fp);
      |         ~~~~~^~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx:156:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  156 |         fgets(buf,1024,fp);
      |         ~~~~~^~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xform_legacy.cxx:168:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  168 |         fgets(buf,1024,fp);
      |         ~~~~~^~~~~~~~~~~~~
[ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct.cxx.o -MF CMakeFiles/plmbase.dir/xio_ct.cxx.o.d -o CMakeFiles/plmbase.dir/xio_ct.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_ct.cxx
[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -MF CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o.d -o CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_ct_transform.cxx
[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o -MF CMakeFiles/plmbase.dir/xio_demographic.cxx.o.d -o CMakeFiles/plmbase.dir/xio_demographic.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_demographic.cxx
[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dir.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dir.cxx.o -MF CMakeFiles/plmbase.dir/xio_dir.cxx.o.d -o CMakeFiles/plmbase.dir/xio_dir.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dir.cxx
[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dose.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dose.cxx.o -MF CMakeFiles/plmbase.dir/xio_dose.cxx.o.d -o CMakeFiles/plmbase.dir/xio_dose.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx
[ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_patient.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_patient.cxx.o -MF CMakeFiles/plmbase.dir/xio_patient.cxx.o.d -o CMakeFiles/plmbase.dir/xio_patient.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_patient.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx: In function ‘void xio_dose_load_header(Xio_dose_header*, const char*)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx:73:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   73 |     fgets (line1, sizeof(line1), fp);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx:82:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   82 |     fgets (line1, sizeof(line1), fp);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx:86:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   86 |         fgets (line1, sizeof(line1), fp);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx:90:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   90 |     fgets (line1, sizeof(line1), fp);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx:101:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  101 |         fgets (line1, sizeof(line1), fp);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx:106:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  106 |     fgets (line1, sizeof(line1), fp);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx:117:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  117 |     fgets (line1, sizeof(line1), fp);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx:120:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  120 |     fgets (line1, sizeof(line1), fp);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_dose.cxx:135:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  135 |     fgets (line1, sizeof(line1), fp);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
[ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_plan.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_plan.cxx.o -MF CMakeFiles/plmbase.dir/xio_plan.cxx.o.d -o CMakeFiles/plmbase.dir/xio_plan.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_plan.cxx
[ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_structures.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_structures.cxx.o -MF CMakeFiles/plmbase.dir/xio_structures.cxx.o.d -o CMakeFiles/plmbase.dir/xio_structures.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx
[ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_studyset.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_studyset.cxx.o -MF CMakeFiles/plmbase.dir/xio_studyset.cxx.o.d -o CMakeFiles/plmbase.dir/xio_studyset.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_studyset.cxx
[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xpm.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xpm.cxx.o -MF CMakeFiles/plmbase.dir/xpm.cxx.o.d -o CMakeFiles/plmbase.dir/xpm.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xpm.cxx
[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_file.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_file.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_file.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx: In function ‘void add_cms_structure(Rtss*, const Xio_studyset&, const char*, float)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx:120:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  120 |     fgets (buf, 1024, fp);
      |     ~~~~~~^~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx:121:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  121 |     fgets (buf, 1024, fp);
      |     ~~~~~~^~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx:122:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  122 |     fgets (buf, 1024, fp);
      |     ~~~~~~^~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx:123:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |     fgets (buf, 1024, fp);
      |     ~~~~~~^~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx:124:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  124 |     fgets (buf, 1024, fp);
      |     ~~~~~~^~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx:134:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  134 |         fgets (buf, 1024, fp);
      |         ~~~~~~^~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx:141:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  141 |         fgets (buf, 1024, fp);
      |         ~~~~~~^~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/xio_structures.cxx:180:19: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  180 |             fgets (buf, 1024, fp);
      |             ~~~~~~^~~~~~~~~~~~~~~
[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_image.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_image.cxx
[ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_metadata.cxx
[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_module.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_module.cxx
[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rdd.cxx
[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtdose.cxx
[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtss.cxx
[ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx
[ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rt_study.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx: In member function ‘void Dcmtk_rt_study::rt_ion_plan_load()’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx:101:30: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
  101 |     printf (">> Num beams = %d\n", num_beams);
      |                             ~^     ~~~~~~~~~
      |                              |     |
      |                              int   long unsigned int
      |                             %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx:142:35: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
  142 |         printf (">> Adding beam (%d cp)\n", num_cp);
      |                                  ~^         ~~~~~~
      |                                   |         |
      |                                   int       long unsigned int
      |                                  %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx:208:37: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=]
  208 |             printf (">> Adding cp (%d spots)\n", num_spots);
      |                                    ~^            ~~~~~~~~~
      |                                     |            |
      |                                     int          long int
      |                                    %ld
[ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_rt_study_p.cxx
[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_series.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_series.cxx
[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_sro.cxx
[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_uid.cxx
[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_util.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_util.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_util.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_util.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/dcmtk_util.cxx
[ 40%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nkidecompress -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o -MF CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o.d -o CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base/ray_trace_exact.cxx
[ 40%] Linking CXX shared library ../../../libplmbase.so
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmbase.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -shared -Wl,-soname,libplmbase.so.1.9 -o ../../../libplmbase.so.1.9 CMakeFiles/plmbase.dir/aperture.cxx.o CMakeFiles/plmbase.dir/astroid_dose.cxx.o CMakeFiles/plmbase.dir/beam_geometry.cxx.o CMakeFiles/plmbase.dir/bspline_header.cxx.o CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o CMakeFiles/plmbase.dir/bspline_warp.cxx.o CMakeFiles/plmbase.dir/bspline_xform.cxx.o CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o CMakeFiles/plmbase.dir/cxt_extract.cxx.o CMakeFiles/plmbase.dir/cxt_io.cxx.o CMakeFiles/plmbase.dir/dicom_probe.cxx.o CMakeFiles/plmbase.dir/dicom_util.cxx.o CMakeFiles/plmbase.dir/direction_cosines.cxx.o CMakeFiles/plmbase.dir/direction_matrices.cxx.o CMakeFiles/plmbase.dir/exchkeys.cxx.o CMakeFiles/plmbase.dir/float_pair_list.cxx.o CMakeFiles/plmbase.dir/gaussian.cxx.o CMakeFiles/plmbase.dir/hnd_io.cxx.o CMakeFiles/plmbase.dir/image_stats.cxx.o CMakeFiles/plmbase.dir/interpolate.cxx.o CMakeFiles/plmbase.dir/itk_bbox.cxx.o CMakeFiles/plmbase.dir/itk_directions.cxx.o CMakeFiles/plmbase.dir/itk_image.cxx.o CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o CMakeFiles/plmbase.dir/itk_image_cast.cxx.o CMakeFiles/plmbase.dir/itk_image_clone.cxx.o CMakeFiles/plmbase.dir/itk_image_create.cxx.o CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o CMakeFiles/plmbase.dir/itk_image_origin.cxx.o CMakeFiles/plmbase.dir/itk_image_region.cxx.o CMakeFiles/plmbase.dir/itk_image_save.cxx.o CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o CMakeFiles/plmbase.dir/itk_image_stats.cxx.o CMakeFiles/plmbase.dir/itk_metadata.cxx.o CMakeFiles/plmbase.dir/itk_pointset.cxx.o CMakeFiles/plmbase.dir/itk_resample.cxx.o CMakeFiles/plmbase.dir/itk_volume_header.cxx.o CMakeFiles/plmbase.dir/itk_warp.cxx.o CMakeFiles/plmbase.dir/mc_dose.cxx.o CMakeFiles/plmbase.dir/metadata.cxx.o CMakeFiles/plmbase.dir/mha_io.cxx.o CMakeFiles/plmbase.dir/nki_io.cxx.o CMakeFiles/plmbase.dir/parameter_parser.cxx.o CMakeFiles/plmbase.dir/plm_file_format.cxx.o CMakeFiles/plmbase.dir/plm_image.cxx.o CMakeFiles/plmbase.dir/plm_image_convert.cxx.o CMakeFiles/plmbase.dir/plm_image_header.cxx.o CMakeFiles/plmbase.dir/plm_image_set.cxx.o CMakeFiles/plmbase.dir/plm_image_type.cxx.o CMakeFiles/plmbase.dir/plm_warp.cxx.o CMakeFiles/plmbase.dir/pointset.cxx.o CMakeFiles/plmbase.dir/pointset_warp.cxx.o CMakeFiles/plmbase.dir/proj_image.cxx.o CMakeFiles/plmbase.dir/proj_image_dir.cxx.o CMakeFiles/plmbase.dir/proj_matrix.cxx.o CMakeFiles/plmbase.dir/proj_volume.cxx.o CMakeFiles/plmbase.dir/pwlut.cxx.o CMakeFiles/plmbase.dir/rasterize_slice.cxx.o CMakeFiles/plmbase.dir/rasterizer.cxx.o CMakeFiles/plmbase.dir/raw_pointset.cxx.o CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o CMakeFiles/plmbase.dir/rpl_volume.cxx.o CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o CMakeFiles/plmbase.dir/rt_study.cxx.o CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o CMakeFiles/plmbase.dir/rtog_io.cxx.o CMakeFiles/plmbase.dir/rtss.cxx.o CMakeFiles/plmbase.dir/rtss_contour.cxx.o CMakeFiles/plmbase.dir/rtss_roi.cxx.o CMakeFiles/plmbase.dir/rtplan.cxx.o CMakeFiles/plmbase.dir/rtplan_beam.cxx.o CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o CMakeFiles/plmbase.dir/segmentation.cxx.o CMakeFiles/plmbase.dir/slice_extract.cxx.o CMakeFiles/plmbase.dir/slice_list.cxx.o CMakeFiles/plmbase.dir/ss_img_extract.cxx.o CMakeFiles/plmbase.dir/ss_list_io.cxx.o CMakeFiles/plmbase.dir/threading.cxx.o CMakeFiles/plmbase.dir/thumbnail.cxx.o CMakeFiles/plmbase.dir/vf.cxx.o CMakeFiles/plmbase.dir/vf_convolve.cxx.o CMakeFiles/plmbase.dir/vf_jacobian.cxx.o CMakeFiles/plmbase.dir/vf_stats.cxx.o CMakeFiles/plmbase.dir/volume.cxx.o CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o CMakeFiles/plmbase.dir/volume_conv.cxx.o CMakeFiles/plmbase.dir/volume_fill.cxx.o CMakeFiles/plmbase.dir/volume_gaussian.cxx.o CMakeFiles/plmbase.dir/volume_grad.cxx.o CMakeFiles/plmbase.dir/volume_header.cxx.o CMakeFiles/plmbase.dir/volume_limit.cxx.o CMakeFiles/plmbase.dir/volume_resample.cxx.o CMakeFiles/plmbase.dir/volume_stats.cxx.o CMakeFiles/plmbase.dir/xform.cxx.o CMakeFiles/plmbase.dir/xform_convert.cxx.o CMakeFiles/plmbase.dir/xform_legacy.cxx.o CMakeFiles/plmbase.dir/xform_point.cxx.o CMakeFiles/plmbase.dir/xio_ct.cxx.o CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o CMakeFiles/plmbase.dir/xio_demographic.cxx.o CMakeFiles/plmbase.dir/xio_dir.cxx.o CMakeFiles/plmbase.dir/xio_dose.cxx.o CMakeFiles/plmbase.dir/xio_patient.cxx.o CMakeFiles/plmbase.dir/xio_plan.cxx.o CMakeFiles/plmbase.dir/xio_structures.cxx.o CMakeFiles/plmbase.dir/xio_studyset.cxx.o CMakeFiles/plmbase.dir/xpm.cxx.o CMakeFiles/plmbase.dir/dcmtk_file.cxx.o CMakeFiles/plmbase.dir/dcmtk_image.cxx.o CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o CMakeFiles/plmbase.dir/dcmtk_module.cxx.o CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o CMakeFiles/plmbase.dir/dcmtk_series.cxx.o CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o CMakeFiles/plmbase.dir/dcmtk_util.cxx.o CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libnkidecompress.a ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm -lpthread -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -ljpeg -lpng -lblas -llapack -lsqlite3 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 -lz /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread 
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/cmake -E cmake_symlink_library ../../../libplmbase.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmbase.so
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 40%] Built target plmbase
make  -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util/CMakeFiles/plmutil.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o
[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o
[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -MF CMakeFiles/plmutil.dir/bspline_correspond.cxx.o.d -o CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/bspline_correspond.cxx
[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o -MF CMakeFiles/plmutil.dir/dice_statistics.cxx.o.d -o CMakeFiles/plmutil.dir/dice_statistics.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/dice_statistics.cxx
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -MF CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o.d -o CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/dicom_sro_save.cxx
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o -MF CMakeFiles/plmutil.dir/distance_map.cxx.o.d -o CMakeFiles/plmutil.dir/distance_map.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/distance_map.cxx
[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o -MF CMakeFiles/plmutil.dir/diff.cxx.o.d -o CMakeFiles/plmutil.dir/diff.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/diff.cxx
[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o -MF CMakeFiles/plmutil.dir/dvh.cxx.o.d -o CMakeFiles/plmutil.dir/dvh.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/dvh.cxx
[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -MF CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o.d -o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/gamma_dose_comparison.cxx
[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -MF CMakeFiles/plmutil.dir/geometry_chooser.cxx.o.d -o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/geometry_chooser.cxx
[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -MF CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o.d -o CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/hausdorff_distance.cxx
[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o -MF CMakeFiles/plmutil.dir/image_boundary.cxx.o.d -o CMakeFiles/plmutil.dir/image_boundary.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/image_boundary.cxx
[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o -MF CMakeFiles/plmutil.dir/image_center.cxx.o.d -o CMakeFiles/plmutil.dir/image_center.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/image_center.cxx
[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o -MF CMakeFiles/plmutil.dir/itk_adjust.cxx.o.d -o CMakeFiles/plmutil.dir/itk_adjust.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_adjust.cxx
[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o -MF CMakeFiles/plmutil.dir/itk_crop.cxx.o.d -o CMakeFiles/plmutil.dir/itk_crop.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_crop.cxx
[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -MF CMakeFiles/plmutil.dir/itk_distance_map.cxx.o.d -o CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_distance_map.cxx
[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o -MF CMakeFiles/plmutil.dir/itk_gabor.cxx.o.d -o CMakeFiles/plmutil.dir/itk_gabor.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_gabor.cxx
[ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o -MF CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o.d -o CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_histogram_matching.cxx
[ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_intersect.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_intersect.cxx.o -MF CMakeFiles/plmutil.dir/itk_intersect.cxx.o.d -o CMakeFiles/plmutil.dir/itk_intersect.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_intersect.cxx
[ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o -MF CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o.d -o CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_local_intensity_correction.cxx
[ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_mask.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_mask.cxx.o -MF CMakeFiles/plmutil.dir/itk_mask.cxx.o.d -o CMakeFiles/plmutil.dir/itk_mask.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_mask.cxx
[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_scale.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_scale.cxx.o -MF CMakeFiles/plmutil.dir/itk_scale.cxx.o.d -o CMakeFiles/plmutil.dir/itk_scale.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_scale.cxx
[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_threshold.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_threshold.cxx.o -MF CMakeFiles/plmutil.dir/itk_threshold.cxx.o.d -o CMakeFiles/plmutil.dir/itk_threshold.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_threshold.cxx
[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_union.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_union.cxx.o -MF CMakeFiles/plmutil.dir/itk_union.cxx.o.d -o CMakeFiles/plmutil.dir/itk_union.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/itk_union.cxx
[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/landmark_diff.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/landmark_diff.cxx.o -MF CMakeFiles/plmutil.dir/landmark_diff.cxx.o.d -o CMakeFiles/plmutil.dir/landmark_diff.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/landmark_diff.cxx
[ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/proj_image_filter.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/proj_image_filter.cxx.o -MF CMakeFiles/plmutil.dir/proj_image_filter.cxx.o.d -o CMakeFiles/plmutil.dir/proj_image_filter.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/proj_image_filter.cxx
[ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/plm_series.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/plm_series.cxx.o -MF CMakeFiles/plmutil.dir/plm_series.cxx.o.d -o CMakeFiles/plmutil.dir/plm_series.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/plm_series.cxx
[ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/plm_study.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/plm_study.cxx.o -MF CMakeFiles/plmutil.dir/plm_study.cxx.o.d -o CMakeFiles/plmutil.dir/plm_study.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/plm_study.cxx
[ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/rt_study_warp.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/rt_study_warp.cxx.o -MF CMakeFiles/plmutil.dir/rt_study_warp.cxx.o.d -o CMakeFiles/plmutil.dir/rt_study_warp.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/rt_study_warp.cxx
[ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/sift.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/sift.cxx.o -MF CMakeFiles/plmutil.dir/sift.cxx.o.d -o CMakeFiles/plmutil.dir/sift.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/sift.cxx
[ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/simplify_points.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/simplify_points.cxx.o -MF CMakeFiles/plmutil.dir/simplify_points.cxx.o.d -o CMakeFiles/plmutil.dir/simplify_points.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/simplify_points.cxx
[ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ss_img_stats.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/ss_img_stats.cxx.o -MF CMakeFiles/plmutil.dir/ss_img_stats.cxx.o.d -o CMakeFiles/plmutil.dir/ss_img_stats.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/ss_img_stats.cxx
[ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_mha.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_mha.cxx.o -MF CMakeFiles/plmutil.dir/synthetic_mha.cxx.o.d -o CMakeFiles/plmutil.dir/synthetic_mha.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/synthetic_mha.cxx
[ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_vf.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_vf.cxx.o -MF CMakeFiles/plmutil.dir/synthetic_vf.cxx.o.d -o CMakeFiles/plmutil.dir/synthetic_vf.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/synthetic_vf.cxx
[ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/threshbox.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/threshbox.cxx.o -MF CMakeFiles/plmutil.dir/threshbox.cxx.o.d -o CMakeFiles/plmutil.dir/threshbox.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/threshbox.cxx
[ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_adjust.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/volume_adjust.cxx.o -MF CMakeFiles/plmutil.dir/volume_adjust.cxx.o.d -o CMakeFiles/plmutil.dir/volume_adjust.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/volume_adjust.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/threshbox.cxx: In function ‘void do_overlap_fraction(Threshbox_parms*)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/threshbox.cxx:257:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  257 |         fscanf(fp1, "%s", tmpbuf);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/threshbox.cxx:258:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  258 |         fscanf(fp1, "%f %f %f", &phys_max1[0], &phys_max1[1], &phys_max1[2]);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/threshbox.cxx:266:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  266 |         fscanf(fp2, "%s", tmpbuf);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/threshbox.cxx:267:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  267 |         fscanf(fp2, "%f %f %f", &phys_max2[0], &phys_max2[1], &phys_max2[2]);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o -MF CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o.d -o CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/volume_boundary_type.cxx
[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/xf_invert.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/xf_invert.cxx.o -MF CMakeFiles/plmutil.dir/xf_invert.cxx.o.d -o CMakeFiles/plmutil.dir/xf_invert.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/xf_invert.cxx
[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/zcrop.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/zcrop.cxx.o -MF CMakeFiles/plmutil.dir/zcrop.cxx.o.d -o CMakeFiles/plmutil.dir/zcrop.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/zcrop.cxx
[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gabor.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/gabor.cxx.o -MF CMakeFiles/plmutil.dir/gabor.cxx.o.d -o CMakeFiles/plmutil.dir/gabor.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/gabor.cxx
[ 51%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ramp_filter.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/ramp_filter.cxx.o -MF CMakeFiles/plmutil.dir/ramp_filter.cxx.o.d -o CMakeFiles/plmutil.dir/ramp_filter.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/ramp_filter.cxx
[ 51%] Linking CXX shared library ../../../libplmutil.so
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmutil.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -shared -Wl,-soname,libplmutil.so.1.9 -o ../../../libplmutil.so.1.9 CMakeFiles/plmutil.dir/bspline_correspond.cxx.o CMakeFiles/plmutil.dir/dice_statistics.cxx.o CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o CMakeFiles/plmutil.dir/distance_map.cxx.o CMakeFiles/plmutil.dir/diff.cxx.o CMakeFiles/plmutil.dir/dvh.cxx.o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o CMakeFiles/plmutil.dir/image_boundary.cxx.o CMakeFiles/plmutil.dir/image_center.cxx.o CMakeFiles/plmutil.dir/itk_adjust.cxx.o CMakeFiles/plmutil.dir/itk_crop.cxx.o CMakeFiles/plmutil.dir/itk_distance_map.cxx.o CMakeFiles/plmutil.dir/itk_gabor.cxx.o CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o CMakeFiles/plmutil.dir/itk_intersect.cxx.o CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o CMakeFiles/plmutil.dir/itk_mask.cxx.o CMakeFiles/plmutil.dir/itk_scale.cxx.o CMakeFiles/plmutil.dir/itk_threshold.cxx.o CMakeFiles/plmutil.dir/itk_union.cxx.o CMakeFiles/plmutil.dir/landmark_diff.cxx.o CMakeFiles/plmutil.dir/proj_image_filter.cxx.o CMakeFiles/plmutil.dir/plm_series.cxx.o CMakeFiles/plmutil.dir/plm_study.cxx.o CMakeFiles/plmutil.dir/rt_study_warp.cxx.o CMakeFiles/plmutil.dir/sift.cxx.o CMakeFiles/plmutil.dir/simplify_points.cxx.o CMakeFiles/plmutil.dir/ss_img_stats.cxx.o CMakeFiles/plmutil.dir/synthetic_mha.cxx.o CMakeFiles/plmutil.dir/synthetic_vf.cxx.o CMakeFiles/plmutil.dir/threshbox.cxx.o CMakeFiles/plmutil.dir/volume_adjust.cxx.o CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o CMakeFiles/plmutil.dir/xf_invert.cxx.o CMakeFiles/plmutil.dir/zcrop.cxx.o CMakeFiles/plmutil.dir/gabor.cxx.o CMakeFiles/plmutil.dir/ramp_filter.cxx.o   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  -lfftw3f -lfftw3 ../../../libdevillard.a ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lnsl -lblas -llapack -lsqlite3 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ljpeg -lpng -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -ldl /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lpthread -lm ../../../libnkidecompress.a /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 -lz /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread 
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/cmake -E cmake_symlink_library ../../../libplmutil.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmutil.so
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 51%] Built target plmutil
make  -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/depend
make  -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/depend
make  -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/DependInfo.cmake --color=
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/DependInfo.cmake --color=
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build
make  -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 51%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o
[ 51%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o
[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -MF CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o.d -o CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/bowtie_correction.cxx
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -fopenmp -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/drr.cxx
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o -MF CMakeFiles/plmdose.dir/beam_calc.cxx.o.d -o CMakeFiles/plmdose.dir/beam_calc.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_calc.cxx
[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o -MF CMakeFiles/plmregister.dir/bspline.cxx.o.d -o CMakeFiles/plmregister.dir/bspline.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline.cxx
[ 53%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr_options.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/drr_options.cxx
[ 53%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/drr_trilin.cxx
[ 53%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -MF CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_landmarks.cxx
[ 53%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o -MF CMakeFiles/plmregister.dir/bspline_gm.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_gm.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_gm.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_calc.cxx: In member function ‘bool Beam_calc::load(const char*)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_calc.cxx:194:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  194 |     fgets (linebuf, 128, fp);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~
[ 53%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -fopenmp -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o -MF CMakeFiles/plmreconstruct.dir/fdk.cxx.o.d -o CMakeFiles/plmreconstruct.dir/fdk.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/fdk.cxx
[ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o -MF CMakeFiles/plmregister.dir/bspline_mi.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_mi.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_mi.cxx
[ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o -MF CMakeFiles/plmregister.dir/bspline_mse.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_mse.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_mse.cxx
[ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -MF CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o.d -o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/fdk_util.cxx
[ 55%] Linking CXX shared library ../../../libplmreconstruct.so
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmreconstruct.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -shared -Wl,-soname,libplmreconstruct.so.1.9 -o ../../../libplmreconstruct.so.1.9 CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o CMakeFiles/plmreconstruct.dir/drr.cxx.o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o CMakeFiles/plmreconstruct.dir/fdk.cxx.o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3_threads -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -lpthread -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a 
[ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o -MF CMakeFiles/plmdose.dir/beam_map.cxx.o.d -o CMakeFiles/plmdose.dir/beam_map.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/beam_map.cxx
[ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o -MF CMakeFiles/plmdose.dir/bragg_curve.cxx.o.d -o CMakeFiles/plmdose.dir/bragg_curve.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/bragg_curve.cxx
[ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o -MF CMakeFiles/plmdose.dir/compute_dose.cxx.o.d -o CMakeFiles/plmdose.dir/compute_dose.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/compute_dose.cxx
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_symlink_library ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 55%] Built target plmreconstruct
[ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -MF CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o.d -o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/dose_volume_functions.cxx
[ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize.cxx
[ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_lbfgsb.cxx
[ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_liblbfgs.cxx
[ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o -MF CMakeFiles/plmdose.dir/particle_type.cxx.o.d -o CMakeFiles/plmdose.dir/particle_type.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/particle_type.cxx
[ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -MF CMakeFiles/plmdose.dir/rt_beam_model.cxx.o.d -o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_beam_model.cxx
[ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o -MF CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o.d -o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx
[ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_nlopt.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx: In member function ‘bool Rt_depth_dose::load(const char*)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:64:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   64 |     fgets (linebuf, 128, fp);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx: In member function ‘bool Rt_depth_dose::load_xio(const char*)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:86:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   86 |         fgets (linebuf, 128, fp);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:90:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   90 |     fgets (linebuf, 128, fp);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:103:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  103 |         fgets (linebuf, 128, fp);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:114:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  114 |         fgets (linebuf, 128, fp);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:125:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  125 |         fgets (linebuf, 128, fp);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~
[ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_optimize_steepest.cxx
[ 58%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o -MF CMakeFiles/plmdose.dir/rt_dij.cxx.o.d -o CMakeFiles/plmdose.dir/rt_dij.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_dij.cxx
[ 58%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o -MF CMakeFiles/plmdose.dir/rt_lut.cxx.o.d -o CMakeFiles/plmdose.dir/rt_lut.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_lut.cxx
[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o -MF CMakeFiles/plmregister.dir/bspline_parms.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_parms.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_parms.cxx
[ 59%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -MF CMakeFiles/plmdose.dir/rt_spot_map.cxx.o.d -o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_spot_map.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_dij.cxx: In member function ‘void Rt_dij::dump(const string&) const’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_dij.cxx:51:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
   51 |             fprintf (fp, "%d %f\n", c->index, c->dose);
      |                           ~^        ~~~~~~~~
      |                            |           |
      |                            int         long unsigned int
      |                           %ld
[ 59%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o -MF CMakeFiles/plmdose.dir/rt_mebs.cxx.o.d -o CMakeFiles/plmdose.dir/rt_mebs.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_mebs.cxx
[ 60%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o -MF CMakeFiles/plmdose.dir/rt_parms.cxx.o.d -o CMakeFiles/plmdose.dir/rt_parms.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_parms.cxx
[ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o -MF CMakeFiles/plmregister.dir/bspline_score.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_score.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_score.cxx
[ 60%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o -MF CMakeFiles/plmdose.dir/plan_calc.cxx.o.d -o CMakeFiles/plmdose.dir/plan_calc.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_mebs.cxx: In member function ‘void Rt_mebs::load_beamlet_map(Aperture::Pointer&)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1129:52: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
 1129 |             printf("beamlet line number expected: %d, beamlet line detected: %d.\n", ap->get_dim(1), line_number);
      |                                                   ~^                                 ~~~~~~~~~~~~~~
      |                                                    |                                            |
      |                                                    int                                          plm_long {aka long int}
      |                                                   %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1180:56: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
 1180 |             printf("line %d: beamlet number expected: %d, beamlet number detected: %d.\n", line_number, ap->get_dim(0), beamlet_number);
      |                                                       ~^                                                ~~~~~~~~~~~~~~
      |                                                        |                                                           |
      |                                                        int                                                         plm_long {aka long int}
      |                                                       %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1189:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
 1189 |         printf("beamlet line number expected: %d, beamlet line detected: %d.\n", ap->get_dim(1), line_number);
      |                                               ~^                                 ~~~~~~~~~~~~~~
      |                                                |                                            |
      |                                                int                                          plm_long {aka long int}
      |                                               %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_mebs.cxx: In member function ‘void Rt_mebs::compute_particle_number_matrix_from_target_active(Rpl_volume*, std::vector<double>&, std::vector<double>&)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1213:33: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
 1213 |         printf("Aperture size: %d, min depth map size: %d, max depth map size: %d.\n", rpl_vol->get_aperture()->get_dim(0) * rpl_vol->get_aperture()->get_dim(1), (int) wepl_min.size(), (int) wepl_max.size());
      |                                ~^                                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                 |                                                                                          |
      |                                 int                                                                                        plm_long {aka long int}
      |                                %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_mebs.cxx: In member function ‘void Rt_mebs::export_as_txt(const string&, Aperture::Pointer)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1385:18: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
 1385 |     printf ("Ap %d %d\n", ap->get_dim(0), ap->get_dim(1));
      |                 ~^        ~~~~~~~~~~~~~~
      |                  |                   |
      |                  int                 plm_long {aka long int}
      |                 %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1385:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
 1385 |     printf ("Ap %d %d\n", ap->get_dim(0), ap->get_dim(1));
      |                    ~^                     ~~~~~~~~~~~~~~
      |                     |                                |
      |                     int                              plm_long {aka long int}
      |                    %ld
[ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o -MF CMakeFiles/plmregister.dir/bspline_stage.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_stage.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_stage.cxx
[ 60%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o -MF CMakeFiles/plmdose.dir/rt_sigma.cxx.o.d -o CMakeFiles/plmdose.dir/rt_sigma.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/rt_sigma.cxx
[ 61%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o -MF CMakeFiles/plmdose.dir/wed_parms.cxx.o.d -o CMakeFiles/plmdose.dir/wed_parms.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/wed_parms.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx: In member function ‘void Plan_calc::normalize_beam_dose(Beam_calc*)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx:424:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
  424 |                 printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1));
      |                                               ~^                                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                                |                                                                                  |
      |                                                int                                                                                plm_long {aka long int}
      |                                               %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx:424:52: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
  424 |                 printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1));
      |                                                   ~^                                                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                                    |                                                                                                                |
      |                                                    int                                                                                                              plm_long {aka long int}
      |                                                   %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx:438:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
  438 |                 printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1));
      |                                               ~^                                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                                |                                                                                  |
      |                                                int                                                                                plm_long {aka long int}
      |                                               %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx:438:52: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
  438 |                 printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1));
      |                                                   ~^                                                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                                    |                                                                                                                |
      |                                                    int                                                                                                              plm_long {aka long int}
      |                                                   %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx:452:44: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
  452 |             printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1));
      |                                           ~^                                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                            |                                                                                  |
      |                                            int                                                                                plm_long {aka long int}
      |                                           %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx:452:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=]
  452 |             printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1));
      |                                               ~^                                                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                                |                                                                                                                |
      |                                                int                                                                                                              plm_long {aka long int}
      |                                               %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx: In member function ‘void Plan_calc::print_verif()’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx:759:73: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=]
  759 |     printf("\n i_res: "); for (int i = 0; i < num_beams; i++) {printf("%d %d ** ", d_ptr->beam_storage[i]->get_aperture()->get_dim()[0], d_ptr->beam_storage[i]->get_aperture()->get_dim()[1]);}
      |                                                                        ~^          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                                                         |                                                             |
      |                                                                         int                                                           long int
      |                                                                        %ld
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/plan_calc.cxx:759:76: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=]
  759 |     printf("\n i_res: "); for (int i = 0; i < num_beams; i++) {printf("%d %d ** ", d_ptr->beam_storage[i]->get_aperture()->get_dim()[0], d_ptr->beam_storage[i]->get_aperture()->get_dim()[1]);}
      |                                                                           ~^                                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                                                            |                                                                                                                |
      |                                                                            int                                                                                                              long int
      |                                                                           %ld
[ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o -MF CMakeFiles/plmregister.dir/bspline_state.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_state.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_state.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/wed_parms.cxx: In member function ‘int Wed_parms::set_key_val(const char*, const char*, int)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/wed_parms.cxx:237:32: warning: format ‘%i’ expects argument of type ‘int*’, but argument 3 has type ‘plm_long*’ {aka ‘long int*’} [-Wformat=]
  237 |             if (sscanf (val, "%i %i",
      |                               ~^
      |                                |
      |                                int*
      |                               %li
  238 |                     &(this->ires[0]),
      |                     ~~~~~~~~~~~~~~~~
      |                     |
      |                     plm_long* {aka long int*}
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose/wed_parms.cxx:237:35: warning: format ‘%i’ expects argument of type ‘int*’, but argument 4 has type ‘plm_long*’ {aka ‘long int*’} [-Wformat=]
  237 |             if (sscanf (val, "%i %i",
      |                                  ~^
      |                                   |
      |                                   int*
      |                                  %li
  238 |                     &(this->ires[0]),
  239 |                     &(this->ires[1])) != 2)
      |                     ~~~~~~~~~~~~~~~~
      |                     |
      |                     plm_long* {aka long int*}
[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_regularize.cxx
[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -fopenmp -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_regularize_analytic.cxx
[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_regularize_numeric.cxx
[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/bspline_regularize_semi_analytic.cxx
[ 62%] Linking CXX shared library ../../../libplmdose.so
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmdose.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -shared -Wl,-soname,libplmdose.so.1.9 -o ../../../libplmdose.so.1.9 CMakeFiles/plmdose.dir/beam_calc.cxx.o CMakeFiles/plmdose.dir/beam_map.cxx.o CMakeFiles/plmdose.dir/bragg_curve.cxx.o CMakeFiles/plmdose.dir/compute_dose.cxx.o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o CMakeFiles/plmdose.dir/particle_type.cxx.o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o CMakeFiles/plmdose.dir/rt_dij.cxx.o CMakeFiles/plmdose.dir/rt_lut.cxx.o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o CMakeFiles/plmdose.dir/rt_mebs.cxx.o CMakeFiles/plmdose.dir/rt_parms.cxx.o CMakeFiles/plmdose.dir/plan_calc.cxx.o CMakeFiles/plmdose.dir/rt_sigma.cxx.o CMakeFiles/plmdose.dir/wed_parms.cxx.o   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../../../libplmutil.so.1.9 ../../../libspecfun.a ../../../libplmbase.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3_threads -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread ../../../libplmsys.so.1.9 -lpthread -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a 
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_symlink_library ../../../libplmdose.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmdose.so
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o -MF CMakeFiles/plmregister.dir/demons.cxx.o.d -o CMakeFiles/plmregister.dir/demons.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/demons.cxx
[ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o -MF CMakeFiles/plmregister.dir/demons_cpu.cxx.o.d -o CMakeFiles/plmregister.dir/demons_cpu.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/demons_cpu.cxx
[ 63%] Built target plmdose
[ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_state.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons_state.cxx.o -MF CMakeFiles/plmregister.dir/demons_state.cxx.o.d -o CMakeFiles/plmregister.dir/demons_state.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/demons_state.cxx
[ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/gpuit_demons.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -MF CMakeFiles/plmregister.dir/gpuit_demons.cxx.o.d -o CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/gpuit_demons.cxx
[ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/groupwise_parms.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/groupwise_parms.cxx.o -MF CMakeFiles/plmregister.dir/groupwise_parms.cxx.o.d -o CMakeFiles/plmregister.dir/groupwise_parms.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/groupwise_parms.cxx
[ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/histogram.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/histogram.cxx.o -MF CMakeFiles/plmregister.dir/histogram.cxx.o.d -o CMakeFiles/plmregister.dir/histogram.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/histogram.cxx
[ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_align_center.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_align_center.cxx.o -MF CMakeFiles/plmregister.dir/itk_align_center.cxx.o.d -o CMakeFiles/plmregister.dir/itk_align_center.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_align_center.cxx
[ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_demons.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_demons.cxx
[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -MF CMakeFiles/plmregister.dir/itk_demons_util.cxx.o.d -o CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_demons_util.cxx
[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_diff_demons.cxx
[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_fsf_demons.cxx
[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_log_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_log_demons.cxx
[ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_sym_log_demons.cxx
[ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -MF CMakeFiles/plmregister.dir/itk_optimizer.cxx.o.d -o CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_optimizer.cxx
[ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o -MF CMakeFiles/plmregister.dir/itk_registration.cxx.o.d -o CMakeFiles/plmregister.dir/itk_registration.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_registration.cxx
[ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -MF CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o.d -o CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_registration_observer.cxx
[ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o -MF CMakeFiles/plmregister.dir/itk_tps.cxx.o.d -o CMakeFiles/plmregister.dir/itk_tps.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/itk_tps.cxx
[ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o -MF CMakeFiles/plmregister.dir/joint_histogram.cxx.o.d -o CMakeFiles/plmregister.dir/joint_histogram.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/joint_histogram.cxx
[ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o -MF CMakeFiles/plmregister.dir/landmark_warp.cxx.o.d -o CMakeFiles/plmregister.dir/landmark_warp.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/landmark_warp.cxx
[ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o -MF CMakeFiles/plmregister.dir/metric_parms.cxx.o.d -o CMakeFiles/plmregister.dir/metric_parms.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/metric_parms.cxx
[ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o -MF CMakeFiles/plmregister.dir/metric_state.cxx.o.d -o CMakeFiles/plmregister.dir/metric_state.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/metric_state.cxx
[ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o -MF CMakeFiles/plmregister.dir/process_parms.cxx.o.d -o CMakeFiles/plmregister.dir/process_parms.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/process_parms.cxx
[ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -MF CMakeFiles/plmregister.dir/rbf_cluster.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/rbf_cluster.cxx
[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -MF CMakeFiles/plmregister.dir/rbf_gauss.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/rbf_gauss.cxx
[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -MF CMakeFiles/plmregister.dir/rbf_wendland.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/rbf_wendland.cxx
[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o -MF CMakeFiles/plmregister.dir/registration.cxx.o.d -o CMakeFiles/plmregister.dir/registration.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/registration.cxx
[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o -MF CMakeFiles/plmregister.dir/registration_data.cxx.o.d -o CMakeFiles/plmregister.dir/registration_data.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/registration_data.cxx
[ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_parms.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_parms.cxx.o -MF CMakeFiles/plmregister.dir/registration_parms.cxx.o.d -o CMakeFiles/plmregister.dir/registration_parms.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/registration_parms.cxx
[ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_resample.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_resample.cxx.o -MF CMakeFiles/plmregister.dir/registration_resample.cxx.o.d -o CMakeFiles/plmregister.dir/registration_resample.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/registration_resample.cxx
[ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_util.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_util.cxx.o -MF CMakeFiles/plmregister.dir/registration_util.cxx.o.d -o CMakeFiles/plmregister.dir/registration_util.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/registration_util.cxx
[ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/shared_parms.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/shared_parms.cxx.o -MF CMakeFiles/plmregister.dir/shared_parms.cxx.o.d -o CMakeFiles/plmregister.dir/shared_parms.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/shared_parms.cxx
[ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -MF CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o.d -o CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/similarity_metric_type.cxx
[ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o -MF CMakeFiles/plmregister.dir/stage_parms.cxx.o.d -o CMakeFiles/plmregister.dir/stage_parms.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/stage_parms.cxx
[ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -MF CMakeFiles/plmregister.dir/translation_grid_search.cxx.o.d -o CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/translation_grid_search.cxx
[ 72%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mi.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mi.cxx.o -MF CMakeFiles/plmregister.dir/translation_mi.cxx.o.d -o CMakeFiles/plmregister.dir/translation_mi.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/translation_mi.cxx
[ 72%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mse.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mse.cxx.o -MF CMakeFiles/plmregister.dir/translation_mse.cxx.o.d -o CMakeFiles/plmregister.dir/translation_mse.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/translation_mse.cxx
[ 72%] Linking CXX shared library ../../../libplmregister.so
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmregister.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -shared -Wl,-soname,libplmregister.so.1.9 -o ../../../libplmregister.so.1.9 CMakeFiles/plmregister.dir/bspline.cxx.o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o CMakeFiles/plmregister.dir/bspline_gm.cxx.o CMakeFiles/plmregister.dir/bspline_mi.cxx.o CMakeFiles/plmregister.dir/bspline_mse.cxx.o CMakeFiles/plmregister.dir/bspline_optimize.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o CMakeFiles/plmregister.dir/bspline_parms.cxx.o CMakeFiles/plmregister.dir/bspline_score.cxx.o CMakeFiles/plmregister.dir/bspline_stage.cxx.o CMakeFiles/plmregister.dir/bspline_state.cxx.o CMakeFiles/plmregister.dir/bspline_regularize.cxx.o CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o CMakeFiles/plmregister.dir/demons.cxx.o CMakeFiles/plmregister.dir/demons_cpu.cxx.o CMakeFiles/plmregister.dir/demons_state.cxx.o CMakeFiles/plmregister.dir/gpuit_demons.cxx.o CMakeFiles/plmregister.dir/groupwise_parms.cxx.o CMakeFiles/plmregister.dir/histogram.cxx.o CMakeFiles/plmregister.dir/itk_align_center.cxx.o CMakeFiles/plmregister.dir/itk_demons.cxx.o CMakeFiles/plmregister.dir/itk_demons_util.cxx.o CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o CMakeFiles/plmregister.dir/itk_optimizer.cxx.o CMakeFiles/plmregister.dir/itk_registration.cxx.o CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o CMakeFiles/plmregister.dir/itk_tps.cxx.o CMakeFiles/plmregister.dir/joint_histogram.cxx.o CMakeFiles/plmregister.dir/landmark_warp.cxx.o CMakeFiles/plmregister.dir/metric_parms.cxx.o CMakeFiles/plmregister.dir/metric_state.cxx.o CMakeFiles/plmregister.dir/process_parms.cxx.o CMakeFiles/plmregister.dir/rbf_cluster.cxx.o CMakeFiles/plmregister.dir/rbf_gauss.cxx.o CMakeFiles/plmregister.dir/rbf_wendland.cxx.o CMakeFiles/plmregister.dir/registration.cxx.o CMakeFiles/plmregister.dir/registration_data.cxx.o CMakeFiles/plmregister.dir/registration_parms.cxx.o CMakeFiles/plmregister.dir/registration_resample.cxx.o CMakeFiles/plmregister.dir/registration_util.cxx.o CMakeFiles/plmregister.dir/shared_parms.cxx.o CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o CMakeFiles/plmregister.dir/stage_parms.cxx.o CMakeFiles/plmregister.dir/translation_grid_search.cxx.o CMakeFiles/plmregister.dir/translation_mi.cxx.o CMakeFiles/plmregister.dir/translation_mse.cxx.o   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../../../liblbfgs.a ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3_threads -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread ../../../libplmsys.so.1.9 -lpthread -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a 
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/cmake -E cmake_symlink_library ../../../libplmregister.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmregister.so
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 72%] Built target plmregister
make  -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment/CMakeFiles/plmsegment.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o
[ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel.cxx
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_parms.cxx
[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_feature.cxx
[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.cxx
[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_task.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_task.cxx
[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_thumbnailer.cxx
[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/autolabel_trainer.cxx
[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -MF CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o.d -o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/dlib_trainer.cxx
[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o -MF CMakeFiles/plmsegment.dir/mabs.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs.cxx
[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_atlas_selection.cxx
[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_parms.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_parms.cxx
[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_seg_weights.cxx
[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_stats.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_stats.cxx
[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_staple.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_staple.cxx
[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -fopenmp -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_vote.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_vote.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/mabs_vote.cxx
[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o -MF CMakeFiles/plmsegment.dir/ml_convert.cxx.o.d -o CMakeFiles/plmsegment.dir/ml_convert.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/ml_convert.cxx
[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/segment_body.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/segment_body.cxx.o -MF CMakeFiles/plmsegment.dir/segment_body.cxx.o.d -o CMakeFiles/plmsegment.dir/segment_body.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment/segment_body.cxx
[ 77%] Linking CXX shared library ../../../libplmsegment.so
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmsegment.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -shared -Wl,-soname,libplmsegment.so.1.9 -o ../../../libplmsegment.so.1.9 CMakeFiles/plmsegment.dir/autolabel.cxx.o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o CMakeFiles/plmsegment.dir/mabs.cxx.o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o CMakeFiles/plmsegment.dir/mabs_parms.cxx.o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o CMakeFiles/plmsegment.dir/mabs_vote.cxx.o CMakeFiles/plmsegment.dir/ml_convert.cxx.o CMakeFiles/plmsegment.dir/segment_body.cxx.o   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../../../libplmregister.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 ../../../liblbfgs.a 
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/cmake -E cmake_symlink_library ../../../libplmsegment.so.1.9 ../../../libplmsegment.so.1.9 ../../../libplmsegment.so
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 77%] Built target plmsegment
make  -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend
make  -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend
make  -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend
make  -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake --color=
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color=
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color=
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o
[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o -MF CMakeFiles/dicom_info.dir/dicom_info.cxx.o.d -o CMakeFiles/dicom_info.dir/dicom_info.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/dicom_info.cxx
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o -MF CMakeFiles/compute_distance.dir/compute_distance.cxx.o.d -o CMakeFiles/compute_distance.dir/compute_distance.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/compute_distance.cxx
[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -MF CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o.d -o CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/landmark_diff_main.cxx
[ 77%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_add.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_add.cxx
[ 78%] Linking CXX executable ../../../landmark_diff
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/landmark_diff.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -o ../../../landmark_diff   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 78%] Built target landmark_diff
make  -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -MF CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o.d -o CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/merge_vector_fields.cxx
[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o -MF CMakeFiles/compute_distance.dir/closest_point.cxx.o.d -o CMakeFiles/compute_distance.dir/closest_point.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/closest_point.cxx
[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o -MF CMakeFiles/compute_distance.dir/read_obj.cxx.o.d -o CMakeFiles/compute_distance.dir/read_obj.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/read_obj.cxx
[ 79%] Linking CXX executable ../../../compute_distance
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/compute_distance.dir/compute_distance.cxx.o CMakeFiles/compute_distance.dir/closest_point.cxx.o CMakeFiles/compute_distance.dir/read_obj.cxx.o -o ../../../compute_distance   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
[ 80%] Linking CXX executable ../../../dicom_info
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_info.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/dicom_info.dir/dicom_info.cxx.o -o ../../../dicom_info   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 80%] Built target compute_distance
make  -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -MF CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o.d -o CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/shuffle_mha_main.cxx
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 80%] Built target dicom_info
make  -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o -MF CMakeFiles/wed.dir/wed_main.cxx.o.d -o CMakeFiles/wed.dir/wed_main.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/wed_main.cxx
[ 82%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_adjust.cxx
[ 82%] Linking CXX executable ../../../wed
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/wed.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/wed.dir/wed_main.cxx.o -o ../../../wed   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
[ 83%] Linking CXX executable ../../../merge_vfs
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/merge_vfs.dir/link.txt --verbose=1
[ 83%] Linking CXX executable ../../../shuffle_mha
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/shuffle_mha.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -o ../../../merge_vfs   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -o ../../../shuffle_mha   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 83%] Built target wed
make  -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 83%] Building CXX object src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -MF CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o.d -o CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/xvi_archive.cxx
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 83%] Built target shuffle_mha
make  -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 84%] Building CXX object src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o -MF CMakeFiles/check_grad.dir/check_grad.cxx.o.d -o CMakeFiles/check_grad.dir/check_grad.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/check_grad.cxx
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 84%] Built target merge_vfs
make  -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 84%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o -MF CMakeFiles/demons.dir/demons_main.cxx.o.d -o CMakeFiles/demons.dir/demons_main.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/demons_main.cxx
[ 84%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o -MF CMakeFiles/demons.dir/demons_opts.cxx.o.d -o CMakeFiles/demons.dir/demons_opts.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/demons_opts.cxx
[ 85%] Linking CXX executable ../../../demons
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/demons.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/demons.dir/demons_main.cxx.o CMakeFiles/demons.dir/demons_opts.cxx.o -o ../../../demons   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 85%] Built target demons
make  -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 85%] Building CXX object src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o -MF CMakeFiles/dlib_train.dir/dlib_train.cxx.o.d -o CMakeFiles/dlib_train.dir/dlib_train.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/dlib_train.cxx
[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_autolabel_train.cxx
[ 85%] Linking CXX executable ../../../check_grad
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/check_grad.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/check_grad.dir/check_grad.cxx.o -o ../../../check_grad   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 85%] Built target check_grad
make  -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 85%] Building CXX object src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -MF CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o.d -o CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/hnd_to_pfm.cxx
[ 86%] Linking CXX executable ../../../xvi_archive
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/xvi_archive.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -o ../../../xvi_archive   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../libinih.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
[ 86%] Linking CXX executable ../../../hnd_to_pfm
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/hnd_to_pfm.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -o ../../../hnd_to_pfm   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_autolabel.cxx
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 86%] Built target xvi_archive
make  -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 86%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -MF CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o.d -o CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/bragg_curve_main.cxx
[ 86%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -MF CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o.d -o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/bragg_curve_opts.cxx
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 86%] Built target hnd_to_pfm
make  -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 87%] Building CXX object src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o -MF CMakeFiles/sobp.dir/sobp_main.cxx.o.d -o CMakeFiles/sobp.dir/sobp_main.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/sobp_main.cxx
[ 87%] Linking CXX executable ../../../bragg_curve
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/bragg_curve.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -o ../../../bragg_curve   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 87%] Built target bragg_curve
make  -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make  -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 87%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/inih-r29 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -MF CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o.d -o CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/standalone/dicom_uid_main.cxx
[ 87%] Linking CXX executable ../../../dicom_uid
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_uid.dir/link.txt --verbose=1
[ 87%] Linking CXX executable ../../../sobp
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/sobp.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -o ../../../dicom_uid   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/sobp.dir/sobp_main.cxx.o -o ../../../sobp   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 87%] Built target dicom_uid
[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_bbox.cxx
[ 87%] Built target sobp
[ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_benchmark.cxx
[ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_boundary.cxx
[ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_compare.cxx
[ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_compose.cxx
[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_crop.cxx
[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_dice.cxx
[ 90%] Linking CXX executable ../../../dlib_train
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlib_train.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/dlib_train.dir/dlib_train.cxx.o -o ../../../dlib_train   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[ 90%] Built target dlib_train
[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_diff.cxx
[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_dmap.cxx
[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_dose.cxx
[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_drr.cxx
[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_dvh.cxx
[ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_fdk.cxx
[ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_filter.cxx
[ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_gamma.cxx
[ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_header.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_header.cxx
[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_intersect.cxx
[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_jacobian.cxx
[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_lm_warp.cxx
[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_mabs.cxx
[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_mask.cxx
[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_maximum.cxx
[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_ml_convert.cxx
[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_multiply.cxx
[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_probe.cxx
[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_register.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_register.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_register.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_register.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_register.cxx
[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_resample.cxx
[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_scale.cxx
[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_segment.cxx
[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_sift.cxx
[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_stats.cxx
[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_synth.cxx
[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_synth_vf.cxx
[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_threshold.cxx
[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_thumbnail.cxx
[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_union.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_union.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_union.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_union.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_union.cxx
[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_warp.cxx
[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_warp_dij.cxx
[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_warp_pointset.cxx
[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_wed.cxx
[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx
[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xf_convert.cxx
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx: In function ‘void do_command_xio_dvh(int, char**)’:
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:46:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   46 |         fgets(buf, 200, fp); //XiO Dose Volume Histogram
      |         ~~~~~^~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:49:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   49 |         fgets(patientid, 200, fp); // patient ID, abcde1234
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:50:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   50 |         fgets(buf, 200, fp); // plan
      |         ~~~~~^~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:51:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   51 |         fgets(structurename, 200, fp); // structure name
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:52:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   52 |         fgets(buf, 200, fp); // N.NN mm resolution
      |         ~~~~~^~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:54:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   54 |         fgets(buf, 200, fp); // number of bins
      |         ~~~~~^~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:59:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   59 |         fgets(buf, 200, fp); // date
      |         ~~~~~^~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:60:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |         fgets(buf, 200, fp); // table header: min bin dose (cGy), bin volume (cc)
      |         ~~~~~^~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:78:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |             fgets(buf, 200, fp);
      |             ~~~~~^~~~~~~~~~~~~~
/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:72:37: warning: ‘%s’ directive writing up to 254 bytes into a region of size 253 [-Wformat-overflow=]
   72 |         sprintf(outfilename, "%s/%s-%s.txt",output_dir, patientid, structurename);
      |                                     ^~                             ~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:866,
                 from /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:5:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 261) into a destination of size 255
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   40 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/pcmd_xf_invert.cxx
[100%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -MF CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o.d -o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/plastimatch_main.cxx
[100%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/itk-5.1.2 -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/util -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/sys -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/segment -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/register -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/qt -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/dose -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/clp -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/base -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/nSIFT -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/ransac/Common -I/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++14 -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -MF CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o.d -o CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -c /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/src/plastimatch/cli/plastimatch_startup.cxx
[100%] Linking CXX executable ../../../plastimatch
cd /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/plastimatch.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed  -rdynamic -fopenmp CMakeFiles/plastimatch.dir/pcmd_add.cxx.o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o CMakeFiles/plastimatch.dir/pcmd_header.cxx.o CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o CMakeFiles/plastimatch.dir/pcmd_register.cxx.o CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o CMakeFiles/plastimatch.dir/pcmd_union.cxx.o CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -o ../../../plastimatch   -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/libs/specfun  -L/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu  -L/usr/include  ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff -lcharls /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmect.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../clp/libplmclp.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
[100%] Built target plastimatch
make[2]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1'
dh_auto_test
	cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=--verbose ARGS\+=-j4
make[2]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j4
UpdateCTestConfiguration  from :/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/DartConfiguration.tcl
Parse Config file:/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/DartConfiguration.tcl
 Add coverage exclude regular expressions.
UpdateCTestConfiguration  from :/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/DartConfiguration.tcl
Parse Config file:/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/DartConfiguration.tcl
Test project /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu
Constructing a list of tests
Ignore test: demons-cuda-a
Ignore test: demons-cuda-a-check
Ignore test: drr-d
Ignore test: drr-d-stats
Ignore test: drr-d-check
Ignore test: drr-cuda
Ignore test: drr-cuda-stats
Ignore test: drr-cuda-check
Ignore test: drr-opencl
Ignore test: drr-opencl-stats
Ignore test: drr-opencl-check
Ignore test: fdk-cpu-b
Ignore test: fdk-cpu-b-stats
Ignore test: fdk-cpu-b-check
Ignore test: fdk-cpu-c
Ignore test: fdk-cpu-c-stats
Ignore test: fdk-cpu-c-check
Ignore test: fdk-cuda-a
Ignore test: fdk-cuda-a-stats
Ignore test: fdk-cuda-a-check
Ignore test: fdk-opencl-a
Ignore test: fdk-opencl-a-stats
Ignore test: fdk-opencl-a-check
Ignore test: fdk-tutorial-a
Ignore test: fdk-tutorial-b
Ignore test: fdk-tutorial-b-stats-1
Ignore test: fdk-tutorial-b-check-1
Ignore test: fdk-tutorial-c
Ignore test: fdk-tutorial-c-stats-1
Ignore test: fdk-tutorial-c-check-1
Ignore test: plm-convert-rtog-corvus-a
Ignore test: plm-convert-dicom-aw-a
Ignore test: plm-convert-dicom-aw-a-stats
Ignore test: plm-convert-dicom-aw-a-check
Ignore test: plm-convert-dicom-aw-b
Ignore test: plm-convert-dicom-corvus-a
Ignore test: plm-convert-dicom-pinnacle-a
Ignore test: plm-convert-dicom-xio-a
Ignore test: plm-convert-dicom-xio-a-stats
Ignore test: plm-convert-dicom-xio-a-check
Ignore test: plm-convert-dicom-xio-b
Ignore test: plm-convert-dicom-xio-b-stats
Ignore test: plm-convert-dicom-xio-b-check
Ignore test: plm-convert-dicom-xio-c
Ignore test: plm-convert-dicom-xio-c-stats
Ignore test: plm-convert-dicom-xio-c-check
Ignore test: plm-convert-dicom-xio-d
Ignore test: plm-convert-dicom-xio-d-stats
Ignore test: plm-convert-dicom-xio-d-check
Ignore test: plm-convert-dicom-xio-e
Ignore test: plm-convert-dicom-xio-f
Ignore test: plm-convert-dicom-xio-f-stats
Ignore test: plm-convert-dicom-xio-f-check
Ignore test: plm-convert-dicom-xio-g
Ignore test: plm-warp-dicom-xio-a
Ignore test: plm-warp-dicom-xio-a-stats-1
Ignore test: plm-warp-dicom-xio-a-check-1
Ignore test: plm-warp-dicom-xio-a-stats-2
Ignore test: plm-warp-dicom-xio-a-check-2
Ignore test: plm-convert-dicom-irregular-a
Ignore test: plm-convert-dicom-33-a
Ignore test: plm-convert-dicom-33-a-stats-1
Ignore test: plm-convert-dicom-33-a-stats-2
Ignore test: plm-convert-dicom-33-a-check-1
Ignore test: plm-convert-dicom-33-a-check-2
Ignore test: plm-convert-xio-a
Ignore test: plm-convert-xio-a-stats
Ignore test: plm-convert-xio-a-check
Ignore test: plm-convert-xio-b
Ignore test: plm-convert-xio-b-stats
Ignore test: plm-convert-xio-b-check
Ignore test: plm-warp-xio-a
Ignore test: plm-warp-xio-a-stats-1
Ignore test: plm-warp-xio-a-check-1
Ignore test: plm-warp-xio-a-stats-2
Ignore test: plm-warp-xio-a-check-2
Ignore test: plm-warp-xio-a-stats-3
Ignore test: plm-warp-xio-a-check-3
Ignore test: plm-warp-xio-a-stats-4
Ignore test: plm-warp-xio-a-check-4
Ignore test: plm-warp-xio-a-check-5
Ignore test: plm-warp-xio-a-check-6
Ignore test: plm-reg-itk-rigid-b
Ignore test: plm-reg-itk-rigid-b-stats-1
Ignore test: plm-reg-itk-rigid-b-check-1
Ignore test: plm-bsp-cuda
Ignore test: plm-bsp-cuda-stats
Ignore test: plm-bsp-cuda-check
Ignore test: bragg-curve
Ignore test: bragg-curve-check
Ignore test: proton-dose-7a
Ignore test: proton-dose-8d-check
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 10
        Start  10: gauss-1

10: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
10: Test timeout computed to be: 1500
test 11
        Start  11: gauss-2

11: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
11: Test timeout computed to be: 1500
test 12
        Start  12: gauss-3

12: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-3" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;-1000;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
12: Test timeout computed to be: 1500
test 14
        Start  14: gauss-5

14: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-5" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;20 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
14: Test timeout computed to be: 1500
10: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
10: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10
10: EXPECTED_ERRNO is 
11: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
11: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10
11: EXPECTED_ERRNO is 
12: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
12: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;-1000;--gauss-center;10 0 0;--gauss-std;10 10 10
12: EXPECTED_ERRNO is 
14: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
14: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;20 0 0;--gauss-std;10 10 10
14: EXPECTED_ERRNO is 
10: RETVAL: 0
10: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
10: 
10: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
10: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
10: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
10: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
10: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
10: 
11: RETVAL: 0
11: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
11: 
11: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
11: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
11: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
11: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
11: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
11: 
14: RETVAL: 0
14: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha
14: 
14: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
14: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
14: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
14: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
14: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
14: 
12: RETVAL: 0
12: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha
12: 
12: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
12: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
12: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
12: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
12: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
12: 
10: Not an error
11: Not an error
  1/571 Test  #10: gauss-1 ...............................   Passed    0.41 sec
test 28
        Start  28: rect-1

28: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--filenames-without-uids;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output-type;float;--output-dose-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--output-ss-list;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
28: Test timeout computed to be: 1500
  2/571 Test  #11: gauss-2 ...............................   Passed    0.42 sec
test 1
        Start   1: black-1

1: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=black-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha;--output-type;float;--pattern;rect;--origin;-25 -25 -25;--dim;40 40 40;--volume-size;50 50 50;--background;-1000;--foreground;-1000" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
1: Test timeout computed to be: 1500
12: Not an error
  3/571 Test  #12: gauss-3 ...............................   Passed    0.42 sec
test 2
        Start   2: cyl-1

2: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--output-type;uchar;--pattern;cylinder;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--radius;10" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
2: Test timeout computed to be: 1500
14: Not an error
  4/571 Test  #14: gauss-5 ...............................   Passed    0.43 sec
test 3
        Start   3: cyl-mask-2

3: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-mask-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -30 45" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
3: Test timeout computed to be: 1500
28: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
28: PARMS is synth;--filenames-without-uids;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output-type;float;--output-dose-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--output-ss-list;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000
28: EXPECTED_ERRNO is 
1: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
1: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha;--output-type;float;--pattern;rect;--origin;-25 -25 -25;--dim;40 40 40;--volume-size;50 50 50;--background;-1000;--foreground;-1000
1: EXPECTED_ERRNO is 
2: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
2: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--output-type;uchar;--pattern;cylinder;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--radius;10
2: EXPECTED_ERRNO is 
3: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
3: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -30 45
3: EXPECTED_ERRNO is 
1: RETVAL: 0
1: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha
1: 
1: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
1: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
1: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
1: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
1: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
1: 
2: RETVAL: 0
2: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd
2: 
2: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
2: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
2: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
2: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
2: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
2: 
3: RETVAL: 0
3: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd
3: 
3: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
3: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
3: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
3: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
3: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
3: 
1: Not an error
  5/571 Test   #1: black-1 ...............................   Passed    0.33 sec
test 5
        Start   5: cyl-mask-3

5: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-mask-3" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -45 40" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
5: Test timeout computed to be: 1500
2: Not an error
  6/571 Test   #2: cyl-1 .................................   Passed    0.35 sec
test 7
        Start   7: donut-1

7: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=donut-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--output-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--output-ss-list;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--output-type;float;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;-1000;--foreground;0;--filenames-without-uids;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-prefix;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-prefix/" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
7: Test timeout computed to be: 1500
5: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
5: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -45 40
5: EXPECTED_ERRNO is 
3: Not an error
  7/571 Test   #3: cyl-mask-2 ............................   Passed    0.34 sec
test 8
        Start   8: donut-2

8: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=donut-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--output-type;uchar;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;0;--foreground;1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
8: Test timeout computed to be: 1500
7: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
7: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--output-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--output-ss-list;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--output-type;float;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;-1000;--foreground;0;--filenames-without-uids;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-prefix;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-prefix/
7: EXPECTED_ERRNO is 
8: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
8: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--output-type;uchar;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;0;--foreground;1
8: EXPECTED_ERRNO is 
28: RETVAL: 0
28: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha
28: Converting from ITK_UCHAR to ITK_UCHAR_VEC
28: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha
28: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha
28: save_ss_img: save_ss_list
28: Done.
28: Doing extraction
28: Keyholizing structure 0.
28: Write: DoseGridScaling = 0.000000
28: 
28: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
28: 
28: Not an error
  8/571 Test  #28: rect-1 ................................   Passed    0.53 sec
test 9
        Start   9: gabor-01

9: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gabor-01" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--pattern;gabor;--origin;-5 -5 -5;--dim;11 11 11;--spacing;1 1 1;--gabor-k-fib;0 1;--gauss-center;0 0 0;--gauss-std;3 3 3;--background;0;--foreground;1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
9: Test timeout computed to be: 1500
9: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
9: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--pattern;gabor;--origin;-5 -5 -5;--dim;11 11 11;--spacing;1 1 1;--gabor-k-fib;0 1;--gauss-center;0 0 0;--gauss-std;3 3 3;--background;0;--foreground;1
9: EXPECTED_ERRNO is 
5: RETVAL: 0
5: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd
5: 
5: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
5: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
5: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
5: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
5: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
5: 
8: RETVAL: 0
8: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha
8: 
8: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
8: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
8: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
8: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
8: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
8: 
5: Not an error
  9/571 Test   #5: cyl-mask-3 ............................   Passed    0.30 sec
test 13
        Start  13: gauss-4

13: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-4" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output-type;float;--pattern;gauss;--origin;+25 +25 -25;--dim;38 38 38;--spacing;-1.31579 -1.31579 2;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
13: Test timeout computed to be: 1500
8: Not an error
13: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
13: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output-type;float;--pattern;gauss;--origin;+25 +25 -25;--dim;38 38 38;--spacing;-1.31579 -1.31579 2;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10
13: EXPECTED_ERRNO is 
 10/571 Test   #8: donut-2 ...............................   Passed    0.30 sec
test 15
        Start  15: gauss-6

15: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-6" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha;--output-type;float;--pattern;gauss;--origin;-15 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
15: Test timeout computed to be: 1500
15: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
15: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha;--output-type;float;--pattern;gauss;--origin;-15 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10
15: EXPECTED_ERRNO is 
7: RETVAL: 0
7: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha
7: Converting from ITK_UCHAR to ITK_UCHAR_VEC
7: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha
7: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-prefix//Foreground.mha
7: save_ss_img: save_ss_list
7: Done.
7: Doing extraction
7: Keyholizing structure 0.
7: Write: DoseGridScaling = 0.000000
7: 
7: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
7: 
9: RETVAL: 0
9: STDOUT: Gabor: 0 1 -> (0.000000 -1.570796) -> (-0.000000 -0.000000 -1.000000)
9: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha
9: 
9: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
9: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
9: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
9: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
9: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
9: 
7: Not an error
 11/571 Test   #7: donut-1 ...............................   Passed    0.44 sec
test 17
        Start  17: gauss-double-1

17: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-double-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
17: Test timeout computed to be: 1500
17: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
17: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10
17: EXPECTED_ERRNO is 
9: Not an error
 12/571 Test   #9: gabor-01 ..............................   Passed    0.34 sec
test 18
        Start  18: gauss-double-2

18: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-double-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
18: Test timeout computed to be: 1500
13: RETVAL: 0
13: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha
13: 
13: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
13: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
13: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
13: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
13: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
13: 
18: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
18: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10
18: EXPECTED_ERRNO is 
15: RETVAL: 0
15: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha
15: 
15: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
15: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
15: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
15: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
15: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
15: 
13: Not an error
 13/571 Test  #13: gauss-4 ...............................   Passed    0.33 sec
test 19
        Start  19: gauss-ushort-1

19: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-ushort-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
19: Test timeout computed to be: 1500
19: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
19: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10
19: EXPECTED_ERRNO is 
15: Not an error
 14/571 Test  #15: gauss-6 ...............................   Passed    0.35 sec
test 20
        Start  20: gauss-ushort-2

20: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-ushort-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
20: Test timeout computed to be: 1500
20: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
20: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10
20: EXPECTED_ERRNO is 
17: RETVAL: 0
17: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha
17: 
17: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
17: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
17: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
17: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
17: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
17: 
18: RETVAL: 0
18: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha
18: 
18: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
18: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
18: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
18: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
18: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
18: 
17: Not an error
 15/571 Test  #17: gauss-double-1 ........................   Passed    0.38 sec
test 21
        Start  21: lung-1

21: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=lung-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--filenames-without-uids;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;--output-prefix;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom;--pattern;lung;--lung-tumor-pos;0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
21: Test timeout computed to be: 1500
19: RETVAL: 0
19: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha
19: 
19: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
19: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
19: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
19: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
19: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
19: 
21: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
21: PARMS is synth;--filenames-without-uids;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;--output-prefix;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom;--pattern;lung;--lung-tumor-pos;0
21: EXPECTED_ERRNO is 
18: Not an error
 16/571 Test  #18: gauss-double-2 ........................   Passed    0.37 sec
test 26
        Start  26: ptv-1

26: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=ptv-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha;--pattern;rect;--dim;60 60 60;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;5 5 5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
26: Test timeout computed to be: 1500
20: RETVAL: 0
20: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha
20: 
20: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
20: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
20: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
20: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
20: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
20: 
26: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
26: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha;--pattern;rect;--dim;60 60 60;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;5 5 5
26: EXPECTED_ERRNO is 
19: Not an error
 17/571 Test  #19: gauss-ushort-1 ........................   Passed    0.33 sec
test 27
        Start  27: ptv-2

27: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=ptv-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha;--pattern;rect;--dim;40 40 40;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-100 -100 -100;--spacing;5 5 5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
27: Test timeout computed to be: 1500
27: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
27: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha;--pattern;rect;--dim;40 40 40;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-100 -100 -100;--spacing;5 5 5
27: EXPECTED_ERRNO is 
20: Not an error
 18/571 Test  #20: gauss-ushort-2 ........................   Passed    0.32 sec
test 29
        Start  29: rect-2

29: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha;--output-type;float;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-2;--filenames-without-uids" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
29: Test timeout computed to be: 1500
29: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
29: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha;--output-type;float;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-2;--filenames-without-uids
29: EXPECTED_ERRNO is 
26: RETVAL: 0
26: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha
26: 
26: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
26: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
26: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
26: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
26: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
26: 
27: RETVAL: 0
27: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha
27: 
27: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
27: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
27: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
27: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
27: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
27: 
26: Not an error
 19/571 Test  #26: ptv-1 .................................   Passed    0.32 sec
test 30
        Start  30: rect-2s

30: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-2s" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--spacing;13.158 13.158 13.158;--rect-size; 200 200 200;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
30: Test timeout computed to be: 1500
30: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
30: PARMS is synth;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--spacing;13.158 13.158 13.158;--rect-size; 200 200 200;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha
30: EXPECTED_ERRNO is 
29: RETVAL: 0
29: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha
29: Doing extraction
29: Keyholizing structure 0.
29: Write: DoseGridScaling = 0.000000
29: 
29: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
29: 
27: Not an error
 20/571 Test  #27: ptv-2 .................................   Passed    0.34 sec
test 31
        Start  31: rect-3

31: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-3" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;float;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-3;--filenames-without-uids" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
31: Test timeout computed to be: 1500
31: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
31: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;float;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-3;--filenames-without-uids
31: EXPECTED_ERRNO is 
29: Not an error
 21/571 Test  #29: rect-2 ................................   Passed    0.40 sec
test 32
        Start  32: rect-4

32: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-4" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
32: Test timeout computed to be: 1500
32: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
32: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50
32: EXPECTED_ERRNO is 
30: RETVAL: 0
30: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha
30: 
30: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
30: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
30: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
30: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
30: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
30: 
30: Not an error
 22/571 Test  #30: rect-2s ...............................   Passed    0.30 sec
test 33
        Start  33: rect-5

33: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-5" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;-300 -150 -250;--direction-cosines;rotated-1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
33: Test timeout computed to be: 1500
33: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
33: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;-300 -150 -250;--direction-cosines;rotated-1
33: EXPECTED_ERRNO is 
32: RETVAL: 0
32: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha
32: 
32: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
32: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
32: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
32: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
32: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
32: 
32: Not an error
 23/571 Test  #32: rect-4 ................................   Passed    0.29 sec
test 39
        Start  39: rect-10-roi-1

39: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10-roi-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-60 60 -60 60 -60 60" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
39: Test timeout computed to be: 1500
31: RETVAL: 0
31: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha
31: Doing extraction
31: Keyholizing structure 0.
31: Write: DoseGridScaling = 0.000000
31: 
31: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
31: 
39: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
39: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-60 60 -60 60 -60 60
39: EXPECTED_ERRNO is 
33: RETVAL: 0
33: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha
33: 
33: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
33: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
33: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
33: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
33: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
33: 
31: Not an error
 24/571 Test  #31: rect-3 ................................   Passed    0.51 sec
test 42
        Start  42: rect-11-roi

42: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-11-roi" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 80 -50 80 -50 80" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
42: Test timeout computed to be: 1500
42: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
42: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 80 -50 80 -50 80
42: EXPECTED_ERRNO is 
33: Not an error
 25/571 Test  #33: rect-5 ................................   Passed    0.31 sec
test 43
        Start  43: rect-12

43: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-12" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
43: Test timeout computed to be: 1500
43: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
43: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5
43: EXPECTED_ERRNO is 
21: RETVAL: 0
21: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha
21: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Body.mha
21: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Tumor.mha
21: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Lung.mha
21: Doing extraction
21: Keyholizing structure 0.
21: Keyholizing structure 1.
21: Keyholizing structure 2.
21: Write: DoseGridScaling = 0.000000
21: 
21: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
21: 
39: RETVAL: 0
39: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha
39: 
39: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
39: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
39: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
39: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
39: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
39: 
21: Not an error
 26/571 Test  #21: lung-1 ................................   Passed    1.15 sec
test 44
        Start  44: rect-13

44: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-13" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;11;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
44: Test timeout computed to be: 1500
39: Not an error
 27/571 Test  #39: rect-10-roi-1 .........................   Passed    0.32 sec
test 45
        Start  45: rect-14

45: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-14" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-2.5 6.5 -4.5 4.5 -4.5 4.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
45: Test timeout computed to be: 1500
44: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
44: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;11;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5
44: EXPECTED_ERRNO is 
42: RETVAL: 0
42: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha
42: 
42: STDERR: 
45: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
45: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-2.5 6.5 -4.5 4.5 -4.5 4.5
45: EXPECTED_ERRNO is 
43: RETVAL: 0
43: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha
43: 
43: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
43: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
43: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
43: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
43: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
43: 
42: Not an error
 28/571 Test  #42: rect-11-roi ...........................   Passed    0.33 sec
test 46
        Start  46: rect-15

46: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-15" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
46: Test timeout computed to be: 1500
46: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
46: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1
46: EXPECTED_ERRNO is 
43: Not an error
 29/571 Test  #43: rect-12 ...............................   Passed    0.31 sec
test 47
        Start  47: rect-16

47: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-16" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
47: Test timeout computed to be: 1500
47: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
47: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1
47: EXPECTED_ERRNO is 
44: RETVAL: 0
44: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha
44: 
44: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
44: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
44: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
44: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
44: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
44: 
45: RETVAL: 0
45: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha
45: 
45: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
45: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
45: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
45: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
45: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
45: 
44: Not an error
 30/571 Test  #44: rect-13 ...............................   Passed    0.30 sec
test 48
        Start  48: rect-17

48: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-17" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha;--pattern;rect;--dim;60 60 60;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;5 5 5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
48: Test timeout computed to be: 1500
45: Not an error
48: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
48: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha;--pattern;rect;--dim;60 60 60;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;5 5 5
48: EXPECTED_ERRNO is 
 31/571 Test  #45: rect-14 ...............................   Passed    0.32 sec
test 56
        Start  56: rectarr-03-a

56: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-03-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;0;--foreground;70;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
56: Test timeout computed to be: 1500
46: RETVAL: 0
46: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha
46: 
46: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
46: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
46: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
46: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
46: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
46: 
56: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
56: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;0;--foreground;70;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1
56: EXPECTED_ERRNO is 
47: RETVAL: 0
47: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha
47: 
47: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
47: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
47: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
47: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
47: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
47: 
46: Not an error
 32/571 Test  #46: rect-15 ...............................   Passed    0.29 sec
test 61
        Start  61: sphere-1

61: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-type;uchar;--pattern;sphere;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;255;--center;0 0 0;--radius;10 10 10" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
61: Test timeout computed to be: 1500
47: Not an error
61: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
61: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-type;uchar;--pattern;sphere;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;255;--center;0 0 0;--radius;10 10 10
61: EXPECTED_ERRNO is 
 33/571 Test  #47: rect-16 ...............................   Passed    0.30 sec
test 62
        Start  62: sphere-2

62: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;50 50 50" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
62: Test timeout computed to be: 1500
62: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
62: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;50 50 50
62: EXPECTED_ERRNO is 
48: RETVAL: 0
48: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha
48: 
48: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
48: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
48: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
48: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
48: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
48: 
56: RETVAL: 0
56: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha
56: 
56: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
56: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
56: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
56: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
56: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
56: 
48: Not an error
 34/571 Test  #48: rect-17 ...............................   Passed    0.29 sec
test 63
        Start  63: sphere-3

63: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-3" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
63: Test timeout computed to be: 1500
63: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
63: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50
63: EXPECTED_ERRNO is 
56: Not an error
 35/571 Test  #56: rectarr-03-a ..........................   Passed    0.33 sec
test 65
        Start  65: sphere-5

65: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-5" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha;--output-type;uchar;--pattern;sphere;--origin;-19 -19 -19;--dim;20 20 20;--spacing;2 2 2;--background;0;--foreground;1;--center;0 0 0;--radius;21" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
65: Test timeout computed to be: 1500
61: RETVAL: 0
61: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha
61: 
61: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
61: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
61: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
61: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
61: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
61: 
65: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
65: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha;--output-type;uchar;--pattern;sphere;--origin;-19 -19 -19;--dim;20 20 20;--spacing;2 2 2;--background;0;--foreground;1;--center;0 0 0;--radius;21
65: EXPECTED_ERRNO is 
62: RETVAL: 0
62: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha
62: 
62: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
62: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
62: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
62: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
62: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
62: 
61: Not an error
 36/571 Test  #61: sphere-1 ..............................   Passed    0.30 sec
test 71
        Start  71: vf-zero

71: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-zero" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--xf-zero;--dim;38 38 38" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
71: Test timeout computed to be: 1500
71: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
71: PARMS is synth-vf;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--xf-zero;--dim;38 38 38
71: EXPECTED_ERRNO is 
62: Not an error
 37/571 Test  #62: sphere-2 ..............................   Passed    0.30 sec
test 72
        Start  72: vf-trans-1

72: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--xf-trans;10 0 0;--dim;38 38 38" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
72: Test timeout computed to be: 1500
65: RETVAL: 0
65: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha
65: 
65: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
65: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
65: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
65: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
65: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
65: 
72: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
72: PARMS is synth-vf;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--xf-trans;10 0 0;--dim;38 38 38
72: EXPECTED_ERRNO is 
63: RETVAL: 0
63: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha
63: 
63: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
63: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
63: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
63: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
63: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
63: 
65: Not an error
 38/571 Test  #65: sphere-5 ..............................   Passed    0.26 sec
test 73
        Start  73: vf-trans-2

73: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;--xf-trans;0 10 0;--dim;38 38 38" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
73: Test timeout computed to be: 1500
73: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
73: PARMS is synth-vf;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;--xf-trans;0 10 0;--dim;38 38 38
73: EXPECTED_ERRNO is 
71: RETVAL: 0
71: STDOUT: Setting header
71: Origin = -243.4211 -243.4211 -243.4211
71: Size = 38 38 38
71: Spacing = 13.1579 13.1579 13.1579
71: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
71: Header was set
71: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha
71: 
71: STDERR: 
63: Not an error
 39/571 Test  #63: sphere-3 ..............................   Passed    0.35 sec
test 98
        Start  98: drr-a

98: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
98: Test timeout computed to be: 1500
72: RETVAL: 0
72: STDOUT: Setting header
72: Origin = -243.4211 -243.4211 -243.4211
72: Size = 38 38 38
72: Spacing = 13.1579 13.1579 13.1579
72: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
72: Header was set
72: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha
72: 
72: STDERR: 
98: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
98: PARMS is drr;-a;20;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
98: EXPECTED_ERRNO is 
71: Not an error
 40/571 Test  #71: vf-zero ...............................   Passed    0.31 sec
test 186
        Start 186: plm-convert-dicom-a

186: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha;--output-ss-list;plm-convert-dicom-a-ss.txt;--output-cxt;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-prefix;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
186: Test timeout computed to be: 1500
73: RETVAL: 0
73: STDOUT: Setting header
73: Origin = -243.4211 -243.4211 -243.4211
73: Size = 38 38 38
73: Spacing = 13.1579 13.1579 13.1579
73: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
73: Header was set
73: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha
73: 
73: STDERR: 
186: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
186: PARMS is convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha;--output-ss-list;plm-convert-dicom-a-ss.txt;--output-cxt;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-prefix;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix
186: EXPECTED_ERRNO is 
72: Not an error
 41/571 Test  #72: vf-trans-1 ............................   Passed    0.35 sec
test 281
        Start 281: plm-reg-itk-translation

281: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-translation" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
281: Test timeout computed to be: 1500
281: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
281: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation.txt
281: EXPECTED_ERRNO is 
73: Not an error
 42/571 Test  #73: vf-trans-2 ............................   Passed    0.23 sec
test 313
        Start 313: plm-bsp-mse-h

313: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-h" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
313: Test timeout computed to be: 1500
313: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
313: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h.txt
313: EXPECTED_ERRNO is 
186: RETVAL: 0
186: STDOUT: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3357517.1640785960.95922RTSTRUCT
186: Found DCM_ReferencedFrameOfReferenceSequence!
186: Found DCM_RTReferencedStudySequence!
186: Trying to load rt structure set.
186: Adding structure (1), Foreground
186: Structure 1 has color 255\0\0
186: Setting PIH from rasterization heuristicsPIH is:
186: Origin = -55.2632 -55.2632 -46.0526
186: Size = 512 512 7
186: Spacing = 0.2159 0.2159 13.1579
186: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
186: Rt_study_warp: Convert ss_img to cxt.
186: Rt_study_warp: Apply dicom_dir.
186: Rt_study_warp: Set geometry from PIH.
186: Rt_study_warp: Set rasterization geometry.
186: rast_dim = 512 512 7
186: rast_offset = -55.2632 -55.2632 -46.0526
186: rast_spacing = 0.215872 0.215872 13.1579
186: Rt_study_warp: warp and save ss.
186: Warp_and_save_ss: seg->rasterize
186: Rasterizing...
186: Converting...
186: Finished rasterization.
186: Warp_and_save_ss: save_ss_img
186: save_ss_img: save_ss_image
186: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha
186: save_ss_img: save_ss_list
186: Done.
186: save_ss_img: save_prefix
186: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix/Foreground.mha
186: save_ss_img: save_cxt
186: Finished!
186: 
186: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
186: 
98: RETVAL: 0
98: STDOUT: Rendering DRR 0
98: I/O time: 0.002929 sec
98: Rendering DRR 1
98: I/O time: 0.000570 sec
98: Rendering DRR 2
98: I/O time: 0.000582 sec
98: Rendering DRR 3
98: I/O time: 0.000751 sec
98: Rendering DRR 4
98: I/O time: 0.000707 sec
98: Rendering DRR 5
98: I/O time: 0.000624 sec
98: Rendering DRR 6
98: I/O time: 0.000598 sec
98: Rendering DRR 7
98: I/O time: 0.000619 sec
98: Rendering DRR 8
98: I/O time: 0.001785 sec
98: Rendering DRR 9
98: I/O time: 0.000569 sec
98: Rendering DRR 10
98: I/O time: 0.000499 sec
98: Rendering DRR 11
98: I/O time: 0.000492 sec
98: Rendering DRR 12
98: I/O time: 0.000785 sec
98: Rendering DRR 13
98: I/O time: 0.000667 sec
98: Rendering DRR 14
98: I/O time: 0.000626 sec
98: Rendering DRR 15
98: I/O time: 0.000770 sec
98: Rendering DRR 16
98: I/O time: 0.000638 sec
98: Rendering DRR 17
98: I/O time: 0.000665 sec
98: Rendering DRR 18
98: I/O time: 0.000723 sec
98: Rendering DRR 19
98: I/O time: 0.000576 sec
98: Total time: 0.277037 secs
98: 
98: STDERR: 
281: RETVAL: 0
281: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
281: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
281: Launching registration worker thread
281: Inside registration worker thread
281: Doing registration stage
281: [1] xf_in->m_type = 0, xf_out->m_type = 0
281: Fixed image for this stage:
281: Dim = 19 19 19
281: Origin = -24.3421 -24.3421 -24.3421
281: Spacing = 2.63158 2.63158 2.63158
281: Direction Cosines =
281:  1 0 0
281:  0 1 0
281:  0 0 1
281: Moving image for this stage:
281: Dim = 19 19 19
281: Origin = -24.3421 -24.3421 -24.3421
281: Spacing = 2.63158 2.63158 2.63158
281: Direction Cosines =
281:  1 0 0
281:  0 1 0
281:  0 0 1
281: Initial Parameters = [0, 0, 0]
281: Starting ITK registration
281: StartEvent: [0, 0, 0]
281: MSE [ 0,  0,10.00] 18756.235 [0, 0, 0] *
281: MSE [ 1,  1, 5.00]     1.116 [9.999997615028182, -0.004883617032987267, -0.004883617032989416]  -18755.12 *
281: MSE [ 2,  2, 2.50]  5544.602 [5.318441699151569, 1.2366948554205732, 1.2366948554207535]    5543.49
281: MSE [ 3,  3, 2.50]  1453.699 [7.610651940085846, 0.5310844064631219, 0.531084406463199]   -4090.90
281: MSE [ 4,  4, 1.25]     4.252 [9.961460585442481, -0.07045474975050126, -0.07045474975051347]   -1449.45
281: EndEvent: [9.961460585442481, -0.07045474975050126, -0.07045474975051347]
281: RegularStepGradientDescentOptimizer: Maximum number of iterations (5) exceeded.
281: ITK registration complete
281: [2] xf_out->m_type = 1, xf_in->m_type = 0
281: ** Registration worker thread finished.
281: Writing transformation ...
281: Warping...
281: plm_warp_itk: xform_to_itk_vf
281: plm_warp_itk: convert_to_itk
281: plm_warp_itk: warping...
281: Saving image...
281: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha
281: Saving vf...
281: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha
281: Load:   0.0540068
281: Run:    0.219541
281: Save:   0.0324259
281: Total:  0.305974
281: Finished!
281: 
281: STDERR: 
98: Not an error
186: Not an error
 43/571 Test  #98: drr-a .................................   Passed    0.65 sec
test 336
        Start 336: plm-bsp-mi-c-2

336: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
336: Test timeout computed to be: 1500
 44/571 Test #186: plm-convert-dicom-a ...................   Passed    0.56 sec
test 439
        Start 439: plm-reg-compose

439: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-compose" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-reg-compose.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
439: Test timeout computed to be: 1500
336: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
336: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2.txt
336: EXPECTED_ERRNO is 
439: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
439: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-reg-compose.txt
439: EXPECTED_ERRNO is 
313: RETVAL: 0
313: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
313: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
313: Launching registration worker thread
313: Inside registration worker thread
313: Doing registration stage
313: [1] xf_in->m_type = 0, xf_out->m_type = 0
313: RESAMPLE 1 1: (2 2 2), (2 2 2)
313: RESAMPLE 1 1: (2 2 2), (2 2 2)
313: volume_calc_grad complete.
313: bspline_xform_initialize
313: rdims = (2,2,2)
313: vox_per_rgn = (11,11,11)
313: cdims = (5 5 5)
313: Algorithm flavor = h
313: Threading = 0
313: >> Checking JH allocation
313: BSPLINE PARMS
313: max_its = 5
313: max_feval = 5
313: BSPLINE XFORM HEADER
313: vox_per_rgn = 11 11 11
313: roi_offset = 0 0 0
313: roi_dim = 19 19 19
313: img_dc = 1 0 0 0 1 0 0 0 1
313: BST METRICS
313: MET 110100 MSE 1.000000
313: Setting nmax, mmax = 375 21
313: >>> START     
313: This problem is unconstrained.
313: [ 0,  0] MSE    18756.236 NV   6859 GM -2980.067 GN       852 [     0.004 s ]
313:          CMIN   0.00 CAVG   0.00 CMAX   0.00
313:          LSD   0.00
313: [ 0,  1] MSE    17838.633 NV   6859 GM -2882.393 GN       824 [     0.004 s ]
313:          CMIN  -0.07 CAVG   0.01 CMAX   0.68
313:          LSD   1.00
313: [ 0,  2] MSE    14464.859 NV   6858 GM -2822.149 GN       824 [     0.004 s ]
313:          CMIN  -0.35 CAVG   0.05 CMAX   3.40
313:          LSD   5.00
313: [ 0,  3] MSE     3829.066 NV   6286 GM -1585.570 GN       459 [     0.006 s ]
313:          CMIN  -1.48 CAVG   0.20 CMAX  14.26
313:          LSD  21.00
313: [ 1,  4] MSE     3098.538 NV   5455 GM  1176.092 GN       399 [     0.003 s ]
313:          CMIN  -1.74 CAVG   0.44 CMAX  32.50
313:          LSD  27.95
313: [ 2,  5] MSE      282.038 NV   5851 GM    54.495 GN      43.4 [     0.003 s ]
313:          CMIN  -1.73 CAVG   0.34 CMAX  23.99
313:          LSD  13.11
313: [2] xf_out->m_type = 9, xf_in->m_type = 0
313: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
313: bspline_xform_initialize
313: rdims = (2,2,2)
313: vox_per_rgn = (22,22,22)
313: cdims = (5 5 5)
313: ** Registration worker thread finished.
313: Writing transformation ...
313: Warping...
313: Running: plm_warp_native
313: Converting input image...
313: Converting xform...
313: bspline_xform_initialize
313: rdims = (2,2,2)
313: vox_per_rgn = (22,22,22)
313: cdims = (5 5 5)
313: Creating output vf...
313: Creating output volume...
313: Running native warper...
313: bspline_warp complete.
313: Back convert to original type...
313: > Convert vf to itk
313: > Conversion complete.
313: plm_warp_native is complete.
313: Saving image...
313: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha
313: Saving vf...
313: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-vf.mha
313: Load:   0.058702
313: Run:    0.0327148
313: Save:   0.033989
313: Total:  0.125406
313: Finished!
313: 
313: STDERR: 
281: Not an error
 45/571 Test #281: plm-reg-itk-translation ...............   Passed    0.58 sec
test 526
        Start 526: plm-xf-convert-d

526: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-xf-convert.txt;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-type;itk_bspline" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
526: Test timeout computed to be: 1500
526: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
526: PARMS is xf-convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-xf-convert.txt;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-type;itk_bspline
526: EXPECTED_ERRNO is 
313: Not an error
 46/571 Test #313: plm-bsp-mse-h .........................   Passed    0.60 sec
test 4
        Start   4: cyl-2

4: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=mask;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
4: Test timeout computed to be: 1500
4: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
4: PARMS is mask;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd
4: EXPECTED_ERRNO is 
526: RETVAL: 0
526: STDOUT: bspline_xform_initialize
526: rdims = (2,2,2)
526: vox_per_rgn = (11,11,11)
526: cdims = (5 5 5)
526: about to xform_convert
526: did xform_convert
526: 
526: STDERR: 
439: RETVAL: 0
439: STDOUT: Loading fixed image [0]: gauss-2.mha
439: Loading moving image [0]: gauss-5.mha
439: Launching registration worker thread
439: Inside registration worker thread
439: Doing registration stage
439: [1] xf_in->m_type = 0, xf_out->m_type = 0
439: RESAMPLE 1 1: (2 2 2), (2 2 2)
439: RESAMPLE 1 1: (2 2 2), (2 2 2)
439: volume_calc_grad complete.
439: bspline_xform_initialize
439: rdims = (2,2,2)
439: vox_per_rgn = (11,11,11)
439: cdims = (5 5 5)
439: Algorithm flavor = g
439: Threading = 0
439: >> Checking JH allocation
439: BSPLINE PARMS
439: max_its = 10
439: max_feval = 10
439: BSPLINE XFORM HEADER
439: vox_per_rgn = 11 11 11
439: roi_offset = 0 0 0
439: roi_dim = 19 19 19
439: img_dc = 1 0 0 0 1 0 0 0 1
439: BST METRICS
439: MET 110100 MSE 1.000000
439: Setting nmax, mmax = 375 21
439: >>> START     
439: This problem is unconstrained.
439: [ 0,  0] MSE    13049.518 NV   6859 GM -1702.194 GN       529 [     0.015 s ]
439:          CMIN   0.00 CAVG   0.00 CMAX   0.00
439:          LSD   0.00
439: [ 0,  1] MSE    12469.547 NV   6859 GM -1637.952 GN       509 [     0.010 s ]
439:          CMIN  -0.05 CAVG   0.01 CMAX   0.74
439:          LSD   1.00
439: [ 0,  2] MSE    10357.764 NV   6859 GM -1646.825 GN       515 [     0.012 s ]
439:          CMIN  -0.26 CAVG   0.04 CMAX   3.71
439:          LSD   5.00
439: [ 0,  3] MSE     1944.747 NV   6295 GM  -809.887 GN       247 [     0.011 s ]
439:          CMIN  -1.11 CAVG   0.18 CMAX  15.56
439:          LSD  21.00
439: [ 1,  4] MSE      891.268 NV   5678 GM   504.524 GN       187 [     0.017 s ]
439:          CMIN  -1.50 CAVG   0.35 CMAX  29.17
439:          LSD  19.59
439: [ 2,  5] MSE      117.931 NV   5939 GM   -11.010 GN      12.8 [     0.011 s ]
439:          CMIN  -1.27 CAVG   0.29 CMAX  23.54
439:          LSD   8.47
439: [ 3,  6] MSE      110.217 NV   5931 GM   -24.361 GN      9.26 [     0.010 s ]
439:          CMIN  -1.44 CAVG   0.29 CMAX  23.60
439:          LSD   0.55
439: [ 4,  7] MSE      101.235 NV   5928 GM   -14.715 GN      10.7 [     0.011 s ]
439:          CMIN  -1.88 CAVG   0.29 CMAX  23.41
439:          LSD   1.34
439: [ 5,  8] MSE       89.096 NV   5930 GM   -23.801 GN      14.1 [     0.010 s ]
439:          CMIN  -2.79 CAVG   0.31 CMAX  22.44
439:          LSD   2.74
439: [ 6,  9] MSE       76.413 NV   5947 GM    60.289 GN      16.9 [     0.008 s ]
439:          CMIN  -4.30 CAVG   0.34 CMAX  20.28
439:          LSD   5.25
439: [ 7, 10] MSE       68.670 NV   5976 GM   -50.552 GN      14.5 [     0.004 s ]
439:          CMIN  -6.00 CAVG   0.36 CMAX  17.22
439:          LSD   5.96
439: [2] xf_out->m_type = 9, xf_in->m_type = 0
439: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
439: bspline_xform_initialize
439: rdims = (2,2,2)
439: vox_per_rgn = (22,22,22)
439: cdims = (5 5 5)
439: ** Registration worker thread finished.
439: Writing transformation ...
439: Warping...
439: Running: plm_warp_native
439: Converting input image...
439: Converting xform...
439: bspline_xform_initialize
439: rdims = (2,2,2)
439: vox_per_rgn = (22,22,22)
439: cdims = (5 5 5)
439: Creating output vf...
439: Creating output volume...
439: Running native warper...
439: bspline_warp complete.
439: Back convert to original type...
439: > Convert vf to itk
439: > Conversion complete.
439: plm_warp_native is complete.
439: Saving image...
439: Trying to write image to plm-reg-compose-img.mha
439: Saving vf...
439: Trying to write image to plm-reg-compose-vf.mha
439: Load:   0.048902
439: Run:    0.134957
439: Save:   0.020185
439: Total:  0.204044
439: Finished!
439: 
439: STDERR: 
526: Not an error
 47/571 Test #526: plm-xf-convert-d ......................   Passed    0.35 sec
test 6
        Start   6: cyl-3

6: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-3" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=mask;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
6: Test timeout computed to be: 1500
4: RETVAL: 0
4: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd
4: Finished!
4: 
4: STDERR: 
6: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
6: PARMS is mask;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd
6: EXPECTED_ERRNO is 
439: Not an error
 48/571 Test #439: plm-reg-compose .......................   Passed    0.52 sec
test 22
        Start  22: lung-2

22: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=lung-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--filenames-without-uids;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2-dicom;--pattern;lung;--lung-tumor-pos;-5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
22: Test timeout computed to be: 1500
4: Not an error
 49/571 Test   #4: cyl-2 .................................   Passed    0.36 sec
test 36
        Start  36: rect-8

36: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-8" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-30 70 -50 50 -50 50" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
36: Test timeout computed to be: 1500
36: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
36: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-30 70 -50 50 -50 50
36: EXPECTED_ERRNO is 
22: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
22: PARMS is synth;--filenames-without-uids;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2-dicom;--pattern;lung;--lung-tumor-pos;-5
22: EXPECTED_ERRNO is 
6: RETVAL: 0
6: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd
6: Finished!
6: 
6: STDERR: 
36: RETVAL: 0
36: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha
36: 
36: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
36: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
36: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
36: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
36: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
36: 
6: Not an error
 50/571 Test   #6: cyl-3 .................................   Passed    0.28 sec
test 37
        Start  37: rect-9

37: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-9" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha;--output-type;uchar;--pattern;rect;--dim;47 47 47;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
37: Test timeout computed to be: 1500
36: Not an error
 51/571 Test  #36: rect-8 ................................   Passed    0.20 sec
test 51
        Start  51: rectarr-01-a

51: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-01-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;-1000;--foreground;0;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
51: Test timeout computed to be: 1500
37: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
37: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha;--output-type;uchar;--pattern;rect;--dim;47 47 47;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50
37: EXPECTED_ERRNO is 
51: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
51: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;-1000;--foreground;0;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1
51: EXPECTED_ERRNO is 
37: RETVAL: 0
37: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha
37: 
37: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
37: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
37: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
37: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
37: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
37: 
51: RETVAL: 0
51: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha
51: 
51: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
51: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
51: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
51: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
51: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
51: 
37: Not an error
 52/571 Test  #37: rect-9 ................................   Passed    0.29 sec
test 57
        Start  57: rectarr-03

57: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-03" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-5 5 5 15 -5 5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
57: Test timeout computed to be: 1500
336: RETVAL: 0
336: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
336: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha
336: Launching registration worker thread
336: Inside registration worker thread
336: Doing registration stage
336: [1] xf_in->m_type = 0, xf_out->m_type = 0
336: RESAMPLE 1 1: (1 1 1), (1 1 1)
336: RESAMPLE 1 1: (1 1 1), (1 1 1)
336: volume_calc_grad complete.
336: bspline_xform_initialize
336: rdims = (3,3,3)
336: vox_per_rgn = (15,15,15)
336: cdims = (6 6 6)
336: Algorithm flavor = c
336: Threading = 0
336: >> Checking JH allocation
336: >> Performing JH allocation
336: BSPLINE PARMS
336: max_its = 10
336: max_feval = 10
336: BSPLINE XFORM HEADER
336: vox_per_rgn = 15 15 15
336: roi_offset = 0 0 0
336: roi_dim = 38 38 38
336: img_dc = 1 0 0 0 1 0 0 0 1
336: BST METRICS
336: MET 110100 MI 1.000000
336: >> Performing JH initialization
336: Using alpha_0 (1.000000)
336: [ 0,  0] MI     -0.3659457 NV  54872 GM    -0.007 GN   0.00788 [     0.093 s ]
336:          CMIN   0.01 CAVG   0.01 CMAX   0.01
336: [ 0,  1] MI     -0.3699214 NV  54872 GM    -0.056 GN   0.00867 [     0.078 s ]
336:          CMIN  -0.21 CAVG   0.01 CMAX   0.30
336:                     GR   0.50 NEW_A   1.00 ACCEPT? 1
336: [ 1,  2] MI     -0.3777946 NV  54872 GM    -0.049 GN   0.00903 [     0.077 s ]
336:          CMIN  -0.23 CAVG   0.02 CMAX   0.69
336:                     GR   0.91 NEW_A   3.00 ACCEPT? 1
336: [ 2,  3] MI     -0.4137608 NV  54753 GM    -0.063 GN     0.017 [     0.077 s ]
336:          CMIN  -0.35 CAVG   0.05 CMAX   2.09
336:                     GR   3.98 NEW_A   9.00 ACCEPT? 1
336: [ 3,  4] MI     -0.5521525 NV  53587 GM    -0.081 GN     0.017 [     0.077 s ]
336:          CMIN  -0.97 CAVG   0.10 CMAX   7.08
336:                     GR   8.16 NEW_A  27.00 ACCEPT? 1
336: [ 4,  5] MI     -1.2166027 NV  49761 GM    -0.031 GN    0.0276 [     0.073 s ]
336:          CMIN  -2.22 CAVG   0.30 CMAX  20.76
336:                     GR  38.97 NEW_A  81.00 ACCEPT? 1
336: [ 5,  6] MI     -0.4035923 NV  36457 GM    -0.029 GN    0.0114 [     0.062 s ]
336:          CMIN -26.58 CAVG   0.44 CMAX  33.14
336:                     GR -29.50 NEW_A  40.50 ACCEPT? 0
336: [ 5,  7] MI     -0.7946788 NV  43303 GM    -0.068 GN    0.0215 [     0.054 s ]
336:          CMIN -14.21 CAVG   0.37 CMAX  26.12
336:                     GR -15.31 NEW_A  20.25 ACCEPT? 0
336: [ 5,  8] MI     -1.1523657 NV  46825 GM    -0.160 GN     0.031 [     0.053 s ]
336:          CMIN  -8.02 CAVG   0.33 CMAX  23.44
336:                     GR  -2.33 NEW_A  10.12 ACCEPT? 0
336: [ 5,  9] MI     -1.3108922 NV  48385 GM    -0.176 GN    0.0266 [     0.051 s ]
336:          CMIN  -4.93 CAVG   0.31 CMAX  22.10
336:                     GR   3.42 NEW_A  30.38 ACCEPT? 1
336: [ 6, 10] MI     -0.7927921 NV  46839 GM     0.149 GN    0.0234 [     0.050 s ]
336:          CMIN  -2.23 CAVG   0.62 CMAX  17.80
336:                     GR -19.50 NEW_A  15.19 ACCEPT? 0
336: [2] xf_out->m_type = 9, xf_in->m_type = 0
336: ** Registration worker thread finished.
336: Writing transformation ...
336: Warping...
336: Running: plm_warp_native
336: Converting input image...
336: Converting xform...
336: bspline_xform_initialize
336: rdims = (3,3,3)
336: vox_per_rgn = (15,15,15)
336: cdims = (6 6 6)
336: Creating output vf...
336: Creating output volume...
336: Running native warper...
336: bspline_warp complete.
336: Back convert to original type...
336: > Convert vf to itk
336: > Conversion complete.
336: plm_warp_native is complete.
336: Saving image...
336: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha
336: Saving vf...
336: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha
336: Load:   0.0273662
336: Run:    0.754231
336: Save:   0.02792
336: Total:  0.809517
336: Finished!
336: 
336: STDERR: 
51: Not an error
 53/571 Test  #51: rectarr-01-a ..........................   Passed    0.29 sec
test 58
        Start  58: rectarr-04

58: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-04" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-10 0 5 15 -5 5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
58: Test timeout computed to be: 1500
57: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
57: PARMS is synth;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-5 5 5 15 -5 5
57: EXPECTED_ERRNO is 
58: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
58: PARMS is synth;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-10 0 5 15 -5 5
58: EXPECTED_ERRNO is 
336: Not an error
 54/571 Test #336: plm-bsp-mi-c-2 ........................   Passed    1.09 sec
test 66
        Start  66: sphere-6

66: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-6" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
66: Test timeout computed to be: 1500
66: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
66: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50
66: EXPECTED_ERRNO is 
66: RETVAL: 0
66: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha
66: 
66: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
66: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
66: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
66: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
66: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
66: 
66: Not an error
 55/571 Test  #66: sphere-6 ..............................   Passed    0.18 sec
test 67
        Start  67: sphere-7

67: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-7" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
67: Test timeout computed to be: 1500
57: RETVAL: 0
57: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha
57: 
57: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
57: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
57: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
57: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
57: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
57: 
67: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
67: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50
67: EXPECTED_ERRNO is 
58: RETVAL: 0
58: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha
58: 
58: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
58: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
58: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
58: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
58: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
58: 
57: Not an error
 56/571 Test  #57: rectarr-03 ............................   Passed    0.35 sec
test 74
        Start  74: vf-radial-1

74: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-radial-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha;--xf-radial;--radial-center;0 0 0;--radial-mag;10;--dim;38 38 38" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
74: Test timeout computed to be: 1500
58: Not an error
 57/571 Test  #58: rectarr-04 ............................   Passed    0.37 sec
test 90
        Start  90: plm-diff-a

90: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=diff;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
90: Test timeout computed to be: 1500
74: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
74: PARMS is synth-vf;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha;--xf-radial;--radial-center;0 0 0;--radial-mag;10;--dim;38 38 38
74: EXPECTED_ERRNO is 
90: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
90: PARMS is diff;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha
90: EXPECTED_ERRNO is 
67: RETVAL: 0
67: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha
67: 
67: STDERR: 
22: RETVAL: 0
22: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha
22: Doing extraction
22: Keyholizing structure 0.
22: Keyholizing structure 1.
22: Keyholizing structure 2.
22: Write: DoseGridScaling = 0.000000
22: 
22: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
22: 
67: Not an error
 58/571 Test  #67: sphere-7 ..............................   Passed    0.22 sec
test 93
        Start  93: plm-diff-b

93: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=diff;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
93: Test timeout computed to be: 1500
93: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
93: PARMS is diff;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha
93: EXPECTED_ERRNO is 
74: RETVAL: 0
74: STDOUT: Setting header
74: Origin = -243.4211 -243.4211 -243.4211
74: Size = 38 38 38
74: Spacing = 13.1579 13.1579 13.1579
74: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
74: Header was set
74: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha
74: 
74: STDERR: 
22: Not an error
 59/571 Test  #22: lung-2 ................................   Passed    1.04 sec
test 101
        Start 101: drr-b

101: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b/out_;-i;uniform;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
101: Test timeout computed to be: 1500
101: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
101: PARMS is drr;-a;20;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b/out_;-i;uniform;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
101: EXPECTED_ERRNO is 
90: RETVAL: 0
90: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha
90: 
90: STDERR: 
74: Not an error
 60/571 Test  #74: vf-radial-1 ...........................   Passed    0.28 sec
test 104
        Start 104: drr-c

104: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c/out_;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
104: Test timeout computed to be: 1500
104: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
104: PARMS is drr;-a;20;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c/out_;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha
104: EXPECTED_ERRNO is 
90: Not an error
 61/571 Test  #90: plm-diff-a ............................   Passed    0.34 sec
test 107
        Start 107: fdk-cpu-a

107: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fdk;-I;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-f;none;-a;0 19;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
107: Test timeout computed to be: 1500
93: RETVAL: 0
93: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha
93: 
93: STDERR: 
107: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
107: PARMS is fdk;-I;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-f;none;-a;0 19;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha
107: EXPECTED_ERRNO is 
93: Not an error
 62/571 Test  #93: plm-diff-b ............................   Passed    0.32 sec
test 110
        Start 110: fdk-cpu-d

110: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fdk;-I;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-X;0;-f;none;-a;0 19;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
110: Test timeout computed to be: 1500
110: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
110: PARMS is fdk;-I;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-X;0;-f;none;-a;0 19;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha
110: EXPECTED_ERRNO is 
101: RETVAL: 0
101: STDOUT: Rendering DRR 0
101: I/O time: 0.000413 sec
101: Rendering DRR 1
101: I/O time: 0.000315 sec
101: Rendering DRR 2
101: I/O time: 0.000427 sec
101: Rendering DRR 3
101: I/O time: 0.000325 sec
101: Rendering DRR 4
101: I/O time: 0.000330 sec
101: Rendering DRR 5
101: I/O time: 0.000328 sec
101: Rendering DRR 6
101: I/O time: 0.000330 sec
101: Rendering DRR 7
101: I/O time: 0.000408 sec
101: Rendering DRR 8
101: I/O time: 0.000402 sec
101: Rendering DRR 9
101: I/O time: 0.000365 sec
101: Rendering DRR 10
101: I/O time: 0.000354 sec
101: Rendering DRR 11
101: I/O time: 0.000410 sec
101: Rendering DRR 12
101: I/O time: 0.000342 sec
101: Rendering DRR 13
101: I/O time: 0.000316 sec
101: Rendering DRR 14
101: I/O time: 0.000404 sec
101: Rendering DRR 15
101: I/O time: 0.000359 sec
101: Rendering DRR 16
101: I/O time: 0.000323 sec
101: Rendering DRR 17
101: I/O time: 0.000352 sec
101: Rendering DRR 18
101: I/O time: 0.000363 sec
101: Rendering DRR 19
101: I/O time: 0.000288 sec
101: Total time: 0.242394 secs
101: 
101: STDERR: 
101: Not an error
 63/571 Test #101: drr-b .................................   Passed    0.49 sec
test 113
        Start 113: landmark-warp-a

113: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;tps;-f;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha;-V;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
113: Test timeout computed to be: 1500
113: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
113: PARMS is lm-warp;-a;tps;-f;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha;-V;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha
113: EXPECTED_ERRNO is 
104: RETVAL: 0
104: STDOUT: Rendering DRR 0
104: I/O time: 0.000637 sec
104: Rendering DRR 1
104: I/O time: 0.000447 sec
104: Rendering DRR 2
104: I/O time: 0.000696 sec
104: Rendering DRR 3
104: I/O time: 0.000353 sec
104: Rendering DRR 4
104: I/O time: 0.000411 sec
104: Rendering DRR 5
104: I/O time: 0.000656 sec
104: Rendering DRR 6
104: I/O time: 0.000492 sec
104: Rendering DRR 7
104: I/O time: 0.000356 sec
104: Rendering DRR 8
104: I/O time: 0.000446 sec
104: Rendering DRR 9
104: I/O time: 0.000536 sec
104: Rendering DRR 10
104: I/O time: 0.000365 sec
104: Rendering DRR 11
104: I/O time: 0.000399 sec
104: Rendering DRR 12
104: I/O time: 0.000364 sec
104: Rendering DRR 13
104: I/O time: 0.000402 sec
104: Rendering DRR 14
104: I/O time: 0.000378 sec
104: Rendering DRR 15
104: I/O time: 0.000487 sec
104: Rendering DRR 16
104: I/O time: 0.000356 sec
104: Rendering DRR 17
104: I/O time: 0.000440 sec
104: Rendering DRR 18
104: I/O time: 0.000360 sec
104: Rendering DRR 19
104: I/O time: 0.000411 sec
104: Total time: 0.32137 secs
104: 
104: STDERR: 
104: Not an error
 64/571 Test #104: drr-c .................................   Passed    0.66 sec
test 118
        Start 118: landmark-warp-b

118: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;wendland;-f;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha;-V;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha;-r;90;-d;0;-Y;0.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
118: Test timeout computed to be: 1500
118: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
118: PARMS is lm-warp;-a;wendland;-f;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha;-V;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha;-r;90;-d;0;-Y;0.0
118: EXPECTED_ERRNO is 
113: RETVAL: 0
113: STDOUT: Hello world
113: Gonna convert pointsets
113: Pointset:
113:              rect-2-0 -26.271700 -52.162899  46.052799
113:              rect-2-1  65.870201 -52.543598  46.053001
113:              rect-2-2  65.870201  52.543900  46.053001
113:              rect-2-3 -25.510201  53.686199  46.053001
113:              rect-2-4 -25.891001 -52.162899 -46.052502
113:              rect-2-5  66.631699 -53.305099 -46.053001
113:              rect-2-6  65.870201  53.305401 -46.053001
113:              rect-2-7 -25.129499  53.686199 -46.053001
113: Conversion complete.
113: -26.2717 -52.1629 46.0528
113: 65.8702 -52.5436 46.053
113: 65.8702 52.5439 46.053
113: -25.5102 53.6862 46.053
113: -25.891 -52.1629 -46.0525
113: 66.6317 -53.3051 -46.053
113: 65.8702 53.3054 -46.053
113: -25.1295 53.6862 -46.053
113: Setting landmarks to TPS
113: Computing matrix
113: Setting xform
113: Converting to VF
113: Warping...
113: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha
113: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha
113: 
113: STDERR: 
113: Not an error
 65/571 Test #113: landmark-warp-a .......................   Passed    0.43 sec
test 123
        Start 123: landmark-warp-c

123: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;gauss;-f;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha;-V;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;-r;74;-d;0;-Y;1.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
123: Test timeout computed to be: 1500
123: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
123: PARMS is lm-warp;-a;gauss;-f;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha;-V;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;-r;74;-d;0;-Y;1.0
123: EXPECTED_ERRNO is 
118: RETVAL: 0
118: STDOUT: 180.000000
118: 180.000000
118: 180.000000
118: 180.000000
118: 180.000000
118: 180.000000
118: 180.000000
118: 180.000000
118: coeff    0  -18.4133 0.0962 0.0000
118: coeff    1  -7.5271 -0.0286 0.0000
118: coeff    2  -6.1678 1.3625 -0.0000
118: coeff    3  -20.1368 -0.9723 0.0000
118: coeff    4  -19.7774 -0.2570 -0.0000
118: coeff    5  -7.3050 1.5884 0.0000
118: coeff    6  -7.4759 -0.3261 -0.0000
118: coeff    7  -20.6523 -0.1769 -0.0000
118: Creating output vf
118: Rendering vector field
118: Wendland RBF, updating the vector field
118: Converting volume to float
118: Creating output vol
118: Warping image
118: Direction cosines: vin = 1.000000 0.000000 0.000000 ...
118: vf = 1.000000 0.000000 0.000000 ...
118: spac: vin = 13.157895 13.157895 13.157895 ...
118: vf = 13.157895 13.157895 13.157895 ...
118: proj: vin = 0.076000 -0.000000 0.000000 ...
118: vf = 0.076000 -0.000000 0.000000 ...
118: step: vin = 13.157895 0.000000 0.000000 ...
118: vf = 13.157895 0.000000 0.000000 ...
118: Freeing coeff
118: Done with rbf_wendland_warp
118: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha
118: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha
118: 
118: STDERR: 
118: Not an error
 66/571 Test #118: landmark-warp-b .......................   Passed    0.33 sec
test 129
        Start 129: plm-add-a

129: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=add;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
129: Test timeout computed to be: 1500
129: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
129: PARMS is add;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha
129: EXPECTED_ERRNO is 
123: RETVAL: 0
123: STDOUT: 74.000000
123: 74.000000
123: 74.000000
123: 74.000000
123: 74.000000
123: 74.000000
123: 74.000000
123: 74.000000
123: coeff    0  -14.4830 0.0226 -0.0000
123: coeff    1  -6.4591 0.0989 0.0000
123: coeff    2  -5.6641 0.8767 0.0000
123: coeff    3  -15.5832 -0.6135 0.0000
123: coeff    4  -15.3769 -0.1107 0.0000
123: coeff    5  -6.4169 1.0717 -0.0000
123: coeff    6  -6.5309 -0.1220 0.0000
123: coeff    7  -16.0092 -0.1893 -0.0000
123: Creating output vf
123: Rendering vector field
123: Gauss RBF, updating the vector field
123: Converting volume to float
123: Creating output vol
123: Warping image
123: Direction cosines: vin = 1.000000 0.000000 0.000000 ...
123: vf = 1.000000 0.000000 0.000000 ...
123: spac: vin = 13.157895 13.157895 13.157895 ...
123: vf = 13.157895 13.157895 13.157895 ...
123: proj: vin = 0.076000 -0.000000 0.000000 ...
123: vf = 0.076000 -0.000000 0.000000 ...
123: step: vin = 13.157895 0.000000 0.000000 ...
123: vf = 13.157895 0.000000 0.000000 ...
123: Freeing coeff
123: Done with rbf_gauss_warp
123: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha
123: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha
123: 
123: STDERR: 
123: Not an error
 67/571 Test #123: landmark-warp-c .......................   Passed    0.27 sec
test 132
        Start 132: plm-add-b

132: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=average;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
132: Test timeout computed to be: 1500
132: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
132: PARMS is average;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha
132: EXPECTED_ERRNO is 
132: RETVAL: 0
132: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd
132: 
132: STDERR: 
129: RETVAL: 0
129: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd
129: 
129: STDERR: 
132: Not an error
 68/571 Test #132: plm-add-b .............................   Passed    0.22 sec
test 135
        Start 135: plm-add-vf-a

135: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=add;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
135: Test timeout computed to be: 1500
135: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
135: PARMS is add;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha
135: EXPECTED_ERRNO is 
129: Not an error
 69/571 Test #129: plm-add-a .............................   Passed    0.36 sec
test 138
        Start 138: plm-add-vf-b

138: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=average;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
138: Test timeout computed to be: 1500
138: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
138: PARMS is average;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha
138: EXPECTED_ERRNO is 
138: RETVAL: 0
138: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd
138: 
138: STDERR: 
138: Not an error
 70/571 Test #138: plm-add-vf-b ..........................   Passed    0.22 sec
test 141
        Start 141: plm-adjust-a

141: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd;--pw-linear;0,100" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
141: Test timeout computed to be: 1500
141: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
141: PARMS is adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd;--pw-linear;0,100
141: EXPECTED_ERRNO is 
135: RETVAL: 0
135: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd
135: 
135: STDERR: 
107: RETVAL: 0
107: STDOUT: Reconstructing...
107: Processing image 0
107: Processing image 1
107: Processing image 2
107: Processing image 3
107: Processing image 4
107: Processing image 5
107: Processing image 6
107: Processing image 7
107: Processing image 8
107: Processing image 9
107: Processing image 10
107: Processing image 11
107: Processing image 12
107: Processing image 13
107: Processing image 14
107: Processing image 15
107: Processing image 16
107: Processing image 17
107: Processing image 18
107: Processing image 19
107: I/O time (total) = 0.00286031
107: I/O time (per image) = 0.000143015
107: Filter time = 0
107: Filter time (per image) = 0
107: Backprojection time = 0.535709
107: Backprojection time (per image) = 0.0267855
107: Writing output volume(s)...
107:  done.
107: 
107: 
107: STDERR: 
135: Not an error
 71/571 Test #135: plm-add-vf-a ..........................   Passed    0.38 sec
test 144
        Start 144: plm-adjust-b

144: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd;--pw-linear;-inf,1,0,100,inf,1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
144: Test timeout computed to be: 1500
144: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
144: PARMS is adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd;--pw-linear;-inf,1,0,100,inf,1
144: EXPECTED_ERRNO is 
107: Not an error
 72/571 Test #107: fdk-cpu-a .............................   Passed    1.69 sec
test 147
        Start 147: plm-adjust-c

147: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd;--linear;100,1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
147: Test timeout computed to be: 1500
141: RETVAL: 0
141: STDOUT: Applying piece-wise linear transform...
141:  done.
141: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd
141: Finished!
141: 
141: STDERR: 
147: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
147: PARMS is adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd;--linear;100,1
147: EXPECTED_ERRNO is 
141: Not an error
 73/571 Test #141: plm-adjust-a ..........................   Passed    0.31 sec
test 150
        Start 150: plm-adjust-d

150: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd;--pw-linear;-inf,0,-800,-800,-600,-600,inf,0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
150: Test timeout computed to be: 1500
150: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
150: PARMS is adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd;--pw-linear;-inf,0,-800,-800,-600,-600,inf,0
150: EXPECTED_ERRNO is 
147: RETVAL: 0
147: STDOUT: Applying shift=100 and scale=1 ... done.
147: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd
147: Finished!
147: 
147: STDERR: 
144: RETVAL: 0
144: STDOUT: Applying piece-wise linear transform...
144:  done.
144: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd
144: Finished!
144: 
144: STDERR: 
147: Not an error
 74/571 Test #147: plm-adjust-c ..........................   Passed    0.26 sec
test 153
        Start 153: plm-adjust-e

153: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-e" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd;--linear;1000,2.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
153: Test timeout computed to be: 1500
153: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
153: PARMS is adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd;--linear;1000,2.5
153: EXPECTED_ERRNO is 
144: Not an error
 75/571 Test #144: plm-adjust-b ..........................   Passed    0.41 sec
test 156
        Start 156: plm-adjust-f

156: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-f" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd;--hist-match;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--hist-levels;128;--hist-points;5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
156: Test timeout computed to be: 1500
156: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
156: PARMS is adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd;--hist-match;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--hist-levels;128;--hist-points;5
156: EXPECTED_ERRNO is 
150: RETVAL: 0
150: STDOUT: Applying piece-wise linear transform...
150:  done.
150: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd
150: Finished!
150: 
150: STDERR: 
153: RETVAL: 0
153: STDOUT: Applying shift=1000 and scale=2.5 ... done.
153: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd
153: Finished!
153: 
153: STDERR: 
150: Not an error
 76/571 Test #150: plm-adjust-d ..........................   Passed    0.36 sec
test 159
        Start 159: plm-adjust-g

159: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-g" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd;--linear-match;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
159: Test timeout computed to be: 1500
153: Not an error
 77/571 Test #153: plm-adjust-e ..........................   Passed    0.24 sec
test 162
        Start 162: plm-adjust-h

162: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-h" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd;--linear-match;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--input-mask;donut-2.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
162: Test timeout computed to be: 1500
159: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
159: PARMS is adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd;--linear-match;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha
159: EXPECTED_ERRNO is 
162: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
162: PARMS is adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd;--linear-match;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--input-mask;donut-2.mha
162: EXPECTED_ERRNO is 
156: RETVAL: 0
156: STDOUT: Performing histogram matching...
156:  done.
156: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd
156: Finished!
156: 
156: STDERR: 
156: Not an error
 78/571 Test #156: plm-adjust-f ..........................   Passed    0.37 sec
test 165
        Start 165: plm-adjust-i

165: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-i" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd;--local-match;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd;--local-shift-out;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
165: Test timeout computed to be: 1500
165: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
165: PARMS is adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd;--local-match;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd;--local-shift-out;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd
165: EXPECTED_ERRNO is 
159: RETVAL: 0
159: STDOUT: Computing statistics for linear match...
159: Adjusting image. shift = 0.289174; scale = 0.000314475 done.
159: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd
159: Finished!
159: 
159: STDERR: 
162: RETVAL: 0
162: STDOUT: Computing statistics for linear match...
162: Time = 0.001235 seconds
162: Adjusting image. shift = 0.158838; scale = 0.000442518 done.
162: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd
162: Finished!
162: 
162: STDERR: 
159: Not an error
 79/571 Test #159: plm-adjust-g ..........................   Passed    0.39 sec
test 168
        Start 168: plm-adjust-j

168: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-j" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd;--local-match;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd;--local-shift-out;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd;--local-blending-off" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
168: Test timeout computed to be: 1500
162: Not an error
 80/571 Test #162: plm-adjust-h ..........................   Passed    0.39 sec
test 171
        Start 171: plm-boundary-a

171: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;adaptive;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
171: Test timeout computed to be: 1500
168: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
168: PARMS is adjust;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd;--local-match;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd;--local-shift-out;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd;--local-blending-off
168: EXPECTED_ERRNO is 
171: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
171: PARMS is boundary;--boundary-behavior;adaptive;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha
171: EXPECTED_ERRNO is 
171: RETVAL: 0
171: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd
171: 
171: STDERR: 
165: RETVAL: 0
165: STDOUT: Applying local intensity matching...
165: Time = 0.001268 seconds
165: Time = 0.001132 seconds
165: Time = 0.001217 seconds
165: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd
165: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd
165:  done.
165: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd
165: Finished!
165: 
165: STDERR: 
171: Not an error
 81/571 Test #171: plm-boundary-a ........................   Passed    0.24 sec
test 174
        Start 174: plm-boundary-b

174: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;zero-pad;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
174: Test timeout computed to be: 1500
165: Not an error
 82/571 Test #165: plm-adjust-i ..........................   Passed    0.44 sec
test 177
        Start 177: plm-boundary-c

177: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;edge-pad;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
177: Test timeout computed to be: 1500
174: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
174: PARMS is boundary;--boundary-behavior;zero-pad;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha
174: EXPECTED_ERRNO is 
177: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
177: PARMS is boundary;--boundary-behavior;edge-pad;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha
177: EXPECTED_ERRNO is 
168: RETVAL: 0
168: STDOUT: Applying local intensity matching...
168: Time = 0.001041 seconds
168: Time = 0.001025 seconds
168: Time = 0.000981 seconds
168: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd
168: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd
168:  done.
168: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd
168: Finished!
168: 
168: STDERR: 
168: Not an error
177: RETVAL: 0
177: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd
177: 
177: STDERR: 
 83/571 Test #168: plm-adjust-j ..........................   Passed    0.44 sec
test 180
        Start 180: plm-boundary-d

180: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;adaptive;--boundary-type;interior-face;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
180: Test timeout computed to be: 1500
180: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
180: PARMS is boundary;--boundary-behavior;adaptive;--boundary-type;interior-face;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha
180: EXPECTED_ERRNO is 
177: Not an error
 84/571 Test #177: plm-boundary-c ........................   Passed    0.22 sec
test 183
        Start 183: plm-boundary-e

183: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-e" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;edge-pad;--boundary-type;interior-face;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
183: Test timeout computed to be: 1500
174: RETVAL: 0
174: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd
174: 
174: STDERR: 
183: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
183: PARMS is boundary;--boundary-behavior;edge-pad;--boundary-type;interior-face;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha
183: EXPECTED_ERRNO is 
174: Not an error
 85/571 Test #174: plm-boundary-b ........................   Passed    0.35 sec
test 189
        Start 189: plm-convert-dicom-b

189: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--filenames-without-uids;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom;--metadata;0018,5100&equal&FFS" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
189: Test timeout computed to be: 1500
189: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
189: PARMS is convert;--filenames-without-uids;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom;--metadata;0018,5100&equal&FFS
189: EXPECTED_ERRNO is 
180: RETVAL: 0
180: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd
180: 
180: STDERR: 
183: RETVAL: 0
183: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd
183: 
183: STDERR: 
180: Not an error
 86/571 Test #180: plm-boundary-d ........................   Passed    0.33 sec
test 192
        Start 192: plm-convert-dicom-c

192: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom/;--output-prefix;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
192: Test timeout computed to be: 1500
192: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
192: PARMS is convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom/;--output-prefix;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix
192: EXPECTED_ERRNO is 
189: RETVAL: 0
189: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3357517.1640785960.95922RTDOSE
189: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3357517.1640785960.95922RTSTRUCT
189: Found DCM_ReferencedFrameOfReferenceSequence!
189: Found DCM_RTReferencedStudySequence!
189: Trying to load rt structure set.
189: Adding structure (1), Foreground
189: Structure 1 has color 255\0\0
189: Trying to load rt dose.
189: Load: DoseGridScaling = 0.000000
189: RTDOSE: dim = 38 38 38
189:   ipp = -243.421005 -243.421005 -243.421005
189:   spc = 13.157900 13.157900 13.157900
189:   dc  = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000
189: Bits_alloc: 32
189: Bits_stored: 32
189: High_bit: 31
189: Pixel_rep: 0
189: rc = 1, length = 109744, npix = 54872
189: Setting PIH from RDD
189: PIH is:
189: Origin = -243.4211 -243.4211 -243.4211
189: Size = 38 38 38
189: Spacing = 13.1579 13.1579 13.1579
189: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
189: Rt_study_warp: Convert ss_img to cxt.
189: Rt_study_warp: Apply dicom_dir.
189: Rt_study_warp: Set geometry from PIH.
189: Rt_study_warp: Set rasterization geometry.
189: rast_dim = 512 512 7
189: rast_offset = -55.2632 -55.2632 -46.0526
189: rast_spacing = 0.215872 0.215872 13.1579
189: Rt_study_warp: warp and save ss.
189: Warp_and_save_ss: save_ss_img
189: Rt_study_warp: Save dicom.
189: Keyholizing structure 0.
189: Write: DoseGridScaling = 0.000000
189: Finished!
189: 
189: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
189: 
183: Not an error
189: Not an error
 87/571 Test #183: plm-boundary-e ........................   Passed    0.39 sec
test 198
        Start 198: plm-convert-dicom-donut-a

198: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
198: Test timeout computed to be: 1500
 88/571 Test #189: plm-convert-dicom-b ...................   Passed    0.29 sec
test 201
        Start 201: plm-convert-dicom-donut-b

201: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd;--xor-contours" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
201: Test timeout computed to be: 1500
198: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
198: PARMS is convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd
198: EXPECTED_ERRNO is 
201: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
201: PARMS is convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd;--xor-contours
201: EXPECTED_ERRNO is 
110: RETVAL: 0
110: STDOUT: Reconstructing...
110: Processing image 0
110: Processing image 1
110: Processing image 2
110: Processing image 3
110: Processing image 4
110: Processing image 5
110: Processing image 6
110: Processing image 7
110: Processing image 8
110: Processing image 9
110: Processing image 10
110: Processing image 11
110: Processing image 12
110: Processing image 13
110: Processing image 14
110: Processing image 15
110: Processing image 16
110: Processing image 17
110: Processing image 18
110: Processing image 19
110: I/O time (total) = 0.00196958
110: I/O time (per image) = 9.84788e-05
110: Filter time = 0
110: Filter time (per image) = 0
110: Backprojection time = 2.3084
110: Backprojection time (per image) = 0.11542
110: Writing output volume(s)...
110:  done.
110: 
110: 
110: STDERR: 
110: Not an error
 89/571 Test #110: fdk-cpu-d .............................   Passed    3.67 sec
test 205
        Start 205: plm-convert-cxt

205: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-cxt" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha;--output-ss-list;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
205: Test timeout computed to be: 1500
201: RETVAL: 0
201: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3358249.1640785960.30069RTDOSE
201: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3358249.1640785960.30069RTSTRUCT
201: Found DCM_ReferencedFrameOfReferenceSequence!
201: Found DCM_RTReferencedStudySequence!
201: Trying to load rt structure set.
201: Adding structure (1), Foreground
201: Structure 1 has color 255\0\0
201: Trying to load rt dose.
201: Load: DoseGridScaling = 0.000000
201: RTDOSE: dim = 38 38 38
201:   ipp = -25.000000 -25.000000 -25.000000
201:   spc = 1.315790 1.315790 1.315790
201:   dc  = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000
201: Bits_alloc: 32
201: Bits_stored: 32
201: High_bit: 31
201: Pixel_rep: 0
201: rc = 1, length = 109744, npix = 54872
201: Setting PIH from RDD
201: PIH is:
201: Origin = -25.0000 -25.0000 -25.0000
201: Size = 38 38 38
201: Spacing = 1.3158 1.3158 1.3158
201: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
201: Rt_study_warp: Convert ss_img to cxt.
201: Rt_study_warp: Apply dicom_dir.
201: Rt_study_warp: Set geometry from PIH.
201: Rt_study_warp: Set rasterization geometry.
201: rast_dim = 512 512 14
201: rast_offset = -10.3618 -10.3618 -9.21053
201: rast_spacing = 0.0404759 0.0404759 1.31579
201: Rt_study_warp: warp and save ss.
201: Warp_and_save_ss: seg->rasterize
201: Rasterizing...
201: Converting...
201: Finished rasterization.
201: Warp_and_save_ss: save_ss_img
201: save_ss_img: save_ss_image
201: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd
201: Finished!
201: 
201: STDERR: 
198: RETVAL: 0
198: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3358249.1640785960.30069RTDOSE
198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3358249.1640785960.30069RTSTRUCT
198: Found DCM_ReferencedFrameOfReferenceSequence!
198: Found DCM_RTReferencedStudySequence!
198: Trying to load rt structure set.
198: Adding structure (1), Foreground
198: Structure 1 has color 255\0\0
198: Trying to load rt dose.
198: Load: DoseGridScaling = 0.000000
198: RTDOSE: dim = 38 38 38
198:   ipp = -25.000000 -25.000000 -25.000000
198:   spc = 1.315790 1.315790 1.315790
198:   dc  = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000
198: Bits_alloc: 32
198: Bits_stored: 32
198: High_bit: 31
198: Pixel_rep: 0
198: rc = 1, length = 109744, npix = 54872
198: Setting PIH from RDD
198: PIH is:
198: Origin = -25.0000 -25.0000 -25.0000
198: Size = 38 38 38
198: Spacing = 1.3158 1.3158 1.3158
198: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
198: Rt_study_warp: Convert ss_img to cxt.
198: Rt_study_warp: Apply dicom_dir.
198: Rt_study_warp: Set geometry from PIH.
198: Rt_study_warp: Set rasterization geometry.
198: rast_dim = 512 512 14
198: rast_offset = -10.3618 -10.3618 -9.21053
198: rast_spacing = 0.0404759 0.0404759 1.31579
198: Rt_study_warp: warp and save ss.
198: Warp_and_save_ss: seg->rasterize
198: Rasterizing...
198: Converting...
198: Finished rasterization.
198: Warp_and_save_ss: save_ss_img
198: save_ss_img: save_ss_image
198: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd
198: Finished!
198: 
198: STDERR: 
205: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
205: PARMS is convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha;--output-ss-list;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.txt
205: EXPECTED_ERRNO is 
198: Not an error
 90/571 Test #198: plm-convert-dicom-donut-a .............   Passed    0.34 sec
test 209
        Start 209: plm-convert-dose-scale

209: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dose-scale" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input-dose-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-dose-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha;--dose-scale;77.7" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
209: Test timeout computed to be: 1500
201: Not an error
 91/571 Test #201: plm-convert-dicom-donut-b .............   Passed    0.34 sec
test 212
        Start 212: plm-crop-a

212: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha;--voxels;5 15 3 18 7 9" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
212: Test timeout computed to be: 1500
209: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
209: PARMS is convert;--input-dose-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-dose-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha;--dose-scale;77.7
209: EXPECTED_ERRNO is 
212: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
212: PARMS is crop;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha;--voxels;5 15 3 18 7 9
212: EXPECTED_ERRNO is 
192: RETVAL: 0
192: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3359034.1640785961.12961RTDOSE
192: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3359034.1640785961.12961RTSTRUCT
192: Found DCM_ReferencedFrameOfReferenceSequence!
192: Found DCM_RTReferencedStudySequence!
192: Trying to load rt structure set.
192: Adding structure (1), Body
192: Adding structure (2), Tumor
192: Adding structure (3), Lung
192: Structure 1 has color 255\0\0
192: Structure 2 has color 255\255\0
192: Structure 3 has color 255\0\255
192: Trying to load rt dose.
192: Load: DoseGridScaling = 0.000000
192: RTDOSE: dim = 100 100 100
192:   ipp = -247.500000 -247.500000 -247.500000
192:   spc = 5.000000 5.000000 5.000000
192:   dc  = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000
192: Bits_alloc: 32
192: Bits_stored: 32
192: High_bit: 31
192: Pixel_rep: 0
192: rc = 1, length = 2000000, npix = 1000000
192: Setting PIH from RDD
192: PIH is:
192: Origin = -247.5000 -247.5000 -247.5000
192: Size = 100 100 100
192: Spacing = 5.0000 5.0000 5.0000
192: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
192: Rt_study_warp: Convert ss_img to cxt.
192: Rt_study_warp: Apply dicom_dir.
192: Rt_study_warp: Set geometry from PIH.
192: Rt_study_warp: Set rasterization geometry.
192: rast_dim = 512 512 99
192: rast_offset = -157.5 -157.5 -247.5
192: rast_spacing = 0.615234 0.615234 5
192: Rt_study_warp: warp and save ss.
192: Warp_and_save_ss: seg->rasterize
192: Rasterizing...
192: Converting...
192: Finished rasterization.
192: Warp_and_save_ss: save_ss_img
192: save_ss_img: save_prefix
192: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Body.mha
192: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha
192: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Lung.mha
192: Finished!
192: 
192: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
192: 
192: Not an error
 92/571 Test #192: plm-convert-dicom-c ...................   Passed    0.66 sec
test 215
        Start 215: plm-crop-b

215: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha;--coordinates;-15 10 3 18 -12 -7" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
215: Test timeout computed to be: 1500
215: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
215: PARMS is crop;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha;--coordinates;-15 10 3 18 -12 -7
215: EXPECTED_ERRNO is 
212: RETVAL: 0
212: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha
212: 
212: STDERR: 
209: RETVAL: 0
209: STDOUT: Setting PIH from DOSE
209: PIH is:
209: Origin = -243.4211 -243.4211 -243.4211
209: Size = 38 38 38
209: Spacing = 13.1579 13.1579 13.1579
209: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
209: Rt_study_warp: Saving dose image (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha)
209: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha
209: Rt_study_warp: warp and save ss.
209: Finished!
209: 
209: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
209: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
209: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
209: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
209: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
209: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
209: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
209: 
205: RETVAL: 0
205: STDOUT: CT_SERIES_UID|1.2.826.0.1.3680043.8.274.1.1.313262592.3365118.1640785963.33053|
205: CT_STUDY_UID|1.2.826.0.1.3680043.8.274.1.1.313262592.3365118.1640785963.33055|
205: CT_FRAME_OF_REFERENCE_UID|1.2.826.0.1.3680043.8.274.1.1.313262592.3365118.1640785963.33055|
205: PATIENT_NAME|ANONYMOUS|
205: PATIENT_ID|PL169952721236076|
205: PATIENT_SEX|O|
205: STUDY_ID||
205: OFFSET|-55.2632 -55.2632 -46.0526|
205: DIMENSION|512 512 7|
205: SPACING|0.215872 0.215872 13.1579|
205: ROI_NAMES||
205: Starting structure parsing
205: Starting contour parsing
205: Setting PIH from structure set spacing
205: PIH is:
205: Origin = -55.2632 -55.2632 -46.0526
205: Size = 512 512 7
205: Spacing = 0.2159 0.2159 13.1579
205: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
205: Rt_study_warp: Convert ss_img to cxt.
205: Rt_study_warp: Apply dicom_dir.
205: Rt_study_warp: Set geometry from PIH.
205: Rt_study_warp: Set rasterization geometry.
205: rast_dim = 512 512 7
205: rast_offset = -55.2632 -55.2632 -46.0526
205: rast_spacing = 0.215872 0.215872 13.1579
205: Rt_study_warp: warp and save ss.
205: Warp_and_save_ss: seg->rasterize
205: Rasterizing...
205: Converting...
205: Finished rasterization.
205: Warp_and_save_ss: save_ss_img
205: save_ss_img: save_ss_image
205: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha
205: save_ss_img: save_ss_list
205: Done.
205: Finished!
205: 
205: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
205: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
205: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
205: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
205: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
205: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
205: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
205: 
212: Not an error
 93/571 Test #212: plm-crop-a ............................   Passed    0.41 sec
test 218
        Start 218: plm-crop-c

218: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha;--structure;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
218: Test timeout computed to be: 1500
209: Not an error
 94/571 Test #209: plm-convert-dose-scale ................   Passed    0.43 sec
test 252
        Start 252: plm-fill-a

252: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-fill-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fill;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha;--mask;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
252: Test timeout computed to be: 1500
205: Not an error
 95/571 Test #205: plm-convert-cxt .......................   Passed    0.47 sec
test 255
        Start 255: plm-mask-a

255: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-mask-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=mask;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha;--mask;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--mask-value;-1000" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
255: Test timeout computed to be: 1500
218: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
218: PARMS is crop;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha;--structure;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha
218: EXPECTED_ERRNO is 
252: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
252: PARMS is fill;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha;--mask;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha
252: EXPECTED_ERRNO is 
255: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
255: PARMS is mask;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha;--mask;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--mask-value;-1000
255: EXPECTED_ERRNO is 
215: RETVAL: 0
215: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha
215: 
215: STDERR: 
215: Not an error
 96/571 Test #215: plm-crop-b ............................   Passed    0.36 sec
test 258
        Start 258: plm-gamma-a

258: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--compute-full-region;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
258: Test timeout computed to be: 1500
258: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
258: PARMS is gamma;--compute-full-region;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha
258: EXPECTED_ERRNO is 
255: RETVAL: 0
255: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha
255: Finished!
255: 
255: STDERR: 
218: RETVAL: 0
218: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha
218: 
218: STDERR: 
252: RETVAL: 0
252: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha
252: Finished!
252: 
252: STDERR: 
255: Not an error
218: Not an error
252: Not an error
 97/571 Test #252: plm-fill-a ............................   Passed    0.36 sec
test 261
        Start 261: plm-gamma-b

261: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
261: Test timeout computed to be: 1500
 98/571 Test #255: plm-mask-a ............................   Passed    0.36 sec
test 268
        Start 268: plm-maximum-a

268: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-maximum-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=maximum;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
268: Test timeout computed to be: 1500
 99/571 Test #218: plm-crop-c ............................   Passed    0.38 sec
test 271
        Start 271: plm-multiply-a

271: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=multiply;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
271: Test timeout computed to be: 1500
261: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
261: PARMS is gamma;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha
261: EXPECTED_ERRNO is 
268: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
268: PARMS is maximum;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha
268: EXPECTED_ERRNO is 
271: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
271: PARMS is multiply;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha
271: EXPECTED_ERRNO is 
258: RETVAL: 0
258: STDOUT: Gamma dose max is 10.000000
258: Time = 0.001007 seconds
258: Gamma calculation is under progress...
258: analysis threshold = 1.00 Gy 
258: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha
258: Pass rate = 100.000000 %
258: 
258: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
258: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
258: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
258: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
258: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
258: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
258: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
258: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
258: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
258: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
258: 
258: Not an error
100/571 Test #258: plm-gamma-a ...........................   Passed    0.49 sec
test 274
        Start 274: plm-multiply-vf-a

274: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-vf-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=multiply;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
274: Test timeout computed to be: 1500
271: RETVAL: 0
271: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd
271: 
271: STDERR: 
274: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
274: PARMS is multiply;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha
274: EXPECTED_ERRNO is 
268: RETVAL: 0
268: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd
268: 
268: STDERR: 
261: RETVAL: 0
261: STDOUT: Gamma dose max is 10.000000
261: Time = 0.001063 seconds
261: Gamma calculation is under progress...
261: analysis threshold = 1.00 Gy 
261: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha
261: Pass rate = 0.000000 %
261: 
261: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
261: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
261: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
261: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
261: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
261: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
261: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
261: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
261: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
261: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
261: 
271: Not an error
101/571 Test #271: plm-multiply-a ........................   Passed    0.37 sec
test 278
        Start 278: plm-reg-align-center

278: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-align-center" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
278: Test timeout computed to be: 1500
278: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
278: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center.txt
278: EXPECTED_ERRNO is 
268: Not an error
102/571 Test #268: plm-maximum-a .........................   Passed    0.42 sec
test 284
        Start 284: plm-reg-itk-rigid-a

284: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
284: Test timeout computed to be: 1500
284: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
284: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a.txt
284: EXPECTED_ERRNO is 
261: Not an error
103/571 Test #261: plm-gamma-b ...........................   Passed    0.48 sec
test 289
        Start 289: plm-reg-itk-similarity

289: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
289: Test timeout computed to be: 1500
289: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
289: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity.txt
289: EXPECTED_ERRNO is 
278: RETVAL: 0
278: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
278: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha
278: Launching registration worker thread
278: Inside registration worker thread
278: Doing registration stage
278: [1] xf_in->m_type = 0, xf_out->m_type = 0
278: [2] xf_out->m_type = 1, xf_in->m_type = 0
278: ** Registration worker thread finished.
278: Writing transformation ...
278: Warping...
278: plm_warp_itk: xform_to_itk_vf
278: plm_warp_itk: convert_to_itk
278: plm_warp_itk: warping...
278: Saving image...
278: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha
278: Load:   0.026768
278: Run:    0.000647068
278: Save:   0.00737286
278: Total:  0.0347879
278: Finished!
278: 
278: STDERR: 
274: RETVAL: 0
274: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd
274: 
274: STDERR: 
278: Not an error
104/571 Test #278: plm-reg-align-center ..................   Passed    0.25 sec
test 294
        Start 294: plm-reg-itk-bspline

294: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-bspline" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
294: Test timeout computed to be: 1500
274: Not an error
105/571 Test #274: plm-multiply-vf-a .....................   Passed    0.39 sec
test 297
        Start 297: plm-reg-itk-demons

297: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
297: Test timeout computed to be: 1500
294: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
294: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline.txt
294: EXPECTED_ERRNO is 
297: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
297: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.txt
297: EXPECTED_ERRNO is 
284: RETVAL: 0
284: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha
284: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha
284: Launching registration worker thread
284: Inside registration worker thread
284: Doing registration stage
284: [1] xf_in->m_type = 0, xf_out->m_type = 0
284: Fixed image for this stage:
284: Dim = 19 19 19
284: Origin = -236.842 -236.842 -236.842
284: Spacing = 26.3158 26.3158 26.3158
284: Direction Cosines =
284:  1 0 0
284:  0 1 0
284:  0 0 1
284: Moving image for this stage:
284: Dim = 19 19 19
284: Origin = -236.842 -236.842 -236.842
284: Spacing = 26.3158 26.3158 26.3158
284: Direction Cosines =
284:  1 0 0
284:  0 1 0
284:  0 0 1
284: Initial Parameters = [0, 0, 0, 0, 0, 0]
284: Starting ITK registration
284: StartEvent: [0, 0, 0, 0, 0, 0]
284: MSE [ 0,  0,10.00]  1339.481 [-2.3787882445900163e-20, 8.106231711095265e-8, -8.106231711602886e-8, 9.999999999999996, -1.0973359818106973e-14, -1.0957496630802156e-14] *
284: MSE [ 1,  1,10.00]   368.982 [3.966157596455287e-18, 1.6278511949519893e-7, -1.6278512055872085e-7, 19.999999999999915, 8.969852837815756e-7, 8.969852834830265e-7]    -970.50 *
284: MSE [ 2,  2, 5.00]   181.733 [-2.6349662607283784e-17, 5.896377564202198e-7, -5.896377772814028e-7, 15.000000000001307, 0.0000033932258793946106, 0.0000033932258279712768]    -187.25 *
284: MSE [ 3,  3, 2.50]   183.524 [-3.336268639649333e-17, 8.131742570250174e-7, -8.131742896291014e-7, 17.499999999998433, 0.000006036537006153386, 0.000006036536833431103]       1.79 (tol)
284: EndEvent: [-3.336268639649333e-17, 8.131742570250174e-7, -8.131742896291014e-7, 17.499999999998433, 0.000006036537006153386, 0.000006036536833431103]
284: VersorRigid3DTransformOptimizer: Maximum number of iterations (1) exceeded.
284: ITK registration complete
284: [2] xf_out->m_type = 2, xf_in->m_type = 0
284: Warping...
284: plm_warp_itk: xform_to_itk_vf
284: plm_warp_itk: convert_to_itk
284: plm_warp_itk: warping...
284: Saving image...
284: Trying to write image to plm-reg-itk-rigid-a-intermediate-img.mha
284: Doing registration stage
284: [1] xf_in->m_type = 2, xf_out->m_type = 0
284: Fixed image for this stage:
284: Dim = 38 38 38
284: Origin = -243.421 -243.421 -243.421
284: Spacing = 13.1579 13.1579 13.1579
284: Direction Cosines =
284:  1 0 0
284:  0 1 0
284:  0 0 1
284: Moving image for this stage:
284: Dim = 38 38 38
284: Origin = -243.421 -243.421 -243.421
284: Spacing = 13.1579 13.1579 13.1579
284: Direction Cosines =
284:  1 0 0
284:  0 1 0
284:  0 0 1
284: Initial Parameters = [3.966157596455287e-18, 1.6278511949519893e-7, -1.6278512055872085e-7, 19.999999999999915, 8.969852837815756e-7, 8.969852834830265e-7]
284: Starting ITK registration
284: StartEvent: [3.966157596455287e-18, 1.6278511949519893e-7, -1.6278512055872085e-7, 19.999999999999915, 8.969852837815756e-7, 8.969852834830265e-7]
284: MSE [ 0,  0,10.00]   616.559 [2.7933704928538196e-16, -0.0000033302360495702866, 0.0000033302359476049187, 10.000000000052827, -0.000021019174512879062, -0.000021019174440846262] *
284: MSE [ 1,  1, 5.00]  1335.870 [9.154323911520667e-17, -0.0000019933576717437256, 0.0000019933576419283217, 14.999999999919202, -0.00004672874495665735, -0.00004672874598302067]     719.31
284: MSE [ 2,  2, 5.00]   909.428 [1.8469372844419626e-18, -9.215023615948799e-7, 9.215023821900767e-7, 19.999999999667782, -0.000011337953198310156, -0.000011337953395562635]    -426.44
284: MSE [ 3,  3, 2.50]   616.561 [5.022900466321012e-16, 0.000004240909186406351, -0.0000042409090794891276, 17.50000000232825, 0.00006956053055678192, 0.00006956053212923486]    -292.87
284: MSE [ 4,  4, 1.25]   668.182 [1.7060517290527483e-16, 0.0000031399063411111454, -0.0000031399063057766264, 18.750000001560984, 0.000038669894869796427, 0.00003866989574720384]      51.62
284: EndEvent: [1.7060517290527483e-16, 0.0000031399063411111454, -0.0000031399063057766264, 18.750000001560984, 0.000038669894869796427, 0.00003866989574720384]
284: VersorRigid3DTransformOptimizer: Maximum number of iterations (5) exceeded.
284: ITK registration complete
284: [2] xf_out->m_type = 2, xf_in->m_type = 2
284: ** Registration worker thread finished.
284: Writing transformation ...
284: Warping...
284: plm_warp_itk: xform_to_itk_vf
284: plm_warp_itk: convert_to_itk
284: plm_warp_itk: warping...
284: Saving image...
284: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha
284: Saving vf...
284: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-vf.mha
284: Load:   0.057081
284: Run:    0.0860319
284: Save:   0.0294769
284: Total:  0.17259
284: Finished!
284: 
284: STDERR: 
289: RETVAL: 0
289: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha
289: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha
289: Launching registration worker thread
289: Inside registration worker thread
289: Doing registration stage
289: [1] xf_in->m_type = 0, xf_out->m_type = 0
289: Fixed image for this stage:
289: Dim = 19 19 19
289: Origin = -236.842 -236.842 -236.842
289: Spacing = 26.316 26.316 26.316
289: Direction Cosines =
289:  1 0 0
289:  0 1 0
289:  0 0 1
289: Moving image for this stage:
289: Dim = 19 19 19
289: Origin = -236.842 -236.842 -236.842
289: Spacing = 26.3158 26.3158 26.3158
289: Direction Cosines =
289:  1 0 0
289:  0 1 0
289:  0 0 1
289: Initial Parameters = [0, 0, 0, 0, 0, 0, 1]
289: Starting ITK registration
289: StartEvent: []
289: MSE [ 1,  0,-1.00] 50982.091 [0, 0, 0, 0, 0, 0, 1] *
289: MSE [ 2,  1,-1.00] 43798.343 [0, 0, 0, -0.4593838948324258, 0.47067772433152183, -1.9737006269275084, 0.8764184123566656]   -7183.75 *
289: MSE [ 3,  2,-1.00] 39030.004 [0, 0, 0, -0.9555136001504676, 0.27777212751612945, -2.9263769176831524, 0.7999915714784266]   -4768.34 *
289: MSE [ 4,  3,-1.00] 39030.004 [0, 0, 0, -0.9555136001504676, 0.27777212751612945, -2.9263769176831524, 0.7999915714784266]       0.00
289: MSE [ 5,  4,-1.00] 36227.691 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945]   -2802.31 *
289: MSE [ 6,  5,-1.00] 36227.691 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945]       0.00 (tol)
289: EndEvent: [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945]
289: OnePlusOneEvolutionaryOptimizer: Maximum number of iterations (1) exceeded. 
289: ITK registration complete
289: [2] xf_out->m_type = 4, xf_in->m_type = 0
289: Warping...
289: plm_warp_itk: xform_to_itk_vf
289: plm_warp_itk: convert_to_itk
289: plm_warp_itk: warping...
289: Saving image...
289: Trying to write image to plm-reg-itk-similarity-intermediate-img.mha
289: Doing registration stage
289: [1] xf_in->m_type = 4, xf_out->m_type = 0
289: Fixed image for this stage:
289: Dim = 38 38 38
289: Origin = -243.421 -243.421 -243.421
289: Spacing = 13.158 13.158 13.158
289: Direction Cosines =
289:  1 0 0
289:  0 1 0
289:  0 0 1
289: Moving image for this stage:
289: Dim = 38 38 38
289: Origin = -243.421 -243.421 -243.421
289: Spacing = 13.1579 13.1579 13.1579
289: Direction Cosines =
289:  1 0 0
289:  0 1 0
289:  0 0 1
289: Initial Parameters = [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945]
289: Starting ITK registration
289: StartEvent: []
289: MSE [ 1,  0,-1.00] 53402.170 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] *
289: MSE [ 2,  1,-1.00] 40041.651 [0, 0, 0, -1.9937447986384402, -0.27976460247132845, -4.526111859506667, 0.6346268196936601]  -13360.52 *
289: MSE [ 3,  2,-1.00] 32234.274 [0, 0, 0, -2.4898745039564822, -0.4726701992867208, -5.478788150262311, 0.558199978815421]   -7807.38 *
289: MSE [ 4,  3,-1.00] 32234.274 [0, 0, 0, -2.4898745039564822, -0.4726701992867208, -5.478788150262311, 0.558199978815421]       0.00
289: MSE [ 5,  4,-1.00] 31471.432 [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889]    -762.84 *
289: MSE [ 6,  5,-1.00] 31471.432 [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889]       0.00 (tol)
289: EndEvent: [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889]
289: OnePlusOneEvolutionaryOptimizer: Maximum number of iterations (1) exceeded. 
289: ITK registration complete
289: [2] xf_out->m_type = 4, xf_in->m_type = 4
289: Warping...
289: plm_warp_itk: xform_to_itk_vf
289: plm_warp_itk: convert_to_itk
289: plm_warp_itk: warping...
289: Saving image...
289: Trying to write image to plm-reg-itk-similarity-img.mha
289: ** Registration worker thread finished.
289: Writing transformation ...
289: Warping...
289: plm_warp_itk: xform_to_itk_vf
289: plm_warp_itk: convert_to_itk
289: plm_warp_itk: warping...
289: Saving image...
289: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-a-img.mha
289: Saving vf...
289: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-a-vf.mha
289: Load:   0.057245
289: Run:    0.0802898
289: Save:   0.0270391
289: Total:  0.164574
289: Finished!
289: 
289: STDERR: 
284: Not an error
106/571 Test #284: plm-reg-itk-rigid-a ...................   Passed    0.55 sec
test 307
        Start 307: plm-bsp-mse-c

307: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
307: Test timeout computed to be: 1500
289: Not an error
107/571 Test #289: plm-reg-itk-similarity ................   Passed    0.51 sec
test 310
        Start 310: plm-bsp-mse-g

310: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-g" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
310: Test timeout computed to be: 1500
307: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
307: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c.txt
307: EXPECTED_ERRNO is 
310: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
310: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g.txt
310: EXPECTED_ERRNO is 
297: RETVAL: 0
297: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
297: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
297: Launching registration worker thread
297: Inside registration worker thread
297: Doing registration stage
297: [1] xf_in->m_type = 0, xf_out->m_type = 0
297: Ready to start registration.
297: MSE [   0] 18945.891 [ 0.039 secs]
297: MSE [   1]  9752.760 [ 0.052 secs]
297: MSE [   2]  3751.365 [ 0.037 secs]
297: MSE [   3]   960.721 [ 0.033 secs]
297: MSE [   4]   204.827 [ 0.032 secs]
297: Done with registration.  Writing output...
297: Deformation stats (out)
297: VF_MAX = 97.6986   VF_AVG = 31.9237
297: [2] xf_out->m_type = 8, xf_in->m_type = 0
297: Warping...
297: plm_warp_itk: xform_to_itk_vf
297: ** Registration worker thread finished.
297: plm_warp_itk: convert_to_itk
297: plm_warp_itk: warping...
297: Saving image...
297: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha
297: Saving vf...
297: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-vf.mha
297: Load:   0.0601602
297: Run:    0.193511
297: Save:   0.0259562
297: Total:  0.279627
297: Finished!
297: 
297: STDERR: 
297: Not an error
108/571 Test #297: plm-reg-itk-demons ....................   Passed    0.74 sec
test 316
        Start 316: plm-bsp-mse-i

316: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-i" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
316: Test timeout computed to be: 1500
316: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
316: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i.txt
316: EXPECTED_ERRNO is 
307: RETVAL: 0
307: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
307: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
307: Launching registration worker thread
307: Inside registration worker thread
307: Doing registration stage
307: [1] xf_in->m_type = 0, xf_out->m_type = 0
307: RESAMPLE 1 1: (2 2 2), (2 2 2)
307: RESAMPLE 1 1: (2 2 2), (2 2 2)
307: volume_calc_grad complete.
307: bspline_xform_initialize
307: rdims = (2,2,2)
307: vox_per_rgn = (11,11,11)
307: cdims = (5 5 5)
307: Algorithm flavor = c
307: Threading = 0
307: >> Checking JH allocation
307: BSPLINE PARMS
307: max_its = 5
307: max_feval = 5
307: BSPLINE XFORM HEADER
307: vox_per_rgn = 11 11 11
307: roi_offset = 0 0 0
307: roi_dim = 19 19 19
307: img_dc = 1 0 0 0 1 0 0 0 1
307: BST METRICS
307: MET 110100 MSE 1.000000
307: Setting nmax, mmax = 375 21
307: >>> START     
307: This problem is unconstrained.
307: [ 0,  0] MSE    18756.248 NV   6859 GM -2980.062 GN       852 [     0.006 s ]
307:          CMIN   0.00 CAVG   0.00 CMAX   0.00
307:          LSD   0.00
307: [ 0,  1] MSE    17838.643 NV   6859 GM -2882.390 GN       824 [     0.006 s ]
307:          CMIN  -0.07 CAVG   0.01 CMAX   0.68
307:          LSD   1.00
307: [ 0,  2] MSE    14464.868 NV   6858 GM -2822.145 GN       824 [     0.006 s ]
307:          CMIN  -0.35 CAVG   0.05 CMAX   3.40
307:          LSD   5.00
307: [ 0,  3] MSE     3829.069 NV   6286 GM -1585.570 GN       459 [     0.018 s ]
307:          CMIN  -1.48 CAVG   0.20 CMAX  14.26
307:          LSD  21.00
307: [ 1,  4] MSE     3098.610 NV   5455 GM  1176.112 GN       399 [     0.005 s ]
307:          CMIN  -1.74 CAVG   0.44 CMAX  32.50
307:          LSD  27.95
307: [ 2,  5] MSE      282.038 NV   5851 GM    54.493 GN      43.4 [     0.005 s ]
307:          CMIN  -1.73 CAVG   0.34 CMAX  23.99
307:          LSD  13.11
307: [2] xf_out->m_type = 9, xf_in->m_type = 0
307: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
307: bspline_xform_initialize
307: rdims = (2,2,2)
307: vox_per_rgn = (22,22,22)
307: cdims = (5 5 5)
307: ** Registration worker thread finished.
307: Writing transformation ...
307: Warping...
307: Running: plm_warp_native
307: Converting input image...
307: Converting xform...
307: bspline_xform_initialize
307: rdims = (2,2,2)
307: vox_per_rgn = (22,22,22)
307: cdims = (5 5 5)
307: Creating output vf...
307: Creating output volume...
307: Running native warper...
307: bspline_warp complete.
307: Back convert to original type...
307: > Convert vf to itk
307: > Conversion complete.
307: plm_warp_native is complete.
307: Saving image...
307: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha
307: Saving vf...
307: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-vf.mha
307: Load:   0.106672
307: Run:    0.0799439
307: Save:   0.061482
307: Total:  0.248098
307: Finished!
307: 
307: STDERR: 
310: RETVAL: 0
310: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
310: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
310: Launching registration worker thread
310: Inside registration worker thread
310: Doing registration stage
310: [1] xf_in->m_type = 0, xf_out->m_type = 0
310: RESAMPLE 1 1: (2 2 2), (2 2 2)
310: RESAMPLE 1 1: (2 2 2), (2 2 2)
310: volume_calc_grad complete.
310: bspline_xform_initialize
310: rdims = (2,2,2)
310: vox_per_rgn = (11,11,11)
310: cdims = (5 5 5)
310: Algorithm flavor = g
310: Threading = 0
310: >> Checking JH allocation
310: BSPLINE PARMS
310: max_its = 5
310: max_feval = 5
310: BSPLINE XFORM HEADER
310: vox_per_rgn = 11 11 11
310: roi_offset = 0 0 0
310: roi_dim = 19 19 19
310: img_dc = 1 0 0 0 1 0 0 0 1
310: BST METRICS
310: MET 110100 MSE 1.000000
310: Setting nmax, mmax = 375 21
310: >>> START     
310: This problem is unconstrained.
310: [ 0,  0] MSE    18756.236 NV   6859 GM -2980.067 GN       852 [     0.017 s ]
310:          CMIN   0.00 CAVG   0.00 CMAX   0.00
310:          LSD   0.00
310: [ 0,  1] MSE    17838.633 NV   6859 GM -2882.393 GN       824 [     0.031 s ]
310:          CMIN  -0.07 CAVG   0.01 CMAX   0.68
310:          LSD   1.00
310: [ 0,  2] MSE    14464.859 NV   6858 GM -2822.149 GN       824 [     0.015 s ]
310:          CMIN  -0.35 CAVG   0.05 CMAX   3.40
310:          LSD   5.00
310: [ 0,  3] MSE     3829.066 NV   6286 GM -1585.570 GN       459 [     0.019 s ]
310:          CMIN  -1.48 CAVG   0.20 CMAX  14.26
310:          LSD  21.00
310: [ 1,  4] MSE     3098.538 NV   5455 GM  1176.092 GN       399 [     0.009 s ]
310:          CMIN  -1.74 CAVG   0.44 CMAX  32.50
310:          LSD  27.95
310: [ 2,  5] MSE      282.038 NV   5851 GM    54.495 GN      43.4 [     0.019 s ]
310:          CMIN  -1.73 CAVG   0.34 CMAX  23.99
310:          LSD  13.11
310: [2] xf_out->m_type = 9, xf_in->m_type = 0
310: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
310: bspline_xform_initialize
310: rdims = (2,2,2)
310: vox_per_rgn = (22,22,22)
310: cdims = (5 5 5)
310: ** Registration worker thread finished.
310: Writing transformation ...
310: Warping...
310: Running: plm_warp_native
310: Converting input image...
310: Converting xform...
310: bspline_xform_initialize
310: rdims = (2,2,2)
310: vox_per_rgn = (22,22,22)
310: cdims = (5 5 5)
310: Creating output vf...
310: Creating output volume...
310: Running native warper...
310: bspline_warp complete.
310: Back convert to original type...
310: > Convert vf to itk
310: > Conversion complete.
310: plm_warp_native is complete.
310: Saving image...
310: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha
310: Saving vf...
310: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-vf.mha
310: Load:   0.103135
310: Run:    0.184167
310: Save:   0.046694
310: Total:  0.333996
310: Finished!
310: 
310: STDERR: 
307: Not an error
109/571 Test #307: plm-bsp-mse-c .........................   Passed    0.88 sec
test 319
        Start 319: plm-bsp-mse-k

319: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-k" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
319: Test timeout computed to be: 1500
310: Not an error
110/571 Test #310: plm-bsp-mse-g .........................   Passed    0.88 sec
test 322
        Start 322: plm-bsp-mse-l

322: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-l" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
322: Test timeout computed to be: 1500
319: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
319: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k.txt
319: EXPECTED_ERRNO is 
322: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
322: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l.txt
322: EXPECTED_ERRNO is 
316: RETVAL: 0
316: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
316: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
316: Launching registration worker thread
316: Inside registration worker thread
316: Doing registration stage
316: [1] xf_in->m_type = 0, xf_out->m_type = 0
316: RESAMPLE 1 1: (2 2 2), (2 2 2)
316: RESAMPLE 1 1: (2 2 2), (2 2 2)
316: volume_calc_grad complete.
316: bspline_xform_initialize
316: rdims = (2,2,2)
316: vox_per_rgn = (11,11,11)
316: cdims = (5 5 5)
316: Algorithm flavor = i
316: Threading = 0
316: >> Checking JH allocation
316: BSPLINE PARMS
316: max_its = 5
316: max_feval = 5
316: BSPLINE XFORM HEADER
316: vox_per_rgn = 11 11 11
316: roi_offset = 0 0 0
316: roi_dim = 19 19 19
316: img_dc = 1 0 0 0 1 0 0 0 1
316: BST METRICS
316: MET 110100 MSE 1.000000
316: Setting nmax, mmax = 375 21
316: >>> START     
316: This problem is unconstrained.
316: [ 0,  0] MSE    18756.236 NV   6859 GM -2980.067 GN       852 [     0.016 s ]
316:          CMIN   0.00 CAVG   0.00 CMAX   0.00
316:          LSD   0.00
316: [ 0,  1] MSE    17838.633 NV   6859 GM -2882.393 GN       824 [     0.015 s ]
316:          CMIN  -0.07 CAVG   0.01 CMAX   0.68
316:          LSD   1.00
316: [ 0,  2] MSE    14464.859 NV   6858 GM -2822.149 GN       824 [     0.031 s ]
316:          CMIN  -0.35 CAVG   0.05 CMAX   3.40
316:          LSD   5.00
316: [ 0,  3] MSE     3829.066 NV   6286 GM -1585.570 GN       459 [     0.010 s ]
316:          CMIN  -1.48 CAVG   0.20 CMAX  14.26
316:          LSD  21.00
316: [ 1,  4] MSE     3098.538 NV   5455 GM  1176.092 GN       399 [     0.008 s ]
316:          CMIN  -1.74 CAVG   0.44 CMAX  32.50
316:          LSD  27.95
316: [ 2,  5] MSE      282.038 NV   5851 GM    54.495 GN      43.4 [     0.007 s ]
316:          CMIN  -1.73 CAVG   0.34 CMAX  23.99
316:          LSD  13.11
316: [2] xf_out->m_type = 9, xf_in->m_type = 0
316: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
316: bspline_xform_initialize
316: rdims = (2,2,2)
316: vox_per_rgn = (22,22,22)
316: cdims = (5 5 5)
316: ** Registration worker thread finished.
316: Writing transformation ...
316: Warping...
316: Running: plm_warp_native
316: Converting input image...
316: Converting xform...
316: bspline_xform_initialize
316: rdims = (2,2,2)
316: vox_per_rgn = (22,22,22)
316: cdims = (5 5 5)
316: Creating output vf...
316: Creating output volume...
316: Running native warper...
316: bspline_warp complete.
316: Back convert to original type...
316: > Convert vf to itk
316: > Conversion complete.
316: plm_warp_native is complete.
316: Saving image...
316: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha
316: Saving vf...
316: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-vf.mha
316: Load:   0.10142
316: Run:    0.117657
316: Save:   0.04794
316: Total:  0.267017
316: Finished!
316: 
316: STDERR: 
316: Not an error
111/571 Test #316: plm-bsp-mse-i .........................   Passed    0.70 sec
test 333
        Start 333: plm-bsp-mi-c

333: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
333: Test timeout computed to be: 1500
333: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
333: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c.txt
333: EXPECTED_ERRNO is 
319: RETVAL: 0
319: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
319: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
319: Launching registration worker thread
319: Inside registration worker thread
319: Doing registration stage
319: [1] xf_in->m_type = 0, xf_out->m_type = 0
319: RESAMPLE 1 1: (2 2 2), (2 2 2)
319: RESAMPLE 1 1: (2 2 2), (2 2 2)
319: volume_calc_grad complete.
319: bspline_xform_initialize
319: rdims = (2,2,2)
319: vox_per_rgn = (11,11,11)
319: cdims = (5 5 5)
319: Algorithm flavor = k
319: Threading = 0
319: >> Checking JH allocation
319: BSPLINE PARMS
319: max_its = 5
319: max_feval = 5
319: BSPLINE XFORM HEADER
319: vox_per_rgn = 11 11 11
319: roi_offset = 0 0 0
319: roi_dim = 19 19 19
319: img_dc = 1 0 0 0 1 0 0 0 1
319: BST METRICS
319: MET 110100 MSE 1.000000
319: Setting nmax, mmax = 375 21
319: >>> START     
319: This problem is unconstrained.
319: [ 0,  0] MSE    18756.248 NV   6859 GM -2980.062 GN       852 [     0.004 s ]
319:          CMIN   0.00 CAVG   0.00 CMAX   0.00
319:          LSD   0.00
319: [ 0,  1] MSE    17838.643 NV   6859 GM -2882.390 GN       824 [     0.004 s ]
319:          CMIN  -0.07 CAVG   0.01 CMAX   0.68
319:          LSD   1.00
319: [ 0,  2] MSE    14464.868 NV   6858 GM -2822.145 GN       824 [     0.004 s ]
319:          CMIN  -0.35 CAVG   0.05 CMAX   3.40
319:          LSD   5.00
319: [ 0,  3] MSE     3829.069 NV   6286 GM -1585.570 GN       459 [     0.003 s ]
319:          CMIN  -1.48 CAVG   0.20 CMAX  14.26
319:          LSD  21.00
319: [ 1,  4] MSE     3098.610 NV   5455 GM  1176.112 GN       399 [     0.003 s ]
319:          CMIN  -1.74 CAVG   0.44 CMAX  32.50
319:          LSD  27.95
319: [ 2,  5] MSE      282.038 NV   5851 GM    54.493 GN      43.4 [     0.003 s ]
319:          CMIN  -1.73 CAVG   0.34 CMAX  23.99
319:          LSD  13.11
319: [2] xf_out->m_type = 9, xf_in->m_type = 0
319: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
319: bspline_xform_initialize
319: rdims = (2,2,2)
319: vox_per_rgn = (22,22,22)
319: cdims = (5 5 5)
319: ** Registration worker thread finished.
319: Writing transformation ...
319: Warping...
319: Running: plm_warp_native
319: Converting input image...
319: Converting xform...
319: bspline_xform_initialize
319: rdims = (2,2,2)
319: vox_per_rgn = (22,22,22)
319: cdims = (5 5 5)
319: Creating output vf...
319: Creating output volume...
319: Running native warper...
319: bspline_warp complete.
319: Back convert to original type...
319: > Convert vf to itk
319: > Conversion complete.
319: plm_warp_native is complete.
319: Saving image...
319: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha
319: Saving vf...
319: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-vf.mha
319: Load:   0.0347531
319: Run:    0.028193
319: Save:   0.0479021
319: Total:  0.110848
319: Finished!
319: 
319: STDERR: 
322: RETVAL: 0
322: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
322: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
322: Launching registration worker thread
322: Inside registration worker thread
322: Doing registration stage
322: [1] xf_in->m_type = 0, xf_out->m_type = 0
322: RESAMPLE 1 1: (2 2 2), (2 2 2)
322: RESAMPLE 1 1: (2 2 2), (2 2 2)
322: volume_calc_grad complete.
322: bspline_xform_initialize
322: rdims = (2,2,2)
322: vox_per_rgn = (11,11,11)
322: cdims = (5 5 5)
322: Algorithm flavor = l
322: Threading = 0
322: >> Checking JH allocation
322: BSPLINE PARMS
322: max_its = 5
322: max_feval = 5
322: BSPLINE XFORM HEADER
322: vox_per_rgn = 11 11 11
322: roi_offset = 0 0 0
322: roi_dim = 19 19 19
322: img_dc = 1 0 0 0 1 0 0 0 1
322: BST METRICS
322: MET 110100 MSE 1.000000
322: Setting nmax, mmax = 375 21
322: >>> START     
322: This problem is unconstrained.
322: [ 0,  0] MSE    18756.236 NV   6859 GM -2980.067 GN       852 [     0.003 s ]
322:          CMIN   0.00 CAVG   0.00 CMAX   0.00
322:          LSD   0.00
322: [ 0,  1] MSE    17838.633 NV   6859 GM -2882.393 GN       824 [     0.003 s ]
322:          CMIN  -0.07 CAVG   0.01 CMAX   0.68
322:          LSD   1.00
322: [ 0,  2] MSE    14464.859 NV   6858 GM -2822.149 GN       824 [     0.003 s ]
322:          CMIN  -0.35 CAVG   0.05 CMAX   3.40
322:          LSD   5.00
322: [ 0,  3] MSE     3829.066 NV   6286 GM -1585.570 GN       459 [     0.003 s ]
322:          CMIN  -1.48 CAVG   0.20 CMAX  14.26
322:          LSD  21.00
322: [ 1,  4] MSE     3098.538 NV   5455 GM  1176.092 GN       399 [     0.003 s ]
322:          CMIN  -1.74 CAVG   0.44 CMAX  32.50
322:          LSD  27.95
322: [ 2,  5] MSE      282.038 NV   5851 GM    54.495 GN      43.4 [     0.003 s ]
322:          CMIN  -1.73 CAVG   0.34 CMAX  23.99
322:          LSD  13.11
322: [2] xf_out->m_type = 9, xf_in->m_type = 0
322: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
322: bspline_xform_initialize
322: rdims = (2,2,2)
322: vox_per_rgn = (22,22,22)
322: cdims = (5 5 5)
322: ** Registration worker thread finished.
322: Writing transformation ...
322: Warping...
322: Running: plm_warp_native
322: Converting input image...
322: Converting xform...
322: bspline_xform_initialize
322: rdims = (2,2,2)
322: vox_per_rgn = (22,22,22)
322: cdims = (5 5 5)
322: Creating output vf...
322: Creating output volume...
322: Running native warper...
322: bspline_warp complete.
322: Back convert to original type...
322: > Convert vf to itk
322: > Conversion complete.
322: plm_warp_native is complete.
322: Saving image...
322: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha
322: Saving vf...
322: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-vf.mha
322: Load:   0.036633
322: Run:    0.023747
322: Save:   0.051656
322: Total:  0.112036
322: Finished!
322: 
322: STDERR: 
319: Not an error
112/571 Test #319: plm-bsp-mse-k .........................   Passed    0.45 sec
test 339
        Start 339: plm-bsp-mi-k

339: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-k" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
339: Test timeout computed to be: 1500
339: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
339: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k.txt
339: EXPECTED_ERRNO is 
322: Not an error
113/571 Test #322: plm-bsp-mse-l .........................   Passed    0.45 sec
test 342
        Start 342: plm-bsp-gm-k

342: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-gm-k" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
342: Test timeout computed to be: 1500
294: RETVAL: 0
294: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
294: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
294: Launching registration worker thread
294: Inside registration worker thread
294: Doing registration stage
294: [1] xf_in->m_type = 0, xf_out->m_type = 0
294: Fixed image for this stage:
294: Dim = 38 38 38
294: Origin = -25 -25 -25
294: Spacing = 1.31579 1.31579 1.31579
294: Direction Cosines =
294:  1 0 0
294:  0 1 0
294:  0 0 1
294: Moving image for this stage:
294: Dim = 38 38 38
294: Origin = -25 -25 -25
294: Spacing = 1.31579 1.31579 1.31579
294: Direction Cosines =
294:  1 0 0
294:  0 1 0
294:  0 0 1
294: Starting ITK registration
294: StartEvent: 
294: MSE [ 0,  0] 18945.891 [ 0.059 secs]
294: MSE [ 0,  1] 18140.496 [ 0.057 secs]
294: MSE [ 0,  2] 14979.440 [ 0.071 secs]
294: MSE [ 0,  3]  5390.861 [ 0.064 secs]
294: MSE [ 0,  4,319.84]  5390.861  *
294: MSE [ 1,  5]  4259.522 [ 0.111 secs]
294: MSE [ 1,  6,313.58]  4259.522    -1131.34 *
294: MSE [ 2,  7]   465.644 [ 0.075 secs]
294: MSE [ 2,  8,36.78]   465.644    -3793.88 *
294: MSE [ 3,  9]   382.530 [ 0.081 secs]
294: MSE [ 3, 10,21.77]   382.530      -83.11 *
294: MSE [ 4, 11]   289.494 [ 0.083 secs]
294: MSE [ 4, 12,13.35]   289.494      -93.04 *
294: MSE [ 5, 13]   226.103 [ 0.061 secs]
294: MSE [ 5, 14,21.50]   226.103      -63.39 *
294: EndEvent: 
294: Too many iterations. Iterations = 6
294: LBFGSBOptimizer: 
294: ITK registration complete
294: [2] xf_out->m_type = 6, xf_in->m_type = 0
294: ** Registration worker thread finished.
294: Writing transformation ...
294: Warping...
294: plm_warp_itk: xform_to_itk_vf
294: plm_warp_itk: convert_to_itk
294: plm_warp_itk: warping...
294: Saving image...
294: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha
294: Saving vf...
294: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-vf.mha
294: Load:   0.056638
294: Run:    1.04257
294: Save:   0.362294
294: Total:  1.4615
294: Finished!
294: 
294: STDERR: 
342: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
342: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k.txt
342: EXPECTED_ERRNO is 
294: Not an error
114/571 Test #294: plm-reg-itk-bspline ...................   Passed    1.81 sec
test 347
        Start 347: plm-bsp-openmp

347: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-openmp" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-bsp-openmp.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
347: Test timeout computed to be: 1500
347: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
347: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-bsp-openmp.txt
347: EXPECTED_ERRNO is 
333: RETVAL: 0
333: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
333: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha
333: Launching registration worker thread
333: Inside registration worker thread
333: Doing registration stage
333: [1] xf_in->m_type = 0, xf_out->m_type = 0
333: RESAMPLE 1 1: (2 2 2), (2 2 2)
333: RESAMPLE 1 1: (2 2 2), (2 2 2)
333: volume_calc_grad complete.
333: bspline_xform_initialize
333: rdims = (5,5,5)
333: vox_per_rgn = (4,4,4)
333: cdims = (8 8 8)
333: Algorithm flavor = c
333: Threading = 0
333: >> Checking JH allocation
333: >> Performing JH allocation
333: BSPLINE PARMS
333: max_its = 10
333: max_feval = 10
333: BSPLINE XFORM HEADER
333: vox_per_rgn = 4 4 4
333: roi_offset = 0 0 0
333: roi_dim = 19 19 19
333: img_dc = 1 0 0 0 1 0 0 0 1
333: BST METRICS
333: MET 110100 MI 1.000000
333: >> Performing JH initialization
333: Setting nmax, mmax = 1536 41
333: >>> START     
333: This problem is unconstrained.
333: [ 0,  0] MI     -0.4031359 NV   6859 GM     0.148 GN      0.02 [     0.008 s ]
333:          CMIN   0.01 CAVG   0.01 CMAX   0.01
333:          LSD   0.00
333: [ 0,  1] MI     -0.3911095 NV   6859 GM    -0.174 GN    0.0182 [     0.008 s ]
333:          CMIN  -0.26 CAVG   0.01 CMAX   0.05
333:          LSD   1.00
333: [ 0,  2] MI     -0.4031149 NV   6859 GM    -0.183 GN    0.0211 [     0.008 s ]
333:          CMIN  -0.04 CAVG   0.01 CMAX   0.02
333:          LSD   0.18
333: [ 0,  3] MI     -0.4046610 NV   6859 GM    -0.025 GN    0.0104 [     0.008 s ]
333:          CMIN  -0.01 CAVG   0.01 CMAX   0.01
333:          LSD   0.09
333: [ 1,  4] MI     -0.4047489 NV   6859 GM     0.114 GN    0.0175 [     0.008 s ]
333:          CMIN  -0.01 CAVG   0.01 CMAX   0.02
333:          LSD   0.02
333: [ 2,  5] MI     -0.4048453 NV   6859 GM    -0.028 GN    0.0107 [     0.008 s ]
333:          CMIN  -0.01 CAVG   0.01 CMAX   0.02
333:          LSD   0.02
333: [ 3,  6] MI     -0.4049332 NV   6859 GM    -0.040 GN     0.011 [     0.008 s ]
333:          CMIN  -0.01 CAVG   0.01 CMAX   0.02
333:          LSD   0.02
333: [ 4,  7] MI     -0.4051392 NV   6859 GM     0.031 GN    0.0124 [     0.008 s ]
333:          CMIN  -0.03 CAVG   0.01 CMAX   0.04
333:          LSD   0.14
333: [ 5,  8] MI     -0.4052844 NV   6859 GM    -0.024 GN   0.00604 [     0.008 s ]
333:          CMIN  -0.03 CAVG   0.01 CMAX   0.05
333:          LSD   0.04
333: [ 6,  9] MI     -0.4053446 NV   6859 GM    -0.069 GN   0.00892 [     0.008 s ]
333:          CMIN  -0.04 CAVG   0.01 CMAX   0.06
333:          LSD   0.03
333: [ 7, 10] MI     -0.4054493 NV   6859 GM    -0.111 GN    0.0121 [     0.008 s ]
333:          CMIN  -0.04 CAVG   0.01 CMAX   0.07
333:          LSD   0.05
333: [2] xf_out->m_type = 9, xf_in->m_type = 0
333: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
333: bspline_xform_initialize
333: rdims = (5,5,5)
333: vox_per_rgn = (8,8,8)
333: cdims = (8 8 8)
333: ** Registration worker thread finished.
333: Writing transformation ...
333: Warping...
333: Running: plm_warp_native
333: Converting input image...
333: Converting xform...
333: bspline_xform_initialize
333: rdims = (5,5,5)
333: vox_per_rgn = (8,8,8)
333: cdims = (8 8 8)
333: Creating output vf...
333: Creating output volume...
333: Running native warper...
333: bspline_warp complete.
333: Back convert to original type...
333: > Convert vf to itk
333: > Conversion complete.
333: plm_warp_native is complete.
333: Saving image...
333: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha
333: Saving vf...
333: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-vf.mha
333: Load:   0.0353248
333: Run:    0.0956881
333: Save:   0.0429261
333: Total:  0.173939
333: Finished!
333: 
333: STDERR: 
333: Not an error
115/571 Test #333: plm-bsp-mi-c ..........................   Passed    0.53 sec
test 354
        Start 354: plm-bsp-ushort

354: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-ushort" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-bsp-ushort.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
354: Test timeout computed to be: 1500
339: RETVAL: 0
339: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
339: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha
339: Launching registration worker thread
339: Inside registration worker thread
339: Doing registration stage
339: [1] xf_in->m_type = 0, xf_out->m_type = 0
339: RESAMPLE 1 1: (2 2 2), (2 2 2)
339: RESAMPLE 1 1: (2 2 2), (2 2 2)
339: volume_calc_grad complete.
339: bspline_xform_initialize
339: rdims = (5,5,5)
339: vox_per_rgn = (4,4,4)
339: cdims = (8 8 8)
339: Algorithm flavor = k
339: Threading = 0
339: >> Checking JH allocation
339: >> Performing JH allocation
339: BSPLINE PARMS
339: max_its = 10
339: max_feval = 10
339: BSPLINE XFORM HEADER
339: vox_per_rgn = 4 4 4
339: roi_offset = 0 0 0
339: roi_dim = 19 19 19
339: img_dc = 1 0 0 0 1 0 0 0 1
339: BST METRICS
339: MET 110100 MI 1.000000
339: >> Performing JH initialization
339: Setting nmax, mmax = 1536 41
339: >>> START     
339: This problem is unconstrained.
339: [ 0,  0] MI     -0.4031359 NV   6859 GM     0.148 GN      0.02 [     0.007 s ]
339:          CMIN   0.01 CAVG   0.01 CMAX   0.01
339:          LSD   0.00
339: [ 0,  1] MI     -0.3911095 NV   6859 GM    -0.174 GN    0.0182 [     0.007 s ]
339:          CMIN  -0.26 CAVG   0.01 CMAX   0.05
339:          LSD   1.00
339: [ 0,  2] MI     -0.4031149 NV   6859 GM    -0.183 GN    0.0211 [     0.007 s ]
339:          CMIN  -0.04 CAVG   0.01 CMAX   0.02
339:          LSD   0.18
339: [ 0,  3] MI     -0.4046610 NV   6859 GM    -0.025 GN    0.0104 [     0.007 s ]
339:          CMIN  -0.01 CAVG   0.01 CMAX   0.01
339:          LSD   0.09
339: [ 1,  4] MI     -0.4047489 NV   6859 GM     0.114 GN    0.0175 [     0.007 s ]
339:          CMIN  -0.01 CAVG   0.01 CMAX   0.02
339:          LSD   0.02
339: [ 2,  5] MI     -0.4048453 NV   6859 GM    -0.028 GN    0.0107 [     0.007 s ]
339:          CMIN  -0.01 CAVG   0.01 CMAX   0.02
339:          LSD   0.02
339: [ 3,  6] MI     -0.4049332 NV   6859 GM    -0.040 GN     0.011 [     0.007 s ]
339:          CMIN  -0.01 CAVG   0.01 CMAX   0.02
339:          LSD   0.02
339: [ 4,  7] MI     -0.4051392 NV   6859 GM     0.031 GN    0.0124 [     0.007 s ]
339:          CMIN  -0.03 CAVG   0.01 CMAX   0.04
339:          LSD   0.14
339: [ 5,  8] MI     -0.4052844 NV   6859 GM    -0.024 GN   0.00604 [     0.007 s ]
339:          CMIN  -0.03 CAVG   0.01 CMAX   0.05
339:          LSD   0.04
339: [ 6,  9] MI     -0.4053446 NV   6859 GM    -0.069 GN   0.00892 [     0.007 s ]
339:          CMIN  -0.04 CAVG   0.01 CMAX   0.06
339:          LSD   0.03
339: [ 7, 10] MI     -0.4054493 NV   6859 GM    -0.111 GN    0.0121 [     0.007 s ]
339:          CMIN  -0.04 CAVG   0.01 CMAX   0.07
339:          LSD   0.05
339: [2] xf_out->m_type = 9, xf_in->m_type = 0
339: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
339: bspline_xform_initialize
339: rdims = (5,5,5)
339: vox_per_rgn = (8,8,8)
339: cdims = (8 8 8)
339: ** Registration worker thread finished.
339: Writing transformation ...
339: Warping...
339: Running: plm_warp_native
339: Converting input image...
339: Converting xform...
339: bspline_xform_initialize
339: rdims = (5,5,5)
339: vox_per_rgn = (8,8,8)
339: cdims = (8 8 8)
339: Creating output vf...
339: Creating output volume...
339: Running native warper...
339: bspline_warp complete.
339: Back convert to original type...
339: > Convert vf to itk
339: > Conversion complete.
339: plm_warp_native is complete.
339: Saving image...
339: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha
339: Saving vf...
339: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-vf.mha
339: Load:   0.0354378
339: Run:    0.083266
339: Save:   0.050776
339: Total:  0.16948
339: Finished!
339: 
339: STDERR: 
354: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
354: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-bsp-ushort.txt
354: EXPECTED_ERRNO is 
339: Not an error
342: RETVAL: 0
342: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
342: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha
342: Launching registration worker thread
342: Inside registration worker thread
342: Doing registration stage
342: [1] xf_in->m_type = 0, xf_out->m_type = 0
342: RESAMPLE 1 1: (2 2 2), (2 2 2)
342: RESAMPLE 1 1: (2 2 2), (2 2 2)
342: volume_calc_grad_mag complete.
342: volume_calc_grad_mag complete.
342: volume_calc_grad complete.
342: bspline_xform_initialize
342: rdims = (5,5,5)
342: vox_per_rgn = (4,4,4)
342: cdims = (8 8 8)
342: Algorithm flavor = k
342: Threading = 0
342: >> Checking JH allocation
342: BSPLINE PARMS
342: max_its = 20
342: max_feval = 20
342: BSPLINE XFORM HEADER
342: vox_per_rgn = 4 4 4
342: roi_offset = 0 0 0
342: roi_dim = 19 19 19
342: img_dc = 1 0 0 0 1 0 0 0 1
342: BST METRICS
342: MET 110100 GM 1.000000
342: Setting nmax, mmax = 1536 41
342: >>> START     
342: This problem is unconstrained.
342: [ 0,  0] GM       172.628 NV   6859 GM   -29.170 GN       4.3 [     0.003 s ]
342:          CMIN   0.00 CAVG   0.00 CMAX   0.00
342:          LSD   0.00
342: [ 0,  1] GM       167.918 NV   6859 GM   -28.658 GN      4.22 [     0.003 s ]
342:          CMIN  -0.13 CAVG   0.00 CMAX   0.22
342:          LSD   1.00
342: [ 0,  2] GM       149.959 NV   6859 GM   -26.618 GN      3.91 [     0.003 s ]
342:          CMIN  -0.66 CAVG   0.02 CMAX   1.08
342:          LSD   5.00
342: [ 0,  3] GM        86.734 NV   6751 GM   -21.624 GN      3.16 [     0.006 s ]
342:          CMIN  -2.76 CAVG   0.09 CMAX   4.52
342:          LSD  21.00
342: [ 1,  4] GM        45.340 NV   6066 GM    12.985 GN      2.28 [     0.005 s ]
342:          CMIN  -8.79 CAVG   0.42 CMAX  26.13
342:          LSD  77.01
342: [ 2,  5] GM     7.1179175 NV   6185 GM    -1.370 GN     0.385 [     0.003 s ]
342:          CMIN  -7.46 CAVG   0.30 CMAX  17.43
342:          LSD  31.38
342: [ 3,  6] GM     5.8718486 NV   6215 GM    -1.061 GN     0.253 [     0.003 s ]
342:          CMIN  -7.26 CAVG   0.31 CMAX  16.96
342:          LSD   4.23
342: [ 4,  7] GM     4.1875200 NV   6252 GM    -0.481 GN     0.302 [     0.003 s ]
342:          CMIN  -7.17 CAVG   0.33 CMAX  15.50
342:          LSD   8.87
342: [ 5,  8] GM     2.5404434 NV   6268 GM     0.199 GN     0.327 [     0.003 s ]
342:          CMIN  -7.33 CAVG   0.37 CMAX  12.64
342:          LSD  13.58
342: [ 6,  9] GM     1.5809063 NV   6272 GM     0.253 GN     0.261 [     0.003 s ]
342:          CMIN  -7.57 CAVG   0.41 CMAX  16.21
342:          LSD  17.78
342: [ 7, 10] GM     1.2611113 NV   6186 GM    -0.858 GN     0.254 [     0.003 s ]
342:          CMIN  -8.47 CAVG   0.41 CMAX  17.69
342:          LSD   6.01
342: [ 8, 11] GM     0.8998204 NV   6202 GM    -0.272 GN    0.0629 [     0.003 s ]
342:          CMIN  -8.10 CAVG   0.41 CMAX  16.37
342:          LSD   4.02
342: [ 9, 12] GM     0.8851209 NV   6200 GM    -0.119 GN    0.0425 [     0.003 s ]
342:          CMIN  -8.11 CAVG   0.41 CMAX  16.43
342:          LSD   1.40
342: [10, 13] GM     0.8340189 NV   6185 GM    -0.041 GN    0.0494 [     0.003 s ]
342:          CMIN  -8.22 CAVG   0.42 CMAX  16.47
342:          LSD   2.71
342: [11, 14] GM     0.7303342 NV   6158 GM     0.209 GN    0.0438 [     0.003 s ]
342:          CMIN  -8.31 CAVG   0.43 CMAX  16.15
342:          LSD   3.16
342: [12, 15] GM     0.6365445 NV   6149 GM    -0.660 GN     0.078 [     0.017 s ]
342:          CMIN  -8.30 CAVG   0.43 CMAX  15.18
342:          LSD   6.07
342: [13, 16] GM     0.5679634 NV   6142 GM     0.051 GN    0.0445 [     0.003 s ]
342:          CMIN  -8.24 CAVG   0.45 CMAX  14.83
342:          LSD   4.36
342: [14, 17] GM     0.4986858 NV   6140 GM     0.219 GN    0.0371 [     0.003 s ]
342:          CMIN  -8.07 CAVG   0.45 CMAX  14.65
342:          LSD   3.34
342: [15, 18] GM     0.4631230 NV   6160 GM     0.148 GN    0.0299 [     0.003 s ]
342:          CMIN  -7.80 CAVG   0.46 CMAX  14.76
342:          LSD   4.03
342: [16, 19] GM     0.4685278 NV   6160 GM     0.115 GN    0.0395 [     0.003 s ]
342:          CMIN  -7.51 CAVG   0.46 CMAX  15.22
342:          LSD   3.59
342: [16, 20] GM     0.4544649 NV   6161 GM     0.152 GN     0.026 [     0.003 s ]
342:          CMIN  -7.71 CAVG   0.46 CMAX  14.89
342:          LSD   1.09
342: [2] xf_out->m_type = 9, xf_in->m_type = 0
342: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
342: bspline_xform_initialize
342: rdims = (5,5,5)
342: vox_per_rgn = (8,8,8)
342: cdims = (8 8 8)
342: ** Registration worker thread finished.
342: Writing transformation ...
342: Warping...
342: Running: plm_warp_native
342: Converting input image...
342: Converting xform...
342: bspline_xform_initialize
342: rdims = (5,5,5)
342: vox_per_rgn = (8,8,8)
342: cdims = (8 8 8)
342: Creating output vf...
342: Creating output volume...
342: Running native warper...
342: bspline_warp complete.
342: Back convert to original type...
342: > Convert vf to itk
342: > Conversion complete.
342: plm_warp_native is complete.
342: Saving image...
342: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha
342: Saving vf...
342: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-vf.mha
342: Load:   0.0454259
342: Run:    0.0884888
342: Save:   0.0570369
342: Total:  0.190952
342: Finished!
342: 
342: STDERR: 
116/571 Test #339: plm-bsp-mi-k ..........................   Passed    0.46 sec
test 357
        Start 357: plm-bsp-double

357: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-double" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
357: Test timeout computed to be: 1500
357: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
357: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double.txt
357: EXPECTED_ERRNO is 
342: Not an error
117/571 Test #342: plm-bsp-gm-k ..........................   Passed    0.62 sec
test 361
        Start 361: plm-bsp-char-output

361: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-char-output" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-bsp-char-output.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
361: Test timeout computed to be: 1500
347: RETVAL: 0
347: STDOUT: Loading fixed image [0]: gauss-1.mha
347: Loading moving image [0]: gauss-2.mha
347: Launching registration worker thread
347: Inside registration worker thread
347: Doing registration stage
347: [1] xf_in->m_type = 0, xf_out->m_type = 0
347: RESAMPLE 1 1: (2 2 2), (2 2 2)
347: RESAMPLE 1 1: (2 2 2), (2 2 2)
347: volume_calc_grad complete.
347: bspline_xform_initialize
347: rdims = (2,2,2)
347: vox_per_rgn = (11,11,11)
347: cdims = (5 5 5)
347: Algorithm flavor = g
347: Threading = 0
347: >> Checking JH allocation
347: BSPLINE PARMS
347: max_its = 5
347: max_feval = 5
347: BSPLINE XFORM HEADER
347: vox_per_rgn = 11 11 11
347: roi_offset = 0 0 0
347: roi_dim = 19 19 19
347: img_dc = 1 0 0 0 1 0 0 0 1
347: BST METRICS
347: MET 110100 MSE 1.000000
347: Setting nmax, mmax = 375 21
347: >>> START     
347: This problem is unconstrained.
347: [ 0,  0] MSE    18756.236 NV   6859 GM -2980.067 GN       852 [     0.016 s ]
347:          CMIN   0.00 CAVG   0.00 CMAX   0.00
347:          LSD   0.00
347: [ 0,  1] MSE    17838.633 NV   6859 GM -2882.393 GN       824 [     0.008 s ]
347:          CMIN  -0.07 CAVG   0.01 CMAX   0.68
347:          LSD   1.00
347: [ 0,  2] MSE    14464.859 NV   6858 GM -2822.149 GN       824 [     0.008 s ]
347:          CMIN  -0.35 CAVG   0.05 CMAX   3.40
347:          LSD   5.00
347: [ 0,  3] MSE     3829.066 NV   6286 GM -1585.570 GN       459 [     0.007 s ]
347:          CMIN  -1.48 CAVG   0.20 CMAX  14.26
347:          LSD  21.00
347: [ 1,  4] MSE     3098.538 NV   5455 GM  1176.092 GN       399 [     0.006 s ]
347:          CMIN  -1.74 CAVG   0.44 CMAX  32.50
347:          LSD  27.95
347: [ 2,  5] MSE      282.038 NV   5851 GM    54.495 GN      43.4 [     0.007 s ]
347:          CMIN  -1.73 CAVG   0.34 CMAX  23.99
347:          LSD  13.11
347: [2] xf_out->m_type = 9, xf_in->m_type = 0
347: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
347: bspline_xform_initialize
347: rdims = (2,2,2)
347: vox_per_rgn = (22,22,22)
347: cdims = (5 5 5)
347: ** Registration worker thread finished.
347: Writing transformation ...
347: Warping...
347: Running: plm_warp_native
347: Converting input image...
347: Converting xform...
347: bspline_xform_initialize
347: rdims = (2,2,2)
347: vox_per_rgn = (22,22,22)
347: cdims = (5 5 5)
347: Creating output vf...
347: Creating output volume...
347: Running native warper...
347: bspline_warp complete.
347: Back convert to original type...
347: > Convert vf to itk
347: > Conversion complete.
347: plm_warp_native is complete.
347: Saving image...
347: Trying to write image to plm-bsp-openmp-img.mha
347: Saving vf...
347: Trying to write image to plm-bsp-openmp-vf.mha
347: Load:   0.0749571
347: Run:    0.064368
347: Save:   0.052016
347: Total:  0.191341
347: Finished!
347: 
347: STDERR: 
354: RETVAL: 0
354: STDOUT: Loading fixed image [0]: gauss-ushort-1.mha
354: Loading moving image [0]: gauss-ushort-2.mha
354: Launching registration worker thread
354: Inside registration worker thread
354: Doing registration stage
354: [1] xf_in->m_type = 0, xf_out->m_type = 0
354: RESAMPLE 1 1: (2 2 2), (2 2 2)
354: RESAMPLE 1 1: (2 2 2), (2 2 2)
354: volume_calc_grad complete.
354: bspline_xform_initialize
354: rdims = (2,2,2)
354: vox_per_rgn = (11,11,11)
354: cdims = (5 5 5)
354: Algorithm flavor = h
354: Threading = 0
354: >> Checking JH allocation
354: BSPLINE PARMS
354: max_its = 5
354: max_feval = 5
354: BSPLINE XFORM HEADER
354: vox_per_rgn = 11 11 11
354: roi_offset = 0 0 0
354: roi_dim = 19 19 19
354: img_dc = 1 0 0 0 1 0 0 0 1
354: BST METRICS
354: MET 110100 MSE 1.000000
354: Setting nmax, mmax = 375 21
354: >>> START     
354: This problem is unconstrained.
354: [ 0,  0] MSE    18754.957 NV   6859 GM -2979.950 GN       852 [     0.004 s ]
354:          CMIN   0.00 CAVG   0.00 CMAX   0.00
354:          LSD   0.00
354: [ 0,  1] MSE    17837.379 NV   6859 GM -2882.285 GN       824 [     0.004 s ]
354:          CMIN  -0.07 CAVG   0.01 CMAX   0.68
354:          LSD   1.00
354: [ 0,  2] MSE    14463.688 NV   6858 GM -2822.063 GN       824 [     0.004 s ]
354:          CMIN  -0.35 CAVG   0.05 CMAX   3.40
354:          LSD   5.00
354: [ 0,  3] MSE     3828.428 NV   6286 GM -1585.519 GN       459 [     0.004 s ]
354:          CMIN  -1.48 CAVG   0.20 CMAX  14.26
354:          LSD  21.00
354: [ 1,  4] MSE     3098.900 NV   5455 GM  1176.149 GN       399 [     0.003 s ]
354:          CMIN  -1.74 CAVG   0.44 CMAX  32.50
354:          LSD  27.95
354: [ 2,  5] MSE      281.899 NV   5851 GM    54.406 GN      43.4 [     0.004 s ]
354:          CMIN  -1.73 CAVG   0.34 CMAX  23.98
354:          LSD  13.11
354: [2] xf_out->m_type = 9, xf_in->m_type = 0
354: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
354: bspline_xform_initialize
354: rdims = (2,2,2)
354: vox_per_rgn = (22,22,22)
354: cdims = (5 5 5)
354: ** Registration worker thread finished.
354: Writing transformation ...
354: Warping...
354: Running: plm_warp_native
354: Converting input image...
354: Converting xform...
354: bspline_xform_initialize
354: rdims = (2,2,2)
354: vox_per_rgn = (22,22,22)
354: cdims = (5 5 5)
354: Creating output vf...
354: Creating output volume...
354: Running native warper...
354: bspline_warp complete.
354: Back convert to original type...
354: > Convert vf to itk
354: > Conversion complete.
354: plm_warp_native is complete.
354: Saving image...
354: Trying to write image to plm-bsp-ushort-img.mha
354: Saving vf...
354: Trying to write image to plm-bsp-ushort-vf.mha
354: Load:   0.047868
354: Run:    0.0312519
354: Save:   0.033525
354: Total:  0.112645
354: Finished!
354: 
354: STDERR: 
361: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
361: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-bsp-char-output.txt
361: EXPECTED_ERRNO is 
354: Not an error
118/571 Test #354: plm-bsp-ushort ........................   Passed    0.44 sec
test 365
        Start 365: plm-bsp-regularize-none

365: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-none" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
365: Test timeout computed to be: 1500
347: Not an error
119/571 Test #347: plm-bsp-openmp ........................   Passed    0.63 sec
test 368
        Start 368: plm-bsp-regularize-analytic

368: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-analytic" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
368: Test timeout computed to be: 1500
365: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
365: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none.txt
365: EXPECTED_ERRNO is 
368: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
368: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic.txt
368: EXPECTED_ERRNO is 
357: RETVAL: 0
357: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha
357: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha
357: Launching registration worker thread
357: Inside registration worker thread
357: Doing registration stage
357: [1] xf_in->m_type = 0, xf_out->m_type = 0
357: RESAMPLE 1 1: (2 2 2), (2 2 2)
357: RESAMPLE 1 1: (2 2 2), (2 2 2)
357: volume_calc_grad complete.
357: bspline_xform_initialize
357: rdims = (2,2,2)
357: vox_per_rgn = (11,11,11)
357: cdims = (5 5 5)
357: Algorithm flavor = h
357: Threading = 0
357: >> Checking JH allocation
357: BSPLINE PARMS
357: max_its = 5
357: max_feval = 5
357: BSPLINE XFORM HEADER
357: vox_per_rgn = 11 11 11
357: roi_offset = 0 0 0
357: roi_dim = 19 19 19
357: img_dc = 1 0 0 0 1 0 0 0 1
357: BST METRICS
357: MET 110100 MSE 1.000000
357: Setting nmax, mmax = 375 21
357: >>> START     
357: This problem is unconstrained.
357: [ 0,  0] MSE    18756.236 NV   6859 GM -2980.067 GN       852 [     0.003 s ]
357:          CMIN   0.00 CAVG   0.00 CMAX   0.00
357:          LSD   0.00
357: [ 0,  1] MSE    17838.633 NV   6859 GM -2882.393 GN       824 [     0.003 s ]
357:          CMIN  -0.07 CAVG   0.01 CMAX   0.68
357:          LSD   1.00
357: [ 0,  2] MSE    14464.859 NV   6858 GM -2822.149 GN       824 [     0.003 s ]
357:          CMIN  -0.35 CAVG   0.05 CMAX   3.40
357:          LSD   5.00
357: [ 0,  3] MSE     3829.066 NV   6286 GM -1585.570 GN       459 [     0.003 s ]
357:          CMIN  -1.48 CAVG   0.20 CMAX  14.26
357:          LSD  21.00
357: [ 1,  4] MSE     3098.536 NV   5455 GM  1176.092 GN       399 [     0.002 s ]
357:          CMIN  -1.74 CAVG   0.44 CMAX  32.50
357:          LSD  27.95
357: [ 2,  5] MSE      282.038 NV   5851 GM    54.495 GN      43.4 [     0.002 s ]
357:          CMIN  -1.73 CAVG   0.34 CMAX  23.99
357:          LSD  13.11
357: [2] xf_out->m_type = 9, xf_in->m_type = 0
357: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
357: bspline_xform_initialize
357: rdims = (2,2,2)
357: vox_per_rgn = (22,22,22)
357: cdims = (5 5 5)
357: ** Registration worker thread finished.
357: Writing transformation ...
357: Warping...
357: Running: plm_warp_native
357: Converting input image...
357: Converting xform...
357: bspline_xform_initialize
357: rdims = (2,2,2)
357: vox_per_rgn = (22,22,22)
357: cdims = (5 5 5)
357: Creating output vf...
357: Creating output volume...
357: Running native warper...
357: bspline_warp complete.
357: Back convert to original type...
357: > Convert vf to itk
357: > Conversion complete.
357: plm_warp_native is complete.
357: Saving image...
357: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha
357: Saving vf...
357: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-vf.mha
357: Load:   0.062422
357: Run:    0.022599
357: Save:   0.056627
357: Total:  0.141648
357: Finished!
357: 
357: STDERR: 
361: RETVAL: 0
361: STDOUT: Loading fixed image [0]: rect-2.mha
361: Loading moving image [0]: rect-3.mha
361: Launching registration worker thread
361: Inside registration worker thread
361: Doing registration stage
361: [1] xf_in->m_type = 0, xf_out->m_type = 0
361: RESAMPLE 1 1: (2 2 2), (2 2 2)
361: RESAMPLE 1 1: (2 2 2), (2 2 2)
361: volume_calc_grad complete.
361: bspline_xform_initialize
361: Warning: vox_per_rgn was less than 4.
361: Warning: vox_per_rgn was less than 4.
361: Warning: vox_per_rgn was less than 4.
361: rdims = (5,5,5)
361: vox_per_rgn = (4,4,4)
361: cdims = (8 8 8)
361: Algorithm flavor = h
361: Threading = 0
361: >> Checking JH allocation
361: BSPLINE PARMS
361: max_its = 5
361: max_feval = 5
361: BSPLINE XFORM HEADER
361: vox_per_rgn = 4 4 4
361: roi_offset = 0 0 0
361: roi_dim = 19 19 19
361: img_dc = 1 0 0 0 1 0 0 0 1
361: BST METRICS
361: MET 110100 MSE 1.000000
361: Setting nmax, mmax = 1536 41
361: >>> START     
361: This problem is unconstrained.
361: [ 0,  0] MSE     1339.481 NV   6859 GM    84.834 GN      23.1 [     0.003 s ]
361:          CMIN   0.00 CAVG   0.00 CMAX   0.00
361:          LSD   0.00
361: [ 0,  1] MSE     1311.345 NV   6859 GM    83.820 GN      22.8 [     0.003 s ]
361:          CMIN  -0.60 CAVG  -0.00 CMAX   0.08
361:          LSD   1.00
361: [ 0,  2] MSE     1202.580 NV   6859 GM    79.773 GN      21.8 [     0.003 s ]
361:          CMIN  -2.99 CAVG  -0.01 CMAX   0.42
361:          LSD   5.00
361: [ 0,  3] MSE      827.300 NV   6859 GM    63.686 GN      17.5 [     0.003 s ]
361:          CMIN -12.56 CAVG  -0.05 CMAX   1.74
361:          LSD  21.00
361: [ 1,  4] MSE      213.043 NV   6859 GM   -16.873 GN      5.84 [     0.003 s ]
361:          CMIN -54.37 CAVG  -0.20 CMAX   6.52
361:          LSD  67.10
361: [ 2,  5] MSE      175.936 NV   6859 GM    -0.450 GN      2.34 [     0.003 s ]
361:          CMIN -51.91 CAVG  -0.18 CMAX   5.91
361:          LSD  13.48
361: [2] xf_out->m_type = 9, xf_in->m_type = 0
361: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
361: bspline_xform_initialize
361: rdims = (5,5,5)
361: vox_per_rgn = (8,8,8)
361: cdims = (8 8 8)
361: ** Registration worker thread finished.
361: Warping...
361: Running: plm_warp_native
361: Converting input image...
361: Converting xform...
361: bspline_xform_initialize
361: rdims = (5,5,5)
361: vox_per_rgn = (8,8,8)
361: cdims = (8 8 8)
361: Creating output volume...
361: Running native warper...
361: bspline_warp complete.
361: Back convert to original type...
361: plm_warp_native is complete.
361: Saving image...
361: Trying to write image to plm-bsp-char-output.mha
361: Load:   0.043298
361: Run:    0.0546579
361: Save:   0.028738
361: Total:  0.126694
361: Finished!
361: 
361: STDERR: 
357: Not an error
120/571 Test #357: plm-bsp-double ........................   Passed    0.55 sec
test 371
        Start 371: plm-bsp-regularize-numeric

371: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-numeric" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
371: Test timeout computed to be: 1500
361: Not an error
371: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
371: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric.txt
371: EXPECTED_ERRNO is 
121/571 Test #361: plm-bsp-char-output ...................   Passed    0.40 sec
test 375
        Start 375: plm-bsp-landmark-b

375: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
375: Test timeout computed to be: 1500
375: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
375: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b.txt
375: EXPECTED_ERRNO is 
365: RETVAL: 0
365: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha
365: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha
365: Launching registration worker thread
365: Inside registration worker thread
365: Doing registration stage
365: [1] xf_in->m_type = 0, xf_out->m_type = 0
365: RESAMPLE 1 1: (1 1 1), (1 1 1)
365: RESAMPLE 1 1: (1 1 1), (1 1 1)
365: volume_calc_grad complete.
365: bspline_xform_initialize
365: Warning: vox_per_rgn was less than 4.
365: Warning: vox_per_rgn was less than 4.
365: Warning: vox_per_rgn was less than 4.
365: rdims = (10,10,10)
365: vox_per_rgn = (4,4,4)
365: cdims = (13 13 13)
365: Algorithm flavor = g
365: Threading = 0
365: >> Checking JH allocation
365: BSPLINE PARMS
365: max_its = 5
365: max_feval = 5
365: BSPLINE XFORM HEADER
365: vox_per_rgn = 4 4 4
365: roi_offset = 0 0 0
365: roi_dim = 38 38 38
365: img_dc = 1 0 0 0 1 0 0 0 1
365: BST METRICS
365: MET 110100 MSE 1.000000
365: Setting nmax, mmax = 6591 83
365: >>> START     
365: This problem is unconstrained.
365: [ 0,  0] MSE     5540.166 NV  54872 GM     0.000 GN      28.2 [     0.048 s ]
365:          CMIN   0.00 CAVG   0.00 CMAX   0.00
365:          LSD   0.00
365: [ 0,  1] MSE     5484.124 NV  54872 GM     0.045 GN      27.8 [     0.027 s ]
365:          CMIN  -0.16 CAVG  -0.00 CMAX   0.22
365:          LSD   1.00
365: [ 0,  2] MSE     5266.236 NV  54872 GM     0.224 GN      26.4 [     0.025 s ]
365:          CMIN  -0.81 CAVG   0.00 CMAX   1.12
365:          LSD   5.00
365: [ 0,  3] MSE     4484.536 NV  54872 GM     0.928 GN      20.9 [     0.026 s ]
365:          CMIN  -3.39 CAVG   0.00 CMAX   4.70
365:          LSD  21.00
365: [ 1,  4] MSE     2493.238 NV  54872 GM     0.677 GN      15.1 [     0.017 s ]
365:          CMIN -13.49 CAVG  -0.00 CMAX  18.05
365:          LSD  60.54
365: [ 2,  5] MSE     4765.919 NV  54872 GM    81.679 GN      34.3 [     0.018 s ]
365:          CMIN -43.65 CAVG  -0.01 CMAX  57.84
365:          LSD 218.24
365: [2] xf_out->m_type = 9, xf_in->m_type = 0
365: ** Registration worker thread finished.
365: Writing transformation ...
365: Warping...
365: Running: plm_warp_native
365: Converting input image...
365: Converting xform...
365: bspline_xform_initialize
365: rdims = (10,10,10)
365: vox_per_rgn = (4,4,4)
365: cdims = (13 13 13)
365: Creating output vf...
365: Creating output volume...
365: Running native warper...
365: bspline_warp complete.
365: Back convert to original type...
365: > Convert vf to itk
365: > Conversion complete.
365: plm_warp_native is complete.
365: Saving image...
365: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-img.mha
365: Saving vf...
365: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha
365: Load:   0.100254
365: Run:    0.212287
365: Save:   0.086735
365: Total:  0.399276
365: Finished!
365: 
365: STDERR: 
365: Not an error
122/571 Test #365: plm-bsp-regularize-none ...............   Passed    0.78 sec
test 378
        Start 378: plm-bsp-landmark-c

378: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
378: Test timeout computed to be: 1500
375: RETVAL: 0
375: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha
375: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha
375: Loading fixed landmarks: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-3.fcsv
375: Loading moving landmarks: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv
375: Launching registration worker thread
375: Inside registration worker thread
375: Doing registration stage
375: [1] xf_in->m_type = 0, xf_out->m_type = 0
375: RESAMPLE 1 1: (2 2 2), (2 2 2)
375: RESAMPLE 1 1: (2 2 2), (2 2 2)
375: volume_calc_grad complete.
375: bspline_xform_initialize
375: Warning: vox_per_rgn was less than 4.
375: Warning: vox_per_rgn was less than 4.
375: Warning: vox_per_rgn was less than 4.
375: rdims = (5,5,5)
375: vox_per_rgn = (4,4,4)
375: cdims = (8 8 8)
375: Algorithm flavor = h
375: Threading = 0
375: Landmarks: 8 fixed, 8 moving, lambda = 1.000000
375: >> Checking JH allocation
375: Computing landmark grid coordinates
375: image dc=-1 0 0 0 -1 0 0 0 1
375: image or=250 250 -236.842
375: image dm=19 19 19
375: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000)
375: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008)
375: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008)
375: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008)
375: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000)
375: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981)
375: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981)
375: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981)
375: BSPLINE PARMS
375: max_its = 5
375: max_feval = 5
375: BSPLINE XFORM HEADER
375: vox_per_rgn = 4 4 4
375: roi_offset = 0 0 0
375: roi_dim = 19 19 19
375: img_dc = -1 0 0 0 -1 0 0 0 1
375: BST METRICS
375: MET 110100 MSE 1.000000
375: Setting nmax, mmax = 1536 41
375: >>> START     
375: This problem is unconstrained.
375: [ 0,  0] SCORE   1785.722 NV   6859 GM  -104.585 GN      27.6 [     0.005 s ]
375:          MSE     1339.480 LM   446.242 
375:          CMIN   0.00 CAVG   0.00 CMAX   0.00
375:          LSD   0.00
375: [ 0,  1] SCORE   1740.786 NV   6859 GM  -103.163 GN      27.2 [     0.007 s ]
375:          MSE     1303.402 LM   437.384 
375:          CMIN  -0.03 CAVG   0.00 CMAX   0.57
375:          LSD   1.00
375: [ 0,  2] SCORE   1567.600 NV   6859 GM   -97.477 GN      25.7 [     0.005 s ]
375:          MSE     1164.662 LM   402.938 
375:          CMIN  -0.17 CAVG   0.01 CMAX   2.86
375:          LSD   5.00
375: [ 0,  3] SCORE    979.240 NV   6859 GM   -74.784 GN      19.7 [     0.015 s ]
375:          MSE      698.326 LM   280.914 
375:          CMIN  -0.71 CAVG   0.05 CMAX  12.03
375:          LSD  21.00
375: [ 1,  4] SCORE    118.835 NV   6859 GM     0.596 GN      3.68 [     0.005 s ]
375:          MSE       81.402 LM    37.433 
375:          CMIN  -1.76 CAVG   0.19 CMAX  39.56
375:          LSD  55.80
375: [ 2,  5] SCORE     69.736 NV   6859 GM     2.657 GN      2.64 [     0.005 s ]
375:          MSE       47.343 LM    22.393 
375:          CMIN  -3.07 CAVG   0.19 CMAX  44.32
375:          LSD  10.82
375: [2] xf_out->m_type = 9, xf_in->m_type = 0
375: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
375: bspline_xform_initialize
375: rdims = (5,5,5)
375: vox_per_rgn = (8,8,8)
375: cdims = (8 8 8)
375: ** Registration worker thread finished.
375: Writing transformation ...
375: Warping...
375: Running: plm_warp_native
375: Converting input image...
375: Converting xform...
375: bspline_xform_initialize
375: rdims = (5,5,5)
375: vox_per_rgn = (8,8,8)
375: cdims = (8 8 8)
375: Creating output vf...
375: Creating output volume...
375: Running native warper...
375: bspline_warp complete.
375: Back convert to original type...
375: > Convert vf to itk
375: > Conversion complete.
375: plm_warp_native is complete.
375: Saving image...
375: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha
375: Saving warped landmarks...
375: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-warped.fcsv
375: Saving vf...
375: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-vf.mha
375: Load:   0.108309
375: Run:    0.112152
375: Save:   0.062259
375: Total:  0.28272
375: Finished!
375: 
375: STDERR: 
378: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
378: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c.txt
378: EXPECTED_ERRNO is 
375: Not an error
123/571 Test #375: plm-bsp-landmark-b ....................   Passed    0.65 sec
test 381
        Start 381: plm-bsp-landmark-d

381: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
381: Test timeout computed to be: 1500
381: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
381: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d.txt
381: EXPECTED_ERRNO is 
368: RETVAL: 0
368: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha
368: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha
368: Launching registration worker thread
368: Inside registration worker thread
368: Doing registration stage
368: [1] xf_in->m_type = 0, xf_out->m_type = 0
368: RESAMPLE 1 1: (1 1 1), (1 1 1)
368: RESAMPLE 1 1: (1 1 1), (1 1 1)
368: volume_calc_grad complete.
368: bspline_xform_initialize
368: Warning: vox_per_rgn was less than 4.
368: Warning: vox_per_rgn was less than 4.
368: Warning: vox_per_rgn was less than 4.
368: rdims = (10,10,10)
368: vox_per_rgn = (4,4,4)
368: cdims = (13 13 13)
368: Algorithm flavor = g
368: Threading = 0
368: Regularization: flavor = c lambda = 1.000000
368: Regularizer initialized
368: >> Checking JH allocation
368: BSPLINE PARMS
368: max_its = 5
368: max_feval = 5
368: BSPLINE XFORM HEADER
368: vox_per_rgn = 4 4 4
368: roi_offset = 0 0 0
368: roi_dim = 38 38 38
368: img_dc = 1 0 0 0 1 0 0 0 1
368: BST METRICS
368: MET 110100 MSE 1.000000
368: Setting nmax, mmax = 6591 83
368: >>> START     
368: This problem is unconstrained.
368: [ 0,  0] SCORE   5540.166 NV  54872 GM     0.000 GN      28.2 [     0.117 s ]
368:          MSE     5540.166 RM     0.000 [     0.017 |     0.099 ]
368:          CMIN   0.00 CAVG   0.00 CMAX   0.00
368:          LSD   0.00
368: [ 0,  1] SCORE   5484.176 NV  54872 GM     0.045 GN      27.7 [     0.140 s ]
368:          MSE     5484.124 RM     0.052 [     0.015 |     0.125 ]
368:          CMIN  -0.16 CAVG  -0.00 CMAX   0.22
368:          LSD   1.00
368: [ 0,  2] SCORE   5267.543 NV  54872 GM     0.224 GN      25.9 [     0.102 s ]
368:          MSE     5266.236 RM     1.307 [     0.020 |     0.082 ]
368:          CMIN  -0.81 CAVG   0.00 CMAX   1.12
368:          LSD   5.00
368: [ 0,  3] SCORE   4507.597 NV  54872 GM     0.928 GN      18.7 [     0.152 s ]
368:          MSE     4484.536 RM    23.060 [     0.034 |     0.118 ]
368:          CMIN  -3.39 CAVG   0.00 CMAX   4.70
368:          LSD  21.00
368: [ 1,  4] SCORE   3149.129 NV  54872 GM     4.968 GN      2.36 [     0.099 s ]
368:          MSE     2955.678 RM   193.451 [     0.014 |     0.084 ]
368:          CMIN -10.06 CAVG  -0.00 CMAX  13.65
368:          LSD  42.53
368: [ 2,  5] SCORE   3079.150 NV  54872 GM    -1.061 GN      2.72 [     0.066 s ]
368:          MSE     2880.344 RM   198.806 [     0.009 |     0.058 ]
368:          CMIN -10.75 CAVG  -0.00 CMAX  13.43
368:          LSD   6.23
368: [2] xf_out->m_type = 9, xf_in->m_type = 0
368: ** Registration worker thread finished.
368: Writing transformation ...
368: Warping...
368: Running: plm_warp_native
368: Converting input image...
368: Converting xform...
368: bspline_xform_initialize
368: rdims = (10,10,10)
368: vox_per_rgn = (4,4,4)
368: cdims = (13 13 13)
368: Creating output vf...
368: Creating output volume...
368: Running native warper...
368: bspline_warp complete.
368: Back convert to original type...
368: > Convert vf to itk
368: > Conversion complete.
368: plm_warp_native is complete.
368: Saving image...
368: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-img.mha
368: Saving vf...
368: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha
368: Load:   0.0335011
368: Run:    0.68483
368: Save:   0.0759761
368: Total:  0.794307
368: Finished!
368: 
368: STDERR: 
368: Not an error
124/571 Test #368: plm-bsp-regularize-analytic ...........   Passed    1.14 sec
test 384
        Start 384: plm-bsp-landmark-e

384: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-e" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
384: Test timeout computed to be: 1500
384: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
384: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e.txt
384: EXPECTED_ERRNO is 
378: RETVAL: 0
378: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha
378: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha
378: Launching registration worker thread
378: Inside registration worker thread
378: Loading fixed landmarks: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-3.fcsv
378: Loading moving landmarks: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv
378: Doing registration stage
378: [1] xf_in->m_type = 0, xf_out->m_type = 0
378: RESAMPLE 1 1: (2 2 2), (2 2 2)
378: RESAMPLE 1 1: (2 2 2), (2 2 2)
378: volume_calc_grad complete.
378: bspline_xform_initialize
378: Warning: vox_per_rgn was less than 4.
378: Warning: vox_per_rgn was less than 4.
378: Warning: vox_per_rgn was less than 4.
378: rdims = (5,5,5)
378: vox_per_rgn = (4,4,4)
378: cdims = (8 8 8)
378: Algorithm flavor = h
378: Threading = 0
378: Landmarks: 8 fixed, 8 moving, lambda = 1.000000
378: >> Checking JH allocation
378: Computing landmark grid coordinates
378: image dc=-1 0 0 0 -1 0 0 0 1
378: image or=250 250 -236.842
378: image dm=19 19 19
378: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000)
378: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008)
378: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008)
378: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008)
378: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000)
378: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981)
378: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981)
378: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981)
378: BSPLINE PARMS
378: max_its = 5
378: max_feval = 5
378: BSPLINE XFORM HEADER
378: vox_per_rgn = 4 4 4
378: roi_offset = 0 0 0
378: roi_dim = 19 19 19
378: img_dc = -1 0 0 0 -1 0 0 0 1
378: BST METRICS
378: MET 110100 MSE 1.000000
378: Setting nmax, mmax = 1536 41
378: >>> START     
378: This problem is unconstrained.
378: [ 0,  0] SCORE   1785.722 NV   6859 GM  -104.585 GN      27.6 [     0.003 s ]
378:          MSE     1339.480 LM   446.242 
378:          CMIN   0.00 CAVG   0.00 CMAX   0.00
378:          LSD   0.00
378: [ 0,  1] SCORE   1740.786 NV   6859 GM  -103.163 GN      27.2 [     0.002 s ]
378:          MSE     1303.402 LM   437.384 
378:          CMIN  -0.03 CAVG   0.00 CMAX   0.57
378:          LSD   1.00
378: [ 0,  2] SCORE   1567.600 NV   6859 GM   -97.477 GN      25.7 [     0.002 s ]
378:          MSE     1164.662 LM   402.938 
378:          CMIN  -0.17 CAVG   0.01 CMAX   2.86
378:          LSD   5.00
378: [ 0,  3] SCORE    979.240 NV   6859 GM   -74.784 GN      19.7 [     0.002 s ]
378:          MSE      698.326 LM   280.914 
378:          CMIN  -0.71 CAVG   0.05 CMAX  12.03
378:          LSD  21.00
378: [ 1,  4] SCORE    118.835 NV   6859 GM     0.596 GN      3.68 [     0.002 s ]
378:          MSE       81.402 LM    37.433 
378:          CMIN  -1.76 CAVG   0.19 CMAX  39.56
378:          LSD  55.80
378: [ 2,  5] SCORE     69.736 NV   6859 GM     2.657 GN      2.64 [     0.002 s ]
378:          MSE       47.343 LM    22.393 
378:          CMIN  -3.07 CAVG   0.19 CMAX  44.32
378:          LSD  10.82
378: [2] xf_out->m_type = 9, xf_in->m_type = 0
378: Warping...
378: Running: plm_warp_native
378: Converting input image...
378: Converting xform...
378: bspline_xform_initialize
378: rdims = (5,5,5)
378: vox_per_rgn = (8,8,8)
378: cdims = (8 8 8)
378: Creating output vf...
378: Creating output volume...
378: Running native warper...
378: bspline_warp complete.
378: > Convert vf to itk
378: > Conversion complete.
378: plm_warp_native is complete.
378: Saving warped landmarks...
378: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-warped.fcsv
378: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
378: bspline_xform_initialize
378: rdims = (5,5,5)
378: vox_per_rgn = (8,8,8)
378: cdims = (8 8 8)
378: ** Registration worker thread finished.
378: Writing transformation ...
378: Warping...
378: Running: plm_warp_native
378: Converting input image...
378: Converting xform...
378: bspline_xform_initialize
378: rdims = (5,5,5)
378: vox_per_rgn = (8,8,8)
378: cdims = (8 8 8)
378: Creating output vf...
378: Creating output volume...
378: Running native warper...
378: bspline_warp complete.
378: Back convert to original type...
378: > Convert vf to itk
378: > Conversion complete.
378: plm_warp_native is complete.
378: Saving image...
378: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha
378: Saving vf...
378: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-vf.mha
378: Load:   0.026942
378: Run:    0.039958
378: Save:   0.0544851
378: Total:  0.121385
378: Finished!
378: 
378: STDERR: 
378: Not an error
125/571 Test #378: plm-bsp-landmark-c ....................   Passed    0.49 sec
test 387
        Start 387: plm-bsp-dcos-a

387: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
387: Test timeout computed to be: 1500
381: RETVAL: 0
381: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha
381: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha
381: Launching registration worker thread
381: Inside registration worker thread
381: Doing registration stage
381: [1] xf_in->m_type = 0, xf_out->m_type = 0
381: RESAMPLE 1 1: (2 2 2), (2 2 2)
381: RESAMPLE 1 1: (2 2 2), (2 2 2)
381: volume_calc_grad complete.
381: bspline_xform_initialize
381: Warning: vox_per_rgn was less than 4.
381: Warning: vox_per_rgn was less than 4.
381: Warning: vox_per_rgn was less than 4.
381: rdims = (5,5,5)
381: vox_per_rgn = (4,4,4)
381: cdims = (8 8 8)
381: Algorithm flavor = h
381: Threading = 0
381: Landmarks: 8 fixed, 8 moving, lambda = 1.000000
381: >> Checking JH allocation
381: Computing landmark grid coordinates
381: image dc=-1 0 0 0 -1 0 0 0 1
381: image or=250 250 -236.842
381: image dm=19 19 19
381: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000)
381: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008)
381: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008)
381: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008)
381: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000)
381: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981)
381: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981)
381: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981)
381: BSPLINE PARMS
381: max_its = 5
381: max_feval = 5
381: BSPLINE XFORM HEADER
381: vox_per_rgn = 4 4 4
381: roi_offset = 0 0 0
381: roi_dim = 19 19 19
381: img_dc = -1 0 0 0 -1 0 0 0 1
381: BST METRICS
381: MET 110100 MSE 1.000000
381: Setting nmax, mmax = 1536 41
381: >>> START     
381: This problem is unconstrained.
381: [ 0,  0] SCORE   1785.722 NV   6859 GM  -104.585 GN      27.6 [     0.004 s ]
381:          MSE     1339.480 LM   446.242 
381:          CMIN   0.00 CAVG   0.00 CMAX   0.00
381:          LSD   0.00
381: [ 0,  1] SCORE   1740.786 NV   6859 GM  -103.163 GN      27.2 [     0.003 s ]
381:          MSE     1303.402 LM   437.384 
381:          CMIN  -0.03 CAVG   0.00 CMAX   0.57
381:          LSD   1.00
381: [ 0,  2] SCORE   1567.600 NV   6859 GM   -97.477 GN      25.7 [     0.003 s ]
381:          MSE     1164.662 LM   402.938 
381:          CMIN  -0.17 CAVG   0.01 CMAX   2.86
381:          LSD   5.00
381: [ 0,  3] SCORE    979.240 NV   6859 GM   -74.784 GN      19.7 [     0.003 s ]
381:          MSE      698.326 LM   280.914 
381:          CMIN  -0.71 CAVG   0.05 CMAX  12.03
381:          LSD  21.00
381: [ 1,  4] SCORE    118.835 NV   6859 GM     0.596 GN      3.68 [     0.003 s ]
381:          MSE       81.402 LM    37.433 
381:          CMIN  -1.76 CAVG   0.19 CMAX  39.56
381:          LSD  55.80
381: [ 2,  5] SCORE     69.736 NV   6859 GM     2.657 GN      2.64 [     0.004 s ]
381:          MSE       47.343 LM    22.393 
381:          CMIN  -3.07 CAVG   0.19 CMAX  44.32
381:          LSD  10.82
381: [2] xf_out->m_type = 9, xf_in->m_type = 0
381: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
381: bspline_xform_initialize
381: rdims = (5,5,5)
381: vox_per_rgn = (8,8,8)
381: cdims = (8 8 8)
381: ** Registration worker thread finished.
381: Writing transformation ...
381: Warping...
381: Running: plm_warp_native
381: Converting input image...
381: Converting xform...
381: bspline_xform_initialize
381: rdims = (5,5,5)
381: vox_per_rgn = (8,8,8)
381: cdims = (8 8 8)
381: Creating output vf...
381: Creating output volume...
381: Running native warper...
381: bspline_warp complete.
381: Back convert to original type...
381: > Convert vf to itk
381: > Conversion complete.
381: plm_warp_native is complete.
381: Saving image...
381: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha
381: Saving vf...
381: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-vf.mha
381: Load:   0.0369751
381: Run:    0.026577
381: Save:   0.0523951
381: Total:  0.115947
381: Finished!
381: 
381: STDERR: 
387: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
387: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a.txt
387: EXPECTED_ERRNO is 
381: Not an error
126/571 Test #381: plm-bsp-landmark-d ....................   Passed    0.44 sec
test 390
        Start 390: plm-bsp-dcos-b

390: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
390: Test timeout computed to be: 1500
390: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
390: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b.txt
390: EXPECTED_ERRNO is 
384: RETVAL: 0
384: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha
384: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha
384: Loading fixed landmarks: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-3.txt
384: Error parsing fcsv file: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-3.txt
384: Loading moving landmarks: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.txt
384: Error parsing fcsv file: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.txt
384: Launching registration worker thread
384: Inside registration worker thread
384: Doing registration stage
384: [1] xf_in->m_type = 0, xf_out->m_type = 0
384: RESAMPLE 1 1: (2 2 2), (2 2 2)
384: RESAMPLE 1 1: (2 2 2), (2 2 2)
384: volume_calc_grad complete.
384: bspline_xform_initialize
384: Warning: vox_per_rgn was less than 4.
384: Warning: vox_per_rgn was less than 4.
384: Warning: vox_per_rgn was less than 4.
384: rdims = (5,5,5)
384: vox_per_rgn = (4,4,4)
384: cdims = (8 8 8)
384: Algorithm flavor = h
384: Threading = 0
384: Landmarks: 0 fixed, 0 moving, lambda = 1.000000
384: >> Checking JH allocation
384: BSPLINE PARMS
384: max_its = 5
384: max_feval = 5
384: BSPLINE XFORM HEADER
384: vox_per_rgn = 4 4 4
384: roi_offset = 0 0 0
384: roi_dim = 19 19 19
384: img_dc = -1 0 0 0 -1 0 0 0 1
384: BST METRICS
384: MET 110100 MSE 1.000000
384: Setting nmax, mmax = 1536 41
384: >>> START     
384: This problem is unconstrained.
384: [ 0,  0] MSE     1339.480 NV   6859 GM   -84.834 GN      23.2 [     0.006 s ]
384:          CMIN   0.00 CAVG   0.00 CMAX   0.00
384:          LSD   0.00
384: [ 0,  1] MSE     1303.294 NV   6859 GM   -83.620 GN      22.8 [     0.005 s ]
384:          CMIN  -0.04 CAVG   0.00 CMAX   0.59
384:          LSD   1.00
384: [ 0,  2] MSE     1164.232 NV   6859 GM   -78.768 GN      21.5 [     0.005 s ]
384:          CMIN  -0.19 CAVG   0.01 CMAX   2.96
384:          LSD   5.00
384: [ 0,  3] MSE      698.336 NV   6859 GM   -59.420 GN      16.2 [     0.005 s ]
384:          CMIN  -0.80 CAVG   0.05 CMAX  12.42
384:          LSD  21.00
384: [ 1,  4] MSE       89.012 NV   6859 GM     0.171 GN      3.29 [     0.005 s ]
384:          CMIN  -2.05 CAVG   0.17 CMAX  39.56
384:          LSD  52.33
384: [ 2,  5] MSE       51.991 NV   6859 GM     2.502 GN      2.38 [     0.005 s ]
384:          CMIN  -3.69 CAVG   0.18 CMAX  41.73
384:          LSD  11.03
384: [2] xf_out->m_type = 9, xf_in->m_type = 0
384: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
384: bspline_xform_initialize
384: rdims = (5,5,5)
384: vox_per_rgn = (8,8,8)
384: cdims = (8 8 8)
384: ** Registration worker thread finished.
384: Writing transformation ...
384: Warping...
384: Running: plm_warp_native
384: Converting input image...
384: Converting xform...
384: bspline_xform_initialize
384: rdims = (5,5,5)
384: vox_per_rgn = (8,8,8)
384: cdims = (8 8 8)
384: Creating output vf...
384: Creating output volume...
384: Running native warper...
384: bspline_warp complete.
384: Back convert to original type...
384: > Convert vf to itk
384: > Conversion complete.
384: plm_warp_native is complete.
384: Saving image...
384: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha
384: Saving warped landmarks...
384: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-warped.fcsv
384: Saving vf...
384: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-vf.mha
384: Load:   0.0268829
384: Run:    0.04125
384: Save:   0.0759289
384: Total:  0.144062
384: Finished!
384: 
384: STDERR: 
384: Not an error
127/571 Test #384: plm-bsp-landmark-e ....................   Passed    0.44 sec
test 393
        Start 393: plm-bsp-dcos-c

393: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
393: Test timeout computed to be: 1500
393: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
393: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c.txt
393: EXPECTED_ERRNO is 
387: RETVAL: 0
387: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha
387: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha
387: Launching registration worker thread
387: Inside registration worker thread
387: Doing registration stage
387: [1] xf_in->m_type = 0, xf_out->m_type = 0
387: RESAMPLE 1 1: (2 2 2), (2 2 2)
387: RESAMPLE 1 1: (2 2 2), (2 2 2)
387: volume_calc_grad complete.
387: bspline_xform_initialize
387: Warning: vox_per_rgn was less than 4.
387: Warning: vox_per_rgn was less than 4.
387: Warning: vox_per_rgn was less than 4.
387: rdims = (5,5,5)
387: vox_per_rgn = (4,4,4)
387: cdims = (8 8 8)
387: Algorithm flavor = g
387: Threading = 0
387: >> Checking JH allocation
387: BSPLINE PARMS
387: max_its = 5
387: max_feval = 5
387: BSPLINE XFORM HEADER
387: vox_per_rgn = 4 4 4
387: roi_offset = 0 0 0
387: roi_dim = 19 19 19
387: img_dc = 1 0 0 0 1 0 0 0 1
387: BST METRICS
387: MET 110100 MSE 1.000000
387: Setting nmax, mmax = 1536 41
387: >>> START     
387: This problem is unconstrained.
387: [ 0,  0] MSE     1969.037 NV   5719 GM   151.518 GN        29 [     0.016 s ]
387:          CMIN   0.00 CAVG   0.00 CMAX   0.00
387:          LSD   0.00
387: [ 0,  1] MSE     1948.891 NV   5719 GM   150.797 GN      28.8 [     0.008 s ]
387:          CMIN  -0.42 CAVG  -0.00 CMAX   0.04
387:          LSD   1.00
387: [ 0,  2] MSE     1873.200 NV   5719 GM   152.313 GN      29.2 [     0.010 s ]
387:          CMIN  -2.08 CAVG  -0.02 CMAX   0.22
387:          LSD   5.00
387: [ 0,  3] MSE     1636.130 NV   5719 GM   148.988 GN      28.8 [     0.008 s ]
387:          CMIN  -8.76 CAVG  -0.07 CMAX   0.93
387:          LSD  21.00
387: [ 0,  4] MSE     1351.434 NV   5719 GM    79.112 GN      23.8 [     0.015 s ]
387:          CMIN -35.44 CAVG  -0.29 CMAX   3.78
387:          LSD  85.00
387: [ 1,  5] MSE     6291.438 NV   5719 GM   -73.340 GN      33.2 [     0.008 s ]
387:          CMIN -126.28 CAVG  -0.93 CMAX  14.98
387:          LSD 199.65
387: [2] xf_out->m_type = 9, xf_in->m_type = 0
387: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
387: bspline_xform_initialize
387: rdims = (5,5,5)
387: vox_per_rgn = (8,8,8)
387: cdims = (8 8 8)
387: ** Registration worker thread finished.
387: Writing transformation ...
387: Warping...
387: Running: plm_warp_native
387: Converting input image...
387: Converting xform...
387: bspline_xform_initialize
387: rdims = (5,5,5)
387: vox_per_rgn = (8,8,8)
387: cdims = (8 8 8)
387: Creating output vf...
387: Creating output volume...
387: Running native warper...
387: bspline_warp complete.
387: Back convert to original type...
387: > Convert vf to itk
387: > Conversion complete.
387: plm_warp_native is complete.
387: Saving image...
387: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd
387: Saving vf...
387: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-vf.nrrd
387: Load:   0.0494938
387: Run:    0.07621
387: Save:   0.106519
387: Total:  0.232223
387: Finished!
387: 
387: STDERR: 
387: Not an error
128/571 Test #387: plm-bsp-dcos-a ........................   Passed    0.61 sec
test 396
        Start 396: plm-bsp-dcos-d

396: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
396: Test timeout computed to be: 1500
396: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
396: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d.txt
396: EXPECTED_ERRNO is 
390: RETVAL: 0
390: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha
390: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha
390: Launching registration worker thread
390: Inside registration worker thread
390: Doing registration stage
390: [1] xf_in->m_type = 0, xf_out->m_type = 0
390: RESAMPLE 1 1: (2 2 2), (2 2 2)
390: RESAMPLE 1 1: (2 2 2), (2 2 2)
390: volume_calc_grad complete.
390: bspline_xform_initialize
390: Warning: vox_per_rgn was less than 4.
390: Warning: vox_per_rgn was less than 4.
390: Warning: vox_per_rgn was less than 4.
390: rdims = (5,5,5)
390: vox_per_rgn = (4,4,4)
390: cdims = (8 8 8)
390: Algorithm flavor = g
390: Threading = 0
390: >> Checking JH allocation
390: BSPLINE PARMS
390: max_its = 5
390: max_feval = 5
390: BSPLINE XFORM HEADER
390: vox_per_rgn = 4 4 4
390: roi_offset = 0 0 0
390: roi_dim = 19 19 19
390: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1
390: BST METRICS
390: MET 110100 MSE 1.000000
390: Setting nmax, mmax = 1536 41
390: >>> START     
390: This problem is unconstrained.
390: [ 0,  0] MSE     2326.657 NV   5814 GM   -90.046 GN      30.1 [     0.022 s ]
390:          CMIN   0.00 CAVG   0.00 CMAX   0.00
390:          LSD   0.00
390: [ 0,  1] MSE     2292.385 NV   5814 GM   -88.991 GN      29.8 [     0.011 s ]
390:          CMIN  -0.09 CAVG   0.00 CMAX   0.49
390:          LSD   1.00
390: [ 0,  2] MSE     2160.182 NV   5814 GM   -88.027 GN      29.4 [     0.012 s ]
390:          CMIN  -0.46 CAVG   0.01 CMAX   2.46
390:          LSD   5.00
390: [ 0,  3] MSE     1684.673 NV   5814 GM   -70.229 GN      24.2 [     0.012 s ]
390:          CMIN  -1.93 CAVG   0.04 CMAX  10.33
390:          LSD  21.00
390: [ 1,  4] MSE      880.232 NV   5809 GM    22.704 GN      11.1 [     0.066 s ]
390:          CMIN -14.50 CAVG   0.20 CMAX  61.00
390:          LSD  95.90
390: [ 2,  5] MSE      621.998 NV   5814 GM     5.047 GN      4.55 [     0.011 s ]
390:          CMIN -12.15 CAVG   0.16 CMAX  47.74
390:          LSD  26.24
390: [2] xf_out->m_type = 9, xf_in->m_type = 0
390: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
390: bspline_xform_initialize
390: rdims = (5,5,5)
390: vox_per_rgn = (8,8,8)
390: cdims = (8 8 8)
390: ** Registration worker thread finished.
390: Writing transformation ...
390: Warping...
390: Running: plm_warp_native
390: Converting input image...
390: Converting xform...
390: bspline_xform_initialize
390: rdims = (5,5,5)
390: vox_per_rgn = (8,8,8)
390: cdims = (8 8 8)
390: Creating output vf...
390: Creating output volume...
390: Running native warper...
390: bspline_warp complete.
390: Back convert to original type...
390: > Convert vf to itk
390: > Conversion complete.
390: plm_warp_native is complete.
390: Saving image...
390: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd
390: Saving vf...
390: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-vf.nrrd
390: Load:   0.0720739
390: Run:    0.146826
390: Save:   0.108032
390: Total:  0.326932
390: Finished!
390: 
390: STDERR: 
390: Not an error
129/571 Test #390: plm-bsp-dcos-b ........................   Passed    0.62 sec
test 399
        Start 399: plm-bsp-dcos-e

399: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-e" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
399: Test timeout computed to be: 1500
399: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
399: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e.txt
399: EXPECTED_ERRNO is 
393: RETVAL: 0
393: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha
393: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha
393: Launching registration worker thread
393: Inside registration worker thread
393: Doing registration stage
393: [1] xf_in->m_type = 0, xf_out->m_type = 0
393: RESAMPLE 1 1: (2 2 2), (2 2 2)
393: RESAMPLE 1 1: (2 2 2), (2 2 2)
393: volume_calc_grad complete.
393: bspline_xform_initialize
393: Warning: vox_per_rgn was less than 4.
393: Warning: vox_per_rgn was less than 4.
393: Warning: vox_per_rgn was less than 4.
393: rdims = (5,5,5)
393: vox_per_rgn = (4,4,4)
393: cdims = (8 8 8)
393: Algorithm flavor = c
393: Threading = 0
393: >> Checking JH allocation
393: BSPLINE PARMS
393: max_its = 5
393: max_feval = 5
393: BSPLINE XFORM HEADER
393: vox_per_rgn = 4 4 4
393: roi_offset = 0 0 0
393: roi_dim = 19 19 19
393: img_dc = 1 0 0 0 1 0 0 0 1
393: BST METRICS
393: MET 110100 MSE 1.000000
393: Setting nmax, mmax = 1536 41
393: >>> START     
393: This problem is unconstrained.
393: [ 0,  0] MSE     1969.041 NV   5719 GM   151.518 GN        29 [     0.005 s ]
393:          CMIN   0.00 CAVG   0.00 CMAX   0.00
393:          LSD   0.00
393: [ 0,  1] MSE     1948.894 NV   5719 GM   150.797 GN      28.8 [     0.005 s ]
393:          CMIN  -0.42 CAVG  -0.00 CMAX   0.04
393:          LSD   1.00
393: [ 0,  2] MSE     1873.203 NV   5719 GM   152.313 GN      29.2 [     0.005 s ]
393:          CMIN  -2.08 CAVG  -0.02 CMAX   0.22
393:          LSD   5.00
393: [ 0,  3] MSE     1636.132 NV   5719 GM   148.988 GN      28.8 [     0.005 s ]
393:          CMIN  -8.76 CAVG  -0.07 CMAX   0.93
393:          LSD  21.00
393: [ 0,  4] MSE     1351.435 NV   5719 GM    79.113 GN      23.8 [     0.005 s ]
393:          CMIN -35.44 CAVG  -0.29 CMAX   3.78
393:          LSD  85.00
393: [ 1,  5] MSE     6291.440 NV   5719 GM   -73.340 GN      33.2 [     0.005 s ]
393:          CMIN -126.28 CAVG  -0.93 CMAX  14.98
393:          LSD 199.65
393: [2] xf_out->m_type = 9, xf_in->m_type = 0
393: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
393: bspline_xform_initialize
393: rdims = (5,5,5)
393: vox_per_rgn = (8,8,8)
393: cdims = (8 8 8)
393: ** Registration worker thread finished.
393: Writing transformation ...
393: Warping...
393: Running: plm_warp_native
393: Converting input image...
393: Converting xform...
393: bspline_xform_initialize
393: rdims = (5,5,5)
393: vox_per_rgn = (8,8,8)
393: cdims = (8 8 8)
393: Creating output vf...
393: Creating output volume...
393: Running native warper...
393: bspline_warp complete.
393: Back convert to original type...
393: > Convert vf to itk
393: > Conversion complete.
393: plm_warp_native is complete.
393: Saving image...
393: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd
393: Saving vf...
393: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-vf.nrrd
393: Load:   0.0666499
393: Run:    0.03725
393: Save:   0.123241
393: Total:  0.227141
393: Finished!
393: 
393: STDERR: 
393: Not an error
130/571 Test #393: plm-bsp-dcos-c ........................   Passed    0.69 sec
test 402
        Start 402: plm-bsp-dcos-f

402: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-f" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
402: Test timeout computed to be: 1500
396: RETVAL: 0
396: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha
396: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha
396: Launching registration worker thread
396: Inside registration worker thread
396: Doing registration stage
396: [1] xf_in->m_type = 0, xf_out->m_type = 0
396: RESAMPLE 1 1: (2 2 2), (2 2 2)
396: RESAMPLE 1 1: (2 2 2), (2 2 2)
396: volume_calc_grad complete.
396: bspline_xform_initialize
396: Warning: vox_per_rgn was less than 4.
396: Warning: vox_per_rgn was less than 4.
396: Warning: vox_per_rgn was less than 4.
396: rdims = (5,5,5)
396: vox_per_rgn = (4,4,4)
396: cdims = (8 8 8)
396: Algorithm flavor = c
396: Threading = 0
396: >> Checking JH allocation
396: BSPLINE PARMS
396: max_its = 5
396: max_feval = 5
396: BSPLINE XFORM HEADER
396: vox_per_rgn = 4 4 4
396: roi_offset = 0 0 0
396: roi_dim = 19 19 19
396: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1
396: BST METRICS
396: MET 110100 MSE 1.000000
396: Setting nmax, mmax = 1536 41
396: >>> START     
396: This problem is unconstrained.
396: [ 0,  0] MSE     2326.658 NV   5814 GM   -90.046 GN      30.1 [     0.005 s ]
396:          CMIN   0.00 CAVG   0.00 CMAX   0.00
396:          LSD   0.00
396: [ 0,  1] MSE     2292.385 NV   5814 GM   -88.991 GN      29.8 [     0.005 s ]
396:          CMIN  -0.09 CAVG   0.00 CMAX   0.49
396:          LSD   1.00
396: [ 0,  2] MSE     2160.182 NV   5814 GM   -88.027 GN      29.4 [     0.005 s ]
396:          CMIN  -0.46 CAVG   0.01 CMAX   2.46
396:          LSD   5.00
396: [ 0,  3] MSE     1684.673 NV   5814 GM   -70.229 GN      24.2 [     0.005 s ]
396:          CMIN  -1.93 CAVG   0.04 CMAX  10.33
396:          LSD  21.00
396: [ 1,  4] MSE      880.230 NV   5809 GM    22.704 GN      11.1 [     0.027 s ]
396:          CMIN -14.50 CAVG   0.20 CMAX  61.00
396:          LSD  95.90
396: [ 2,  5] MSE      621.998 NV   5814 GM     5.047 GN      4.55 [     0.005 s ]
396:          CMIN -12.15 CAVG   0.16 CMAX  47.74
396:          LSD  26.24
396: [2] xf_out->m_type = 9, xf_in->m_type = 0
396: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
396: bspline_xform_initialize
396: rdims = (5,5,5)
396: vox_per_rgn = (8,8,8)
396: cdims = (8 8 8)
396: ** Registration worker thread finished.
396: Writing transformation ...
396: Warping...
396: Running: plm_warp_native
396: Converting input image...
396: Converting xform...
396: bspline_xform_initialize
396: rdims = (5,5,5)
396: vox_per_rgn = (8,8,8)
396: cdims = (8 8 8)
396: Creating output vf...
396: Creating output volume...
396: Running native warper...
396: bspline_warp complete.
396: Back convert to original type...
396: > Convert vf to itk
396: > Conversion complete.
396: plm_warp_native is complete.
396: Saving image...
396: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd
396: Saving vf...
396: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-vf.nrrd
396: Load:   0.0270481
396: Run:    0.0692718
396: Save:   0.130744
396: Total:  0.227064
396: Finished!
396: 
396: STDERR: 
402: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
402: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f.txt
402: EXPECTED_ERRNO is 
399: RETVAL: 0
399: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha
399: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha
399: Launching registration worker thread
399: Inside registration worker thread
399: Doing registration stage
399: [1] xf_in->m_type = 0, xf_out->m_type = 0
399: RESAMPLE 1 1: (2 2 2), (2 2 2)
399: RESAMPLE 1 1: (2 2 2), (2 2 2)
399: volume_calc_grad complete.
399: bspline_xform_initialize
399: Warning: vox_per_rgn was less than 4.
399: Warning: vox_per_rgn was less than 4.
399: Warning: vox_per_rgn was less than 4.
399: rdims = (5,5,5)
399: vox_per_rgn = (4,4,4)
399: cdims = (8 8 8)
399: Algorithm flavor = h
399: Threading = 0
399: >> Checking JH allocation
399: BSPLINE PARMS
399: max_its = 5
399: max_feval = 5
399: BSPLINE XFORM HEADER
399: vox_per_rgn = 4 4 4
399: roi_offset = 0 0 0
399: roi_dim = 19 19 19
399: img_dc = 1 0 0 0 1 0 0 0 1
399: BST METRICS
399: MET 110100 MSE 1.000000
399: Setting nmax, mmax = 1536 41
399: >>> START     
399: This problem is unconstrained.
399: [ 0,  0] MSE     1969.037 NV   5719 GM   151.518 GN        29 [     0.002 s ]
399:          CMIN   0.00 CAVG   0.00 CMAX   0.00
399:          LSD   0.00
399: [ 0,  1] MSE     1948.891 NV   5719 GM   150.797 GN      28.8 [     0.002 s ]
399:          CMIN  -0.42 CAVG  -0.00 CMAX   0.04
399:          LSD   1.00
399: [ 0,  2] MSE     1873.200 NV   5719 GM   152.313 GN      29.2 [     0.002 s ]
399:          CMIN  -2.08 CAVG  -0.02 CMAX   0.22
399:          LSD   5.00
399: [ 0,  3] MSE     1636.130 NV   5719 GM   148.988 GN      28.8 [     0.002 s ]
399:          CMIN  -8.76 CAVG  -0.07 CMAX   0.93
399:          LSD  21.00
399: [ 0,  4] MSE     1351.434 NV   5719 GM    79.112 GN      23.8 [     0.002 s ]
399:          CMIN -35.44 CAVG  -0.29 CMAX   3.78
399:          LSD  85.00
399: [ 1,  5] MSE     6291.438 NV   5719 GM   -73.340 GN      33.2 [     0.002 s ]
399:          CMIN -126.28 CAVG  -0.93 CMAX  14.98
399:          LSD 199.65
399: [2] xf_out->m_type = 9, xf_in->m_type = 0
399: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
399: bspline_xform_initialize
399: rdims = (5,5,5)
399: vox_per_rgn = (8,8,8)
399: cdims = (8 8 8)
399: ** Registration worker thread finished.
399: Writing transformation ...
399: Warping...
399: Running: plm_warp_native
399: Converting input image...
399: Converting xform...
399: bspline_xform_initialize
399: rdims = (5,5,5)
399: vox_per_rgn = (8,8,8)
399: cdims = (8 8 8)
399: Creating output vf...
399: Creating output volume...
399: Running native warper...
399: bspline_warp complete.
399: Back convert to original type...
399: > Convert vf to itk
399: > Conversion complete.
399: plm_warp_native is complete.
399: Saving image...
399: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd
399: Saving vf...
399: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-vf.nrrd
399: Load:   0.02879
399: Run:    0.0220392
399: Save:   0.061049
399: Total:  0.111878
399: Finished!
399: 
399: STDERR: 
396: Not an error
131/571 Test #396: plm-bsp-dcos-d ........................   Passed    0.56 sec
test 405
        Start 405: plm-reg-multi-a

405: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
405: Test timeout computed to be: 1500
399: Not an error
132/571 Test #399: plm-bsp-dcos-e ........................   Passed    0.49 sec
test 408
        Start 408: plm-reg-multi-b

408: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
408: Test timeout computed to be: 1500
371: RETVAL: 0
371: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha
371: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha
371: Launching registration worker thread
371: Inside registration worker thread
371: Doing registration stage
371: [1] xf_in->m_type = 0, xf_out->m_type = 0
371: RESAMPLE 1 1: (1 1 1), (1 1 1)
371: RESAMPLE 1 1: (1 1 1), (1 1 1)
371: volume_calc_grad complete.
371: bspline_xform_initialize
371: Warning: vox_per_rgn was less than 4.
371: Warning: vox_per_rgn was less than 4.
371: Warning: vox_per_rgn was less than 4.
371: rdims = (10,10,10)
371: vox_per_rgn = (4,4,4)
371: cdims = (13 13 13)
371: Algorithm flavor = g
371: Threading = 0
371: Regularization: flavor = a lambda = 1.000000
371: >> Checking JH allocation
371: BSPLINE PARMS
371: max_its = 5
371: max_feval = 5
371: BSPLINE XFORM HEADER
371: vox_per_rgn = 4 4 4
371: roi_offset = 0 0 0
371: roi_dim = 38 38 38
371: img_dc = 1 0 0 0 1 0 0 0 1
371: BST METRICS
371: MET 110100 MSE 1.000000
371: Setting nmax, mmax = 6591 83
371: >>> START     
371: This problem is unconstrained.
371: [ 0,  0] SCORE   5540.166 NV  54872 GM     0.000 GN      28.2 [     0.423 s ]
371:          MSE     5540.166 RM     0.000 [     0.058 |     0.365 ]
371:          CMIN   0.00 CAVG   0.00 CMAX   0.00
371:          LSD   0.00
371: [ 0,  1] SCORE   5484.185 NV  54872 GM     0.045 GN      27.7 [     0.296 s ]
371:          MSE     5484.124 RM     0.061 [     0.014 |     0.283 ]
371:          CMIN  -0.16 CAVG  -0.00 CMAX   0.22
371:          LSD   1.00
371: [ 0,  2] SCORE   5267.761 NV  54872 GM     0.224 GN      25.8 [     0.250 s ]
371:          MSE     5266.236 RM     1.525 [     0.016 |     0.234 ]
371:          CMIN  -0.81 CAVG   0.00 CMAX   1.12
371:          LSD   5.00
371: [ 0,  3] SCORE   4511.430 NV  54872 GM     0.928 GN      18.4 [     0.281 s ]
371:          MSE     4484.536 RM    26.894 [     0.010 |     0.271 ]
371:          CMIN  -3.39 CAVG   0.00 CMAX   4.70
371:          LSD  21.00
371: [ 1,  4] SCORE   3229.400 NV  54872 GM     1.898 GN      2.39 [     0.228 s ]
371:          MSE     3018.981 RM   210.419 [     0.013 |     0.215 ]
371:          CMIN  -9.73 CAVG  -0.00 CMAX  13.18
371:          LSD  40.25
371: [ 2,  5] SCORE   3185.099 NV  54872 GM     4.098 GN      2.08 [     0.233 s ]
371:          MSE     2976.101 RM   208.998 [     0.016 |     0.217 ]
371:          CMIN  -9.60 CAVG  -0.00 CMAX  13.44
371:          LSD   5.50
371: [2] xf_out->m_type = 9, xf_in->m_type = 0
371: ** Registration worker thread finished.
371: Writing transformation ...
371: Warping...
371: Running: plm_warp_native
371: Converting input image...
371: Converting xform...
371: bspline_xform_initialize
371: rdims = (10,10,10)
371: vox_per_rgn = (4,4,4)
371: cdims = (13 13 13)
371: Creating output vf...
371: Creating output volume...
371: Running native warper...
371: bspline_warp complete.
371: Back convert to original type...
371: > Convert vf to itk
371: > Conversion complete.
371: plm_warp_native is complete.
371: Saving image...
371: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-img.mha
371: Saving vf...
371: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha
371: Load:   0.127194
371: Run:    1.76156
371: Save:   0.0526252
371: Total:  1.94138
371: Finished!
371: 
371: STDERR: 
405: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
405: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a.txt
405: EXPECTED_ERRNO is 
408: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
408: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b.txt
408: EXPECTED_ERRNO is 
371: Not an error
133/571 Test #371: plm-bsp-regularize-numeric ............   Passed    2.32 sec
test 411
        Start 411: plm-reg-dv-itk-translation

411: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-dv-itk-translation" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
411: Test timeout computed to be: 1500
411: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
411: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation.txt
411: EXPECTED_ERRNO is 
402: RETVAL: 0
402: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha
402: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha
402: Launching registration worker thread
402: Inside registration worker thread
402: Doing registration stage
402: [1] xf_in->m_type = 0, xf_out->m_type = 0
402: RESAMPLE 1 1: (2 2 2), (2 2 2)
402: RESAMPLE 1 1: (2 2 2), (2 2 2)
402: volume_calc_grad complete.
402: bspline_xform_initialize
402: Warning: vox_per_rgn was less than 4.
402: Warning: vox_per_rgn was less than 4.
402: Warning: vox_per_rgn was less than 4.
402: rdims = (5,5,5)
402: vox_per_rgn = (4,4,4)
402: cdims = (8 8 8)
402: Algorithm flavor = h
402: Threading = 0
402: >> Checking JH allocation
402: BSPLINE PARMS
402: max_its = 5
402: max_feval = 5
402: BSPLINE XFORM HEADER
402: vox_per_rgn = 4 4 4
402: roi_offset = 0 0 0
402: roi_dim = 19 19 19
402: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1
402: BST METRICS
402: MET 110100 MSE 1.000000
402: Setting nmax, mmax = 1536 41
402: >>> START     
402: This problem is unconstrained.
402: [ 0,  0] MSE     2326.657 NV   5814 GM   -90.046 GN      30.1 [     0.005 s ]
402:          CMIN   0.00 CAVG   0.00 CMAX   0.00
402:          LSD   0.00
402: [ 0,  1] MSE     2292.385 NV   5814 GM   -88.991 GN      29.8 [     0.005 s ]
402:          CMIN  -0.09 CAVG   0.00 CMAX   0.49
402:          LSD   1.00
402: [ 0,  2] MSE     2160.182 NV   5814 GM   -88.027 GN      29.4 [     0.005 s ]
402:          CMIN  -0.46 CAVG   0.01 CMAX   2.46
402:          LSD   5.00
402: [ 0,  3] MSE     1684.673 NV   5814 GM   -70.229 GN      24.2 [     0.005 s ]
402:          CMIN  -1.93 CAVG   0.04 CMAX  10.33
402:          LSD  21.00
402: [ 1,  4] MSE      880.232 NV   5809 GM    22.704 GN      11.1 [     0.005 s ]
402:          CMIN -14.50 CAVG   0.20 CMAX  61.00
402:          LSD  95.90
402: [ 2,  5] MSE      621.998 NV   5814 GM     5.047 GN      4.55 [     0.005 s ]
402:          CMIN -12.15 CAVG   0.16 CMAX  47.74
402:          LSD  26.24
402: [2] xf_out->m_type = 9, xf_in->m_type = 0
402: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
402: bspline_xform_initialize
402: rdims = (5,5,5)
402: vox_per_rgn = (8,8,8)
402: cdims = (8 8 8)
402: ** Registration worker thread finished.
402: Writing transformation ...
402: Warping...
402: Running: plm_warp_native
402: Converting input image...
402: Converting xform...
402: bspline_xform_initialize
402: rdims = (5,5,5)
402: vox_per_rgn = (8,8,8)
402: cdims = (8 8 8)
402: Creating output vf...
402: Creating output volume...
402: Running native warper...
402: bspline_warp complete.
402: Back convert to original type...
402: > Convert vf to itk
402: > Conversion complete.
402: plm_warp_native is complete.
402: Saving image...
402: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd
402: Saving vf...
402: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-vf.nrrd
402: Load:   0.0570569
402: Run:    0.0383432
402: Save:   0.129088
402: Total:  0.224488
402: Finished!
402: 
402: STDERR: 
402: Not an error
134/571 Test #402: plm-bsp-dcos-f ........................   Passed    0.67 sec
test 420
        Start 420: plm-reg-process-a

420: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-process-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
420: Test timeout computed to be: 1500
420: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
420: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.txt
420: EXPECTED_ERRNO is 
405: RETVAL: 0
405: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha
405: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha
405: Launching registration worker thread
405: Inside registration worker thread
405: Doing registration stage
405: [1] xf_in->m_type = 0, xf_out->m_type = 0
405: Fixed image for this stage:
405: Dim = 19 19 19
405: Origin = -236.842 -236.842 -236.842
405: Spacing = 26.3158 26.3158 26.3158
405: Direction Cosines =
405:  1 0 0
405:  0 1 0
405:  0 0 1
405: Moving image for this stage:
405: Dim = 19 19 19
405: Origin = -236.842 -236.842 -236.842
405: Spacing = 26.3158 26.3158 26.3158
405: Direction Cosines =
405:  1 0 0
405:  0 1 0
405:  0 0 1
405: Initial Parameters = [0, 0, 0, 0, 0, 0]
405: Starting ITK registration
405: StartEvent: [0, 0, 0, 0, 0, 0]
405: MSE [ 0,  0,10.00]  2961.438 [1.5937427139384403e-23, -8.106231689300783e-8, 8.106231689440044e-8, -9.999999999999998, -4.1779009000267946e-15, -4.874217716697927e-15] *
405: MSE [ 1,  1,10.00]  2086.091 [-2.1975043898826583e-18, -3.3499860475672906e-7, 3.349986057258762e-7, -19.999999999999872, -9.942357123285172e-7, -9.942357120533767e-7]    -875.35 *
405: MSE [ 2,  2, 5.00]  1944.674 [-1.8114681659826874e-17, -0.0000020387763678196736, 0.0000020387763874640126, -15.000000000094076, -0.000022427961023322086, -0.000022427960963904937]    -141.42 *
405: MSE [ 3,  3, 2.50]  1989.993 [-8.401528455835467e-17, -0.000008253984619438524, 0.000008253984726401734, -17.499999999592845, -0.00005557255691303111, -0.00005557255639928453]      45.32
405: MSE [ 4,  4, 2.50]  1946.484 [-1.5670312605156978e-14, -0.0010533617728921126, 0.0010533617928269064, -19.999966305224685, -0.008992370046015082, -0.008992369920863507]     -43.51
405: EndEvent: [-1.5670312605156978e-14, -0.0010533617728921126, 0.0010533617928269064, -19.999966305224685, -0.008992370046015082, -0.008992369920863507]
405: VersorRigid3DTransformOptimizer: Maximum number of iterations (5) exceeded.
405: ITK registration complete
405: [2] xf_out->m_type = 2, xf_in->m_type = 0
405: Warping...
405: plm_warp_itk: xform_to_itk_vf
405: plm_warp_itk: convert_to_itk
405: plm_warp_itk: warping...
405: Saving image...
405: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stage-1.mha
405: Doing registration stage
405: [1] xf_in->m_type = 2, xf_out->m_type = 0
405: SUBSAMPLE: (1 1 1), (1 1 1)
405: volume_calc_grad complete.
405: kerx: 0.0000000000 1.0000000000 0.0000000000 
405: kery: 0.0000000000 1.0000000000 0.0000000000 
405: kerz: 0.0000000000 1.0000000000 0.0000000000 
405: MSE [   0] 4770.7 (0.947) [ 0.051 secs]
405: MSE [   1] 4770.7 (0.947) [ 0.051 secs]
405: MSE [   2] 4770.7 (0.947) [ 0.056 secs]
405: MSE [   3] 4770.7 (0.947) [ 0.078 secs]
405: MSE [   4] 4770.7 (0.947) [ 0.087 secs]
405: Time for 5 iterations = 0.323642 (0.064728 sec / it)
405: [2] xf_out->m_type = 10, xf_in->m_type = 2
405: ** Registration worker thread finished.
405: Warping...
405: plm_warp_itk: xform_to_itk_vf
405: plm_warp_itk: convert_to_itk
405: plm_warp_itk: warping...
405: Saving image...
405: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-img.nrrd
405: Saving vf...
405: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd
405: Load:   0.045357
405: Run:    0.354099
405: Save:   0.0528381
405: Total:  0.452294
405: Finished!
405: 
405: STDERR: 
411: RETVAL: 0
411: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
411: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
411: Launching registration worker thread
411: Inside registration worker thread
411: Doing registration stage
411: [1] xf_in->m_type = 0, xf_out->m_type = 0
411: Fixed image for this stage:
411: Dim = 19 19 19
411: Origin = -24.3421 -24.3421 -24.3421
411: Spacing = 2.63158 2.63158 2.63158
411: Direction Cosines =
411:  1 0 0
411:  0 1 0
411:  0 0 1
411: Moving image for this stage:
411: Dim = 19 19 19
411: Origin = -24.3421 -24.3421 -24.3421
411: Spacing = 2.63158 2.63158 2.63158
411: Direction Cosines =
411:  1 0 0
411:  0 1 0
411:  0 0 1
411: Initial Parameters = [0, 0, 0]
411: Starting ITK registration
411: StartEvent: [0, 0, 0]
411: MSE [ 0,  0,10.00] 18756.235 [0, 0, 0] *
411: MSE [ 1,  1, 5.00]     1.116 [9.999997615028182, -0.004883617032987267, -0.004883617032989416]  -18755.12 *
411: MSE [ 2,  2, 2.50]  5544.602 [5.318441699151569, 1.2366948554205732, 1.2366948554207535]    5543.49
411: MSE [ 3,  3, 2.50]  1453.699 [7.610651940085846, 0.5310844064631219, 0.531084406463199]   -4090.90
411: MSE [ 4,  4, 1.25]     4.252 [9.961460585442481, -0.07045474975050126, -0.07045474975051347]   -1449.45
411: EndEvent: [9.961460585442481, -0.07045474975050126, -0.07045474975051347]
411: RegularStepGradientDescentOptimizer: Maximum number of iterations (5) exceeded.
411: ITK registration complete
411: [2] xf_out->m_type = 1, xf_in->m_type = 0
411: ** Registration worker thread finished.
411: Writing transformation ...
411: Warping...
411: plm_warp_itk: xform_to_itk_vf
411: plm_warp_itk: convert_to_itk
411: plm_warp_itk: warping...
411: Saving image...
411: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd
411: Saving vf...
411: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-vf.nrrd
411: Load:   0.0443928
411: Run:    0.061378
411: Save:   0.0612381
411: Total:  0.167009
411: Finished!
411: 
411: STDERR: 
405: Not an error
135/571 Test #405: plm-reg-multi-a .......................   Passed    0.74 sec
test 423
        Start 423: plm-reg-trans-a

423: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
423: Test timeout computed to be: 1500
411: Not an error
136/571 Test #411: plm-reg-dv-itk-translation ............   Passed    0.64 sec
test 426
        Start 426: plm-reg-trans-b

426: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
426: Test timeout computed to be: 1500
423: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
423: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.txt
423: EXPECTED_ERRNO is 
426: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
426: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.txt
426: EXPECTED_ERRNO is 
420: RETVAL: 0
420: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
420: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
420: Launching registration worker thread
420: Inside registration worker thread
420: *** Executing adjust process ***
420: ** Registration worker thread finished.
420: Warping...
420: plm_warp_itk: xform_to_itk_vf
420: plm_warp_itk: convert_to_itk
420: plm_warp_itk: warping...
420: Saving image...
420: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha
420: Load:   0.0511711
420: Run:    0.00652003
420: Save:   0.00980401
420: Total:  0.0674951
420: Finished!
420: 
420: STDERR: 
420: Not an error
137/571 Test #420: plm-reg-process-a .....................   Passed    0.42 sec
test 429
        Start 429: plm-reg-trans-mi-a

429: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-mi-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
429: Test timeout computed to be: 1500
429: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
429: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.txt
429: EXPECTED_ERRNO is 
408: RETVAL: 0
408: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha
408: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha
408: Launching registration worker thread
408: Inside registration worker thread
408: Doing registration stage
408: [1] xf_in->m_type = 0, xf_out->m_type = 0
408: RESAMPLE 1 1: (4 4 4), (4 4 4)
408: RESAMPLE 1 1: (4 4 4), (4 4 4)
408: volume_calc_grad complete.
408: bspline_xform_initialize
408: Warning: vox_per_rgn was less than 4.
408: Warning: vox_per_rgn was less than 4.
408: Warning: vox_per_rgn was less than 4.
408: rdims = (3,3,3)
408: vox_per_rgn = (4,4,4)
408: cdims = (6 6 6)
408: Algorithm flavor = g
408: Threading = 0
408: >> Checking JH allocation
408: BSPLINE PARMS
408: max_its = 20
408: max_feval = 20
408: BSPLINE XFORM HEADER
408: vox_per_rgn = 4 4 4
408: roi_offset = 0 0 0
408: roi_dim = 9 9 9
408: img_dc = 1 0 0 0 1 0 0 0 1
408: BST METRICS
408: MET 110100 MSE 1.000000
408: Setting nmax, mmax = 648 27
408: >>> START     
408: This problem is unconstrained.
408: [ 0,  0] MSE     1310.066 NV    729 GM    32.312 GN      10.8 [     0.010 s ]
408:          CMIN   0.00 CAVG   0.00 CMAX   0.00
408:          LSD   0.00
408: [ 0,  1] MSE     1295.068 NV    729 GM    32.107 GN      10.8 [     0.008 s ]
408:          CMIN  -0.80 CAVG  -0.00 CMAX   0.03
408:          LSD   1.00
408: [ 0,  2] MSE     1236.886 NV    729 GM    31.289 GN      10.5 [     0.008 s ]
408:          CMIN  -3.98 CAVG  -0.02 CMAX   0.14
408:          LSD   5.00
408: [ 0,  3] MSE     1033.121 NV    729 GM    28.011 GN       9.4 [     0.024 s ]
408:          CMIN -16.73 CAVG  -0.10 CMAX   0.57
408:          LSD  21.00
408: [ 1,  4] MSE     1227.425 NV    729 GM   -31.287 GN      10.6 [     0.008 s ]
408:          CMIN -130.39 CAVG  -0.75 CMAX  15.78
408:          LSD 145.43
408: [ 1,  5] MSE      666.262 NV    729 GM    16.009 GN      5.49 [     0.008 s ]
408:          CMIN -63.32 CAVG  -0.36 CMAX   6.81
408:          LSD  59.61
408: [ 2,  6] MSE     1232.974 NV    729 GM   -31.573 GN      10.6 [     0.008 s ]
408:          CMIN -133.31 CAVG  -0.76 CMAX  26.37
408:          LSD  96.76
408: [ 2,  7] MSE      663.364 NV    729 GM   -16.837 GN      5.81 [     0.008 s ]
408:          CMIN -74.19 CAVG  -0.42 CMAX   9.85
408:          LSD  15.03
408: [ 3,  8] MSE      654.961 NV    729 GM   -10.617 GN       3.9 [     0.008 s ]
408:          CMIN -69.17 CAVG  -0.40 CMAX   9.75
408:          LSD   6.20
408: [ 4,  9] MSE      648.056 NV    729 GM    16.849 GN      5.74 [     0.008 s ]
408:          CMIN -59.17 CAVG  -0.35 CMAX  12.07
408:          LSD  13.05
408: [ 4, 10] MSE      648.518 NV    729 GM     6.481 GN      2.37 [     0.007 s ]
408:          CMIN -64.64 CAVG  -0.37 CMAX  10.80
408:          LSD   5.91
408: [ 5, 11] MSE      642.586 NV    729 GM    -2.800 GN      1.61 [     0.008 s ]
408:          CMIN -65.72 CAVG  -0.38 CMAX  12.16
408:          LSD   3.39
408: [ 6, 12] MSE      621.446 NV    729 GM    -3.050 GN      1.62 [     0.011 s ]
408:          CMIN -65.92 CAVG  -0.39 CMAX  17.36
408:          LSD  11.87
408: [ 6, 13] MSE      550.866 NV    729 GM    -6.628 GN      2.45 [     0.008 s ]
408:          CMIN -66.69 CAVG  -0.41 CMAX  38.13
408:          LSD  59.33
408: [ 7, 14] MSE      512.605 NV    729 GM    -3.857 GN      1.62 [     0.008 s ]
408:          CMIN -62.22 CAVG  -0.42 CMAX  47.82
408:          LSD  24.85
408: [ 7, 15] MSE      447.450 NV    729 GM     1.527 GN      1.38 [     0.008 s ]
408:          CMIN -86.57 CAVG  -0.48 CMAX  86.57
408:          LSD 124.23
408: [ 7, 16] MSE      464.351 NV    729 GM     2.120 GN       1.3 [     0.015 s ]
408:          CMIN -65.28 CAVG  -0.45 CMAX  65.28
408:          LSD  69.63
408: [ 8, 17] MSE      472.701 NV    729 GM    -6.632 GN      2.42 [     0.009 s ]
408:          CMIN -65.88 CAVG  -0.45 CMAX  65.88
408:          LSD  10.76
408: [ 8, 18] MSE      465.428 NV    729 GM     2.619 GN      1.34 [     0.008 s ]
408:          CMIN -65.36 CAVG  -0.45 CMAX  65.36
408:          LSD   1.50
408: [ 8, 19] MSE      464.475 NV    729 GM     2.117 GN       1.3 [     0.008 s ]
408:          CMIN -65.29 CAVG  -0.45 CMAX  65.29
408:          LSD   0.17
408: [ 8, 20] MSE      464.365 NV    729 GM     2.120 GN       1.3 [     0.017 s ]
408:          CMIN -65.28 CAVG  -0.45 CMAX  65.28
408:          LSD   0.02
408: [2] xf_out->m_type = 9, xf_in->m_type = 0
408: Doing registration stage
408: [1] xf_in->m_type = 9, xf_out->m_type = 0
408: RESAMPLE 1 1: (1 1 1), (1 1 1)
408: RESAMPLE 1 1: (1 1 1), (1 1 1)
408: volume_calc_grad complete.
408: bspline_xform_initialize
408: Warning: vox_per_rgn was less than 4.
408: Warning: vox_per_rgn was less than 4.
408: Warning: vox_per_rgn was less than 4.
408: rdims = (10,10,10)
408: vox_per_rgn = (4,4,4)
408: cdims = (13 13 13)
408: Algorithm flavor = g
408: Threading = 0
408: >> Checking JH allocation
408: BSPLINE PARMS
408: max_its = 20
408: max_feval = 20
408: BSPLINE XFORM HEADER
408: vox_per_rgn = 4 4 4
408: roi_offset = 0 0 0
408: roi_dim = 38 38 38
408: img_dc = 1 0 0 0 1 0 0 0 1
408: BST METRICS
408: MET 110100 MSE 1.000000
408: Setting nmax, mmax = 6591 83
408: >>> START     
408: This problem is unconstrained.
408: [ 0,  0] MSE     2187.416 NV  54548 GM   -54.885 GN      20.1 [     0.026 s ]
408:          CMIN -34.32 CAVG  -2.98 CMAX  34.99
408:          LSD   0.00
408: [ 0,  1] MSE     2164.676 NV  54548 GM   -53.547 GN      19.7 [     0.017 s ]
408:          CMIN -34.32 CAVG  -2.98 CMAX  34.99
408:          LSD   1.00
408: [ 0,  2] MSE     2077.643 NV  54548 GM   -48.153 GN      18.1 [     0.013 s ]
408:          CMIN -34.32 CAVG  -2.98 CMAX  34.99
408:          LSD   5.00
408: [ 1,  3] MSE     1531.465 NV  54548 GM    -5.028 GN      6.72 [     0.017 s ]
408:          CMIN -34.32 CAVG  -2.97 CMAX  34.99
408:          LSD  49.50
408: [ 2,  4] MSE     1454.329 NV  54548 GM    33.264 GN      9.36 [     0.019 s ]
408:          CMIN -34.74 CAVG  -2.96 CMAX  34.99
408:          LSD  27.82
408: [ 3,  5] MSE     1285.873 NV  54548 GM    41.621 GN       9.3 [     0.016 s ]
408:          CMIN -38.62 CAVG  -2.96 CMAX  34.99
408:          LSD  33.32
408: [ 4,  6] MSE      601.694 NV  54548 GM   -58.120 GN      12.7 [     0.016 s ]
408:          CMIN -66.67 CAVG  -3.01 CMAX  47.45
408:          LSD 225.15
408: [ 5,  7] MSE      543.836 NV  54548 GM    31.901 GN      9.57 [     0.019 s ]
408:          CMIN -66.22 CAVG  -2.99 CMAX  59.99
408:          LSD  53.14
408: [ 6,  8] MSE      418.242 NV  54548 GM    12.804 GN      3.31 [     0.016 s ]
408:          CMIN -65.97 CAVG  -3.00 CMAX  53.84
408:          LSD  23.35
408: [ 7,  9] MSE      404.446 NV  54548 GM    -9.046 GN      2.82 [     0.018 s ]
408:          CMIN -67.92 CAVG  -3.00 CMAX  54.77
408:          LSD  12.26
408: [ 8, 10] MSE      385.397 NV  54548 GM    -5.940 GN      2.61 [     0.022 s ]
408:          CMIN -68.58 CAVG  -3.00 CMAX  55.54
408:          LSD   8.37
408: [ 9, 11] MSE      330.971 NV  54548 GM   -28.234 GN      4.05 [     0.015 s ]
408:          CMIN -72.02 CAVG  -3.01 CMAX  62.09
408:          LSD  44.90
408: [10, 12] MSE      292.026 NV  54548 GM    -5.908 GN      2.66 [     0.013 s ]
408:          CMIN -74.57 CAVG  -3.00 CMAX  67.66
408:          LSD  33.62
408: [11, 13] MSE      251.369 NV  54548 GM     4.024 GN      2.37 [     0.019 s ]
408:          CMIN -84.98 CAVG  -2.99 CMAX  73.83
408:          LSD  50.34
408: [12, 14] MSE      228.758 NV  54548 GM    11.643 GN      4.01 [     0.015 s ]
408:          CMIN -98.90 CAVG  -2.97 CMAX  76.10
408:          LSD  60.96
408: [13, 15] MSE      306.308 NV  54548 GM    49.796 GN      7.96 [     0.012 s ]
408:          CMIN -130.24 CAVG  -2.94 CMAX  83.22
408:          LSD 135.53
408: [13, 16] MSE      226.800 NV  54548 GM    20.941 GN      4.12 [     0.019 s ]
408:          CMIN -103.93 CAVG  -2.96 CMAX  76.84
408:          LSD  21.75
408: [14, 17] MSE      205.578 NV  54548 GM    24.444 GN       3.6 [     0.016 s ]
408:          CMIN -117.55 CAVG  -2.96 CMAX  78.37
408:          LSD  53.89
408: [15, 18] MSE      158.105 NV  54548 GM     6.383 GN      1.69 [     0.019 s ]
408:          CMIN -116.51 CAVG  -2.96 CMAX  72.95
408:          LSD  24.10
408: [16, 19] MSE      139.232 NV  54548 GM    -1.923 GN      1.28 [     0.016 s ]
408:          CMIN -119.83 CAVG  -2.96 CMAX  72.22
408:          LSD  15.80
408: [17, 20] MSE      119.453 NV  54548 GM    -6.009 GN      1.45 [     0.013 s ]
408:          CMIN -128.50 CAVG  -2.96 CMAX  71.16
408:          LSD  33.91
408: [2] xf_out->m_type = 9, xf_in->m_type = 9
408: Warping...
408: Running: plm_warp_native
408: Converting input image...
408: Converting xform...
408: bspline_xform_initialize
408: rdims = (10,10,10)
408: vox_per_rgn = (4,4,4)
408: cdims = (13 13 13)
408: ** Registration worker thread finished.
408: Creating output volume...
408: Running native warper...
408: bspline_warp complete.
408: Back convert to original type...
408: plm_warp_native is complete.
408: Saving image...
408: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd
408: Load:   0.055377
408: Run:    0.600687
408: Save:   0.0328369
408: Total:  0.688901
408: Finished!
408: 
408: STDERR: 
408: Not an error
138/571 Test #408: plm-reg-multi-b .......................   Passed    1.06 sec
test 432
        Start 432: plm-reg-autores-a

432: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
432: Test timeout computed to be: 1500
432: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
432: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.txt
432: EXPECTED_ERRNO is 
432: RETVAL: 0
432: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
432: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
432: Launching registration worker thread
432: Inside registration worker thread
432: Doing registration stage
432: [1] xf_in->m_type = 0, xf_out->m_type = 0
432: RESAMPLE 2 1: (3 3 3), (3 3 3)
432: RESAMPLE 2 1: (3 3 3), (3 3 3)
432: volume_calc_grad complete.
432: Computing grid search extent.
432: Dimension 0, mo=0.8 F=(-25, 51) M=(-25, 51)
432: Dimension 1, mo=0.8 F=(-25, 51) M=(-25, 51)
432: Dimension 2, mo=0.8 F=(-25, 51) M=(-25, 51)
432: Native grid search extent: (-10.2, 10.2), (-10.2, 10.2), (-10.2, 10.2)
432: [0 0 0] 17783.3 *
432: Global grid search
432: [-10.2 -10.2 -10.2] 92384.1
432: [-6.12 -10.2 -10.2] 83802.1
432: [-2.04 -10.2 -10.2] 69480.8
432: [2.04 -10.2 -10.2] 58333.1
432: [6.12 -10.2 -10.2] 54296.4
432: [10.2 -10.2 -10.2] 54999.5
432: [-10.2 -6.12 -10.2] 82405.6
432: [-6.12 -6.12 -10.2] 72624.1
432: [-2.04 -6.12 -10.2] 57400.6
432: [2.04 -6.12 -10.2] 44980.1
432: [6.12 -6.12 -10.2] 39080.6
432: [10.2 -6.12 -10.2] 38440
432: [-10.2 -2.04 -10.2] 74449.5
432: [-6.12 -2.04 -10.2] 64281.8
432: [-2.04 -2.04 -10.2] 49076.9
432: [2.04 -2.04 -10.2] 36415.9
432: [6.12 -2.04 -10.2] 29734.1
432: [10.2 -2.04 -10.2] 28403
432: [-10.2 2.04 -10.2] 74429.6
432: [-6.12 2.04 -10.2] 64267.5
432: [-2.04 2.04 -10.2] 49066.9
432: [2.04 2.04 -10.2] 36408.4
432: [6.12 2.04 -10.2] 29728.1
432: [10.2 2.04 -10.2] 28397.5
432: [-10.2 6.12 -10.2] 82364.6
432: [-6.12 6.12 -10.2] 72609.5
432: [-2.04 6.12 -10.2] 57395.9
432: [2.04 6.12 -10.2] 44976.1
432: [6.12 6.12 -10.2] 39078.9
432: [10.2 6.12 -10.2] 38440.1
432: [-10.2 10.2 -10.2] 92397.6
432: [-6.12 10.2 -10.2] 83916.7
432: [-2.04 10.2 -10.2] 69619.2
432: [2.04 10.2 -10.2] 58464.4
432: [6.12 10.2 -10.2] 54439.9
432: [10.2 10.2 -10.2] 55157.8
432: [-10.2 -10.2 -6.12] 82405.6
432: [-6.12 -10.2 -6.12] 72624.1
432: [-2.04 -10.2 -6.12] 57400.6
432: [2.04 -10.2 -6.12] 44980.1
432: [6.12 -10.2 -6.12] 39080.6
432: [10.2 -10.2 -6.12] 38440
432: [-10.2 -6.12 -6.12] 72448.6
432: [-6.12 -6.12 -6.12] 61337.3
432: [-2.04 -6.12 -6.12] 45076.3
432: [2.04 -6.12 -6.12] 31252.4
432: [6.12 -6.12 -6.12] 23367.4
432: [10.2 -6.12 -6.12] 21314.6
432: [-10.2 -2.04 -6.12] 64832.7
432: [-6.12 -2.04 -6.12] 53317.9
432: [-2.04 -2.04 -6.12] 37043.2
432: [2.04 -2.04 -6.12] 22959.6
432: [6.12 -2.04 -6.12] 14296.9 *
432: [10.2 -2.04 -6.12] 11566.7 *
432: [-10.2 2.04 -6.12] 64815.2
432: [-6.12 2.04 -6.12] 53306.1
432: [-2.04 2.04 -6.12] 37035.8
432: [2.04 2.04 -6.12] 22954.9
432: [6.12 2.04 -6.12] 14294.1
432: [10.2 2.04 -6.12] 11564.7 *
432: [-10.2 6.12 -6.12] 72412.3
432: [-6.12 6.12 -6.12] 61325.8
432: [-2.04 6.12 -6.12] 45074.1
432: [2.04 6.12 -6.12] 31250.7
432: [6.12 6.12 -6.12] 23367.9
432: [10.2 6.12 -6.12] 21317
432: [-10.2 10.2 -6.12] 82423.5
432: [-6.12 10.2 -6.12] 72736.2
432: [-2.04 10.2 -6.12] 57532.8
432: [2.04 10.2 -6.12] 45103.1
432: [6.12 10.2 -6.12] 39213.4
432: [10.2 10.2 -6.12] 38586
432: [-10.2 -10.2 -2.04] 74449.5
432: [-6.12 -10.2 -2.04] 64281.8
432: [-2.04 -10.2 -2.04] 49076.9
432: [2.04 -10.2 -2.04] 36415.9
432: [6.12 -10.2 -2.04] 29734.1
432: [10.2 -10.2 -2.04] 28403
432: [-10.2 -6.12 -2.04] 64832.7
432: [-6.12 -6.12 -2.04] 53317.9
432: [-2.04 -6.12 -2.04] 37043.2
432: [2.04 -6.12 -2.04] 22959.6
432: [6.12 -6.12 -2.04] 14296.9
432: [10.2 -6.12 -2.04] 11566.7
432: [-10.2 -2.04 -2.04] 57654.9
432: [-6.12 -2.04 -2.04] 45747.8
432: [-2.04 -2.04 -2.04] 29445.1
432: [2.04 -2.04 -2.04] 15101.1
432: [6.12 -2.04 -2.04] 5691.26 *
432: [10.2 -2.04 -2.04] 2314.87 *
432: [-10.2 2.04 -2.04] 57639
432: [-6.12 2.04 -2.04] 45737.4
432: [-2.04 2.04 -2.04] 29439
432: [2.04 2.04 -2.04] 15097.8
432: [6.12 2.04 -2.04] 5689.94
432: [10.2 2.04 -2.04] 2314.41 *
432: [-10.2 6.12 -2.04] 64797.7
432: [-6.12 6.12 -2.04] 53306.2
432: [-2.04 6.12 -2.04] 37040
432: [2.04 6.12 -2.04] 22956.8
432: [6.12 6.12 -2.04] 14296.1
432: [10.2 6.12 -2.04] 11567.5
432: [-10.2 10.2 -2.04] 74459.9
432: [-6.12 10.2 -2.04] 64378.9
432: [-2.04 10.2 -2.04] 49191.7
432: [2.04 10.2 -2.04] 36520.8
432: [6.12 10.2 -2.04] 29846.4
432: [10.2 10.2 -2.04] 28526.5
432: [-10.2 -10.2 2.04] 74429.6
432: [-6.12 -10.2 2.04] 64267.5
432: [-2.04 -10.2 2.04] 49066.9
432: [2.04 -10.2 2.04] 36408.4
432: [6.12 -10.2 2.04] 29728.1
432: [10.2 -10.2 2.04] 28397.6
432: [-10.2 -6.12 2.04] 64815.2
432: [-6.12 -6.12 2.04] 53306.1
432: [-2.04 -6.12 2.04] 37035.8
432: [2.04 -6.12 2.04] 22954.9
432: [6.12 -6.12 2.04] 14294.1
432: [10.2 -6.12 2.04] 11564.7
432: [-10.2 -2.04 2.04] 57639
432: [-6.12 -2.04 2.04] 45737.4
432: [-2.04 -2.04 2.04] 29439
432: [2.04 -2.04 2.04] 15097.8
432: [6.12 -2.04 2.04] 5689.94
432: [10.2 -2.04 2.04] 2314.41
432: [-10.2 2.04 2.04] 57623.1
432: [-6.12 2.04 2.04] 45727.1
432: [-2.04 2.04 2.04] 29432.9
432: [2.04 2.04 2.04] 15094.5
432: [6.12 2.04 2.04] 5688.65
432: [10.2 2.04 2.04] 2313.97 *
432: [-10.2 6.12 2.04] 64780.4
432: [-6.12 6.12 2.04] 53294.5
432: [-2.04 6.12 2.04] 37032.7
432: [2.04 6.12 2.04] 22952.3
432: [6.12 6.12 2.04] 14293.5
432: [10.2 6.12 2.04] 11565.7
432: [-10.2 10.2 2.04] 74440.3
432: [-6.12 10.2 2.04] 64365
432: [-2.04 10.2 2.04] 49182.1
432: [2.04 10.2 2.04] 36513.6
432: [6.12 10.2 2.04] 29840.9
432: [10.2 10.2 2.04] 28521.4
432: [-10.2 -10.2 6.12] 82364.6
432: [-6.12 -10.2 6.12] 72609.5
432: [-2.04 -10.2 6.12] 57395.9
432: [2.04 -10.2 6.12] 44976.1
432: [6.12 -10.2 6.12] 39078.9
432: [10.2 -10.2 6.12] 38440.1
432: [-10.2 -6.12 6.12] 72412.2
432: [-6.12 -6.12 6.12] 61325.8
432: [-2.04 -6.12 6.12] 45074.1
432: [2.04 -6.12 6.12] 31250.7
432: [6.12 -6.12 6.12] 23367.9
432: [10.2 -6.12 6.12] 21317
432: [-10.2 -2.04 6.12] 64797.7
432: [-6.12 -2.04 6.12] 53306.2
432: [-2.04 -2.04 6.12] 37040
432: [2.04 -2.04 6.12] 22956.8
432: [6.12 -2.04 6.12] 14296.1
432: [10.2 -2.04 6.12] 11567.5
432: [-10.2 2.04 6.12] 64780.3
432: [-6.12 2.04 6.12] 53294.5
432: [-2.04 2.04 6.12] 37032.7
432: [2.04 2.04 6.12] 22952.3
432: [6.12 2.04 6.12] 14293.5
432: [10.2 2.04 6.12] 11565.7
432: [-10.2 6.12 6.12] 72376.5
432: [-6.12 6.12 6.12] 61315
432: [-2.04 6.12 6.12] 45072.4
432: [2.04 6.12 6.12] 31249.7
432: [6.12 6.12 6.12] 23369.2
432: [10.2 6.12 6.12] 21320.2
432: [-10.2 10.2 6.12] 82385
432: [-6.12 10.2 6.12] 72724.1
432: [-2.04 10.2 6.12] 57530.6
432: [2.04 10.2 6.12] 45101.8
432: [6.12 10.2 6.12] 39214.6
432: [10.2 10.2 6.12] 38589.1
432: [-10.2 -10.2 10.2] 92397.6
432: [-6.12 -10.2 10.2] 83916.7
432: [-2.04 -10.2 10.2] 69619.2
432: [2.04 -10.2 10.2] 58464.4
432: [6.12 -10.2 10.2] 54439.9
432: [10.2 -10.2 10.2] 55157.8
432: [-10.2 -6.12 10.2] 82423.5
432: [-6.12 -6.12 10.2] 72736.1
432: [-2.04 -6.12 10.2] 57532.8
432: [2.04 -6.12 10.2] 45103.1
432: [6.12 -6.12 10.2] 39213.4
432: [10.2 -6.12 10.2] 38586
432: [-10.2 -2.04 10.2] 74459.9
432: [-6.12 -2.04 10.2] 64378.9
432: [-2.04 -2.04 10.2] 49191.7
432: [2.04 -2.04 10.2] 36520.8
432: [6.12 -2.04 10.2] 29846.4
432: [10.2 -2.04 10.2] 28526.5
432: [-10.2 2.04 10.2] 74440.3
432: [-6.12 2.04 10.2] 64365
432: [-2.04 2.04 10.2] 49182.1
432: [2.04 2.04 10.2] 36513.6
432: [6.12 2.04 10.2] 29840.9
432: [10.2 2.04 10.2] 28521.4
432: [-10.2 6.12 10.2] 82385
432: [-6.12 6.12 10.2] 72724.1
432: [-2.04 6.12 10.2] 57530.6
432: [2.04 6.12 10.2] 45101.8
432: [6.12 6.12 10.2] 39214.6
432: [10.2 6.12 10.2] 38589.1
432: [-10.2 10.2 10.2] 92421.5
432: [-6.12 10.2 10.2] 84042.5
432: [-2.04 10.2 10.2] 69768.6
432: [2.04 10.2 10.2] 58606.7
432: [6.12 10.2 10.2] 54595.3
432: [10.2 10.2 10.2] 55328.8
432: [2] xf_out->m_type = 1, xf_in->m_type = 0
432: ** Registration worker thread finished.
432: Warping...
432: plm_warp_itk: xform_to_itk_vf
432: plm_warp_itk: convert_to_itk
432: plm_warp_itk: warping...
432: Saving image...
432: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha
432: Load:   0.029155
432: Run:    0.0974958
432: Save:   0.00436091
432: Total:  0.131012
432: Finished!
432: 
432: STDERR: 
432: Not an error
139/571 Test #432: plm-reg-autores-a .....................   Passed    0.31 sec
test 435
        Start 435: plm-reg-autores-b

435: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
435: Test timeout computed to be: 1500
435: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
435: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.txt
435: EXPECTED_ERRNO is 
423: RETVAL: 0
423: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
423: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
423: Launching registration worker thread
423: Inside registration worker thread
423: Doing registration stage
423: [1] xf_in->m_type = 0, xf_out->m_type = 0
423: RESAMPLE 1 1: (1 1 1), (1 1 1)
423: RESAMPLE 1 1: (1 1 1), (1 1 1)
423: volume_calc_grad complete.
423: Computing grid search extent.
423: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50)
423: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50)
423: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50)
423: Native grid search extent: (-10, 10), (-10, 10), (-10, 10)
423: [0 0 0] 18945.9 *
423: Global grid search
423: [-10 -10 -10] 109949
423: [-6 -10 -10] 96800
423: [-2 -10 -10] 79011.9
423: [2 -10 -10] 66244.1
423: [6 -10 -10] 61932.6
423: [10 -10 -10] 63642.7
423: [-10 -6 -10] 95633.9
423: [-6 -6 -10] 81703.4
423: [-2 -6 -10] 63642.4
423: [2 -6 -10] 49838.6
423: [6 -6 -10] 43366.8
423: [10 -6 -10] 43154
423: [-10 -2 -10] 84842.6
423: [-6 -2 -10] 71049.9
423: [-2 -2 -10] 53542.3
423: [2 -2 -10] 39751
423: [6 -2 -10] 32450.7
423: [10 -2 -10] 31286.8
423: [-10 2 -10] 84829.9
423: [-6 2 -10] 71041.2
423: [-2 2 -10] 53536.6
423: [2 2 -10] 39746.7
423: [6 2 -10] 32446.9
423: [10 2 -10] 31283.5
423: [-10 6 -10] 95561.4
423: [-6 6 -10] 81658.4
423: [-2 6 -10] 63613.3
423: [2 6 -10] 49813.8
423: [6 6 -10] 43342.5
423: [10 6 -10] 43131.5
423: [-10 10 -10] 109668
423: [-6 10 -10] 96633.8
423: [-2 10 -10] 78907
423: [2 10 -10] 66152.1
423: [6 10 -10] 61839.3
423: [10 10 -10] 63556.7
423: [-10 -10 -6] 95633.9
423: [-6 -10 -6] 81703.4
423: [-2 -10 -6] 63642.4
423: [2 -10 -6] 49838.6
423: [6 -10 -6] 43366.8
423: [10 -10 -6] 43154
423: [-10 -6 -6] 82028.8
423: [-6 -6 -6] 67247.9
423: [-2 -6 -6] 48818.3
423: [2 -6 -6] 33916.9
423: [6 -6 -6] 25278
423: [10 -6 -6] 23165.8
423: [-10 -2 -6] 72112.1
423: [-6 -2 -6] 57467.9
423: [-2 -2 -6] 39558.4
423: [2 -2 -6] 24681.2
423: [6 -2 -6] 15293.3 *
423: [10 -2 -6] 12314.7 *
423: [-10 2 -6] 72100.9
423: [-6 2 -6] 57460.6
423: [-2 2 -6] 39554
423: [2 2 -6] 24678.2
423: [6 2 -6] 15291.1
423: [10 2 -6] 12313 *
423: [-10 6 -6] 81963.5
423: [-6 6 -6] 67208.4
423: [-2 6 -6] 48793.6
423: [2 6 -6] 33896.7
423: [6 6 -6] 25258.7
423: [10 6 -6] 23148.6
423: [-10 10 -6] 95379.4
423: [-6 10 -6] 81554.8
423: [-2 10 -6] 63550.9
423: [2 10 -6] 49759.6
423: [6 10 -6] 43287.7
423: [10 10 -6] 43082.4
423: [-10 -10 -2] 84842.6
423: [-6 -10 -2] 71049.9
423: [-2 -10 -2] 53542.3
423: [2 -10 -2] 39751
423: [6 -10 -2] 32450.7
423: [10 -10 -2] 31286.8
423: [-10 -6 -2] 72112.1
423: [-6 -6 -2] 57467.9
423: [-2 -6 -2] 39558.4
423: [2 -6 -2] 24681.2
423: [6 -6 -2] 15293.3
423: [10 -6 -2] 12314.7
423: [-10 -2 -2] 63010.9
423: [-6 -2 -2] 48498.1
423: [-2 -2 -2] 31072.4
423: [2 -2 -2] 16224.1
423: [6 -2 -2] 6155.79 *
423: [10 -2 -2] 2386.22 *
423: [-10 2 -2] 63000.9
423: [-6 2 -2] 48491.8
423: [-2 2 -2] 31068.8
423: [2 2 -2] 16221.9
423: [6 2 -2] 6154.44
423: [10 2 -2] 2385.44 *
423: [-10 6 -2] 72052.8
423: [-6 6 -2] 57432.4
423: [-2 6 -2] 39536.8
423: [2 6 -2] 24663.8
423: [6 6 -2] 15277.1
423: [10 6 -2] 12300.5
423: [-10 10 -2] 84610.1
423: [-6 10 -2] 70915.1
423: [-2 10 -2] 53460.4
423: [2 10 -2] 39681
423: [6 10 -2] 32381
423: [10 10 -2] 31224.4
423: [-10 -10 2] 84829.9
423: [-6 -10 2] 71041.2
423: [-2 -10 2] 53536.6
423: [2 -10 2] 39746.7
423: [6 -10 2] 32446.9
423: [10 -10 2] 31283.5
423: [-10 -6 2] 72100.9
423: [-6 -6 2] 57460.6
423: [-2 -6 2] 39554
423: [2 -6 2] 24678.2
423: [6 -6 2] 15291.1
423: [10 -6 2] 12313
423: [-10 -2 2] 63000.9
423: [-6 -2 2] 48491.8
423: [-2 -2 2] 31068.8
423: [2 -2 2] 16221.9
423: [6 -2 2] 6154.44
423: [10 -2 2] 2385.44
423: [-10 2 2] 62990.9
423: [-6 2 2] 48485.5
423: [-2 2 2] 31065.2
423: [2 2 2] 16219.7
423: [6 2 2] 6153.1
423: [10 2 2] 2384.66 *
423: [-10 6 2] 72041.7
423: [-6 6 2] 57425.2
423: [-2 6 2] 39532.4
423: [2 6 2] 24660.8
423: [6 6 2] 15274.9
423: [10 6 2] 12298.9
423: [-10 10 2] 84597.7
423: [-6 10 2] 70906.7
423: [-2 10 2] 53454.9
423: [2 10 2] 39676.9
423: [6 10 2] 32377.5
423: [10 10 2] 31221.4
423: [-10 -10 6] 95561.4
423: [-6 -10 6] 81658.4
423: [-2 -10 6] 63613.3
423: [2 -10 6] 49813.8
423: [6 -10 6] 43342.5
423: [10 -10 6] 43131.5
423: [-10 -6 6] 81963.5
423: [-6 -6 6] 67208.4
423: [-2 -6 6] 48793.6
423: [2 -6 6] 33896.7
423: [6 -6 6] 25258.7
423: [10 -6 6] 23148.6
423: [-10 -2 6] 72052.8
423: [-6 -2 6] 57432.4
423: [-2 -2 6] 39536.8
423: [2 -2 6] 24663.8
423: [6 -2 6] 15277.1
423: [10 -2 6] 12300.5
423: [-10 2 6] 72041.7
423: [-6 2 6] 57425.2
423: [-2 2 6] 39532.4
423: [2 2 6] 24660.8
423: [6 2 6] 15274.9
423: [10 2 6] 12298.9
423: [-10 6 6] 81898.9
423: [-6 6 6] 67169.4
423: [-2 6 6] 48769.5
423: [2 6 6] 33876.9
423: [6 6 6] 25240
423: [10 6 6] 23132
423: [-10 10 6] 95309.5
423: [-6 10 6] 81512.3
423: [-2 10 6] 63524.1
423: [2 10 6] 49737.2
423: [6 10 6] 43266
423: [10 10 6] 43062.8
423: [-10 -10 10] 109668
423: [-6 -10 10] 96633.8
423: [-2 -10 10] 78907
423: [2 -10 10] 66152.1
423: [6 -10 10] 61839.3
423: [10 -10 10] 63556.7
423: [-10 -6 10] 95379.4
423: [-6 -6 10] 81554.8
423: [-2 -6 10] 63550.9
423: [2 -6 10] 49759.6
423: [6 -6 10] 43287.7
423: [10 -6 10] 43082.4
423: [-10 -2 10] 84610.1
423: [-6 -2 10] 70915.1
423: [-2 -2 10] 53460.4
423: [2 -2 10] 39681
423: [6 -2 10] 32381
423: [10 -2 10] 31224.4
423: [-10 2 10] 84597.7
423: [-6 2 10] 70906.7
423: [-2 2 10] 53454.9
423: [2 2 10] 39676.9
423: [6 2 10] 32377.5
423: [10 2 10] 31221.4
423: [-10 6 10] 95309.5
423: [-6 6 10] 81512.3
423: [-2 6 10] 63524.1
423: [2 6 10] 49737.2
423: [6 6 10] 43266
423: [10 6 10] 43062.8
423: [-10 10 10] 109399
423: [-6 10 10] 96478.4
423: [-2 10 10] 78812.5
423: [2 10 10] 66070.4
423: [6 10 10] 61757.4
423: [10 10 10] 63483
423: [2] xf_out->m_type = 1, xf_in->m_type = 0
423: [1] xf_in->m_type = 1, xf_out->m_type = 0
423: RESAMPLE 1 1: (1 1 1), (1 1 1)
423: RESAMPLE 1 1: (1 1 1), (1 1 1)
423: volume_calc_grad complete.
423: Computing grid search extent.
423: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50)
423: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50)
423: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50)
423: Native grid search extent: (-10, 10), (-10, 10), (-10, 10)
423: [10 2 2] 2384.66 *
423: Local grid search
423: [6.4 -1.6 -1.6] 4439.65
423: [8.8 -1.6 -1.6] 1771.35 *
423: [11.2 -1.6 -1.6] 1856.67
423: [13.6 -1.6 -1.6] 4787.36
423: [6.4 0.8 -1.6] 3954.1
423: [8.8 0.8 -1.6] 1244.73 *
423: [11.2 0.8 -1.6] 1300.61
423: [13.6 0.8 -1.6] 4226.79
423: [6.4 3.2 -1.6] 6520.93
423: [8.8 3.2 -1.6] 3949.58
423: [11.2 3.2 -1.6] 4155.43
423: [13.6 3.2 -1.6] 7178.92
423: [6.4 5.6 -1.6] 12337.8
423: [8.8 5.6 -1.6] 10089.9
423: [11.2 5.6 -1.6] 10636.9
423: [13.6 5.6 -1.6] 13872
423: [6.4 -1.6 0.8] 3954.1
423: [8.8 -1.6 0.8] 1244.73 *
423: [11.2 -1.6 0.8] 1300.61
423: [13.6 -1.6 0.8] 4226.79
423: [6.4 0.8 0.8] 3466.53
423: [8.8 0.8 0.8] 715.907 *
423: [11.2 0.8 0.8] 742.224
423: [13.6 0.8 0.8] 3663.89
423: [6.4 3.2 0.8] 6031.02
423: [8.8 3.2 0.8] 3418.24
423: [11.2 3.2 0.8] 3594.38
423: [13.6 3.2 0.8] 6613.31
423: [6.4 5.6 0.8] 11844.3
423: [8.8 5.6 0.8] 9554.72
423: [11.2 5.6 0.8] 10071.8
423: [13.6 5.6 0.8] 13302.2
423: [6.4 -1.6 3.2] 6520.93
423: [8.8 -1.6 3.2] 3949.58
423: [11.2 -1.6 3.2] 4155.43
423: [13.6 -1.6 3.2] 7178.92
423: [6.4 0.8 3.2] 6031.02
423: [8.8 0.8 3.2] 3418.24
423: [11.2 0.8 3.2] 3594.38
423: [13.6 0.8 3.2] 6613.31
423: [6.4 3.2 3.2] 8673.76
423: [8.8 3.2 3.2] 6203.3
423: [11.2 3.2 3.2] 6533.85
423: [13.6 3.2 3.2] 9652.77
423: [6.4 5.6 3.2] 14655.7
423: [8.8 5.6 3.2] 12518.1
423: [11.2 5.6 3.2] 13199.5
423: [13.6 5.6 3.2] 16535.7
423: [6.4 -1.6 5.6] 12337.8
423: [8.8 -1.6 5.6] 10089.9
423: [11.2 -1.6 5.6] 10636.9
423: [13.6 -1.6 5.6] 13872
423: [6.4 0.8 5.6] 11844.3
423: [8.8 0.8 5.6] 9554.72
423: [11.2 0.8 5.6] 10071.8
423: [13.6 0.8 5.6] 13302.2
423: [6.4 3.2 5.6] 14655.7
423: [8.8 3.2 5.6] 12518.1
423: [11.2 3.2 5.6] 13199.5
423: [13.6 3.2 5.6] 16535.7
423: [6.4 5.6 5.6] 20999.9
423: [8.8 5.6 5.6] 19216
423: [11.2 5.6 5.6] 20269.6
423: [13.6 5.6 5.6] 23835.8
423: [2] xf_out->m_type = 1, xf_in->m_type = 1
423: ** Registration worker thread finished.
423: Warping...
423: plm_warp_itk: xform_to_itk_vf
423: plm_warp_itk: convert_to_itk
423: plm_warp_itk: warping...
423: Saving image...
423: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha
423: Load:   0.0481851
423: Run:    0.596302
423: Save:   0.00735998
423: Total:  0.651847
423: Finished!
423: 
423: STDERR: 
435: RETVAL: 0
435: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
435: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
435: Launching registration worker thread
435: Inside registration worker thread
435: Doing registration stage
435: [1] xf_in->m_type = 0, xf_out->m_type = 0
435: RESAMPLE 3 1: (0.5 0.5 0.5), (0.5 0.5 0.5)
435: RESAMPLE 3 1: (0.5 0.5 0.5), (0.5 0.5 0.5)
435: volume_calc_grad complete.
435: Computing grid search extent.
435: Dimension 0, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465)
435: Dimension 1, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465)
435: Dimension 2, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465)
435: Native grid search extent: (-10.2493, 10.2493), (-10.2493, 10.2493), (-10.2493, 10.2493)
435: [0 0 0] 17568.3 *
435: Global grid search
435: [-10.2493 -10.2493 -10.2493] 102040
435: [-6.14958 -10.2493 -10.2493] 87035.1
435: [-2.04986 -10.2493 -10.2493] 73504.3
435: [2.04986 -10.2493 -10.2493] 61973.2
435: [6.14958 -10.2493 -10.2493] 57083.1
435: [10.2493 -10.2493 -10.2493] 60324.8
435: [-10.2493 -6.14958 -10.2493] 86358.6
435: [-6.14958 -6.14958 -10.2493] 71329.7
435: [-2.04986 -6.14958 -10.2493] 57402.6
435: [2.04986 -6.14958 -10.2493] 45155
435: [6.14958 -6.14958 -10.2493] 38807.6
435: [10.2493 -6.14958 -10.2493] 39786.3
435: [-10.2493 -2.04986 -10.2493] 79223.6
435: [-6.14958 -2.04986 -10.2493] 64102
435: [-2.04986 -2.04986 -10.2493] 49890.5
435: [2.04986 -2.04986 -10.2493] 37200.4
435: [6.14958 -2.04986 -10.2493] 30089.3
435: [10.2493 -2.04986 -10.2493] 29962.9
435: [-10.2493 2.04986 -10.2493] 79216.3
435: [-6.14958 2.04986 -10.2493] 64097.4
435: [-2.04986 2.04986 -10.2493] 49887.5
435: [2.04986 2.04986 -10.2493] 37198.2
435: [6.14958 2.04986 -10.2493] 30087.7
435: [10.2493 2.04986 -10.2493] 29961.4
435: [-10.2493 6.14958 -10.2493] 86370.3
435: [-6.14958 6.14958 -10.2493] 71349.9
435: [-2.04986 6.14958 -10.2493] 57424.9
435: [2.04986 6.14958 -10.2493] 45174.8
435: [6.14958 6.14958 -10.2493] 38826.9
435: [10.2493 6.14958 -10.2493] 39808.1
435: [-10.2493 10.2493 -10.2493] 101908
435: [-6.14958 10.2493 -10.2493] 86978.3
435: [-2.04986 10.2493 -10.2493] 73484.1
435: [2.04986 10.2493 -10.2493] 61959.1
435: [6.14958 10.2493 -10.2493] 57074.3
435: [10.2493 10.2493 -10.2493] 60322.2
435: [-10.2493 -10.2493 -6.14958] 86358.6
435: [-6.14958 -10.2493 -6.14958] 71329.7
435: [-2.04986 -10.2493 -6.14958] 57402.6
435: [2.04986 -10.2493 -6.14958] 45155
435: [6.14958 -10.2493 -6.14958] 38807.6
435: [10.2493 -10.2493 -6.14958] 39786.3
435: [-10.2493 -6.14958 -6.14958] 72037.7
435: [-6.14958 -6.14958 -6.14958] 56910.4
435: [-2.04986 -6.14958 -6.14958] 42538.4
435: [2.04986 -6.14958 -6.14958] 29552
435: [6.14958 -6.14958 -6.14958] 21798.9
435: [10.2493 -6.14958 -6.14958] 20651.8
435: [-10.2493 -2.04986 -6.14958] 65471
435: [-6.14958 -2.04986 -6.14958] 50210.2
435: [-2.04986 -2.04986 -6.14958] 35524.7
435: [2.04986 -2.04986 -6.14958] 22079
435: [6.14958 -2.04986 -6.14958] 13577.1 *
435: [10.2493 -2.04986 -6.14958] 11376 *
435: [-10.2493 2.04986 -6.14958] 65464.7
435: [-6.14958 2.04986 -6.14958] 50206.4
435: [-2.04986 2.04986 -6.14958] 35522.4
435: [2.04986 2.04986 -6.14958] 22077.6
435: [6.14958 2.04986 -6.14958] 13576.2
435: [10.2493 2.04986 -6.14958] 11375.4 *
435: [-10.2493 6.14958 -6.14958] 72046.3
435: [-6.14958 6.14958 -6.14958] 56926.2
435: [-2.04986 6.14958 -6.14958] 42555.4
435: [2.04986 6.14958 -6.14958] 29566.2
435: [6.14958 6.14958 -6.14958] 21812
435: [10.2493 6.14958 -6.14958] 20666.5
435: [-10.2493 10.2493 -6.14958] 86238.7
435: [-6.14958 10.2493 -6.14958] 71277.5
435: [-2.04986 10.2493 -6.14958] 57383.1
435: [2.04986 10.2493 -6.14958] 45141
435: [6.14958 10.2493 -6.14958] 38798.2
435: [10.2493 10.2493 -6.14958] 39782.4
435: [-10.2493 -10.2493 -2.04986] 79223.6
435: [-6.14958 -10.2493 -2.04986] 64102
435: [-2.04986 -10.2493 -2.04986] 49890.5
435: [2.04986 -10.2493 -2.04986] 37200.4
435: [6.14958 -10.2493 -2.04986] 30089.3
435: [10.2493 -10.2493 -2.04986] 29962.9
435: [-10.2493 -6.14958 -2.04986] 65471
435: [-6.14958 -6.14958 -2.04986] 50210.2
435: [-2.04986 -6.14958 -2.04986] 35524.7
435: [2.04986 -6.14958 -2.04986] 22079
435: [6.14958 -6.14958 -2.04986] 13577.1
435: [10.2493 -6.14958 -2.04986] 11376
435: [-10.2493 -2.04986 -2.04986] 59138.3
435: [-6.14958 -2.04986 -2.04986] 43721.4
435: [-2.04986 -2.04986 -2.04986] 28705.1
435: [2.04986 -2.04986 -2.04986] 14788.4
435: [6.14958 -2.04986 -2.04986] 5539.07 *
435: [10.2493 -2.04986 -2.04986] 2301.37 *
435: [-10.2493 2.04986 -2.04986] 59132.6
435: [-6.14958 2.04986 -2.04986] 43718
435: [-2.04986 2.04986 -2.04986] 28703.3
435: [2.04986 2.04986 -2.04986] 14787.4
435: [6.14958 2.04986 -2.04986] 5538.67
435: [10.2493 2.04986 -2.04986] 2301.27 *
435: [-10.2493 6.14958 -2.04986] 65478.6
435: [-6.14958 6.14958 -2.04986] 50224.3
435: [-2.04986 6.14958 -2.04986] 35539.7
435: [2.04986 6.14958 -2.04986] 22091
435: [6.14958 6.14958 -2.04986] 13587.7
435: [10.2493 6.14958 -2.04986] 11387.8
435: [-10.2493 10.2493 -2.04986] 79111.5
435: [-6.14958 10.2493 -2.04986] 64054.3
435: [-2.04986 10.2493 -2.04986] 49873.8
435: [2.04986 10.2493 -2.04986] 37188.9
435: [6.14958 10.2493 -2.04986] 30082.5
435: [10.2493 10.2493 -2.04986] 29961.4
435: [-10.2493 -10.2493 2.04986] 79216.3
435: [-6.14958 -10.2493 2.04986] 64097.4
435: [-2.04986 -10.2493 2.04986] 49887.5
435: [2.04986 -10.2493 2.04986] 37198.2
435: [6.14958 -10.2493 2.04986] 30087.7
435: [10.2493 -10.2493 2.04986] 29961.4
435: [-10.2493 -6.14958 2.04986] 65464.7
435: [-6.14958 -6.14958 2.04986] 50206.4
435: [-2.04986 -6.14958 2.04986] 35522.4
435: [2.04986 -6.14958 2.04986] 22077.6
435: [6.14958 -6.14958 2.04986] 13576.2
435: [10.2493 -6.14958 2.04986] 11375.4
435: [-10.2493 -2.04986 2.04986] 59132.6
435: [-6.14958 -2.04986 2.04986] 43718
435: [-2.04986 -2.04986 2.04986] 28703.3
435: [2.04986 -2.04986 2.04986] 14787.4
435: [6.14958 -2.04986 2.04986] 5538.67
435: [10.2493 -2.04986 2.04986] 2301.27 *
435: [-10.2493 2.04986 2.04986] 59126.8
435: [-6.14958 2.04986 2.04986] 43714.7
435: [-2.04986 2.04986 2.04986] 28701.5
435: [2.04986 2.04986 2.04986] 14786.4
435: [6.14958 2.04986 2.04986] 5538.27
435: [10.2493 2.04986 2.04986] 2301.18 *
435: [-10.2493 6.14958 2.04986] 65472.3
435: [-6.14958 6.14958 2.04986] 50220.5
435: [-2.04986 6.14958 2.04986] 35537.5
435: [2.04986 6.14958 2.04986] 22089.6
435: [6.14958 6.14958 2.04986] 13586.9
435: [10.2493 6.14958 2.04986] 11387.2
435: [-10.2493 10.2493 2.04986] 79104.4
435: [-6.14958 10.2493 2.04986] 64049.8
435: [-2.04986 10.2493 2.04986] 49870.9
435: [2.04986 10.2493 2.04986] 37186.9
435: [6.14958 10.2493 2.04986] 30080.9
435: [10.2493 10.2493 2.04986] 29960.1
435: [-10.2493 -10.2493 6.14958] 86370.3
435: [-6.14958 -10.2493 6.14958] 71349.9
435: [-2.04986 -10.2493 6.14958] 57424.9
435: [2.04986 -10.2493 6.14958] 45174.8
435: [6.14958 -10.2493 6.14958] 38826.9
435: [10.2493 -10.2493 6.14958] 39808.1
435: [-10.2493 -6.14958 6.14958] 72046.3
435: [-6.14958 -6.14958 6.14958] 56926.2
435: [-2.04986 -6.14958 6.14958] 42555.4
435: [2.04986 -6.14958 6.14958] 29566.2
435: [6.14958 -6.14958 6.14958] 21812
435: [10.2493 -6.14958 6.14958] 20666.5
435: [-10.2493 -2.04986 6.14958] 65478.6
435: [-6.14958 -2.04986 6.14958] 50224.3
435: [-2.04986 -2.04986 6.14958] 35539.7
435: [2.04986 -2.04986 6.14958] 22091
435: [6.14958 -2.04986 6.14958] 13587.7
435: [10.2493 -2.04986 6.14958] 11387.8
435: [-10.2493 2.04986 6.14958] 65472.4
435: [-6.14958 2.04986 6.14958] 50220.5
435: [-2.04986 2.04986 6.14958] 35537.5
435: [2.04986 2.04986 6.14958] 22089.6
435: [6.14958 2.04986 6.14958] 13586.9
435: [10.2493 2.04986 6.14958] 11387.2
435: [-10.2493 6.14958 6.14958] 72055.1
435: [-6.14958 6.14958 6.14958] 56942.1
435: [-2.04986 6.14958 6.14958] 42572.7
435: [2.04986 6.14958 6.14958] 29580.5
435: [6.14958 6.14958 6.14958] 21825.4
435: [10.2493 6.14958 6.14958] 20681.4
435: [-10.2493 10.2493 6.14958] 86251.4
435: [-6.14958 10.2493 6.14958] 71298.8
435: [-2.04986 10.2493 6.14958] 57406.5
435: [2.04986 10.2493 6.14958] 45161.9
435: [6.14958 10.2493 6.14958] 38818.7
435: [10.2493 10.2493 6.14958] 39805.5
435: [-10.2493 -10.2493 10.2493] 101908
435: [-6.14958 -10.2493 10.2493] 86978.3
435: [-2.04986 -10.2493 10.2493] 73484.1
435: [2.04986 -10.2493 10.2493] 61959.1
435: [6.14958 -10.2493 10.2493] 57074.3
435: [10.2493 -10.2493 10.2493] 60322.2
435: [-10.2493 -6.14958 10.2493] 86238.7
435: [-6.14958 -6.14958 10.2493] 71277.5
435: [-2.04986 -6.14958 10.2493] 57383.1
435: [2.04986 -6.14958 10.2493] 45141
435: [6.14958 -6.14958 10.2493] 38798.2
435: [10.2493 -6.14958 10.2493] 39782.4
435: [-10.2493 -2.04986 10.2493] 79111.5
435: [-6.14958 -2.04986 10.2493] 64054.3
435: [-2.04986 -2.04986 10.2493] 49873.8
435: [2.04986 -2.04986 10.2493] 37188.9
435: [6.14958 -2.04986 10.2493] 30082.5
435: [10.2493 -2.04986 10.2493] 29961.4
435: [-10.2493 2.04986 10.2493] 79104.4
435: [-6.14958 2.04986 10.2493] 64049.8
435: [-2.04986 2.04986 10.2493] 49870.9
435: [2.04986 2.04986 10.2493] 37186.9
435: [6.14958 2.04986 10.2493] 30081
435: [10.2493 2.04986 10.2493] 29960.1
435: [-10.2493 6.14958 10.2493] 86251.4
435: [-6.14958 6.14958 10.2493] 71298.8
435: [-2.04986 6.14958 10.2493] 57406.5
435: [2.04986 6.14958 10.2493] 45161.9
435: [6.14958 6.14958 10.2493] 38818.7
435: [10.2493 6.14958 10.2493] 39805.5
435: [-10.2493 10.2493 10.2493] 101782
435: [-6.14958 10.2493 10.2493] 86927.9
435: [-2.04986 10.2493 10.2493] 73469.9
435: [2.04986 10.2493 10.2493] 61951.1
435: [6.14958 10.2493 10.2493] 57072
435: [10.2493 10.2493 10.2493] 60327
435: [2] xf_out->m_type = 1, xf_in->m_type = 0
435: ** Registration worker thread finished.
435: Warping...
435: plm_warp_itk: xform_to_itk_vf
435: plm_warp_itk: convert_to_itk
435: plm_warp_itk: warping...
435: Saving image...
435: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha
435: Load:   0.0428309
435: Run:    0.108369
435: Save:   0.00603914
435: Total:  0.157239
435: Finished!
435: 
435: STDERR: 
423: Not an error
140/571 Test #423: plm-reg-trans-a .......................   Passed    1.04 sec
test 440
        Start 440: plm-compose-a

440: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-xf.txt;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
440: Test timeout computed to be: 1500
440: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
440: PARMS is compose;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-xf.txt;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha
440: EXPECTED_ERRNO is 
435: Not an error
141/571 Test #435: plm-reg-autores-b .....................   Passed    0.48 sec
test 444
        Start 444: plm-compose-b

444: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
444: Test timeout computed to be: 1500
444: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
444: PARMS is compose;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha
444: EXPECTED_ERRNO is 
444: RETVAL: 0
444: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha
444: Finished!
444: 
444: STDERR: 
440: RETVAL: 0
440: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha
440: Finished!
440: 
440: STDERR: 
426: RETVAL: 0
426: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
426: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
426: Launching registration worker thread
426: Inside registration worker thread
426: Doing registration stage
426: [1] xf_in->m_type = 0, xf_out->m_type = 0
426: RESAMPLE 1 1: (1 1 1), (1 1 1)
426: RESAMPLE 1 1: (1 1 1), (1 1 1)
426: volume_calc_grad complete.
426: Computing grid search extent.
426: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50)
426: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50)
426: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50)
426: Native grid search extent: (-10, 10), (-10, 10), (-10, 10)
426: [0 0 0] 18945.9 *
426: Global grid search
426: [-10 -10 -10] 109949
426: [-6 -10 -10] 96800
426: [-2 -10 -10] 79011.9
426: [2 -10 -10] 66244.1
426: [6 -10 -10] 61932.6
426: [10 -10 -10] 63642.7
426: [-10 -6 -10] 95633.9
426: [-6 -6 -10] 81703.4
426: [-2 -6 -10] 63642.4
426: [2 -6 -10] 49838.6
426: [6 -6 -10] 43366.8
426: [10 -6 -10] 43154
426: [-10 -2 -10] 84842.6
426: [-6 -2 -10] 71049.9
426: [-2 -2 -10] 53542.3
426: [2 -2 -10] 39751
426: [6 -2 -10] 32450.7
426: [10 -2 -10] 31286.8
426: [-10 2 -10] 84829.9
426: [-6 2 -10] 71041.2
426: [-2 2 -10] 53536.6
426: [2 2 -10] 39746.7
426: [6 2 -10] 32446.9
426: [10 2 -10] 31283.5
426: [-10 6 -10] 95561.4
426: [-6 6 -10] 81658.4
426: [-2 6 -10] 63613.3
426: [2 6 -10] 49813.8
426: [6 6 -10] 43342.5
426: [10 6 -10] 43131.5
426: [-10 10 -10] 109668
426: [-6 10 -10] 96633.8
426: [-2 10 -10] 78907
426: [2 10 -10] 66152.1
426: [6 10 -10] 61839.3
426: [10 10 -10] 63556.7
426: [-10 -10 -6] 95633.9
426: [-6 -10 -6] 81703.4
426: [-2 -10 -6] 63642.4
426: [2 -10 -6] 49838.6
426: [6 -10 -6] 43366.8
426: [10 -10 -6] 43154
426: [-10 -6 -6] 82028.8
426: [-6 -6 -6] 67247.9
426: [-2 -6 -6] 48818.3
426: [2 -6 -6] 33916.9
426: [6 -6 -6] 25278
426: [10 -6 -6] 23165.8
426: [-10 -2 -6] 72112.1
426: [-6 -2 -6] 57467.9
426: [-2 -2 -6] 39558.4
426: [2 -2 -6] 24681.2
426: [6 -2 -6] 15293.3 *
426: [10 -2 -6] 12314.7 *
426: [-10 2 -6] 72100.9
426: [-6 2 -6] 57460.6
426: [-2 2 -6] 39554
426: [2 2 -6] 24678.2
426: [6 2 -6] 15291.1
426: [10 2 -6] 12313 *
426: [-10 6 -6] 81963.5
426: [-6 6 -6] 67208.4
426: [-2 6 -6] 48793.6
426: [2 6 -6] 33896.7
426: [6 6 -6] 25258.7
426: [10 6 -6] 23148.6
426: [-10 10 -6] 95379.4
426: [-6 10 -6] 81554.8
426: [-2 10 -6] 63550.9
426: [2 10 -6] 49759.6
426: [6 10 -6] 43287.7
426: [10 10 -6] 43082.4
426: [-10 -10 -2] 84842.6
426: [-6 -10 -2] 71049.9
426: [-2 -10 -2] 53542.3
426: [2 -10 -2] 39751
426: [6 -10 -2] 32450.7
426: [10 -10 -2] 31286.8
426: [-10 -6 -2] 72112.1
426: [-6 -6 -2] 57467.9
426: [-2 -6 -2] 39558.4
426: [2 -6 -2] 24681.2
426: [6 -6 -2] 15293.3
426: [10 -6 -2] 12314.7
426: [-10 -2 -2] 63010.9
426: [-6 -2 -2] 48498.1
426: [-2 -2 -2] 31072.4
426: [2 -2 -2] 16224.1
426: [6 -2 -2] 6155.79 *
426: [10 -2 -2] 2386.22 *
426: [-10 2 -2] 63000.9
426: [-6 2 -2] 48491.8
426: [-2 2 -2] 31068.8
426: [2 2 -2] 16221.9
426: [6 2 -2] 6154.44
426: [10 2 -2] 2385.44 *
426: [-10 6 -2] 72052.8
426: [-6 6 -2] 57432.4
426: [-2 6 -2] 39536.8
426: [2 6 -2] 24663.8
426: [6 6 -2] 15277.1
426: [10 6 -2] 12300.5
426: [-10 10 -2] 84610.1
426: [-6 10 -2] 70915.1
426: [-2 10 -2] 53460.4
426: [2 10 -2] 39681
426: [6 10 -2] 32381
426: [10 10 -2] 31224.4
426: [-10 -10 2] 84829.9
426: [-6 -10 2] 71041.2
426: [-2 -10 2] 53536.6
426: [2 -10 2] 39746.7
426: [6 -10 2] 32446.9
426: [10 -10 2] 31283.5
426: [-10 -6 2] 72100.9
426: [-6 -6 2] 57460.6
426: [-2 -6 2] 39554
426: [2 -6 2] 24678.2
426: [6 -6 2] 15291.1
426: [10 -6 2] 12313
426: [-10 -2 2] 63000.9
426: [-6 -2 2] 48491.8
426: [-2 -2 2] 31068.8
426: [2 -2 2] 16221.9
426: [6 -2 2] 6154.44
426: [10 -2 2] 2385.44
426: [-10 2 2] 62990.9
426: [-6 2 2] 48485.5
426: [-2 2 2] 31065.2
426: [2 2 2] 16219.7
426: [6 2 2] 6153.1
426: [10 2 2] 2384.66 *
426: [-10 6 2] 72041.7
426: [-6 6 2] 57425.2
426: [-2 6 2] 39532.4
426: [2 6 2] 24660.8
426: [6 6 2] 15274.9
426: [10 6 2] 12298.9
426: [-10 10 2] 84597.7
426: [-6 10 2] 70906.7
426: [-2 10 2] 53454.9
426: [2 10 2] 39676.9
426: [6 10 2] 32377.5
426: [10 10 2] 31221.4
426: [-10 -10 6] 95561.4
426: [-6 -10 6] 81658.4
426: [-2 -10 6] 63613.3
426: [2 -10 6] 49813.8
426: [6 -10 6] 43342.5
426: [10 -10 6] 43131.5
426: [-10 -6 6] 81963.5
426: [-6 -6 6] 67208.4
426: [-2 -6 6] 48793.6
426: [2 -6 6] 33896.7
426: [6 -6 6] 25258.7
426: [10 -6 6] 23148.6
426: [-10 -2 6] 72052.8
426: [-6 -2 6] 57432.4
426: [-2 -2 6] 39536.8
426: [2 -2 6] 24663.8
426: [6 -2 6] 15277.1
426: [10 -2 6] 12300.5
426: [-10 2 6] 72041.7
426: [-6 2 6] 57425.2
426: [-2 2 6] 39532.4
426: [2 2 6] 24660.8
426: [6 2 6] 15274.9
426: [10 2 6] 12298.9
426: [-10 6 6] 81898.9
426: [-6 6 6] 67169.4
426: [-2 6 6] 48769.5
426: [2 6 6] 33876.9
426: [6 6 6] 25240
426: [10 6 6] 23132
426: [-10 10 6] 95309.5
426: [-6 10 6] 81512.3
426: [-2 10 6] 63524.1
426: [2 10 6] 49737.2
426: [6 10 6] 43266
426: [10 10 6] 43062.8
426: [-10 -10 10] 109668
426: [-6 -10 10] 96633.8
426: [-2 -10 10] 78907
426: [2 -10 10] 66152.1
426: [6 -10 10] 61839.3
426: [10 -10 10] 63556.7
426: [-10 -6 10] 95379.4
426: [-6 -6 10] 81554.8
426: [-2 -6 10] 63550.9
426: [2 -6 10] 49759.6
426: [6 -6 10] 43287.7
426: [10 -6 10] 43082.4
426: [-10 -2 10] 84610.1
426: [-6 -2 10] 70915.1
426: [-2 -2 10] 53460.4
426: [2 -2 10] 39681
426: [6 -2 10] 32381
426: [10 -2 10] 31224.4
426: [-10 2 10] 84597.7
426: [-6 2 10] 70906.7
426: [-2 2 10] 53454.9
426: [2 2 10] 39676.9
426: [6 2 10] 32377.5
426: [10 2 10] 31221.4
426: [-10 6 10] 95309.5
426: [-6 6 10] 81512.3
426: [-2 6 10] 63524.1
426: [2 6 10] 49737.2
426: [6 6 10] 43266
426: [10 6 10] 43062.8
426: [-10 10 10] 109399
426: [-6 10 10] 96478.4
426: [-2 10 10] 78812.5
426: [2 10 10] 66070.4
426: [6 10 10] 61757.4
426: [10 10 10] 63483
426: [2] xf_out->m_type = 1, xf_in->m_type = 0
426: Doing registration stage
426: [1] xf_in->m_type = 1, xf_out->m_type = 0
426: RESAMPLE 1 1: (1 1 1), (1 1 1)
426: RESAMPLE 1 1: (1 1 1), (1 1 1)
426: volume_calc_grad complete.
426: Computing grid search extent.
426: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50)
426: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50)
426: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50)
426: Native grid search extent: (-10, 10), (-10, 10), (-10, 10)
426: [10 2 2] 2384.66 *
426: Local grid search
426: [6.4 -1.6 -1.6] 4439.65
426: [8.8 -1.6 -1.6] 1771.35 *
426: [11.2 -1.6 -1.6] 1856.67
426: [13.6 -1.6 -1.6] 4787.36
426: [6.4 0.8 -1.6] 3954.1
426: [8.8 0.8 -1.6] 1244.73 *
426: [11.2 0.8 -1.6] 1300.61
426: [13.6 0.8 -1.6] 4226.79
426: [6.4 3.2 -1.6] 6520.93
426: [8.8 3.2 -1.6] 3949.58
426: [11.2 3.2 -1.6] 4155.43
426: [13.6 3.2 -1.6] 7178.92
426: [6.4 5.6 -1.6] 12337.8
426: [8.8 5.6 -1.6] 10089.9
426: [11.2 5.6 -1.6] 10636.9
426: [13.6 5.6 -1.6] 13872
426: [6.4 -1.6 0.8] 3954.1
426: [8.8 -1.6 0.8] 1244.73 *
426: [11.2 -1.6 0.8] 1300.61
426: [13.6 -1.6 0.8] 4226.79
426: [6.4 0.8 0.8] 3466.53
426: [8.8 0.8 0.8] 715.907 *
426: [11.2 0.8 0.8] 742.224
426: [13.6 0.8 0.8] 3663.89
426: [6.4 3.2 0.8] 6031.02
426: [8.8 3.2 0.8] 3418.24
426: [11.2 3.2 0.8] 3594.38
426: [13.6 3.2 0.8] 6613.31
426: [6.4 5.6 0.8] 11844.3
426: [8.8 5.6 0.8] 9554.72
426: [11.2 5.6 0.8] 10071.8
426: [13.6 5.6 0.8] 13302.2
426: [6.4 -1.6 3.2] 6520.93
426: [8.8 -1.6 3.2] 3949.58
426: [11.2 -1.6 3.2] 4155.43
426: [13.6 -1.6 3.2] 7178.92
426: [6.4 0.8 3.2] 6031.02
426: [8.8 0.8 3.2] 3418.24
426: [11.2 0.8 3.2] 3594.38
426: [13.6 0.8 3.2] 6613.31
426: [6.4 3.2 3.2] 8673.76
426: [8.8 3.2 3.2] 6203.3
426: [11.2 3.2 3.2] 6533.85
426: [13.6 3.2 3.2] 9652.77
426: [6.4 5.6 3.2] 14655.7
426: [8.8 5.6 3.2] 12518.1
426: [11.2 5.6 3.2] 13199.5
426: [13.6 5.6 3.2] 16535.7
426: [6.4 -1.6 5.6] 12337.8
426: [8.8 -1.6 5.6] 10089.9
426: [11.2 -1.6 5.6] 10636.9
426: [13.6 -1.6 5.6] 13872
426: [6.4 0.8 5.6] 11844.3
426: [8.8 0.8 5.6] 9554.72
426: [11.2 0.8 5.6] 10071.8
426: [13.6 0.8 5.6] 13302.2
426: [6.4 3.2 5.6] 14655.7
426: [8.8 3.2 5.6] 12518.1
426: [11.2 3.2 5.6] 13199.5
426: [13.6 3.2 5.6] 16535.7
426: [6.4 5.6 5.6] 20999.9
426: [8.8 5.6 5.6] 19216
426: [11.2 5.6 5.6] 20269.6
426: [13.6 5.6 5.6] 23835.8
426: [2] xf_out->m_type = 1, xf_in->m_type = 1
426: ** Registration worker thread finished.
426: Warping...
426: plm_warp_itk: xform_to_itk_vf
426: plm_warp_itk: convert_to_itk
426: plm_warp_itk: warping...
426: Saving image...
426: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha
426: Load:   0.058785
426: Run:    0.957996
426: Save:   0.00697112
426: Total:  1.02375
426: Finished!
426: 
426: STDERR: 
440: Not an error
142/571 Test #440: plm-compose-a .........................   Passed    0.35 sec
test 448
        Start 448: plm-compose-c

448: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-xf.txt;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
448: Test timeout computed to be: 1500
426: Not an error
143/571 Test #426: plm-reg-trans-b .......................   Passed    1.39 sec
test 452
        Start 452: plm-resample-a

452: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha;--output-type;float;--subsample;2 2 2" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
452: Test timeout computed to be: 1500
448: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
448: PARMS is compose;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-xf.txt;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha
448: EXPECTED_ERRNO is 
444: Not an error
144/571 Test #444: plm-compose-b .........................   Passed    0.27 sec
test 455
        Start 455: plm-resample-b

455: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha;--output-type;float;--fixed;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
455: Test timeout computed to be: 1500
452: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
452: PARMS is resample;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha;--output-type;float;--subsample;2 2 2
452: EXPECTED_ERRNO is 
455: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
455: PARMS is resample;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha;--output-type;float;--fixed;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha
455: EXPECTED_ERRNO is 
452: RETVAL: 0
452: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha
452: 
452: STDERR: 
452: Not an error
145/571 Test #452: plm-resample-a ........................   Passed    0.24 sec
test 458
        Start 458: plm-resample-c

458: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha;--fixed;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
458: Test timeout computed to be: 1500
458: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
458: PARMS is resample;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha;--fixed;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha
458: EXPECTED_ERRNO is 
448: RETVAL: 0
448: STDOUT: bspline_xform_initialize
448: rdims = (2,2,2)
448: vox_per_rgn = (22,22,22)
448: cdims = (5 5 5)
448: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha
448: Finished!
448: 
448: STDERR: 
455: RETVAL: 0
455: STDOUT: Time = 0.001853 seconds
455: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha
455: 
455: STDERR: 
448: Not an error
455: Not an error
146/571 Test #448: plm-compose-c .........................   Passed    0.40 sec
test 461
        Start 461: plm-scale-a

461: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=scale;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd;--weight;0.4;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
461: Test timeout computed to be: 1500
147/571 Test #455: plm-resample-b ........................   Passed    0.37 sec
test 464
        Start 464: plm-scale-vf-a

464: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-vf-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=scale;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd;--weight;0.4;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
464: Test timeout computed to be: 1500
461: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
461: PARMS is scale;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd;--weight;0.4;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha
461: EXPECTED_ERRNO is 
464: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
464: PARMS is scale;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd;--weight;0.4;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha
464: EXPECTED_ERRNO is 
458: RETVAL: 0
458: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha
458: 
458: STDERR: 
461: RETVAL: 0
461: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd
461: 
461: STDERR: 
458: Not an error
148/571 Test #458: plm-resample-c ........................   Passed    0.39 sec
test 470
        Start 470: plm-thumbnail-a

470: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png;--spacing;2" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
470: Test timeout computed to be: 1500
470: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
470: PARMS is thumbnail;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png;--spacing;2
470: EXPECTED_ERRNO is 
464: RETVAL: 0
464: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd
464: 
464: STDERR: 
461: Not an error
149/571 Test #461: plm-scale-a ...........................   Passed    0.35 sec
test 473
        Start 473: plm-thumbnail-b

473: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png;--spacing;2" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
473: Test timeout computed to be: 1500
473: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
473: PARMS is thumbnail;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png;--spacing;2
473: EXPECTED_ERRNO is 
464: Not an error
150/571 Test #464: plm-scale-vf-a ........................   Passed    0.38 sec
test 476
        Start 476: plm-thumbnail-c

476: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png;--spacing;2;--auto-adjust" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
476: Test timeout computed to be: 1500
476: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
476: PARMS is thumbnail;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png;--spacing;2;--auto-adjust
476: EXPECTED_ERRNO is 
470: RETVAL: 0
470: STDOUT: Time = 0.000756 seconds
470: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png
470: 
470: STDERR: 
429: RETVAL: 0
429: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
429: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
429: Launching registration worker thread
429: Inside registration worker thread
429: Doing registration stage
429: [1] xf_in->m_type = 0, xf_out->m_type = 0
429: RESAMPLE 1 1: (1 1 1), (1 1 1)
429: RESAMPLE 1 1: (1 1 1), (1 1 1)
429: volume_calc_grad complete.
429: Computing grid search extent.
429: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50)
429: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50)
429: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50)
429: Native grid search extent: (-10, 10), (-10, 10), (-10, 10)
429: [0 0 0] -0.366001 *
429: Global grid search
429: [-10 -10 -10] -0.0657023
429: [-6 -10 -10] -0.0463935
429: [-2 -10 -10] -0.0578569
429: [2 -10 -10] -0.104587
429: [6 -10 -10] -0.134745
429: [10 -10 -10] -0.132346
429: [-10 -6 -10] -0.0447641
429: [-6 -6 -10] -0.0444838
429: [-2 -6 -10] -0.0804107
429: [2 -6 -10] -0.157649
429: [6 -6 -10] -0.217923
429: [10 -6 -10] -0.228427
429: [-10 -2 -10] -0.0363824
429: [-6 -2 -10] -0.0510381
429: [-2 -2 -10] -0.105651
429: [2 -2 -10] -0.207715
429: [6 -2 -10] -0.301396
429: [10 -2 -10] -0.331995
429: [-10 2 -10] -0.0360564
429: [-6 2 -10] -0.0510835
429: [-2 2 -10] -0.105603
429: [2 2 -10] -0.207349
429: [6 2 -10] -0.301597
429: [10 2 -10] -0.333546
429: [-10 6 -10] -0.043624
429: [-6 6 -10] -0.0435673
429: [-2 6 -10] -0.0792328
429: [2 6 -10] -0.15537
429: [6 6 -10] -0.21609
429: [10 6 -10] -0.229483
429: [-10 10 -10] -0.0625422
429: [-6 10 -10] -0.044456
429: [-2 10 -10] -0.0566679
429: [2 10 -10] -0.102753
429: [6 10 -10] -0.133354
429: [10 10 -10] -0.133022
429: [-10 -10 -6] -0.0447641
429: [-6 -10 -6] -0.0444838
429: [-2 -10 -6] -0.0804107
429: [2 -10 -6] -0.157649
429: [6 -10 -6] -0.217923
429: [10 -10 -6] -0.228427
429: [-10 -6 -6] -0.0419245
429: [-6 -6 -6] -0.0616512
429: [-2 -6 -6] -0.125976
429: [2 -6 -6] -0.24928
429: [6 -6 -6] -0.370675 *
429: [10 -6 -6] -0.41107 *
429: [-10 -2 -6] -0.0458151
429: [-6 -2 -6] -0.0813895
429: [-2 -2 -6] -0.168343
429: [2 -2 -6] -0.331623
429: [6 -2 -6] -0.520659 *
429: [10 -2 -6] -0.60981 *
429: [-10 2 -6] -0.0460451
429: [-6 2 -6] -0.0818015
429: [-2 2 -6] -0.168558
429: [2 2 -6] -0.330972
429: [6 2 -6] -0.519715
429: [10 2 -6] -0.610965 *
429: [-10 6 -6] -0.0416946
429: [-6 6 -6] -0.0613956
429: [-2 6 -6] -0.125047
429: [2 6 -6] -0.246207
429: [6 6 -6] -0.366747
429: [10 6 -6] -0.41144
429: [-10 10 -6] -0.043562
429: [-6 10 -6] -0.0440007
429: [-2 10 -6] -0.0795809
429: [2 10 -6] -0.155169
429: [6 10 -6] -0.215936
429: [10 10 -6] -0.22921
429: [-10 -10 -2] -0.0363824
429: [-6 -10 -2] -0.0510381
429: [-2 -10 -2] -0.105651
429: [2 -10 -2] -0.207715
429: [6 -10 -2] -0.301396
429: [10 -10 -2] -0.331995
429: [-10 -6 -2] -0.0458151
429: [-6 -6 -2] -0.0813895
429: [-2 -6 -2] -0.168343
429: [2 -6 -2] -0.331623
429: [6 -6 -2] -0.520659
429: [10 -6 -2] -0.60981
429: [-10 -2 -2] -0.0623074
429: [-6 -2 -2] -0.114225
429: [-2 -2 -2] -0.227442
429: [2 -2 -2] -0.450611
429: [6 -2 -2] -0.79525 *
429: [10 -2 -2] -1.06281 *
429: [-10 2 -2] -0.0628058
429: [-6 2 -2] -0.114854
429: [-2 2 -2] -0.227853
429: [2 2 -2] -0.45011
429: [6 2 -2] -0.79301
429: [10 2 -2] -1.06302 *
429: [-10 6 -2] -0.0464919
429: [-6 6 -2] -0.0817851
429: [-2 6 -2] -0.167859
429: [2 6 -2] -0.328807
429: [6 6 -2] -0.516135
429: [10 6 -2] -0.60998
429: [-10 10 -2] -0.036042
429: [-6 10 -2] -0.0508055
429: [-2 10 -2] -0.104874
429: [2 10 -2] -0.205278
429: [6 10 -2] -0.299375
429: [10 10 -2] -0.332915
429: [-10 -10 2] -0.0360564
429: [-6 -10 2] -0.0510835
429: [-2 -10 2] -0.105603
429: [2 -10 2] -0.207349
429: [6 -10 2] -0.301597
429: [10 -10 2] -0.333546
429: [-10 -6 2] -0.0460451
429: [-6 -6 2] -0.0818015
429: [-2 -6 2] -0.168558
429: [2 -6 2] -0.330972
429: [6 -6 2] -0.519715
429: [10 -6 2] -0.610965
429: [-10 -2 2] -0.0628058
429: [-6 -2 2] -0.114854
429: [-2 -2 2] -0.227853
429: [2 -2 2] -0.45011
429: [6 -2 2] -0.79301
429: [10 -2 2] -1.06302
429: [-10 2 2] -0.0634055
429: [-6 2 2] -0.115563
429: [-2 2 2] -0.228352
429: [2 2 2] -0.449777
429: [6 2 2] -0.791187
429: [10 2 2] -1.06397 *
429: [-10 6 2] -0.0467633
429: [-6 6 2] -0.0822511
429: [-2 6 2] -0.168209
429: [2 6 2] -0.328525
429: [6 6 2] -0.515825
429: [10 6 2] -0.611858
429: [-10 10 2] -0.0358199
429: [-6 10 2] -0.0509452
429: [-2 10 2] -0.104965
429: [2 10 2] -0.205182
429: [6 10 2] -0.299823
429: [10 10 2] -0.334637
429: [-10 -10 6] -0.043624
429: [-6 -10 6] -0.0435673
429: [-2 -10 6] -0.0792328
429: [2 -10 6] -0.15537
429: [6 -10 6] -0.21609
429: [10 -10 6] -0.229483
429: [-10 -6 6] -0.0416946
429: [-6 -6 6] -0.0613956
429: [-2 -6 6] -0.125047
429: [2 -6 6] -0.246207
429: [6 -6 6] -0.366747
429: [10 -6 6] -0.41144
429: [-10 -2 6] -0.0464919
429: [-6 -2 6] -0.0817851
429: [-2 -2 6] -0.167859
429: [2 -2 6] -0.328807
429: [6 -2 6] -0.516135
429: [10 -2 6] -0.60998
429: [-10 2 6] -0.0467633
429: [-6 2 6] -0.0822511
429: [-2 2 6] -0.168209
429: [2 2 6] -0.328525
429: [6 2 6] -0.515825
429: [10 2 6] -0.611858
429: [-10 6 6] -0.0420716
429: [-6 6 6] -0.0616282
429: [-2 6 6] -0.124622
429: [2 6 6] -0.244167
429: [6 6 6] -0.364463
429: [10 6 6] -0.413552
429: [-10 10 6] -0.042919
429: [-6 10 6] -0.0432268
429: [-2 10 6] -0.078484
429: [2 10 6] -0.153286
429: [6 10 6] -0.214701
429: [10 10 6] -0.230766
429: [-10 -10 10] -0.0625422
429: [-6 -10 10] -0.044456
429: [-2 -10 10] -0.0566679
429: [2 -10 10] -0.102753
429: [6 -10 10] -0.133354
429: [10 -10 10] -0.133022
429: [-10 -6 10] -0.043562
429: [-6 -6 10] -0.0440007
429: [-2 -6 10] -0.0795809
429: [2 -6 10] -0.155169
429: [6 -6 10] -0.215936
429: [10 -6 10] -0.22921
429: [-10 -2 10] -0.036042
429: [-6 -2 10] -0.0508055
429: [-2 -2 10] -0.104874
429: [2 -2 10] -0.205278
429: [6 -2 10] -0.299375
429: [10 -2 10] -0.332915
429: [-10 2 10] -0.0358199
429: [-6 2 10] -0.0509452
429: [-2 2 10] -0.104965
429: [2 2 10] -0.205182
429: [6 2 10] -0.299823
429: [10 2 10] -0.334637
429: [-10 6 10] -0.042919
429: [-6 6 10] -0.0432268
429: [-2 6 10] -0.078484
429: [2 6 10] -0.153286
429: [6 6 10] -0.214701
429: [10 6 10] -0.230766
429: [-10 10 10] -0.0609081
429: [-6 10 10] -0.0434493
429: [-2 10 10] -0.0559197
429: [2 10 10] -0.101407
429: [6 10 10] -0.132652
429: [10 10 10] -0.134325
429: [2] xf_out->m_type = 1, xf_in->m_type = 0
429: Doing registration stage
429: [1] xf_in->m_type = 1, xf_out->m_type = 0
429: RESAMPLE 1 1: (1 1 1), (1 1 1)
429: RESAMPLE 1 1: (1 1 1), (1 1 1)
429: volume_calc_grad complete.
429: Computing grid search extent.
429: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50)
429: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50)
429: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50)
429: Native grid search extent: (-10, 10), (-10, 10), (-10, 10)
429: [10 2 2] -1.06397 *
429: Local grid search
429: [6.4 -1.6 -1.6] -0.883407
429: [8.8 -1.6 -1.6] -1.12376 *
429: [11.2 -1.6 -1.6] -1.12967 *
429: [13.6 -1.6 -1.6] -0.914496
429: [6.4 0.8 -1.6] -0.913773
429: [8.8 0.8 -1.6] -1.19876 *
429: [11.2 0.8 -1.6] -1.20812 *
429: [13.6 0.8 -1.6] -0.955547
429: [6.4 3.2 -1.6] -0.766583
429: [8.8 3.2 -1.6] -0.916579
429: [11.2 3.2 -1.6] -0.920988
429: [13.6 3.2 -1.6] -0.784372
429: [6.4 5.6 -1.6] -0.576245
429: [8.8 5.6 -1.6] -0.655686
429: [11.2 5.6 -1.6] -0.653953
429: [13.6 5.6 -1.6] -0.574785
429: [6.4 -1.6 0.8] -0.913773
429: [8.8 -1.6 0.8] -1.19876
429: [11.2 -1.6 0.8] -1.20812
429: [13.6 -1.6 0.8] -0.955547
429: [6.4 0.8 0.8] -0.948114
429: [8.8 0.8 0.8] -1.30327 *
429: [11.2 0.8 0.8] -1.3196 *
429: [13.6 0.8 0.8] -1.00372
429: [6.4 3.2 0.8] -0.788348
429: [8.8 3.2 0.8] -0.951558
429: [11.2 3.2 0.8] -0.958168
429: [13.6 3.2 0.8] -0.812303
429: [6.4 5.6 0.8] -0.588765
429: [8.8 5.6 0.8] -0.673812
429: [11.2 5.6 0.8] -0.67344
429: [13.6 5.6 0.8] -0.591068
429: [6.4 -1.6 3.2] -0.766583
429: [8.8 -1.6 3.2] -0.916579
429: [11.2 -1.6 3.2] -0.920988
429: [13.6 -1.6 3.2] -0.784372
429: [6.4 0.8 3.2] -0.788348
429: [8.8 0.8 3.2] -0.951558
429: [11.2 0.8 3.2] -0.958168
429: [13.6 0.8 3.2] -0.812303
429: [6.4 3.2 3.2] -0.677918
429: [8.8 3.2 3.2] -0.791729
429: [11.2 3.2 3.2] -0.794915
429: [13.6 3.2 3.2] -0.688998
429: [6.4 5.6 3.2] -0.520489
429: [8.8 5.6 3.2] -0.585515
429: [11.2 5.6 3.2] -0.583462
429: [13.6 5.6 3.2] -0.515484
429: [6.4 -1.6 5.6] -0.576245
429: [8.8 -1.6 5.6] -0.655686
429: [11.2 -1.6 5.6] -0.653953
429: [13.6 -1.6 5.6] -0.574785
429: [6.4 0.8 5.6] -0.588765
429: [8.8 0.8 5.6] -0.673812
429: [11.2 0.8 5.6] -0.67344
429: [13.6 0.8 5.6] -0.591068
429: [6.4 3.2 5.6] -0.520489
429: [8.8 3.2 5.6] -0.585515
429: [11.2 3.2 5.6] -0.583462
429: [13.6 3.2 5.6] -0.515484
429: [6.4 5.6 5.6] -0.412801
429: [8.8 5.6 5.6] -0.455339
429: [11.2 5.6 5.6] -0.451028
429: [13.6 5.6 5.6] -0.399458
429: [2] xf_out->m_type = 1, xf_in->m_type = 1
429: Warping...
429: plm_warp_itk: xform_to_itk_vf
429: plm_warp_itk: convert_to_itk
429: plm_warp_itk: warping...
429: ** Registration worker thread finished.
429: Saving image...
429: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha
429: Load:   0.0414908
429: Run:    1.96307
429: Save:   0.00471306
429: Total:  2.00927
429: Finished!
429: 
429: STDERR: 
470: Not an error
151/571 Test #470: plm-thumbnail-a .......................   Passed    0.34 sec
test 479
        Start 479: plm-intersect

479: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-intersect" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=intersect;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
479: Test timeout computed to be: 1500
479: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
479: PARMS is intersect;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha
479: EXPECTED_ERRNO is 
429: Not an error
152/571 Test #429: plm-reg-trans-mi-a ....................   Passed    2.26 sec
test 482
        Start 482: plm-union

482: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-union" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=union;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
482: Test timeout computed to be: 1500
473: RETVAL: 0
473: STDOUT: Time = 0.000857 seconds
473: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png
473: 
473: STDERR: 
476: RETVAL: 0
476: STDOUT: Time = 0.000758 seconds
476: Auto-adjusting intensities...
476: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png
476: 
476: STDERR: 
482: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
482: PARMS is union;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha
482: EXPECTED_ERRNO is 
476: Not an error
153/571 Test #476: plm-thumbnail-c .......................   Passed    0.33 sec
test 485
        Start 485: plm-threshold-a

485: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha;--above;-888" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
485: Test timeout computed to be: 1500
473: Not an error
485: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
485: PARMS is threshold;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha;--above;-888
485: EXPECTED_ERRNO is 
154/571 Test #473: plm-thumbnail-b .......................   Passed    0.39 sec
test 488
        Start 488: plm-threshold-b

488: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha;--below;-900" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
488: Test timeout computed to be: 1500
488: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
488: PARMS is threshold;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha;--below;-900
488: EXPECTED_ERRNO is 
479: RETVAL: 0
479: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha
479: 
479: STDERR: 
482: RETVAL: 0
482: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha
482: 
482: STDERR: 
479: Not an error
155/571 Test #479: plm-intersect .........................   Passed    0.39 sec
test 491
        Start 491: plm-threshold-c

491: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha;--range;-900,-888" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
491: Test timeout computed to be: 1500
482: Not an error
485: RETVAL: 0
485: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha
485: 
485: STDERR: 
156/571 Test #482: plm-union .............................   Passed    0.36 sec
test 497
        Start 497: plm-warp-a

497: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--algorithm;itk;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
497: Test timeout computed to be: 1500
491: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
491: PARMS is threshold;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha;--range;-900,-888
491: EXPECTED_ERRNO is 
488: RETVAL: 0
488: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha
488: 
488: STDERR: 
497: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
497: PARMS is warp;--algorithm;itk;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha
497: EXPECTED_ERRNO is 
485: Not an error
157/571 Test #485: plm-threshold-a .......................   Passed    0.35 sec
test 500
        Start 500: plm-warp-b

500: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha;--default-value;0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
500: Test timeout computed to be: 1500
500: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
500: PARMS is warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha;--default-value;0
500: EXPECTED_ERRNO is 
488: Not an error
158/571 Test #488: plm-threshold-b .......................   Passed    0.36 sec
test 505
        Start 505: plm-warp-c

505: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--algorithm;itk;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha;--interpolation;nn;--default-value;0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
505: Test timeout computed to be: 1500
505: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
505: PARMS is warp;--algorithm;itk;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha;--interpolation;nn;--default-value;0
505: EXPECTED_ERRNO is 
491: RETVAL: 0
491: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha
491: 
491: STDERR: 
491: Not an error
159/571 Test #491: plm-threshold-c .......................   Passed    0.38 sec
test 508
        Start 508: plm-warp-d

508: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha;--interpolation;nn;--default-value;0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
508: Test timeout computed to be: 1500
508: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
508: PARMS is warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha;--interpolation;nn;--default-value;0
508: EXPECTED_ERRNO is 
500: RETVAL: 0
500: STDOUT: Loading xform (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-bspline-2.txt)
500: bspline_xform_initialize
500: rdims = (3,3,3)
500: vox_per_rgn = (15,15,15)
500: cdims = (6 6 6)
500: Setting PIH from XFORM
500: PIH is:
500: Origin = -25.0000 -25.0000 -25.0000
500: Size = 38 38 38
500: Spacing = 1.3158 1.3158 1.3158
500: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
500: Rt_study_warp: Warping m_img
500: Running: plm_warp_native
500: Converting input image...
500: Converting xform...
500: bspline_xform_initialize
500: rdims = (3,3,3)
500: vox_per_rgn = (15,15,15)
500: cdims = (6 6 6)
500: Creating output vf...
500: Creating output volume...
500: Running native warper...
500: bspline_warp complete.
500: Back convert to original type...
500: > Convert vf to itk
500: > Conversion complete.
500: plm_warp_native is complete.
500: Rt_study_warp: Saving m_img (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha)
500: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha
500: Rt_study_warp: Saving vf.
500: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha
500: Rt_study_warp: warp and save ss.
500: Finished!
500: 
500: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
500: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
500: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
500: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
500: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
500: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
500: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
500: 
500: Not an error
160/571 Test #500: plm-warp-b ............................   Passed    0.42 sec
test 511
        Start 511: plm-warp-f

511: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-f" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd;--default-value;0;--harden-linear-xf" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
511: Test timeout computed to be: 1500
511: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
511: PARMS is warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd;--default-value;0;--harden-linear-xf
511: EXPECTED_ERRNO is 
497: RETVAL: 0
497: STDOUT: Loading xform (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-bspline-2.txt)
497: bspline_xform_initialize
497: rdims = (3,3,3)
497: vox_per_rgn = (15,15,15)
497: cdims = (6 6 6)
497: Setting PIH from XFORM
497: PIH is:
497: Origin = -25.0000 -25.0000 -25.0000
497: Size = 38 38 38
497: Spacing = 1.3158 1.3158 1.3158
497: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
497: Rt_study_warp: Warping m_img
497: plm_warp_itk: xform_to_itk_vf
497: plm_warp_itk: convert_to_itk
497: plm_warp_itk: warping...
497: Rt_study_warp: Saving m_img (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha)
497: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha
497: Rt_study_warp: Saving vf.
497: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha
497: Rt_study_warp: warp and save ss.
497: Finished!
497: 
497: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
497: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
497: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
497: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
497: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
497: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
497: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
497: 
497: Not an error
161/571 Test #497: plm-warp-a ............................   Passed    0.59 sec
test 514
        Start 514: plm-warp-g

514: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-g" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
514: Test timeout computed to be: 1500
514: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
514: PARMS is warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd;--default-value;0;--resample-linear-xf
514: EXPECTED_ERRNO is 
511: RETVAL: 0
511: STDOUT: Loading xform (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-affine-a.tfm)
511: Setting PIH from M_IMG
511: PIH is:
511: Origin = -243.4211 -243.4211 -243.4211
511: Size = 38 38 38
511: Spacing = 13.1579 13.1579 13.1579
511: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
511: Rt_study_warp: Warping m_img
511: plm_warp_itk: xform_to_itk_vf
511: Rt_study_warp: Saving m_img (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd)
511: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd
511: Rt_study_warp: warp and save ss.
511: Finished!
511: 
511: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
511: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
511: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
511: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
511: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
511: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
511: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
511: 
505: RETVAL: 0
505: STDOUT: Loading xform (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-bspline-2.txt)
505: bspline_xform_initialize
505: rdims = (3,3,3)
505: vox_per_rgn = (15,15,15)
505: cdims = (6 6 6)
505: Setting PIH from XFORM
505: PIH is:
505: Origin = -25.0000 -25.0000 -25.0000
505: Size = 38 38 38
505: Spacing = 1.3158 1.3158 1.3158
505: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
505: Rt_study_warp: Warping m_img
505: plm_warp_itk: xform_to_itk_vf
505: plm_warp_itk: convert_to_itk
505: plm_warp_itk: warping...
505: Rt_study_warp: Saving m_img (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha)
505: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha
505: Rt_study_warp: Saving vf.
505: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha
505: Rt_study_warp: warp and save ss.
505: Finished!
505: 
505: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
505: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
505: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
505: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
505: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
505: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
505: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
505: 
511: Not an error
505: Not an error
162/571 Test #511: plm-warp-f ............................   Passed    0.27 sec
test 517
        Start 517: plm-warp-h

517: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-h" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
517: Test timeout computed to be: 1500
508: RETVAL: 0
508: STDOUT: Loading xform (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-bspline-2.txt)
508: bspline_xform_initialize
508: rdims = (3,3,3)
508: vox_per_rgn = (15,15,15)
508: cdims = (6 6 6)
508: Setting PIH from XFORM
508: PIH is:
508: Origin = -25.0000 -25.0000 -25.0000
508: Size = 38 38 38
508: Spacing = 1.3158 1.3158 1.3158
508: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
508: Rt_study_warp: Warping m_img
508: Running: plm_warp_native
508: Converting input image...
508: Converting xform...
508: bspline_xform_initialize
508: rdims = (3,3,3)
508: vox_per_rgn = (15,15,15)
508: cdims = (6 6 6)
508: Creating output vf...
508: Creating output volume...
508: Running native warper...
508: bspline_warp complete.
508: Back convert to original type...
508: > Convert vf to itk
508: > Conversion complete.
508: plm_warp_native is complete.
508: Rt_study_warp: Saving m_img (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha)
508: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha
508: Rt_study_warp: Saving vf.
508: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha
508: Rt_study_warp: warp and save ss.
508: Finished!
508: 
508: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
508: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
508: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
508: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
508: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
508: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
508: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
508: 
163/571 Test #505: plm-warp-c ............................   Passed    0.65 sec
test 520
        Start 520: plm-warp-i

520: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-i" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
520: Test timeout computed to be: 1500
517: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
517: PARMS is warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd;--default-value;0;--resample-linear-xf
517: EXPECTED_ERRNO is 
520: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
520: PARMS is warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd;--default-value;0;--resample-linear-xf
520: EXPECTED_ERRNO is 
508: Not an error
164/571 Test #508: plm-warp-d ............................   Passed    0.44 sec
test 523
        Start 523: plm-xf-convert-a

523: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
523: Test timeout computed to be: 1500
523: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
523: PARMS is xf-convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;
523: EXPECTED_ERRNO is 
514: RETVAL: 0
514: STDOUT: Loading xform (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-affine-a.tfm)
514: Setting PIH from M_IMG
514: PIH is:
514: Origin = -243.4211 -243.4211 -243.4211
514: Size = 38 38 38
514: Spacing = 13.1579 13.1579 13.1579
514: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
514: Rt_study_warp: Warping m_img
514: plm_warp_itk: xform_to_itk_vf
514: plm_warp_itk: convert_to_itk
514: plm_warp_itk: warping...
514: Rt_study_warp: Saving m_img (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd)
514: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd
514: Rt_study_warp: warp and save ss.
514: Finished!
514: 
514: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
514: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
514: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
514: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
514: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
514: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
514: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
514: 
523: RETVAL: 0
523: STDOUT: bspline_xform_initialize
523: rdims = (1,1,1)
523: vox_per_rgn = (4,4,4)
523: cdims = (4 4 4)
523: about to xform_convert
523: Converting to (itk) vector field
523: did xform_convert
523: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha
523: 
523: STDERR: 
514: Not an error
165/571 Test #514: plm-warp-g ............................   Passed    0.38 sec
test 527
        Start 527: plm-xf-convert-d-warp-1

527: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-xf-convert.txt;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
527: Test timeout computed to be: 1500
527: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
527: PARMS is warp;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-xf-convert.txt;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd
527: EXPECTED_ERRNO is 
517: RETVAL: 0
517: STDOUT: Loading xform (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-translation-1.txt)
517: Setting PIH from M_IMG
517: PIH is:
517: Origin = -25.0000 -25.0000 -25.0000
517: Size = 38 38 38
517: Spacing = 1.3158 1.3158 1.3158
517: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
517: Rt_study_warp: Warping m_img
517: plm_warp_itk: xform_to_itk_vf
517: plm_warp_itk: convert_to_itk
517: plm_warp_itk: warping...
517: Rt_study_warp: Saving m_img (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd)
517: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd
517: Rt_study_warp: warp and save ss.
517: Finished!
517: 
517: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
517: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
517: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
517: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
517: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
517: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
517: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
517: 
523: Not an error
166/571 Test #523: plm-xf-convert-a ......................   Passed    0.26 sec
test 530
        Start 530: plm-xf-convert-d-warp-2

530: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
530: Test timeout computed to be: 1500
530: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
530: PARMS is warp;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd
530: EXPECTED_ERRNO is 
520: RETVAL: 0
520: STDOUT: Loading xform (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/xf-translation-1.txt)
520: Setting PIH from M_IMG
520: PIH is:
520: Origin = -25.0000 -25.0000 -25.0000
520: Size = 38 38 38
520: Spacing = 1.3158 1.3158 1.3158
520: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
520: Rt_study_warp: Warping m_img
520: plm_warp_itk: xform_to_itk_vf
520: plm_warp_itk: convert_to_itk
520: plm_warp_itk: warping...
520: Rt_study_warp: Saving m_img (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd)
520: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd
520: Rt_study_warp: warp and save ss.
520: Finished!
520: 
520: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
520: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
520: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
520: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
520: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
520: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
520: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
520: 
517: Not an error
167/571 Test #517: plm-warp-h ............................   Passed    0.35 sec
test 536
        Start 536: plm-xf-convert-h

536: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-h" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd;--fixed;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;vf" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
536: Test timeout computed to be: 1500
536: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
536: PARMS is xf-convert;--filenames-without-uids;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd;--fixed;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;vf
536: EXPECTED_ERRNO is 
520: Not an error
168/571 Test #520: plm-warp-i ............................   Passed    0.38 sec
test 539
        Start 539: xf-invert-vf-zero-1

539: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-zero-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--fixed;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
539: Test timeout computed to be: 1500
527: RETVAL: 0
527: STDOUT: Loading xform (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-xf-convert.txt)
527: bspline_xform_initialize
527: rdims = (2,2,2)
527: vox_per_rgn = (11,11,11)
527: cdims = (5 5 5)
527: Setting PIH from XFORM
527: PIH is:
527: Origin = -24.3421 -24.3421 -24.3421
527: Size = 19 19 19
527: Spacing = 2.6316 2.6316 2.6316
527: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
527: Rt_study_warp: Warping m_img
527: Running: plm_warp_native
527: Converting input image...
527: Converting xform...
527: bspline_xform_initialize
527: rdims = (2,2,2)
527: vox_per_rgn = (11,11,11)
527: cdims = (5 5 5)
527: Creating output vf...
527: Creating output volume...
527: Running native warper...
527: bspline_warp complete.
527: Back convert to original type...
527: > Convert vf to itk
527: > Conversion complete.
527: plm_warp_native is complete.
527: Rt_study_warp: Saving m_img (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd)
527: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd
527: Rt_study_warp: warp and save ss.
527: Finished!
527: 
527: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
527: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
527: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
527: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
527: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
527: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
527: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
527: 
539: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
539: PARMS is xf-invert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--fixed;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha
539: EXPECTED_ERRNO is 
527: Not an error
169/571 Test #527: plm-xf-convert-d-warp-1 ...............   Passed    0.28 sec
test 542
        Start 542: xf-invert-vf-trans-1

542: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-trans-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--fixed;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha;--iterations;10" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
542: Test timeout computed to be: 1500
542: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
542: PARMS is xf-invert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--fixed;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha;--iterations;10
542: EXPECTED_ERRNO is 
539: RETVAL: 0
539: STDOUT: Paste and smooth loop
539: Iteration 0/20
539: Convolving
539: Iteration 1/20
539: Convolving
539: Iteration 2/20
539: Convolving
539: Iteration 3/20
539: Convolving
539: Iteration 4/20
539: Convolving
539: Iteration 5/20
539: Convolving
539: Iteration 6/20
539: Convolving
539: Iteration 7/20
539: Convolving
539: Iteration 8/20
539: Convolving
539: Iteration 9/20
539: Convolving
539: Iteration 10/20
539: Convolving
539: Iteration 11/20
539: Convolving
539: Iteration 12/20
539: Convolving
539: Iteration 13/20
539: Convolving
539: Iteration 14/20
539: Convolving
539: Iteration 15/20
539: Convolving
539: Iteration 16/20
539: Convolving
539: Iteration 17/20
539: Convolving
539: Iteration 18/20
539: Convolving
539: Iteration 19/20
539: Convolving
539: Done.
539: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha
539: 
539: STDERR: 
536: RETVAL: 0
536: STDOUT: about to xform_convert
536: Converting to (itk) vector field
536: did xform_convert
536: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd
536: 
536: STDERR: 
539: Not an error
536: Not an error
170/571 Test #536: plm-xf-convert-h ......................   Passed    0.36 sec
test 549
        Start 549: proton-dose-1

549: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
549: Test timeout computed to be: 1500
171/571 Test #539: xf-invert-vf-zero-1 ...................   Passed    0.33 sec
test 552
        Start 552: proton-dose-4a

552: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
552: Test timeout computed to be: 1500
549: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
549: PARMS is dose;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.txt
549: EXPECTED_ERRNO is 
552: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
552: PARMS is dose;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.txt
552: EXPECTED_ERRNO is 
542: RETVAL: 0
542: STDOUT: Paste and smooth loop
542: Iteration 0/10
542: Convolving
542: Iteration 1/10
542: Convolving
542: Iteration 2/10
542: Convolving
542: Iteration 3/10
542: Convolving
542: Iteration 4/10
542: Convolving
542: Iteration 5/10
542: Convolving
542: Iteration 6/10
542: Convolving
542: Iteration 7/10
542: Convolving
542: Iteration 8/10
542: Convolving
542: Iteration 9/10
542: Convolving
542: Done.
542: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha
542: 
542: STDERR: 
542: Not an error
172/571 Test #542: xf-invert-vf-trans-1 ..................   Passed    0.35 sec
test 555
        Start 555: proton-dose-4d

555: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
555: Test timeout computed to be: 1500
555: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
555: PARMS is dose;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.txt
555: EXPECTED_ERRNO is 
530: RETVAL: 0
530: STDOUT: Loading xform (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm)
530: BSplineDeformableTransform (0x5969e578dc90)
530:   RTTI typeinfo:   itk::BSplineDeformableTransform<double, 3u, 3u>
530:   Reference Count: 3
530:   Modified Time: 1444
530:   Debug: Off
530:   Object Name: 
530:   Observers: 
530:     none
530:   CoefficientImage: [ 0x5969e593b510, 0x5969e5941e40, 0x5969e5942100 ]
530:   ValidRegion: ImageRegion (0x5969e578ddf0)
530:   Dimension: 3
530:   Index: [1, 1, 1]
530:   Size: [2, 2, 2]
530: 
530:   BulkTransform: 0x5969e5720c60
530:   WeightsFunction: 0x5969e5791dd0
530:   BulkTransformType: IdentityTransform
530:   GridOrigin: [-28.9474, -28.9474, -28.9474]
530:   GridSpacing: [28.9474, 28.9474, 28.9474]
530:   GridDirection: 1 0 0
530: 0 1 0
530: 0 0 1
530: 
530:   GridRegion: ImageRegion (0x5969e593b718)
530:   Dimension: 3
530:   Index: [0, 0, 0]
530:   Size: [4, 4, 4]
530: 
530: Setting PIH from M_IMG
530: PIH is:
530: Origin = -25.0000 -25.0000 -25.0000
530: Size = 38 38 38
530: Spacing = 1.3158 1.3158 1.3158
530: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
530: Rt_study_warp: Warping m_img
530: plm_warp_itk: xform_to_itk_vf
530: plm_warp_itk: convert_to_itk
530: plm_warp_itk: warping...
530: Rt_study_warp: Saving m_img (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd)
530: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd
530: Rt_study_warp: warp and save ss.
530: Finished!
530: 
530: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
530: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
530: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
530: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
530: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
530: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
530: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
530: 
530: Not an error
173/571 Test #530: plm-xf-convert-d-warp-2 ...............   Passed    0.72 sec
test 558
        Start 558: proton-dose-5a

558: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
558: Test timeout computed to be: 1500
558: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
558: PARMS is dose;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.txt
558: EXPECTED_ERRNO is 
549: RETVAL: 0
549: STDOUT: 
549:  [PLAN]
549:  patient : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha
549:  target : 
549:  dose_out : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha
549:  debug : 0
549:  dose norm : 70
549:  
549:  [SETTINGS]
549:  flavor: a ** 
549:  homo_approx: n ** 
549:  ray_step: 1 ** 
549:  aperture_out:  ** 
549:  proj_dose_out:  ** 
549:  proj_img_out:  ** 
549:  range_comp_out:  ** 
549:  sigma_out:  ** 
549:  wed_out:  ** 
549:  beam_weight: 1 ** 
549:  
549:  [GEOMETRY & APERTURE]
549:  source: 0 -2000 0 ** 
549:  isocenter: 0 0 0 ** 
549:  vup: 0 0 1 ** 
549:  offset: 1500 ** 
549:  ap_center in pixels: 10 10 ** 
549:  i_res: 21 21 ** 
549:  spacing: 1 1 ** 
549:  source_size: 0 ** 
549:  ap_file_in:  ** 
549:  rc_file_in:  ** 
549:  smearing: 0 ** 
549:  
549:  [PEAK]
549:  E0: P0 
549:  spread: P0 
549:  weight: P0 
549: 
549: Start dose calculation Beam 1
549: Plan_calc::compute_beam_dose(beam) entry --
549: Setting RVRTS = 1
549: FPD = 347.500001, BPD = 647.528776
549: 21 21 301 
549: Setting RVRTS = 1
549: FPD = 347.500001, BPD = 647.528776
549: 21 21 301 
549: Priority 4. Prescription depths detected. Any target depth will not be considered.
549: prescription min/max: 70 mm, 90 mm.
549: 
549:  16 Mono-energetic BP used:
549: 111 110 109 108 107 106 105 104 103 102 101 100 99 98 97 96 
549: Adding peak to sobp (111.000000, 1.000000, 0.892866) [0.010000, 111.000000]
549: Adding peak to sobp (110.000000, 1.000000, 0.199040) [0.010000, 111.000000]
549: Adding peak to sobp (109.000000, 1.000000, 0.226753) [0.010000, 111.000000]
549: Adding peak to sobp (108.000000, 1.000000, 0.173442) [0.010000, 111.000000]
549: Adding peak to sobp (107.000000, 1.000000, 0.151005) [0.010000, 111.000000]
549: Adding peak to sobp (106.000000, 1.000000, 0.133983) [0.010000, 111.000000]
549: Adding peak to sobp (105.000000, 1.000000, 0.120333) [0.010000, 111.000000]
549: Adding peak to sobp (104.000000, 1.000000, 0.111431) [0.010000, 111.000000]
549: Adding peak to sobp (103.000000, 1.000000, 0.102203) [0.010000, 111.000000]
549: Adding peak to sobp (102.000000, 1.000000, 0.095667) [0.010000, 111.000000]
549: Adding peak to sobp (101.000000, 1.000000, 0.089522) [0.010000, 111.000000]
549: Adding peak to sobp (100.000000, 1.000000, 0.084473) [0.010000, 111.000000]
549: Adding peak to sobp (99.000000, 1.000000, 0.079452) [0.010000, 111.000000]
549: Adding peak to sobp (98.000000, 1.000000, 0.078322) [0.010000, 111.000000]
549: Adding peak to sobp (97.000000, 1.000000, 0.063062) [0.010000, 111.000000]
549: Adding peak to sobp (96.000000, 1.000000, 0.099306) [0.010000, 111.000000]
549: **** (1)
549: Raw dose at the maximum (0, -30, 0) : 0.999508 A.U.
549: Dose normalized at the maximum to 1 x 70 Gy.
549: Primary PB num. x, y: 21, 21, primary PB res. x, y: 1 PB/mm, 1 PB/mm
549: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha
549: Sigma:     0.000000 seconds
549: Calc:      1.000025 seconds
549: IO:        0.087208 seconds
549: Reformat:  0.000000 seconds
549: Misc:      0.006694 seconds
549: done.  
549: 
549: Total execution time : 1.128007 seconds.
549: 
549: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
549: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
549: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
549: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
549: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
549: 
549: Not an error
174/571 Test #549: proton-dose-1 .........................   Passed    1.43 sec
test 561
        Start 561: proton-dose-5d

561: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
561: Test timeout computed to be: 1500
561: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
561: PARMS is dose;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.txt
561: EXPECTED_ERRNO is 
552: RETVAL: 0
552: STDOUT: 
552:  [PLAN]
552:  patient : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha
552:  target : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha
552:  dose_out : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha
552:  debug : 0
552:  dose norm : 100
552:  
552:  [SETTINGS]
552:  flavor: a ** 
552:  homo_approx: n ** 
552:  ray_step: 1 ** 
552:  aperture_out:  ** 
552:  proj_dose_out:  ** 
552:  proj_img_out:  ** 
552:  range_comp_out:  ** 
552:  sigma_out:  ** 
552:  wed_out:  ** 
552:  beam_weight: 1 ** 
552:  
552:  [GEOMETRY & APERTURE]
552:  source: 0 -2000 0 ** 
552:  isocenter: 0 0 0 ** 
552:  vup: 0 0 1 ** 
552:  offset: 1500 ** 
552:  ap_center in pixels: 20 20 ** 
552:  i_res: 41 41 ** 
552:  spacing: 3.75 3.75 ** 
552:  source_size: 0 ** 
552:  ap_file_in:  ** 
552:  rc_file_in:  ** 
552:  smearing: 5 ** 
552:  
552:  [PEAK]
552:  E0: P0 
552:  spread: P0 
552:  weight: P0 
552: 
552: Start dose calculation Beam 1
552: Plan_calc::compute_beam_dose(beam) entry --
552: Setting RVRTS = 1
552: FPD = 347.500001, BPD = 649.116731
552: 41 41 302 
552: Setting RVRTS = 1
552: FPD = 347.500001, BPD = 649.116731
552: 41 41 302 
552: Setting RVRTS = 1
552: FPD = 347.500001, BPD = 649.116731
552: 41 41 302 
552: Priority 5. Target detected.
552: Computing beam modifiers for passive target
552: Compute target wepl_min_max...
552: Apply lateral smearing to the target...
552: Smearing = 5.000000, Smearing_ap = 3.750000
552: Strel size = (1,1), (3,3)
552: 0 1 0 
552: 1 1 1 
552: 0 1 0 
552: Apply proximal and distal ...
552: Compute max wed...
552: Compute the aperture...
552: Compute range compensator...
552: Max wed in the target is 117.554 mm.
552: Min wed in the target is 88.5526 mm.
552: ires = 41 41
552: proj_vol dim = 41 41 302
552: prescription min/max: 88.5526 mm, 117.554 mm.
552: 
552:  22 Mono-energetic BP used:
552: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 
552: Adding peak to sobp (130.000000, 1.000000, 0.895612) [0.010000, 140.000000]
552: Adding peak to sobp (129.000000, 1.000000, 0.143334) [0.010000, 140.000000]
552: Adding peak to sobp (128.000000, 1.000000, 0.216499) [0.010000, 140.000000]
552: Adding peak to sobp (127.000000, 1.000000, 0.160917) [0.010000, 140.000000]
552: Adding peak to sobp (126.000000, 1.000000, 0.140926) [0.010000, 140.000000]
552: Adding peak to sobp (125.000000, 1.000000, 0.124814) [0.010000, 140.000000]
552: Adding peak to sobp (124.000000, 1.000000, 0.113261) [0.010000, 140.000000]
552: Adding peak to sobp (123.000000, 1.000000, 0.102876) [0.010000, 140.000000]
552: Adding peak to sobp (122.000000, 1.000000, 0.096644) [0.010000, 140.000000]
552: Adding peak to sobp (121.000000, 1.000000, 0.089393) [0.010000, 140.000000]
552: Adding peak to sobp (120.000000, 1.000000, 0.083935) [0.010000, 140.000000]
552: Adding peak to sobp (119.000000, 1.000000, 0.078956) [0.010000, 140.000000]
552: Adding peak to sobp (118.000000, 1.000000, 0.074957) [0.010000, 140.000000]
552: Adding peak to sobp (117.000000, 1.000000, 0.071067) [0.010000, 140.000000]
552: Adding peak to sobp (116.000000, 1.000000, 0.067803) [0.010000, 140.000000]
552: Adding peak to sobp (115.000000, 1.000000, 0.064859) [0.010000, 140.000000]
552: Adding peak to sobp (114.000000, 1.000000, 0.062045) [0.010000, 140.000000]
552: Adding peak to sobp (113.000000, 1.000000, 0.059730) [0.010000, 140.000000]
552: Adding peak to sobp (112.000000, 1.000000, 0.057228) [0.010000, 140.000000]
552: Adding peak to sobp (111.000000, 1.000000, 0.056709) [0.010000, 140.000000]
552: Adding peak to sobp (110.000000, 1.000000, 0.045556) [0.010000, 140.000000]
552: Adding peak to sobp (109.000000, 1.000000, 0.079095) [0.010000, 140.000000]
552: **** (1)
552: Raw dose at the maximum (15, 15, 10) : 1.016 A.U.
552: Dose normalized at the maximum to 1 x 100%.
552: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm
552: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha
552: Sigma:     0.000000 seconds
552: Calc:      1.492674 seconds
552: IO:        0.098876 seconds
552: Reformat:  0.000000 seconds
552: Misc:      0.023582 seconds
552: done.  
552: 
552: Total execution time : 1.657137 seconds.
552: 
552: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
552: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
552: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
552: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
552: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
552: 
552: Not an error
175/571 Test #552: proton-dose-4a ........................   Passed    1.97 sec
test 564
        Start 564: proton-dose-6a

564: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-6a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
564: Test timeout computed to be: 1500
564: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
564: PARMS is dose;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.txt
564: EXPECTED_ERRNO is 
558: RETVAL: 0
558: STDOUT: 
558:  [PLAN]
558:  patient : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha
558:  target : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha
558:  dose_out : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha
558:  debug : 0
558:  dose norm : 100
558:  
558:  [SETTINGS]
558:  flavor: a ** 
558:  homo_approx: n ** 
558:  ray_step: 1 ** 
558:  aperture_out:  ** 
558:  proj_dose_out:  ** 
558:  proj_img_out:  ** 
558:  range_comp_out:  ** 
558:  sigma_out:  ** 
558:  wed_out:  ** 
558:  beam_weight: 1 ** 
558:  
558:  [GEOMETRY & APERTURE]
558:  source: 0 -2000 0 ** 
558:  isocenter: 0 0 0 ** 
558:  vup: 0 0 1 ** 
558:  offset: 1500 ** 
558:  ap_center in pixels: 20 20 ** 
558:  i_res: 41 41 ** 
558:  spacing: 3.75 3.75 ** 
558:  source_size: 0 ** 
558:  ap_file_in:  ** 
558:  rc_file_in:  ** 
558:  smearing: 5 ** 
558:  
558:  [PEAK]
558:  E0: P0 
558:  spread: P0 
558:  weight: P0 
558: 
558: Start dose calculation Beam 1
558: Plan_calc::compute_beam_dose(beam) entry --
558: Setting RVRTS = 1
558: FPD = 347.500001, BPD = 649.116731
558: 41 41 302 
558: Setting RVRTS = 1
558: FPD = 347.500001, BPD = 649.116731
558: 41 41 302 
558: Setting RVRTS = 1
558: FPD = 347.500001, BPD = 649.116731
558: 41 41 302 
558: Priority 5. Target detected.
558: Compute target wepl_min_max...
558: Apply lateral smearing to the target...
558: Smearing = 5.000000, Smearing_ap = 3.750000
558: Strel size = (1,1), (3,3)
558: 0 1 0 
558: 1 1 1 
558: 0 1 0 
558: Apply proximal and distal ...
558: Compute max wed...
558: Compute the aperture...
558: Max wed in the target is 117.554 mm.
558: Min wed in the target is 88.5523 mm.
558: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm.
558: Min and max energies for treating the PTV: 109 MeV and 130 MeV.
558: 
558:  22 Mono-energetic BP used:
558: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 
558: Optimization of the particle number map for any mono-energetic slice in progress...
558: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000]
558: Raw dose at the maximum (-15, 15, -10) : 1.01597 A.U.
558: Dose normalized at the maximum to 1 x 100%.
558: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm
558: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha
558: Sigma:     0.000000 seconds
558: Calc:      1.680102 seconds
558: IO:        0.106095 seconds
558: Reformat:  0.000000 seconds
558: Misc:      0.023942 seconds
558: done.  
558: 
558: Total execution time : 1.847934 seconds.
558: 
558: STDERR: 
558: Not an error
176/571 Test #558: proton-dose-5a ........................   Passed    2.17 sec
test 38
        Start  38: rect-10

38: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-200 50 -50 50 -50 50" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
38: Test timeout computed to be: 1500
38: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
38: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-200 50 -50 50 -50 50
38: EXPECTED_ERRNO is 
38: RETVAL: 0
38: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha
38: 
38: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
38: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
38: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
38: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
38: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
38: 
38: Not an error
177/571 Test  #38: rect-10 ...............................   Passed    0.34 sec
test 41
        Start  41: rect-11

41: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-11" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000;--rect-size;-40 60 -40 60 -40 60" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
41: Test timeout computed to be: 1500
41: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
41: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000;--rect-size;-40 60 -40 60 -40 60
41: EXPECTED_ERRNO is 
555: RETVAL: 0
555: STDOUT: 
555:  [PLAN]
555:  patient : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha
555:  target : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha
555:  dose_out : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha
555:  debug : 0
555:  dose norm : 100
555:  
555:  [SETTINGS]
555:  flavor: d ** 
555:  homo_approx: n ** 
555:  ray_step: 1 ** 
555:  aperture_out:  ** 
555:  proj_dose_out:  ** 
555:  proj_img_out:  ** 
555:  range_comp_out:  ** 
555:  sigma_out:  ** 
555:  wed_out:  ** 
555:  beam_weight: 1 ** 
555:  
555:  [GEOMETRY & APERTURE]
555:  source: 0 -2000 0 ** 
555:  isocenter: 0 0 0 ** 
555:  vup: 0 0 1 ** 
555:  offset: 1500 ** 
555:  ap_center in pixels: 20 20 ** 
555:  i_res: 41 41 ** 
555:  spacing: 3.75 3.75 ** 
555:  source_size: 0 ** 
555:  ap_file_in:  ** 
555:  rc_file_in:  ** 
555:  smearing: 5 ** 
555:  
555:  [PEAK]
555:  E0: P0 
555:  spread: P0 
555:  weight: P0 
555: 
555: Start dose calculation Beam 1
555: Plan_calc::compute_beam_dose(beam) entry --
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: Priority 5. Target detected.
555: Computing beam modifiers for passive target
555: Compute target wepl_min_max...
555: Apply lateral smearing to the target...
555: Smearing = 5.000000, Smearing_ap = 3.750000
555: Strel size = (1,1), (3,3)
555: 0 1 0 
555: 1 1 1 
555: 0 1 0 
555: Apply proximal and distal ...
555: Compute max wed...
555: Compute the aperture...
555: Compute range compensator...
555: Max wed in the target is 117.554 mm.
555: Min wed in the target is 88.5526 mm.
555: ires = 41 41
555: proj_vol dim = 41 41 302
555: prescription min/max: 88.5526 mm, 117.554 mm.
555: 
555:  22 Mono-energetic BP used:
555: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 
555: Adding peak to sobp (130.000000, 1.000000, 0.895612) [0.010000, 140.000000]
555: Adding peak to sobp (129.000000, 1.000000, 0.143334) [0.010000, 140.000000]
555: Adding peak to sobp (128.000000, 1.000000, 0.216499) [0.010000, 140.000000]
555: Adding peak to sobp (127.000000, 1.000000, 0.160917) [0.010000, 140.000000]
555: Adding peak to sobp (126.000000, 1.000000, 0.140926) [0.010000, 140.000000]
555: Adding peak to sobp (125.000000, 1.000000, 0.124814) [0.010000, 140.000000]
555: Adding peak to sobp (124.000000, 1.000000, 0.113261) [0.010000, 140.000000]
555: Adding peak to sobp (123.000000, 1.000000, 0.102876) [0.010000, 140.000000]
555: Adding peak to sobp (122.000000, 1.000000, 0.096644) [0.010000, 140.000000]
555: Adding peak to sobp (121.000000, 1.000000, 0.089393) [0.010000, 140.000000]
555: Adding peak to sobp (120.000000, 1.000000, 0.083935) [0.010000, 140.000000]
555: Adding peak to sobp (119.000000, 1.000000, 0.078956) [0.010000, 140.000000]
555: Adding peak to sobp (118.000000, 1.000000, 0.074957) [0.010000, 140.000000]
555: Adding peak to sobp (117.000000, 1.000000, 0.071067) [0.010000, 140.000000]
555: Adding peak to sobp (116.000000, 1.000000, 0.067803) [0.010000, 140.000000]
555: Adding peak to sobp (115.000000, 1.000000, 0.064859) [0.010000, 140.000000]
555: Adding peak to sobp (114.000000, 1.000000, 0.062045) [0.010000, 140.000000]
555: Adding peak to sobp (113.000000, 1.000000, 0.059730) [0.010000, 140.000000]
555: Adding peak to sobp (112.000000, 1.000000, 0.057228) [0.010000, 140.000000]
555: Adding peak to sobp (111.000000, 1.000000, 0.056709) [0.010000, 140.000000]
555: Adding peak to sobp (110.000000, 1.000000, 0.045556) [0.010000, 140.000000]
555: Adding peak to sobp (109.000000, 1.000000, 0.079095) [0.010000, 140.000000]
555: **** (1)
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.87445 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000474397 mm.
555: Global sigma computed - Global sigma_max = 2.87445 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.86823 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000479245 mm.
555: Global sigma computed - Global sigma_max = 2.86823 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.81247 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000485151 mm.
555: Global sigma computed - Global sigma_max = 2.81247 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.80639 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000490292 mm.
555: Global sigma computed - Global sigma_max = 2.80639 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.74919 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000495583 mm.
555: Global sigma computed - Global sigma_max = 2.74919 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.69289 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000501994 mm.
555: Global sigma computed - Global sigma_max = 2.69289 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.68596 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000506613 mm.
555: Global sigma computed - Global sigma_max = 2.68596 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.62886 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000512341 mm.
555: Global sigma computed - Global sigma_max = 2.62886 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.57127 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000517222 mm.
555: Global sigma computed - Global sigma_max = 2.57127 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.56307 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000523251 mm.
555: Global sigma computed - Global sigma_max = 2.56307 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.50537 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000528418 mm.
555: Global sigma computed - Global sigma_max = 2.50537 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.49685 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000534772 mm.
555: Global sigma computed - Global sigma_max = 2.49685 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.4384 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000540249 mm.
555: Global sigma computed - Global sigma_max = 2.4384 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.42949 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000546957 mm.
555: Global sigma computed - Global sigma_max = 2.42949 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.37035 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000552773 mm.
555: Global sigma computed - Global sigma_max = 2.37035 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.36098 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000559867 mm.
555: Global sigma computed - Global sigma_max = 2.36098 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.30119 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000566053 mm.
555: Global sigma computed - Global sigma_max = 2.30119 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.29132 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000573569 mm.
555: Global sigma computed - Global sigma_max = 2.29132 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.23096 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000580162 mm.
555: Global sigma computed - Global sigma_max = 2.23096 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.22053 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000588138 mm.
555: Global sigma computed - Global sigma_max = 2.22053 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.15969 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000595178 mm.
555: Global sigma computed - Global sigma_max = 2.15969 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: sigma_img: 41 41 302
555: dim: 41 41 302
555: Sigma patient computed - sigma_pt_max = 2.14863 mm.
555: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
555: Sigma range compensator computed - sigma_rc_max = 0.000603663 mm.
555: Global sigma computed - Global sigma_max = 2.14863 mm.
555: Setting RVRTS = 1
555: FPD = 347.500001, BPD = 649.116731
555: 41 41 302 
555: Raw dose at the maximum (0, 5, 0) : 10.689 A.U.
555: Dose normalized at the maximum to 1 x 100%.
555: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm
555: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha
555: Sigma:     0.105777 seconds
555: Calc:      2.329214 seconds
555: IO:        0.101723 seconds
555: Reformat:  0.012906 seconds
555: Misc:      0.024330 seconds
555: done.  
555: 
555: Total execution time : 2.590881 seconds.
555: 
555: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
555: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
555: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
555: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
555: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
555: 
555: Not an error
178/571 Test #555: proton-dose-4d ........................   Passed    2.88 sec
test 50
        Start  50: rect-19

50: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-19" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-150 150 -150 150 -150 150" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
50: Test timeout computed to be: 1500
50: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
50: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-150 150 -150 150 -150 150
50: EXPECTED_ERRNO is 
41: RETVAL: 0
41: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha
41: 
41: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
41: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
41: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
41: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
41: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
41: 
41: Not an error
179/571 Test  #41: rect-11 ...............................   Passed    0.32 sec
test 52
        Start  52: rectarr-01

52: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-01" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-5 5 5 15 -5 5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
52: Test timeout computed to be: 1500
52: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
52: PARMS is synth;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-5 5 5 15 -5 5
52: EXPECTED_ERRNO is 
50: RETVAL: 0
50: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha
50: 
50: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
50: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
50: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
50: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
50: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
50: 
50: Not an error
180/571 Test  #50: rect-19 ...............................   Passed    0.33 sec
test 53
        Start  53: rectarr-02

53: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-02" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-10 0 5 15 -5 5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
53: Test timeout computed to be: 1500
53: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
53: PARMS is synth;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-10 0 5 15 -5 5
53: EXPECTED_ERRNO is 
52: RETVAL: 0
52: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha
52: 
52: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
52: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
52: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
52: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
52: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
52: 
52: Not an error
181/571 Test  #52: rectarr-01 ............................   Passed    0.34 sec
test 54
        Start  54: rectarr-m-01

54: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-m-01" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--fixed;rectarr-01-a.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 -20 0 -13 13" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
54: Test timeout computed to be: 1500
54: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
54: PARMS is synth;--fixed;rectarr-01-a.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 -20 0 -13 13
54: EXPECTED_ERRNO is 
564: RETVAL: 0
564: STDOUT: 
564:  [PLAN]
564:  patient : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha
564:  target : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha
564:  dose_out : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha
564:  debug : 0
564:  dose norm : 100
564:  
564:  [SETTINGS]
564:  flavor: a ** 
564:  homo_approx: n ** 
564:  ray_step: 1 ** 
564:  aperture_out:  ** 
564:  proj_dose_out:  ** 
564:  proj_img_out:  ** 
564:  range_comp_out:  ** 
564:  sigma_out:  ** 
564:  wed_out:  ** 
564:  beam_weight: 1 ** 
564:  
564:  [GEOMETRY & APERTURE]
564:  source: 0 -2000 0 ** 
564:  isocenter: 0 0 0 ** 
564:  vup: 0 0 1 ** 
564:  offset: 1500 ** 
564:  ap_center in pixels: 20 20 ** 
564:  i_res: 41 41 ** 
564:  spacing: 3.75 3.75 ** 
564:  source_size: 0 ** 
564:  ap_file_in:  ** 
564:  rc_file_in:  ** 
564:  smearing: 5 ** 
564:  
564:  [PEAK]
564:  E0: P0 
564:  spread: P0 
564:  weight: P0 
564: 
564: Start dose calculation Beam 1
564: Plan_calc::compute_beam_dose(beam) entry --
564: Setting RVRTS = 1
564: FPD = 347.500001, BPD = 649.116731
564: 41 41 302 
564: Setting RVRTS = 1
564: FPD = 347.500001, BPD = 649.116731
564: 41 41 302 
564: Setting RVRTS = 1
564: FPD = 347.500001, BPD = 649.116731
564: 41 41 302 
564: Priority 5. Target detected.
564: Compute target wepl_min_max...
564: Apply lateral smearing to the target...
564: Smearing = 5.000000, Smearing_ap = 3.750000
564: Strel size = (1,1), (3,3)
564: 0 1 0 
564: 1 1 1 
564: 0 1 0 
564: Apply proximal and distal ...
564: Compute max wed...
564: Compute the aperture...
564: Max wed in the target is 117.554 mm.
564: Min wed in the target is 88.5523 mm.
564: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm.
564: Min and max energies for treating the PTV: 109 MeV and 130 MeV.
564: 
564:  22 Mono-energetic BP used:
564: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 
564: Optimization of the particle number map for any mono-energetic slice in progress...
564: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000]
564: Raw dose at the maximum (-15, 15, -10) : 1.01597 A.U.
564: Dose normalized at the maximum to 1 x 100%.
564: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm
564: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha
564: Sigma:     0.000000 seconds
564: Calc:      1.335677 seconds
564: IO:        0.106914 seconds
564: Reformat:  0.000000 seconds
564: Misc:      0.006904 seconds
564: done.  
564: 
564: Total execution time : 1.474509 seconds.
564: 
564: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
564: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
564: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
564: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
564: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
564: 
564: Not an error
182/571 Test #564: proton-dose-6a ........................   Passed    1.67 sec
test 55
        Start  55: rectarr-m-02

55: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-m-02" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--fixed;rectarr-01-a.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 0 20 -13 13" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
55: Test timeout computed to be: 1500
53: RETVAL: 0
53: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha
53: 
53: STDERR: 
55: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
55: PARMS is synth;--fixed;rectarr-01-a.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 0 20 -13 13
55: EXPECTED_ERRNO is 
53: Not an error
183/571 Test  #53: rectarr-02 ............................   Passed    0.37 sec
test 60
        Start  60: roi-1

60: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=roi-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;0 300 -300 300 -300 300" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
60: Test timeout computed to be: 1500
60: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
60: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;0 300 -300 300 -300 300
60: EXPECTED_ERRNO is 
54: RETVAL: 0
54: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha
54: 
54: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
54: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
54: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
54: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
54: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
54: 
55: RETVAL: 0
55: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha
55: 
55: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
55: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
55: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
55: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
55: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
55: 
54: Not an error
184/571 Test  #54: rectarr-m-01 ..........................   Passed    0.33 sec
test 64
        Start  64: sphere-4

64: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-4" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;150 150 150" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
64: Test timeout computed to be: 1500
64: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
64: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;150 150 150
64: EXPECTED_ERRNO is 
55: Not an error
185/571 Test  #55: rectarr-m-02 ..........................   Passed    0.21 sec
test 76
        Start  76: vf-zero-stats

76: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-zero-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
76: Test timeout computed to be: 1500
561: RETVAL: 0
561: STDOUT: 
561:  [PLAN]
561:  patient : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha
561:  target : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha
561:  dose_out : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha
561:  debug : 0
561:  dose norm : 100
561:  
561:  [SETTINGS]
561:  flavor: d ** 
561:  homo_approx: n ** 
561:  ray_step: 1 ** 
561:  aperture_out:  ** 
561:  proj_dose_out:  ** 
561:  proj_img_out:  ** 
561:  range_comp_out:  ** 
561:  sigma_out:  ** 
561:  wed_out:  ** 
561:  beam_weight: 1 ** 
561:  
561:  [GEOMETRY & APERTURE]
561:  source: 0 -2000 0 ** 
561:  isocenter: 0 0 0 ** 
561:  vup: 0 0 1 ** 
561:  offset: 1500 ** 
561:  ap_center in pixels: 20 20 ** 
561:  i_res: 41 41 ** 
561:  spacing: 3.75 3.75 ** 
561:  source_size: 0 ** 
561:  ap_file_in:  ** 
561:  rc_file_in:  ** 
561:  smearing: 5 ** 
561:  
561:  [PEAK]
561:  E0: P0 
561:  spread: P0 
561:  weight: P0 
561: 
561: Start dose calculation Beam 1
561: Plan_calc::compute_beam_dose(beam) entry --
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: Priority 5. Target detected.
561: Compute target wepl_min_max...
561: Apply lateral smearing to the target...
561: Smearing = 5.000000, Smearing_ap = 3.750000
561: Strel size = (1,1), (3,3)
561: 0 1 0 
561: 1 1 1 
561: 0 1 0 
561: Apply proximal and distal ...
561: Compute max wed...
561: Compute the aperture...
561: Max wed in the target is 117.554 mm.
561: Min wed in the target is 88.5523 mm.
561: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm.
561: Min and max energies for treating the PTV: 109 MeV and 130 MeV.
561: 
561:  22 Mono-energetic BP used:
561: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 
561: Optimization of the particle number map for any mono-energetic slice in progress...
561: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000]
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.87445 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.87445 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.86823 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.86823 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.81247 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.81247 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.80639 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.80639 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.74919 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.74919 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.69289 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.69289 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.68596 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.68596 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.62886 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.62886 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.57127 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.57127 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.56307 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.56307 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.50537 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.50537 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.49685 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.49685 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.4384 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.4384 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.42949 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.42949 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.37035 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.37035 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.36098 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.36098 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.30119 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.30119 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.29132 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.29132 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.23096 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.23096 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.22053 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.22053 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.15969 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.15969 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: sigma_img: 41 41 302
561: dim: 41 41 302
561: Sigma patient computed - sigma_pt_max = 2.14863 mm.
561: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0)
561: Sigma range compensator computed - sigma_rc_max = 0 mm.
561: Global sigma computed - Global sigma_max = 2.14863 mm.
561: Setting RVRTS = 1
561: FPD = 347.500001, BPD = 649.116731
561: 41 41 302 
561: Raw dose at the maximum (0, 5, 0) : 10.689 A.U.
561: Dose normalized at the maximum to 1 x 100%.
561: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm
561: Trying to write mebs in /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-pn.txt
561: Ap 41 41
561: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha
561: Sigma:     0.124180 seconds
561: Calc:      1.955625 seconds
561: IO:        0.144490 seconds
561: Reformat:  0.014393 seconds
561: Misc:      0.018374 seconds
561: done.  
561: 
561: Total execution time : 2.257775 seconds.
561: 
561: STDERR: 
76: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
76: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha
76: EXPECTED_ERRNO is 
60: RETVAL: 0
60: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha
60: 
60: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
60: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
60: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
60: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
60: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
60: 
76: RETVAL: 0
76: STDOUT: Min:                  0.000      0.000      0.000
76: Mean:                 0.000      0.000      0.000
76: Max:                  0.000      0.000      0.000
76: Mean abs:             0.000      0.000      0.000
76: Ave len:              0.000
76: Jacobian:        MINJAC  1 MAXJAC  1
76: Energy:        MINDIL             0 MAXDIL    0
76:                MAXSTRAIN          0 TOTSTRAIN 0
76: Second derivatives: MINSECDER          0 MAXSECDER          0
76:                     AVESECDER          0 INTSECDER          0
76: Max second derivative at: (1 1 1)
76: 
76: STDERR: 
561: Not an error
186/571 Test #561: proton-dose-5d ........................   Passed    2.62 sec
test 78
        Start  78: vf-trans-1-stats

78: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
78: Test timeout computed to be: 1500
60: Not an error
187/571 Test  #60: roi-1 .................................   Passed    0.33 sec
test 80
        Start  80: vf-trans-2-stats

80: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-2-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
80: Test timeout computed to be: 1500
76: Not an error
188/571 Test  #76: vf-zero-stats .........................   Passed    0.20 sec
test 82
        Start  82: vf-radial-1-stats

82: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-radial-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
82: Test timeout computed to be: 1500
64: RETVAL: 0
64: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha
64: 
64: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
64: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
64: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
64: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
64: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
64: 
82: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
82: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha
82: EXPECTED_ERRNO is 
78: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
78: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha
78: EXPECTED_ERRNO is 
80: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
80: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha
80: EXPECTED_ERRNO is 
64: Not an error
189/571 Test  #64: sphere-4 ..............................   Passed    0.29 sec
test 84
        Start  84: plm-compare-a

84: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
84: Test timeout computed to be: 1500
84: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
84: PARMS is compare;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
84: EXPECTED_ERRNO is 
82: RETVAL: 0
82: STDOUT: Min:                 -9.993     -9.993     -9.993
82: Mean:                 0.000      0.000      0.000
82: Max:                  9.993      9.993      9.993
82: Mean abs:             5.157      5.157      5.157
82: Ave len:              9.998
82: Jacobian:        MINJAC  1.05079 MAXJAC  2.37037
82: Energy:        MINDIL        0.0502 MAXDIL    1
82:                MAXSTRAIN        1.5 TOTSTRAIN 5055.08
82: Second derivatives: MINSECDER          0 MAXSECDER      0.114
82:                     AVESECDER   0.000227 INTSECDER   2.84e+04
82: Max second derivative at: (20 19 17)
82: 
82: STDERR: 
80: RETVAL: 0
80: STDOUT: Min:                  0.000     10.000      0.000
80: Mean:                 0.000     10.000      0.000
80: Max:                  0.000     10.000      0.000
80: Mean abs:             0.000     10.000      0.000
80: Ave len:             10.000
80: Jacobian:        MINJAC  1 MAXJAC  1
80: Energy:        MINDIL             0 MAXDIL    0
80:                MAXSTRAIN          0 TOTSTRAIN 0
80: Second derivatives: MINSECDER          0 MAXSECDER          0
80:                     AVESECDER          0 INTSECDER          0
80: Max second derivative at: (1 1 1)
80: 
80: STDERR: 
82: Not an error
190/571 Test  #82: vf-radial-1-stats .....................   Passed    0.23 sec
test 86
        Start  86: plm-compare-b

86: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
86: Test timeout computed to be: 1500
80: Not an error
191/571 Test  #80: vf-trans-2-stats ......................   Passed    0.25 sec
test 88
        Start  88: plm-compare-c

88: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;--mask;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
88: Test timeout computed to be: 1500
86: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
86: PARMS is compare;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha
86: EXPECTED_ERRNO is 
78: RETVAL: 0
78: STDOUT: Min:                 10.000      0.000      0.000
78: Mean:                10.000      0.000      0.000
78: Max:                 10.000      0.000      0.000
78: Mean abs:            10.000      0.000      0.000
78: Ave len:             10.000
78: Jacobian:        MINJAC  1 MAXJAC  1
78: Energy:        MINDIL             0 MAXDIL    0
78:                MAXSTRAIN          0 TOTSTRAIN 0
78: Second derivatives: MINSECDER          0 MAXSECDER          0
78:                     AVESECDER          0 INTSECDER          0
78: Max second derivative at: (1 1 1)
78: 
78: STDERR: 
88: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
88: PARMS is compare;--mask;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha
88: EXPECTED_ERRNO is 
84: RETVAL: 0
84: STDOUT: MIN -558.201904 AVE 7.769665 MAX 558.680786
84: MAE 85.100204 MSE 18945.890625
84: DIF 54872 NUM 54872
84: 
84: STDERR: 
78: Not an error
192/571 Test  #78: vf-trans-1-stats ......................   Passed    0.35 sec
test 91
        Start  91: plm-diff-a-stats

91: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
91: Test timeout computed to be: 1500
91: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
91: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha
91: EXPECTED_ERRNO is 
84: Not an error
193/571 Test  #84: plm-compare-a .........................   Passed    0.37 sec
test 94
        Start  94: plm-diff-b-stats

94: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
94: Test timeout computed to be: 1500
94: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
94: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha
94: EXPECTED_ERRNO is 
86: RETVAL: 0
86: STDOUT: Min:                 10.000    -10.000      0.000
86: Mean:                10.000    -10.000      0.000
86: Max:                 10.000    -10.000      0.000
86: Mean abs:            10.000     10.000      0.000
86: Ave len:             14.142
86: 
86: STDERR: 
88: RETVAL: 0
88: STDOUT: Mask enabled.  512 / 54872 voxels inside mask
88: Min:                 10.000    -10.000      0.000
88: Mean:                10.000    -10.000      0.000
88: Max:                 10.000    -10.000      0.000
88: Mean abs:            10.000     10.000      0.000
88: Ave len:             14.142
88: Min (mask):          10.000    -10.000      0.000
88: Mean (mask):         10.000    -10.000      0.000
88: Max (mask):          10.000    -10.000      0.000
88: Mean abs (mask):     10.000     10.000      0.000
88: Ave len (mask):      14.142
88: 
88: STDERR: 
86: Not an error
194/571 Test  #86: plm-compare-b .........................   Passed    0.37 sec
test 96
        Start  96: demons-a

96: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=demons-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/demons" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=-m;50;-s;3;-f;5 5 5;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
96: Test timeout computed to be: 1500
88: Not an error
195/571 Test  #88: plm-compare-c .........................   Passed    0.36 sec
test 99
        Start  99: drr-a-stats

99: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_0010.pfm" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
99: Test timeout computed to be: 1500
91: RETVAL: 0
91: STDOUT: MIN -558.201904 AVE 7.769665 MAX 558.680786 NONZERO 54872 NUMVOX 54872
91: 
91: STDERR: 
96: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/demons
96: PARMS is -m;50;-s;3;-f;5 5 5;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
96: EXPECTED_ERRNO is 
99: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
99: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_0010.pfm
99: EXPECTED_ERRNO is 
91: Not an error
196/571 Test  #91: plm-diff-a-stats ......................   Passed    0.33 sec
test 102
        Start 102: drr-b-stats

102: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;drr-b/out_0010.pfm" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
102: Test timeout computed to be: 1500
102: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
102: PARMS is stats;drr-b/out_0010.pfm
102: EXPECTED_ERRNO is 
94: RETVAL: 0
94: STDOUT: Min:                 10.000    -10.000      0.000
94: Mean:                10.000    -10.000      0.000
94: Max:                 10.000    -10.000      0.000
94: Mean abs:            10.000     10.000      0.000
94: Ave len:             14.142
94: Jacobian:        MINJAC  1 MAXJAC  1
94: Energy:        MINDIL             0 MAXDIL    0
94:                MAXSTRAIN          0 TOTSTRAIN 0
94: Second derivatives: MINSECDER          0 MAXSECDER          0
94:                     AVESECDER          0 INTSECDER          0
94: Max second derivative at: (1 1 1)
94: 
94: STDERR: 
94: Not an error
197/571 Test  #94: plm-diff-b-stats ......................   Passed    0.33 sec
test 105
        Start 105: drr-c-stats

105: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;drr-c/out_0010.pfm" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
105: Test timeout computed to be: 1500
105: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
105: PARMS is stats;drr-c/out_0010.pfm
105: EXPECTED_ERRNO is 
99: RETVAL: 0
99: STDOUT: Image center: 63.5 63.5
99: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 
99: MIN 0.000000 AVE 0.000135 MAX 0.050109 NUM 16384
99: 
99: STDERR: 
102: RETVAL: 0
102: STDOUT: Image center: 63.5 63.5
102: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 
102: MIN 0.000000 AVE 0.000138 MAX 0.049634 NUM 16384
102: 
102: STDERR: 
99: Not an error
198/571 Test  #99: drr-a-stats ...........................   Passed    0.29 sec
test 108
        Start 108: fdk-cpu-a-stats

108: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
108: Test timeout computed to be: 1500
108: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
108: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha
108: EXPECTED_ERRNO is 
105: RETVAL: 0
105: STDOUT: Image center: 63.5 63.5
105: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 
105: MIN 0.000000 AVE 0.000125 MAX 0.050494 NUM 16384
105: 
105: STDERR: 
102: Not an error
199/571 Test #102: drr-b-stats ...........................   Passed    0.33 sec
test 111
        Start 111: fdk-cpu-d-stats

111: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
111: Test timeout computed to be: 1500
111: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
111: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha
111: EXPECTED_ERRNO is 
105: Not an error
200/571 Test #105: drr-c-stats ...........................   Passed    0.29 sec
test 114
        Start 114: landmark-warp-a-stats-1

114: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
114: Test timeout computed to be: 1500
114: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
114: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha
114: EXPECTED_ERRNO is 
108: RETVAL: 0
108: STDOUT: MIN -1000.000000 AVE -999.859619 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600
108: 
108: STDERR: 
108: Not an error
201/571 Test #108: fdk-cpu-a-stats .......................   Passed    0.37 sec
test 116
        Start 116: landmark-warp-a-stats-2

116: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
116: Test timeout computed to be: 1500
116: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
116: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha
116: EXPECTED_ERRNO is 
96: RETVAL: 0
96: STDOUT: Fixed = /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
96: Moving = /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
96: 
96: Reading the static/reference image
96: reading /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
96: 
96: Reading the moving image 
96: reading /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
96: volume_calc_grad complete.
96: kerx: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 
96: kery: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 
96: kerz: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 
96: MSE [   0] 18945.6 (1.000) [ 0.012 secs]
96: MSE [   1] 18945.6 (1.000) [ 0.009 secs]
96: MSE [   2] 18980.9 (0.995) [ 0.009 secs]
96: MSE [   3] 18885.4 (0.970) [ 0.009 secs]
96: MSE [   4] 18084.9 (0.966) [ 0.009 secs]
96: MSE [   5] 17034.7 (0.966) [ 0.009 secs]
96: MSE [   6] 15346.9 (0.946) [ 0.011 secs]
96: MSE [   7] 14427.2 (0.940) [ 0.011 secs]
96: MSE [   8] 13561.7 (0.935) [ 0.009 secs]
96: MSE [   9] 12732.2 (0.928) [ 0.009 secs]
96: MSE [  10] 12276.6 (0.923) [ 0.022 secs]
96: MSE [  11] 11827.4 (0.920) [ 0.009 secs]
96: MSE [  12] 11399.6 (0.920) [ 0.009 secs]
96: MSE [  13] 11078.4 (0.919) [ 0.009 secs]
96: MSE [  14] 10787.4 (0.918) [ 0.009 secs]
96: MSE [  15] 10317.6 (0.915) [ 0.009 secs]
96: MSE [  16] 9735.2 (0.913) [ 0.009 secs]
96: MSE [  17] 9362.8 (0.911) [ 0.009 secs]
96: MSE [  18] 8947.5 (0.909) [ 0.009 secs]
96: MSE [  19] 8534.4 (0.899) [ 0.009 secs]
96: MSE [  20] 7953.5 (0.895) [ 0.009 secs]
96: MSE [  21] 7656.6 (0.893) [ 0.009 secs]
96: MSE [  22] 7364.0 (0.892) [ 0.009 secs]
96: MSE [  23] 7174.2 (0.892) [ 0.009 secs]
96: MSE [  24] 6956.3 (0.891) [ 0.009 secs]
96: MSE [  25] 6512.1 (0.890) [ 0.009 secs]
96: MSE [  26] 6079.0 (0.890) [ 0.009 secs]
96: MSE [  27] 5716.1 (0.889) [ 0.011 secs]
96: MSE [  28] 5454.8 (0.889) [ 0.009 secs]
96: MSE [  29] 5201.5 (0.889) [ 0.009 secs]
96: MSE [  30] 5013.3 (0.888) [ 0.009 secs]
96: MSE [  31] 4840.3 (0.888) [ 0.009 secs]
96: MSE [  32] 4652.0 (0.887) [ 0.009 secs]
96: MSE [  33] 4400.6 (0.886) [ 0.009 secs]
96: MSE [  34] 4085.1 (0.883) [ 0.009 secs]
96: MSE [  35] 3778.0 (0.882) [ 0.009 secs]
96: MSE [  36] 3521.6 (0.882) [ 0.009 secs]
96: MSE [  37] 3308.2 (0.882) [ 0.009 secs]
96: MSE [  38] 3126.2 (0.881) [ 0.009 secs]
96: MSE [  39] 2988.9 (0.881) [ 0.009 secs]
96: MSE [  40] 2836.4 (0.880) [ 0.009 secs]
96: MSE [  41] 2736.6 (0.881) [ 0.009 secs]
96: MSE [  42] 2623.3 (0.880) [ 0.009 secs]
96: MSE [  43] 2426.1 (0.880) [ 0.009 secs]
96: MSE [  44] 2271.4 (0.879) [ 0.009 secs]
96: MSE [  45] 2112.0 (0.880) [ 0.009 secs]
96: MSE [  46] 1926.2 (0.879) [ 0.009 secs]
96: MSE [  47] 1775.3 (0.880) [ 0.009 secs]
96: MSE [  48] 1621.0 (0.878) [ 0.009 secs]
96: MSE [  49] 1504.3 (0.878) [ 0.009 secs]
96: Time for 50 iterations = 0.485897 (0.009718 sec / it)
96: Min:                  1.248     -5.701     -5.701
96: Mean:                 3.443      0.016      0.016
96: Max:                  7.379      5.617      5.617
96: Mean abs:             3.443      1.874      1.874
96: Ave len:              4.646
96: Direction cosines: vin = 1.000000 0.000000 0.000000 ...
96: vf = 1.000000 0.000000 0.000000 ...
96: spac: vin = 1.315789 1.315789 1.315789 ...
96: vf = 1.315789 1.315789 1.315789 ...
96: proj: vin = 0.760000 -0.000000 0.000000 ...
96: vf = 0.760000 -0.000000 0.000000 ...
96: step: vin = 1.315789 0.000000 0.000000 ...
96: vf = 1.315789 0.000000 0.000000 ...
96: 
96: STDERR: 
114: RETVAL: 0
114: STDOUT: MIN -1000.000000 AVE -991.799744 MAX 0.000000 NONZERO 54494 NUMVOX 54872
114: 
114: STDERR: 
111: RETVAL: 0
111: STDOUT: MIN -1000.000000 AVE -999.848633 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600
111: 
111: STDERR: 
114: Not an error
202/571 Test #114: landmark-warp-a-stats-1 ...............   Passed    0.35 sec
test 119
        Start 119: landmark-warp-b-stats-1

119: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
119: Test timeout computed to be: 1500
96: Not an error
203/571 Test  #96: demons-a ..............................   Passed    0.80 sec
test 121
        Start 121: landmark-warp-b-stats-2

121: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
121: Test timeout computed to be: 1500
111: Not an error
204/571 Test #111: fdk-cpu-d-stats .......................   Passed    0.41 sec
test 124
        Start 124: landmark-warp-c-stats-1

124: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
124: Test timeout computed to be: 1500
119: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
119: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha
119: EXPECTED_ERRNO is 
121: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
121: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha
121: EXPECTED_ERRNO is 
124: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
124: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha
124: EXPECTED_ERRNO is 
116: RETVAL: 0
116: STDOUT: Min:                -62.465     -4.112     -0.000
116: Mean:               -22.960      0.011      0.000
116: Max:                 16.278      4.199      0.000
116: Mean abs:            25.589      1.505      0.000
116: Ave len:             25.766
116: Jacobian:        MINJAC  1.12686 MAXJAC  1.15895
116: Energy:        MINDIL         0.128 MAXDIL    0.157995
116:                MAXSTRAIN      0.171 TOTSTRAIN 7133.92
116: Second derivatives: MINSECDER   2.92e-10 MAXSECDER   0.000557
116:                     AVESECDER   7.93e-07 INTSECDER       99.2
116: Max second derivative at: (24 15 22)
116: 
116: STDERR: 
116: Not an error
205/571 Test #116: landmark-warp-a-stats-2 ...............   Passed    0.35 sec
test 126
        Start 126: landmark-warp-c-stats-2

126: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
126: Test timeout computed to be: 1500
124: RETVAL: 0
124: STDOUT: MIN -1000.000122 AVE -991.665894 MAX 0.000000 NONZERO 54484 NUMVOX 54872
124: 
124: STDERR: 
126: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
126: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha
126: EXPECTED_ERRNO is 
119: RETVAL: 0
119: STDOUT: MIN -1000.000122 AVE -992.005493 MAX 0.000000 NONZERO 54512 NUMVOX 54872
119: 
119: STDERR: 
124: Not an error
206/571 Test #124: landmark-warp-c-stats-1 ...............   Passed    0.27 sec
test 130
        Start 130: plm-add-a-stats

130: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
130: Test timeout computed to be: 1500
121: RETVAL: 0
121: STDOUT: Min:                -30.672     -0.800     -0.000
121: Mean:                -1.500      0.018      0.000
121: Max:                  0.000      1.506      0.000
121: Mean abs:             1.500      0.042      0.000
121: Ave len:              1.502
121: Jacobian:        MINJAC  0.647844 MAXJAC  1.23013
121: Energy:        MINDIL        -0.353 MAXDIL    0.231386
121:                MAXSTRAIN      0.259 TOTSTRAIN 179.715
121: Second derivatives: MINSECDER          0 MAXSECDER     0.0443
121:                     AVESECDER   0.000472 INTSECDER   5.89e+04
121: Max second derivative at: (17 23 15)
121: 
121: STDERR: 
130: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
130: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd
130: EXPECTED_ERRNO is 
119: Not an error
207/571 Test #119: landmark-warp-b-stats-1 ...............   Passed    0.35 sec
test 133
        Start 133: plm-add-b-stats

133: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
133: Test timeout computed to be: 1500
133: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
133: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd
133: EXPECTED_ERRNO is 
121: Not an error
208/571 Test #121: landmark-warp-b-stats-2 ...............   Passed    0.39 sec
test 136
        Start 136: plm-add-vf-a-stats

136: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
136: Test timeout computed to be: 1500
136: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
136: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd
136: EXPECTED_ERRNO is 
126: RETVAL: 0
126: STDOUT: Min:                -27.760     -0.518     -0.000
126: Mean:                -1.562      0.019      0.000
126: Max:                 -0.000      1.063      0.000
126: Mean abs:             1.562      0.037      0.000
126: Ave len:              1.563
126: Jacobian:        MINJAC  0.698803 MAXJAC  1.18578
126: Energy:        MINDIL        -0.302 MAXDIL    0.186636
126:                MAXSTRAIN      0.205 TOTSTRAIN 143.999
126: Second derivatives: MINSECDER   2.31e-17 MAXSECDER     0.0141
126:                     AVESECDER   0.000315 INTSECDER   3.94e+04
126: Max second derivative at: (17 22 16)
126: 
126: STDERR: 
130: RETVAL: 0
130: STDOUT: MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872
130: 
130: STDERR: 
126: Not an error
209/571 Test #126: landmark-warp-c-stats-2 ...............   Passed    0.37 sec
test 139
        Start 139: plm-add-vf-b-stats

139: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
139: Test timeout computed to be: 1500
130: Not an error
210/571 Test #130: plm-add-a-stats .......................   Passed    0.33 sec
test 142
        Start 142: plm-adjust-a-stats

142: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
142: Test timeout computed to be: 1500
139: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
139: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd
139: EXPECTED_ERRNO is 
133: RETVAL: 0
133: STDOUT: MIN -500.000000 AVE -500.000000 MAX -500.000000 NONZERO 54872 NUMVOX 54872
133: 
133: STDERR: 
142: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
142: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd
142: EXPECTED_ERRNO is 
136: RETVAL: 0
136: STDOUT: Min:                 20.000      0.000      0.000
136: Mean:                20.000      0.000      0.000
136: Max:                 20.000      0.000      0.000
136: Mean abs:            20.000      0.000      0.000
136: Ave len:             20.000
136: Jacobian:        MINJAC  1 MAXJAC  1
136: Energy:        MINDIL             0 MAXDIL    0
136:                MAXSTRAIN          0 TOTSTRAIN 0
136: Second derivatives: MINSECDER          0 MAXSECDER          0
136:                     AVESECDER          0 INTSECDER          0
136: Max second derivative at: (1 1 1)
136: 
136: STDERR: 
133: Not an error
211/571 Test #133: plm-add-b-stats .......................   Passed    0.35 sec
test 145
        Start 145: plm-adjust-b-stats

145: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
145: Test timeout computed to be: 1500
145: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
145: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd
145: EXPECTED_ERRNO is 
136: Not an error
212/571 Test #136: plm-add-vf-a-stats ....................   Passed    0.38 sec
test 148
        Start 148: plm-adjust-c-stats

148: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
148: Test timeout computed to be: 1500
148: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
148: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd
148: EXPECTED_ERRNO is 
145: RETVAL: 0
145: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872
145: 
145: STDERR: 
139: RETVAL: 0
139: STDOUT: Min:                  5.000      5.000      0.000
139: Mean:                 5.000      5.000      0.000
139: Max:                  5.000      5.000      0.000
139: Mean abs:             5.000      5.000      0.000
139: Ave len:              7.071
139: Jacobian:        MINJAC  1 MAXJAC  1
139: Energy:        MINDIL             0 MAXDIL    0
139:                MAXSTRAIN          0 TOTSTRAIN 0
139: Second derivatives: MINSECDER          0 MAXSECDER          0
139:                     AVESECDER          0 INTSECDER          0
139: Max second derivative at: (1 1 1)
139: 
139: STDERR: 
145: Not an error
213/571 Test #145: plm-adjust-b-stats ....................   Passed    0.19 sec
test 151
        Start 151: plm-adjust-d-stats

151: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
151: Test timeout computed to be: 1500
142: RETVAL: 0
142: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872
142: 
142: STDERR: 
151: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
151: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd
151: EXPECTED_ERRNO is 
139: Not an error
142: Not an error
214/571 Test #139: plm-add-vf-b-stats ....................   Passed    0.34 sec
test 154
        Start 154: plm-adjust-e-stats

154: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-e-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
154: Test timeout computed to be: 1500
215/571 Test #142: plm-adjust-a-stats ....................   Passed    0.33 sec
test 157
        Start 157: plm-adjust-f-stats

157: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-f-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
157: Test timeout computed to be: 1500
154: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
154: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd
154: EXPECTED_ERRNO is 
157: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
157: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd
157: EXPECTED_ERRNO is 
148: RETVAL: 0
148: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872
148: 
148: STDERR: 
151: RETVAL: 0
151: STDOUT: MIN -800.000000 AVE -782.961060 MAX -600.000000 NONZERO 54872 NUMVOX 54872
151: 
151: STDERR: 
148: Not an error
216/571 Test #148: plm-adjust-c-stats ....................   Passed    0.37 sec
test 160
        Start 160: plm-adjust-g-stats

160: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-g-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
160: Test timeout computed to be: 1500
160: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
160: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd
160: EXPECTED_ERRNO is 
154: RETVAL: 0
154: STDOUT: MIN -1500.000000 AVE -1298.865601 MAX 987.531189 NONZERO 54872 NUMVOX 54872
154: 
154: STDERR: 
151: Not an error
217/571 Test #151: plm-adjust-d-stats ....................   Passed    0.34 sec
test 163
        Start 163: plm-adjust-h-stats

163: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-h-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
163: Test timeout computed to be: 1500
157: RETVAL: 0
157: STDOUT: MIN -0.107574 AVE -0.019504 MAX 0.207060 NONZERO 54872 NUMVOX 54872
157: 
157: STDERR: 
163: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
163: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd
163: EXPECTED_ERRNO is 
154: Not an error
157: Not an error
218/571 Test #154: plm-adjust-e-stats ....................   Passed    0.33 sec
test 166
        Start 166: plm-adjust-i-stats

166: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-i-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
166: Test timeout computed to be: 1500
219/571 Test #157: plm-adjust-f-stats ....................   Passed    0.33 sec
test 169
        Start 169: plm-adjust-j-stats

169: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-j-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
169: Test timeout computed to be: 1500
166: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
166: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd
166: EXPECTED_ERRNO is 
169: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
169: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd
169: EXPECTED_ERRNO is 
160: RETVAL: 0
160: STDOUT: MIN -0.025301 AVE -0.000000 MAX 0.287606 NONZERO 54872 NUMVOX 54872
160: 
160: STDERR: 
160: Not an error
220/571 Test #160: plm-adjust-g-stats ....................   Passed    0.25 sec
test 172
        Start 172: plm-boundary-a-stats

172: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
172: Test timeout computed to be: 1500
172: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
172: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd
172: EXPECTED_ERRNO is 
163: RETVAL: 0
163: STDOUT: MIN -0.283680 AVE -0.248078 MAX 0.156631 NONZERO 54872 NUMVOX 54872
163: 
163: STDERR: 
169: RETVAL: 0
169: STDOUT: MIN -1000.000000 AVE -921.627502 MAX -4.987521 NONZERO 54872 NUMVOX 54872
169: 
169: STDERR: 
166: RETVAL: 0
166: STDOUT: MIN -1000.000000 AVE -921.594055 MAX -4.987521 NONZERO 54872 NUMVOX 54872
166: 
166: STDERR: 
163: Not an error
221/571 Test #163: plm-adjust-h-stats ....................   Passed    0.33 sec
test 175
        Start 175: plm-boundary-b-stats

175: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
175: Test timeout computed to be: 1500
175: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
175: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd
175: EXPECTED_ERRNO is 
169: Not an error
166: Not an error
222/571 Test #169: plm-adjust-j-stats ....................   Passed    0.37 sec
test 178
        Start 178: plm-boundary-c-stats

178: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
178: Test timeout computed to be: 1500
223/571 Test #166: plm-adjust-i-stats ....................   Passed    0.37 sec
test 181
        Start 181: plm-boundary-d-stats

181: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
181: Test timeout computed to be: 1500
178: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
178: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd
178: EXPECTED_ERRNO is 
172: RETVAL: 0
172: STDOUT: MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000
172: 
172: STDERR: 
181: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
181: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd
181: EXPECTED_ERRNO is 
172: Not an error
224/571 Test #172: plm-boundary-a-stats ..................   Passed    0.40 sec
test 184
        Start 184: plm-boundary-e-stats

184: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-e-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
184: Test timeout computed to be: 1500
184: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
184: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd
184: EXPECTED_ERRNO is 
175: RETVAL: 0
175: STDOUT: MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000
175: 
175: STDERR: 
178: RETVAL: 0
178: STDOUT: MIN 0.000000 AVE 0.105000 MAX 1.000000 NONZERO 840 NUMVOX 8000
178: 
178: STDERR: 
181: RETVAL: 0
181: STDOUT: MIN 0.000000 AVE 2.614500 MAX 56.000000 NONZERO 1056 NUMVOX 8000
181: 
181: STDERR: 
175: Not an error
225/571 Test #175: plm-boundary-b-stats ..................   Passed    0.38 sec
test 187
        Start 187: plm-convert-dicom-a-stats

187: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
187: Test timeout computed to be: 1500
187: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
187: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha
187: EXPECTED_ERRNO is 
184: RETVAL: 0
184: STDOUT: MIN 0.000000 AVE 2.142000 MAX 56.000000 NONZERO 840 NUMVOX 8000
184: 
184: STDERR: 
178: Not an error
226/571 Test #178: plm-boundary-c-stats ..................   Passed    0.39 sec
test 190
        Start 190: plm-convert-dicom-b-stats

190: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/dicom_info" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
190: Test timeout computed to be: 1500
181: Not an error
227/571 Test #181: plm-boundary-d-stats ..................   Passed    0.39 sec
test 193
        Start 193: plm-convert-dicom-c-stats

193: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
193: Test timeout computed to be: 1500
190: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/dicom_info
190: PARMS is --input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm
190: EXPECTED_ERRNO is 
193: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
193: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha
193: EXPECTED_ERRNO is 
184: Not an error
228/571 Test #184: plm-boundary-e-stats ..................   Passed    0.36 sec
test 199
        Start 199: plm-convert-dicom-donut-a-stats

199: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
199: Test timeout computed to be: 1500
190: RETVAL: 0
190: STDOUT: Reading input file: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm
190: Image Type = DERIVED\SECONDARY\AXIAL 
190: Instance Creation Date = 20211229
190: Instance Creation Time = 135239
190: SOP Class UID = 1.2.840.10008.5.1.4.1.1.2
190: SOP Instance UID = 1.2.826.0.1.3680043.8.274.1.1.313262592.3370645.1640785968.68712
190: Study Date = 20211229
190: Study Time = 135239
190: Accession Number = 
190: Modality = CT
190: Manufacturer = Plastimatch 
190: Referring Physician's Name = 
190: Station Name = 
190: Study Description = 
190: Series Description = 
190: Operators' Name = 
190: Manufacturer's Model Name = Plastimatch 
190: Patient's Name = ANONYMOUS 
190: Patient ID = PL657783804880996 
190: Patient's Birth Date = 
190: Patient's Sex = O 
190: Slice Thickness = 13.157895 
190: KVP = 
190: Device Serial Number = 
190: Software Version(s) = 1.9.3 
190: Patient Position = FFS 
190: Study Instance UID = 1.2.826.0.1.3680043.8.274.1.1.313262592.3370645.1640785968.68710
190: Series Instance UID = 1.2.826.0.1.3680043.8.274.1.1.313262592.3370645.1640785968.68712
190: Study ID = 
190: Acquisition Number = 
190: Instance Number = 0 
190: Image Position (Patient) = -243.421051\-243.421051\-243.421051 
190: Image Orientation (Patient) = 1.000000\0.000000\0.000000\0.000000\1.000000\0.000000 
190: Frame of Reference UID = 1.2.826.0.1.3680043.8.274.1.1.313262592.3370645.1640785968.68710
190: Position Reference Indicator = SP
190: Slice Location = -243.421051 
190: Samples per Pixel = 1
190: Photometric Interpretation = MONOCHROME2 
190: Rows = 38
190: Columns = 38
190: Pixel Spacing = 13.157895\13.157895 
190: Bits Allocated = 16
190: Bits Stored = 16
190: High Bit = 15
190: Pixel Representation = 1
190: Window Center = 40
190: Window Width = 400 
190: Rescale Intercept = -1000.000000
190: Rescale Slope = 1.000000
190: Rescale Type = HU
190: 
190: STDERR: 
199: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
199: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd
199: EXPECTED_ERRNO is 
187: RETVAL: 0
187: STDOUT: SS_IMAGE: At most 16 structures
187: S    0  NVOX    1648003
187: S    1  NVOX          0
187: S    2  NVOX          0
187: S    3  NVOX          0
187: S    4  NVOX          0
187: S    5  NVOX          0
187: S    6  NVOX          0
187: S    7  NVOX          0
187: S    8  NVOX          0
187: S    9  NVOX          0
187: S   10  NVOX          0
187: S   11  NVOX          0
187: S   12  NVOX          0
187: S   13  NVOX          0
187: S   14  NVOX          0
187: S   15  NVOX          0
187: 
187: STDERR: 
190: Not an error
229/571 Test #190: plm-convert-dicom-b-stats .............   Passed    0.24 sec
test 202
        Start 202: plm-convert-dicom-donut-b-stats

202: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
202: Test timeout computed to be: 1500
202: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
202: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd
202: EXPECTED_ERRNO is 
193: RETVAL: 0
193: STDOUT: MIN 0.000000 AVE 0.000280 MAX 1.000000 NONZERO 280 NUMVOX 1000000
193: 
193: STDERR: 
187: Not an error
230/571 Test #187: plm-convert-dicom-a-stats .............   Passed    0.43 sec
test 206
        Start 206: plm-convert-cxt-stats

206: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-cxt-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
206: Test timeout computed to be: 1500
206: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
206: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha
206: EXPECTED_ERRNO is 
193: Not an error
231/571 Test #193: plm-convert-dicom-c-stats .............   Passed    0.38 sec
test 208
        Start 208: plm-convert-prefix-fcsv

208: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-prefix-fcsv" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--input-ss-list;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt;--output-prefix-fcsv;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv;--simplify-perc;0.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
208: Test timeout computed to be: 1500
199: RETVAL: 0
199: STDOUT: SS_IMAGE: At most 16 structures
199: S    0  NVOX       2623
199: S    1  NVOX          0
199: S    2  NVOX          0
199: S    3  NVOX          0
199: S    4  NVOX          0
199: S    5  NVOX          0
199: S    6  NVOX          0
199: S    7  NVOX          0
199: S    8  NVOX          0
199: S    9  NVOX          0
199: S   10  NVOX          0
199: S   11  NVOX          0
199: S   12  NVOX          0
199: S   13  NVOX          0
199: S   14  NVOX          0
199: S   15  NVOX          0
199: 
199: STDERR: 
208: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
208: PARMS is convert;--input-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--input-ss-list;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt;--output-prefix-fcsv;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv;--simplify-perc;0.5
208: EXPECTED_ERRNO is 
199: Not an error
232/571 Test #199: plm-convert-dicom-donut-a-stats .......   Passed    0.38 sec
test 210
        Start 210: plm-convert-dose-scale-stats

210: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dose-scale-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
210: Test timeout computed to be: 1500
202: RETVAL: 0
202: STDOUT: SS_IMAGE: At most 16 structures
202: S    0  NVOX       1924
202: S    1  NVOX          0
202: S    2  NVOX          0
202: S    3  NVOX          0
202: S    4  NVOX          0
202: S    5  NVOX          0
202: S    6  NVOX          0
202: S    7  NVOX          0
202: S    8  NVOX          0
202: S    9  NVOX          0
202: S   10  NVOX          0
202: S   11  NVOX          0
202: S   12  NVOX          0
202: S   13  NVOX          0
202: S   14  NVOX          0
202: S   15  NVOX          0
202: 
202: STDERR: 
210: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
210: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha
210: EXPECTED_ERRNO is 
202: Not an error
233/571 Test #202: plm-convert-dicom-donut-b-stats .......   Passed    0.35 sec
test 213
        Start 213: plm-crop-a-stats

213: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
213: Test timeout computed to be: 1500
213: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
213: PARMS is header;plm-crop-a.mha
213: EXPECTED_ERRNO is 
206: RETVAL: 0
206: STDOUT: SS_IMAGE: At most 16 structures
206: S    0  NVOX    1648003
206: S    1  NVOX          0
206: S    2  NVOX          0
206: S    3  NVOX          0
206: S    4  NVOX          0
206: S    5  NVOX          0
206: S    6  NVOX          0
206: S    7  NVOX          0
206: S    8  NVOX          0
206: S    9  NVOX          0
206: S   10  NVOX          0
206: S   11  NVOX          0
206: S   12  NVOX          0
206: S   13  NVOX          0
206: S   14  NVOX          0
206: S   15  NVOX          0
206: 
206: STDERR: 
206: Not an error
234/571 Test #206: plm-convert-cxt-stats .................   Passed    0.39 sec
test 216
        Start 216: plm-crop-b-stats

216: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-b.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
216: Test timeout computed to be: 1500
208: RETVAL: 0
208: STDOUT: Trying to load ss_list: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt
208: Setting PIH from M_SS_IMG
208: PIH is:
208: Origin = -243.4211 -243.4211 -243.4211
208: Size = 38 38 38
208: Spacing = 13.1579 13.1579 13.1579
208: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
208: Rt_study_warp: Convert ss_img to cxt.
208: Doing extraction
208: Rt_study_warp: Apply dicom_dir.
208: Rt_study_warp: Set geometry from PIH.
208: Rt_study_warp: Set rasterization geometry.
208: rast_dim = 512 512 7
208: rast_offset = -55.2632 -55.2632 -46.0526
208: rast_spacing = 0.215872 0.215872 13.1579
208: Rt_study_warp: warp and save ss.
208: Warp_and_save_ss: save_ss_img
208: save_ss_img: save_prefix_fcsv
208: save_ss_img: save_prefix_fcsv (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv)
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/sphere-7.fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (1).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (2).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (3).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (4).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (5).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (6).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (7).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (8).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (9).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (10).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (11).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (12).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (13).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (14).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (15).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (16).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (17).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (18).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (19).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (20).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (21).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (22).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (23).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (24).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (25).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (26).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (27).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (28).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (29).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (30).fcsv
208: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (31).fcsv
208: Finished!
208: 
208: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
208: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
208: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
208: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
208: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
208: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
208: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
208: 
216: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
216: PARMS is header;plm-crop-b.mha
216: EXPECTED_ERRNO is 
210: RETVAL: 0
210: STDOUT: MIN 0.000000 AVE 0.294533 MAX 77.699997 NONZERO 208 NUMVOX 54872
210: 
210: STDERR: 
208: Not an error
235/571 Test #208: plm-convert-prefix-fcsv ...............   Passed    0.44 sec
test 219
        Start 219: plm-crop-c-stats

219: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-c.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
219: Test timeout computed to be: 1500
213: RETVAL: 0
213: STDOUT: Type = float
213: Planes = 1
213: Origin = -18.4211 -21.0526 -15.7895
213: Size = 11 16 3
213: Spacing = 1.3158 1.3158 1.3158
213: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
213: 
213: STDERR: 
219: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
219: PARMS is header;plm-crop-c.mha
219: EXPECTED_ERRNO is 
210: Not an error
236/571 Test #210: plm-convert-dose-scale-stats ..........   Passed    0.36 sec
test 221
        Start 221: plm-dice-a

221: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
221: Test timeout computed to be: 1500
221: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
221: PARMS is dice;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha
221: EXPECTED_ERRNO is 
213: Not an error
237/571 Test #213: plm-crop-a-stats ......................   Passed    0.38 sec
test 223
        Start 223: plm-dice-b

223: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
223: Test timeout computed to be: 1500
223: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
223: PARMS is dice;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha
223: EXPECTED_ERRNO is 
216: RETVAL: 0
216: STDOUT: Type = float
216: Planes = 1
216: Origin = -14.4737 3.9474 -11.8421
216: Size = 19 11 4
216: Spacing = 1.3158 1.3158 1.3158
216: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
216: 
216: STDERR: 
219: RETVAL: 0
219: STDOUT: Type = float
219: Planes = 1
219: Origin = -9.2105 -9.2105 -9.2105
219: Size = 15 15 15
219: Spacing = 1.3158 1.3158 1.3158
219: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
219: 
219: STDERR: 
221: RETVAL: 0
221: STDOUT: CENTER_OF_MASS
221: ref	   4.18425e-05	   7.62939e-06	   7.62939e-06
221: cmp	       19.7369	   7.62939e-06	   7.62939e-06
221: TP:           384
221: TN:         54296
221: FN:           128
221: FP:            64
221: DICE:      0.800000
221: SE:      0.750000
221: SP:      0.998823
221: 
221: STDERR: 
219: Not an error
216: Not an error
238/571 Test #219: plm-crop-c-stats ......................   Passed    0.32 sec
test 225
        Start 225: plm-dice-c

225: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--hausdorff;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
225: Test timeout computed to be: 1500
239/571 Test #216: plm-crop-b-stats ......................   Passed    0.43 sec
test 231
        Start 231: plm-dice-d

231: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--hausdorff;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
231: Test timeout computed to be: 1500
221: Not an error
225: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
225: PARMS is dice;--hausdorff;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha
225: EXPECTED_ERRNO is 
240/571 Test #221: plm-dice-a ............................   Passed    0.31 sec
test 237
        Start 237: plm-dice-e

237: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-e" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--all;--zcrop;0 0;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
237: Test timeout computed to be: 1500
231: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
231: PARMS is dice;--hausdorff;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha
231: EXPECTED_ERRNO is 
237: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
237: PARMS is dice;--all;--zcrop;0 0;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd
237: EXPECTED_ERRNO is 
223: RETVAL: 0
223: STDOUT: Time = 0.001403 seconds
223: Time = 0.004450 seconds
223: CENTER_OF_MASS
223: ref	   8.39233e-05	   8.47711e-06	   8.47711e-06
223: cmp	   8.39233e-05	   8.47711e-06	   8.47711e-06
223: TP:           729
223: TN:        103094
223: FN:             0
223: FP:             0
223: DICE:      1.000000
223: SE:      1.000000
223: SP:      1.000000
223: 
223: STDERR: 
225: RETVAL: 0
225: STDOUT: Hausdorff distance = 26.315790
225: Avg average Hausdorff distance = 3.406955
225: Max average Hausdorff distance = 4.934211
225: Percent (0.95) Hausdorff distance = 19.736843
225: Hausdorff distance (boundary) = 26.315790
225: Avg average Hausdorff distance (boundary) = 7.115030
225: Max average Hausdorff distance (boundary) = 8.534851
225: Percent (0.95) Hausdorff distance (boundary) = 26.315790
225: 
225: STDERR: 
223: Not an error
241/571 Test #223: plm-dice-b ............................   Passed    0.43 sec
test 240
        Start 240: plm-dice-f

240: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-f" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--all;--zcrop;10 10;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
240: Test timeout computed to be: 1500
231: RETVAL: 0
231: STDOUT: Hausdorff distance = 45.580288
231: Avg average Hausdorff distance = 7.072703
231: Max average Hausdorff distance = 12.121115
231: Percent (0.95) Hausdorff distance = 22.694012
231: Hausdorff distance (boundary) = 45.580288
231: Avg average Hausdorff distance (boundary) = 14.894061
231: Max average Hausdorff distance (boundary) = 18.384613
231: Percent (0.95) Hausdorff distance (boundary) = 32.894737
231: 
231: STDERR: 
240: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
240: PARMS is dice;--all;--zcrop;10 10;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd
240: EXPECTED_ERRNO is 
225: Not an error
231: Not an error
242/571 Test #225: plm-dice-c ............................   Passed    0.38 sec
test 244
        Start 244: plm-dmap-b

244: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;danielsson;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha;--absolute-distance" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
244: Test timeout computed to be: 1500
243/571 Test #231: plm-dice-d ............................   Passed    0.38 sec
test 246
        Start 246: plm-dvh-a

246: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dvh-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dvh;--input-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-dose;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
246: Test timeout computed to be: 1500
237: RETVAL: 0
237: STDOUT: CENTER_OF_MASS
237: ref	             0	             0	           7.5
237: cmp	             0	             0	             5
237: TP:         22120
237: TN:          6300
237: FN:          1580
237: FP:             0
237: DICE:      0.965517
237: SE:      0.933333
237: SP:      1.000000
237: Hausdorff distance = 4.000000
237: Avg average Hausdorff distance = 0.067568
237: Max average Hausdorff distance = 0.135135
237: Percent (0.95) Hausdorff distance = 0.500000
237: Hausdorff distance (boundary) = 4.000000
237: Avg average Hausdorff distance (boundary) = 0.244043
237: Max average Hausdorff distance (boundary) = 0.334483
237: Percent (0.95) Hausdorff distance (boundary) = 2.500000
237: 
237: STDERR: 
244: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
244: PARMS is dmap;--algorithm;danielsson;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha;--absolute-distance
244: EXPECTED_ERRNO is 
246: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
246: PARMS is dvh;--input-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-dose;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv
246: EXPECTED_ERRNO is 
237: Not an error
244/571 Test #237: plm-dice-e ............................   Passed    0.43 sec
test 249
        Start 249: plm-dvh-b

249: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dvh-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dvh;--input-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-ss-list;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--input-dose;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
249: Test timeout computed to be: 1500
249: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
249: PARMS is dvh;--input-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-ss-list;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--input-dose;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv
249: EXPECTED_ERRNO is 
240: RETVAL: 0
240: STDOUT: CENTER_OF_MASS
240: ref	             0	             0	           7.5
240: cmp	             0	             0	           7.5
240: TP:         17380
240: TN:          4620
240: FN:             0
240: FP:             0
240: DICE:      1.000000
240: SE:      1.000000
240: SP:      1.000000
240: Hausdorff distance = 0.000000
240: Avg average Hausdorff distance = 0.000000
240: Max average Hausdorff distance = 0.000000
240: Percent (0.95) Hausdorff distance = 0.000000
240: Hausdorff distance (boundary) = 0.000000
240: Avg average Hausdorff distance (boundary) = 0.000000
240: Max average Hausdorff distance (boundary) = 0.000000
240: Percent (0.95) Hausdorff distance (boundary) = 0.000000
240: 
240: STDERR: 
240: Not an error
245/571 Test #240: plm-dice-f ............................   Passed    0.38 sec
test 253
        Start 253: plm-fill-a-stats

253: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-fill-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
253: Test timeout computed to be: 1500
253: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
253: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha
253: EXPECTED_ERRNO is 
244: RETVAL: 0
244: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha
244: 
244: STDERR: 
246: RETVAL: 0
246: STDOUT: Creating Histogram...
246: Your Histogram will have 256 bins and will be 0.500000 Gy large
246: checking voxel size...
246: 13.1579 13.1579 13.1579
246: 13.1579 13.1579 13.1579
246: Dose and ss-img have the same size. Resample not necessary.
246: 
246: STDERR: 
244: Not an error
246/571 Test #244: plm-dmap-b ............................   Passed    0.34 sec
test 256
        Start 256: plm-mask-a-stats

256: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-mask-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
256: Test timeout computed to be: 1500
249: RETVAL: 0
249: STDOUT: Trying to load ss_list: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt
249: Creating Histogram...
249: Your Histogram will have 256 bins and will be 0.500000 Gy large
249: checking voxel size...
249: 13.1579 13.1579 13.1579
249: 13.1579 13.1579 13.1579
249: Dose and ss-img have the same size. Resample not necessary.
249: 
249: STDERR: 
256: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
256: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha
256: EXPECTED_ERRNO is 
246: Not an error
247/571 Test #246: plm-dvh-a .............................   Passed    0.37 sec
test 259
        Start 259: plm-gamma-a-stats

259: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
259: Test timeout computed to be: 1500
259: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
259: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha
259: EXPECTED_ERRNO is 
249: Not an error
248/571 Test #249: plm-dvh-b .............................   Passed    0.36 sec
test 262
        Start 262: plm-gamma-b-stats

262: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
262: Test timeout computed to be: 1500
262: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
262: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha
262: EXPECTED_ERRNO is 
253: RETVAL: 0
253: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872
253: 
253: STDERR: 
253: Not an error
249/571 Test #253: plm-fill-a-stats ......................   Passed    0.36 sec
test 264
        Start 264: plm-gamma-c

264: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
264: Test timeout computed to be: 1500
256: RETVAL: 0
256: STDOUT: MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872
256: 
256: STDERR: 
264: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
264: PARMS is gamma;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha
264: EXPECTED_ERRNO is 
259: RETVAL: 0
259: STDOUT: MIN 0.000000 AVE 0.023500 MAX 0.666667 NONZERO 400 NUMVOX 8000
259: 
259: STDERR: 
256: Not an error
250/571 Test #256: plm-mask-a-stats ......................   Passed    0.34 sec
test 266
        Start 266: plm-gamma-d

266: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha;--ref-only-threshold;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
266: Test timeout computed to be: 1500
262: RETVAL: 0
262: STDOUT: MIN 0.000000 AVE 0.250000 MAX 2.000000 NONZERO 1000 NUMVOX 8000
262: 
262: STDERR: 
259: Not an error
251/571 Test #259: plm-gamma-a-stats .....................   Passed    0.33 sec
test 269
        Start 269: plm-maximum-a-stats

269: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-maximum-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
269: Test timeout computed to be: 1500
266: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
266: PARMS is gamma;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha;--ref-only-threshold;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha
266: EXPECTED_ERRNO is 
269: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
269: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd
269: EXPECTED_ERRNO is 
262: Not an error
252/571 Test #262: plm-gamma-b-stats .....................   Passed    0.32 sec
test 272
        Start 272: plm-multiply-a-stats

272: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
272: Test timeout computed to be: 1500
272: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
272: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd
272: EXPECTED_ERRNO is 
264: RETVAL: 0
264: STDOUT: Gamma dose max is 70.000000
264: Time = 0.001199 seconds
264: Gamma calculation is under progress...
264: analysis threshold = 7.00 Gy 
264: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha
264: Pass rate = 90.719998 %
264: 
264: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
264: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
264: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
264: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
264: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
264: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
264: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
264: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
264: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
264: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
264: 
269: RETVAL: 0
269: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872
269: 
269: STDERR: 
266: RETVAL: 0
266: STDOUT: Gamma dose max is 70.000000
266: Time = 0.001121 seconds
266: Gamma calculation is under progress...
266: analysis threshold = 7.00 Gy 
266: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha
266: Pass rate = 89.999998 %
266: 
266: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
266: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
266: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
266: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
266: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
266: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
266: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
266: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
266: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
266: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
266: 
264: Not an error
253/571 Test #264: plm-gamma-c ...........................   Passed    0.41 sec
test 275
        Start 275: plm-multiply-vf-a-stats

275: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-vf-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
275: Test timeout computed to be: 1500
272: RETVAL: 0
272: STDOUT: MIN -0.000000 AVE 0.000000 MAX -0.000000 NONZERO 0 NUMVOX 54872
272: 
272: STDERR: 
269: Not an error
254/571 Test #269: plm-maximum-a-stats ...................   Passed    0.32 sec
test 279
        Start 279: plm-reg-align-center-stats

279: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-align-center-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
279: Test timeout computed to be: 1500
266: Not an error
255/571 Test #266: plm-gamma-d ...........................   Passed    0.35 sec
test 282
        Start 282: plm-reg-itk-translation-stats

282: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-translation-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
282: Test timeout computed to be: 1500
275: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
275: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd
275: EXPECTED_ERRNO is 
282: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
282: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha
282: EXPECTED_ERRNO is 
279: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
279: PARMS is compare;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha
279: EXPECTED_ERRNO is 
272: Not an error
256/571 Test #272: plm-multiply-a-stats ..................   Passed    0.35 sec
test 285
        Start 285: plm-reg-itk-rigid-a-stats-1

285: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-intermediate-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
285: Test timeout computed to be: 1500
285: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
285: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-intermediate-img.mha
285: EXPECTED_ERRNO is 
279: RETVAL: 0
279: STDOUT: MIN -0.000061 AVE 0.000001 MAX 0.000061
279: MAE 0.000002 MSE 0.000000
279: DIF 2274 NUM 54872
279: 
279: STDERR: 
279: Not an error
257/571 Test #279: plm-reg-align-center-stats ............   Passed    0.26 sec
test 287
        Start 287: plm-reg-itk-rigid-a-stats-2

287: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
287: Test timeout computed to be: 1500
275: RETVAL: 0
275: STDOUT: Min:                100.000    100.000    100.000
275: Mean:               100.000    100.000    100.000
275: Max:                100.000    100.000    100.000
275: Mean abs:           100.000    100.000    100.000
275: Ave len:            173.205
275: Jacobian:        MINJAC  1 MAXJAC  1
275: Energy:        MINDIL             0 MAXDIL    0
275:                MAXSTRAIN          0 TOTSTRAIN 0
275: Second derivatives: MINSECDER          0 MAXSECDER          0
275:                     AVESECDER          0 INTSECDER          0
275: Max second derivative at: (1 1 1)
275: 
275: STDERR: 
282: RETVAL: 0
282: STDOUT: MIN -999.914246 AVE -677.557922 MAX 0.000000 NONZERO 43320 NUMVOX 54872
282: 
282: STDERR: 
287: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
287: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha
287: EXPECTED_ERRNO is 
275: Not an error
282: Not an error
258/571 Test #282: plm-reg-itk-translation-stats .........   Passed    0.34 sec
test 290
        Start 290: plm-reg-itk-similarity-stats-1

290: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-intermediate-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
290: Test timeout computed to be: 1500
259/571 Test #275: plm-multiply-vf-a-stats ...............   Passed    0.36 sec
test 292
        Start 292: plm-reg-itk-similarity-stats-2

292: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
292: Test timeout computed to be: 1500
285: RETVAL: 0
285: STDOUT: MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872
285: 
285: STDERR: 
290: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
290: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-intermediate-img.mha
290: EXPECTED_ERRNO is 
292: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
292: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-img.mha
292: EXPECTED_ERRNO is 
285: Not an error
260/571 Test #285: plm-reg-itk-rigid-a-stats-1 ...........   Passed    0.36 sec
test 295
        Start 295: plm-reg-itk-bspline-stats-1

295: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-bspline-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
295: Test timeout computed to be: 1500
295: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
295: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha
295: EXPECTED_ERRNO is 
287: RETVAL: 0
287: STDOUT: MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872
287: 
287: STDERR: 
292: RETVAL: 0
292: STDOUT: MIN -1000.000000 AVE -940.684265 MAX 0.000000 NONZERO 52716 NUMVOX 54872
292: 
292: STDERR: 
287: Not an error
261/571 Test #287: plm-reg-itk-rigid-a-stats-2 ...........   Passed    0.33 sec
test 299
        Start 299: plm-reg-itk-demons-stats-2

299: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
299: Test timeout computed to be: 1500
299: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
299: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha
299: EXPECTED_ERRNO is 
290: RETVAL: 0
290: STDOUT: MIN -1000.000000 AVE -981.187012 MAX 0.000000 NONZERO 54152 NUMVOX 54872
290: 
290: STDERR: 
292: Not an error
262/571 Test #292: plm-reg-itk-similarity-stats-2 ........   Passed    0.29 sec
test 301
        Start 301: plm-reg-itk-demons-diff

301: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-diff" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
301: Test timeout computed to be: 1500
301: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
301: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.txt
301: EXPECTED_ERRNO is 
290: Not an error
263/571 Test #290: plm-reg-itk-similarity-stats-1 ........   Passed    0.34 sec
test 303
        Start 303: plm-reg-itk-demons-logd

303: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-logd" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
303: Test timeout computed to be: 1500
303: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
303: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.txt
303: EXPECTED_ERRNO is 
295: RETVAL: 0
295: STDOUT: MIN -999.992249 AVE -763.817810 MAX 0.000000 NONZERO 48346 NUMVOX 54872
295: 
295: STDERR: 
295: Not an error
264/571 Test #295: plm-reg-itk-bspline-stats-1 ...........   Passed    0.39 sec
test 305
        Start 305: plm-reg-itk-demons-sym-logd

305: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-sym-logd" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
305: Test timeout computed to be: 1500
305: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
305: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.txt
305: EXPECTED_ERRNO is 
299: RETVAL: 0
299: STDOUT: MIN -999.914856 AVE -754.915161 MAX 0.000000 NONZERO 47950 NUMVOX 54872
299: 
299: STDERR: 
299: Not an error
265/571 Test #299: plm-reg-itk-demons-stats-2 ............   Passed    0.37 sec
test 308
        Start 308: plm-bsp-mse-c-stats

308: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
308: Test timeout computed to be: 1500
308: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
308: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha
308: EXPECTED_ERRNO is 
308: RETVAL: 0
308: STDOUT: MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872
308: 
308: STDERR: 
308: Not an error
266/571 Test #308: plm-bsp-mse-c-stats ...................   Passed    0.21 sec
test 311
        Start 311: plm-bsp-mse-g-stats

311: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-g-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
311: Test timeout computed to be: 1500
311: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
311: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha
311: EXPECTED_ERRNO is 
301: RETVAL: 0
301: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
301: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
301: Launching registration worker thread
301: Inside registration worker thread
301: Doing registration stage
301: [1] xf_in->m_type = 0, xf_out->m_type = 0
301: Ready to start registration.
301: MSE [   0] 18945.891 [ 0.059 secs]
301: MSE [   1]  9795.787 [ 0.059 secs]
301: MSE [   2]  3911.273 [ 0.061 secs]
301: MSE [   3]  1186.045 [ 0.062 secs]
301: MSE [   4]   314.763 [ 0.068 secs]
301: Done with registration.  Writing output...
301: Deformation stats (out)
301: VF_MAX = 102.433   VF_AVG = 31.2783
301: [2] xf_out->m_type = 8, xf_in->m_type = 0
301: ** Registration worker thread finished.
301: Warping...
301: plm_warp_itk: xform_to_itk_vf
301: plm_warp_itk: convert_to_itk
301: plm_warp_itk: warping...
301: Saving image...
301: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff-img.mha
301: Saving vf...
301: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff-vf.mha
301: Load:   0.0514629
301: Run:    0.311649
301: Save:   0.0527649
301: Total:  0.415877
301: Finished!
301: 
301: STDERR: 
301: Not an error
267/571 Test #301: plm-reg-itk-demons-diff ...............   Passed    0.70 sec
test 314
        Start 314: plm-bsp-mse-h-stats

314: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-h-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
314: Test timeout computed to be: 1500
314: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
314: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha
314: EXPECTED_ERRNO is 
303: RETVAL: 0
303: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
303: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
303: Launching registration worker thread
303: Inside registration worker thread
303: Doing registration stage
303: [1] xf_in->m_type = 0, xf_out->m_type = 0
303: Ready to start registration.
303: MSE [   0] 18945.891 [ 0.051 secs]
303: MSE [   1]  9788.487 [ 0.056 secs]
303: MSE [   2]  4038.212 [ 0.080 secs]
303: MSE [   3]  1283.245 [ 0.082 secs]
303: MSE [   4]   392.878 [ 0.068 secs]
303: Done with registration.  Writing output...
303: Deformation stats (out)
303: VF_MAX = 112.668   VF_AVG = 32.7138
303: [2] xf_out->m_type = 8, xf_in->m_type = 0
303: ** Registration worker thread finished.
303: Warping...
303: plm_warp_itk: xform_to_itk_vf
303: plm_warp_itk: convert_to_itk
303: plm_warp_itk: warping...
303: Saving image...
303: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd-img.mha
303: Saving vf...
303: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd-vf.mha
303: Load:   0.0544262
303: Run:    0.341269
303: Save:   0.044899
303: Total:  0.440594
303: Finished!
303: 
303: STDERR: 
311: RETVAL: 0
311: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872
311: 
311: STDERR: 
303: Not an error
268/571 Test #303: plm-reg-itk-demons-logd ...............   Passed    0.76 sec
test 317
        Start 317: plm-bsp-mse-i-stats

317: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-i-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
317: Test timeout computed to be: 1500
311: Not an error
269/571 Test #311: plm-bsp-mse-g-stats ...................   Passed    0.30 sec
test 320
        Start 320: plm-bsp-mse-k-stats

320: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-k-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
320: Test timeout computed to be: 1500
317: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
317: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha
317: EXPECTED_ERRNO is 
320: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
320: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha
320: EXPECTED_ERRNO is 
314: RETVAL: 0
314: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872
314: 
314: STDERR: 
314: Not an error
305: RETVAL: 0
305: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
305: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
305: Launching registration worker thread
305: Inside registration worker thread
305: Doing registration stage
305: [1] xf_in->m_type = 0, xf_out->m_type = 0
305: Ready to start registration.
305: MSE [   0] 18945.891 [ 0.056 secs]
305: MSE [   1]  9778.825 [ 0.116 secs]
305: MSE [   2]  3980.165 [ 0.095 secs]
305: MSE [   3]  1233.515 [ 0.078 secs]
305: MSE [   4]   374.936 [ 0.093 secs]
305: Done with registration.  Writing output...
305: Deformation stats (out)
305: VF_MAX = 109.365   VF_AVG = 31.9237
305: [2] xf_out->m_type = 8, xf_in->m_type = 0
305: ** Registration worker thread finished.
305: Warping...
305: plm_warp_itk: xform_to_itk_vf
305: plm_warp_itk: convert_to_itk
305: plm_warp_itk: warping...
305: Saving image...
305: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd-img.mha
305: Saving vf...
305: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd-vf.mha
305: Load:   0.0561121
305: Run:    0.442117
305: Save:   0.079262
305: Total:  0.577491
305: Finished!
305: 
305: STDERR: 
270/571 Test #314: plm-bsp-mse-h-stats ...................   Passed    0.29 sec
test 323
        Start 323: plm-bsp-mse-l-stats

323: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-l-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
323: Test timeout computed to be: 1500
323: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
323: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha
323: EXPECTED_ERRNO is 
320: RETVAL: 0
320: STDOUT: MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872
320: 
320: STDERR: 
317: RETVAL: 0
317: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872
317: 
317: STDERR: 
305: Not an error
271/571 Test #305: plm-reg-itk-demons-sym-logd ...........   Passed    0.90 sec
test 325
        Start 325: plm-bsp-mse-o

325: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-o" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
325: Test timeout computed to be: 1500
325: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
325: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o.txt
325: EXPECTED_ERRNO is 
320: Not an error
317: Not an error
272/571 Test #320: plm-bsp-mse-k-stats ...................   Passed    0.33 sec
test 327
        Start 327: plm-bsp-mse-p

327: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-p" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
327: Test timeout computed to be: 1500
273/571 Test #317: plm-bsp-mse-i-stats ...................   Passed    0.35 sec
test 329
        Start 329: plm-bsp-mse-q

329: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-q" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
329: Test timeout computed to be: 1500
327: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
327: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p.txt
327: EXPECTED_ERRNO is 
329: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
329: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q.txt
329: EXPECTED_ERRNO is 
323: RETVAL: 0
323: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872
323: 
323: STDERR: 
323: Not an error
274/571 Test #323: plm-bsp-mse-l-stats ...................   Passed    0.31 sec
test 331
        Start 331: plm-bsp-mse-r

331: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-r" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
331: Test timeout computed to be: 1500
331: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
331: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r.txt
331: EXPECTED_ERRNO is 
325: RETVAL: 0
325: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
325: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
325: Launching registration worker thread
325: Inside registration worker thread
325: Doing registration stage
325: [1] xf_in->m_type = 0, xf_out->m_type = 0
325: RESAMPLE 1 1: (2 2 2), (2 2 2)
325: RESAMPLE 1 1: (2 2 2), (2 2 2)
325: volume_calc_grad complete.
325: bspline_xform_initialize
325: rdims = (2,2,2)
325: vox_per_rgn = (11,11,11)
325: cdims = (5 5 5)
325: Algorithm flavor = o
325: Threading = 0
325: >> Checking JH allocation
325: BSPLINE PARMS
325: max_its = 5
325: max_feval = 5
325: BSPLINE XFORM HEADER
325: vox_per_rgn = 11 11 11
325: roi_offset = 0 0 0
325: roi_dim = 19 19 19
325: img_dc = 1 0 0 0 1 0 0 0 1
325: BST METRICS
325: MET 110100 MSE 1.000000
325: Setting nmax, mmax = 375 21
325: >>> START     
325: This problem is unconstrained.
325: [ 0,  0] MSE    18756.248 NV   6859 GM -2992.626 GN       812 [     0.005 s ]
325:          CMIN   0.00 CAVG   0.00 CMAX   0.00
325:          LSD   0.00
325: [ 0,  1] MSE    17839.281 NV   6859 GM -3669.916 GN       971 [     0.005 s ]
325:          CMIN  -0.06 CAVG   0.01 CMAX   0.67
325:          LSD   1.00
325: [ 0,  2] MSE    14291.201 NV   6844 GM -3069.703 GN       827 [     0.005 s ]
325:          CMIN  -0.32 CAVG   0.05 CMAX   3.36
325:          LSD   5.00
325: [ 0,  3] MSE     3942.469 NV   6280 GM -1514.267 GN       474 [     0.004 s ]
325:          CMIN  -1.35 CAVG   0.21 CMAX  14.12
325:          LSD  21.00
325: [ 1,  4] MSE     6518.217 NV   5156 GM  1242.011 GN       628 [     0.004 s ]
325:          CMIN  -2.29 CAVG   0.47 CMAX  37.57
325:          LSD  35.84
325: [ 1,  5] MSE      347.073 NV   5829 GM  -219.984 GN      76.6 [     0.004 s ]
325:          CMIN  -1.44 CAVG   0.32 CMAX  24.31
325:          LSD  15.58
325: [2] xf_out->m_type = 9, xf_in->m_type = 0
325: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
325: bspline_xform_initialize
325: rdims = (2,2,2)
325: vox_per_rgn = (22,22,22)
325: cdims = (5 5 5)
325: ** Registration worker thread finished.
325: Writing transformation ...
325: Warping...
325: Running: plm_warp_native
325: Converting input image...
325: Converting xform...
325: bspline_xform_initialize
325: rdims = (2,2,2)
325: vox_per_rgn = (22,22,22)
325: cdims = (5 5 5)
325: Creating output vf...
325: Creating output volume...
325: Running native warper...
325: bspline_warp complete.
325: Back convert to original type...
325: > Convert vf to itk
325: > Conversion complete.
325: plm_warp_native is complete.
325: Saving image...
325: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha
325: Saving vf...
325: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-vf.mha
325: Load:   0.0387449
325: Run:    0.035605
325: Save:   0.127605
325: Total:  0.201955
325: Finished!
325: 
325: STDERR: 
329: RETVAL: 0
329: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
329: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
329: Launching registration worker thread
329: Inside registration worker thread
329: Doing registration stage
329: [1] xf_in->m_type = 0, xf_out->m_type = 0
329: RESAMPLE 1 1: (2 2 2), (2 2 2)
329: RESAMPLE 1 1: (2 2 2), (2 2 2)
329: volume_calc_grad complete.
329: bspline_xform_initialize
329: rdims = (2,2,2)
329: vox_per_rgn = (11,11,11)
329: cdims = (5 5 5)
329: Algorithm flavor = q
329: Threading = 0
329: >> Checking JH allocation
329: BSPLINE PARMS
329: max_its = 5
329: max_feval = 5
329: BSPLINE XFORM HEADER
329: vox_per_rgn = 11 11 11
329: roi_offset = 0 0 0
329: roi_dim = 19 19 19
329: img_dc = 1 0 0 0 1 0 0 0 1
329: BST METRICS
329: MET 110100 MSE 1.000000
329: Setting nmax, mmax = 375 21
329: >>> START     
329: This problem is unconstrained.
329: [ 0,  0] MSE    18756.236 NV   6859 GM -3516.347 GN       958 [     0.003 s ]
329:          CMIN   0.00 CAVG   0.00 CMAX   0.00
329:          LSD   0.00
329: [ 0,  1] MSE    17837.807 NV   6859 GM -3671.469 GN       971 [     0.003 s ]
329:          CMIN  -0.05 CAVG   0.01 CMAX   0.68
329:          LSD   1.00
329: [ 0,  2] MSE    14356.300 NV   6850 GM -3106.959 GN       834 [     0.003 s ]
329:          CMIN  -0.27 CAVG   0.05 CMAX   3.40
329:          LSD   5.00
329: [ 1,  3] MSE      822.836 NV   5638 GM   866.827 GN       180 [     0.003 s ]
329:          CMIN  -2.31 CAVG   0.43 CMAX  26.12
329:          LSD  35.51
329: [ 2,  4] MSE      332.350 NV   5821 GM  -189.482 GN      52.6 [     0.003 s ]
329:          CMIN  -2.36 CAVG   0.35 CMAX  22.13
329:          LSD   6.00
329: [ 3,  5] MSE      268.170 NV   5826 GM   -99.417 GN      39.3 [     0.003 s ]
329:          CMIN  -2.20 CAVG   0.36 CMAX  21.85
329:          LSD   1.43
329: [2] xf_out->m_type = 9, xf_in->m_type = 0
329: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
329: bspline_xform_initialize
329: rdims = (2,2,2)
329: vox_per_rgn = (22,22,22)
329: cdims = (5 5 5)
329: ** Registration worker thread finished.
329: Writing transformation ...
329: Warping...
329: Running: plm_warp_native
329: Converting input image...
329: Converting xform...
329: bspline_xform_initialize
329: rdims = (2,2,2)
329: vox_per_rgn = (22,22,22)
329: cdims = (5 5 5)
329: Creating output vf...
329: Creating output volume...
329: Running native warper...
329: bspline_warp complete.
329: Back convert to original type...
329: > Convert vf to itk
329: > Conversion complete.
329: plm_warp_native is complete.
329: Saving image...
329: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-img.mha
329: Saving vf...
329: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-vf.mha
329: Load:   0.0507212
329: Run:    0.028791
329: Save:   0.103383
329: Total:  0.182895
329: Finished!
329: 
329: STDERR: 
325: Not an error
275/571 Test #325: plm-bsp-mse-o .........................   Passed    0.56 sec
test 334
        Start 334: plm-bsp-mi-c-stats

334: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
334: Test timeout computed to be: 1500
329: Not an error
276/571 Test #329: plm-bsp-mse-q .........................   Passed    0.50 sec
test 337
        Start 337: plm-bsp-mi-c-2-stats

337: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-2-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
337: Test timeout computed to be: 1500
334: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
334: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha
334: EXPECTED_ERRNO is 
337: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
337: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha
337: EXPECTED_ERRNO is 
327: RETVAL: 0
327: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
327: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
327: Launching registration worker thread
327: Inside registration worker thread
327: Doing registration stage
327: [1] xf_in->m_type = 0, xf_out->m_type = 0
327: RESAMPLE 1 1: (2 2 2), (2 2 2)
327: RESAMPLE 1 1: (2 2 2), (2 2 2)
327: volume_calc_grad complete.
327: bspline_xform_initialize
327: rdims = (2,2,2)
327: vox_per_rgn = (11,11,11)
327: cdims = (5 5 5)
327: Algorithm flavor = p
327: Threading = 0
327: >> Checking JH allocation
327: BSPLINE PARMS
327: max_its = 5
327: max_feval = 5
327: BSPLINE XFORM HEADER
327: vox_per_rgn = 11 11 11
327: roi_offset = 0 0 0
327: roi_dim = 19 19 19
327: img_dc = 1 0 0 0 1 0 0 0 1
327: BST METRICS
327: MET 110100 MSE 1.000000
327: Setting nmax, mmax = 375 21
327: >>> START     
327: This problem is unconstrained.
327: [ 0,  0] MSE    18756.236 NV   6859 GM -3516.347 GN       958 [     0.028 s ]
327:          CMIN   0.00 CAVG   0.00 CMAX   0.00
327:          LSD   0.00
327: [ 0,  1] MSE    17837.807 NV   6859 GM -3671.469 GN       971 [     0.015 s ]
327:          CMIN  -0.05 CAVG   0.01 CMAX   0.68
327:          LSD   1.00
327: [ 0,  2] MSE    14356.300 NV   6850 GM -3106.959 GN       834 [     0.025 s ]
327:          CMIN  -0.27 CAVG   0.05 CMAX   3.40
327:          LSD   5.00
327: [ 1,  3] MSE      822.836 NV   5638 GM   866.827 GN       180 [     0.009 s ]
327:          CMIN  -2.31 CAVG   0.43 CMAX  26.12
327:          LSD  35.51
327: [ 2,  4] MSE      332.350 NV   5821 GM  -189.482 GN      52.6 [     0.009 s ]
327:          CMIN  -2.36 CAVG   0.35 CMAX  22.13
327:          LSD   6.00
327: [ 3,  5] MSE      268.170 NV   5826 GM   -99.417 GN      39.3 [     0.010 s ]
327:          CMIN  -2.20 CAVG   0.36 CMAX  21.85
327:          LSD   1.43
327: [2] xf_out->m_type = 9, xf_in->m_type = 0
327: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
327: bspline_xform_initialize
327: rdims = (2,2,2)
327: vox_per_rgn = (22,22,22)
327: cdims = (5 5 5)
327: ** Registration worker thread finished.
327: Writing transformation ...
327: Warping...
327: Running: plm_warp_native
327: Converting input image...
327: Converting xform...
327: bspline_xform_initialize
327: rdims = (2,2,2)
327: vox_per_rgn = (22,22,22)
327: cdims = (5 5 5)
327: Creating output vf...
327: Creating output volume...
327: Running native warper...
327: bspline_warp complete.
327: Back convert to original type...
327: > Convert vf to itk
327: > Conversion complete.
327: plm_warp_native is complete.
327: Saving image...
327: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-img.mha
327: Saving vf...
327: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-vf.mha
327: Load:   0.059273
327: Run:    0.128094
327: Save:   0.102509
327: Total:  0.289876
327: Finished!
327: 
327: STDERR: 
327: Not an error
277/571 Test #327: plm-bsp-mse-p .........................   Passed    0.67 sec
test 340
        Start 340: plm-bsp-mi-k-stats

340: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-k-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
340: Test timeout computed to be: 1500
340: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
340: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha
340: EXPECTED_ERRNO is 
331: RETVAL: 0
331: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
331: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
331: Launching registration worker thread
331: Inside registration worker thread
331: Doing registration stage
331: [1] xf_in->m_type = 0, xf_out->m_type = 0
331: RESAMPLE 1 1: (2 2 2), (2 2 2)
331: RESAMPLE 1 1: (2 2 2), (2 2 2)
331: volume_calc_grad complete.
331: bspline_xform_initialize
331: rdims = (2,2,2)
331: vox_per_rgn = (11,11,11)
331: cdims = (5 5 5)
331: Algorithm flavor = r
331: Threading = 0
331: >> Checking JH allocation
331: BSPLINE PARMS
331: max_its = 5
331: max_feval = 5
331: BSPLINE XFORM HEADER
331: vox_per_rgn = 11 11 11
331: roi_offset = 0 0 0
331: roi_dim = 19 19 19
331: img_dc = 1 0 0 0 1 0 0 0 1
331: BST METRICS
331: MET 110100 MSE 1.000000
331: Setting nmax, mmax = 375 21
331: >>> START     
331: This problem is unconstrained.
331: [ 0,  0] MSE    18756.236 NV   6859 GM -3516.347 GN       958 [     0.018 s ]
331:          CMIN   0.00 CAVG   0.00 CMAX   0.00
331:          LSD   0.00
331: [ 0,  1] MSE    17837.807 NV   6859 GM -3671.469 GN       971 [     0.026 s ]
331:          CMIN  -0.05 CAVG   0.01 CMAX   0.68
331:          LSD   1.00
331: [ 0,  2] MSE    14356.300 NV   6850 GM -3106.959 GN       834 [     0.009 s ]
331:          CMIN  -0.27 CAVG   0.05 CMAX   3.40
331:          LSD   5.00
331: [ 1,  3] MSE      822.836 NV   5638 GM   866.827 GN       180 [     0.008 s ]
331:          CMIN  -2.31 CAVG   0.43 CMAX  26.12
331:          LSD  35.51
331: [ 2,  4] MSE      332.350 NV   5821 GM  -189.482 GN      52.6 [     0.008 s ]
331:          CMIN  -2.36 CAVG   0.35 CMAX  22.13
331:          LSD   6.00
331: [ 3,  5] MSE      268.170 NV   5826 GM   -99.417 GN      39.3 [     0.009 s ]
331:          CMIN  -2.20 CAVG   0.36 CMAX  21.85
331:          LSD   1.43
331: [2] xf_out->m_type = 9, xf_in->m_type = 0
331: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
331: bspline_xform_initialize
331: rdims = (2,2,2)
331: vox_per_rgn = (22,22,22)
331: cdims = (5 5 5)
331: ** Registration worker thread finished.
331: Writing transformation ...
331: Warping...
331: Running: plm_warp_native
331: Converting input image...
331: Converting xform...
331: bspline_xform_initialize
331: rdims = (2,2,2)
331: vox_per_rgn = (22,22,22)
331: cdims = (5 5 5)
331: Creating output vf...
331: Creating output volume...
331: Running native warper...
331: bspline_warp complete.
331: Back convert to original type...
331: > Convert vf to itk
331: > Conversion complete.
331: plm_warp_native is complete.
331: Saving image...
331: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-img.mha
331: Saving vf...
331: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-vf.mha
331: Load:   0.0603271
331: Run:    0.091115
331: Save:   0.0735068
331: Total:  0.224949
331: Finished!
331: 
331: STDERR: 
331: Not an error
334: RETVAL: 0
334: STDOUT: MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872
334: 
334: STDERR: 
278/571 Test #331: plm-bsp-mse-r .........................   Passed    0.62 sec
test 343
        Start 343: plm-bsp-gm-k-stats

343: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-gm-k-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
343: Test timeout computed to be: 1500
337: RETVAL: 0
337: STDOUT: MIN -991.894104 AVE -128.919357 MAX 0.000000 NONZERO 48385 NUMVOX 54872
337: 
337: STDERR: 
343: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
343: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha
343: EXPECTED_ERRNO is 
334: Not an error
279/571 Test #334: plm-bsp-mi-c-stats ....................   Passed    0.38 sec
test 345
        Start 345: plm-bsp-sm-multi-a

345: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-sm-multi-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
345: Test timeout computed to be: 1500
337: Not an error
280/571 Test #337: plm-bsp-mi-c-2-stats ..................   Passed    0.38 sec
test 348
        Start 348: plm-bsp-openmp-stats

348: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-openmp-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
348: Test timeout computed to be: 1500
345: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
345: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a.txt
345: EXPECTED_ERRNO is 
348: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
348: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-img.mha
348: EXPECTED_ERRNO is 
340: RETVAL: 0
340: STDOUT: MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872
340: 
340: STDERR: 
340: Not an error
281/571 Test #340: plm-bsp-mi-k-stats ....................   Passed    0.33 sec
test 350
        Start 350: plm-bsp-resume

350: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-resume" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
350: Test timeout computed to be: 1500
343: RETVAL: 0
343: STDOUT: MIN -997.631409 AVE -121.961853 MAX 0.000000 NONZERO 49452 NUMVOX 54872
343: 
343: STDERR: 
350: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
350: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume.txt
350: EXPECTED_ERRNO is 
343: Not an error
282/571 Test #343: plm-bsp-gm-k-stats ....................   Passed    0.29 sec
test 352
        Start 352: plm-bsp-logfile

352: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-logfile" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
352: Test timeout computed to be: 1500
352: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
352: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile.txt
352: EXPECTED_ERRNO is 
348: RETVAL: 0
348: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872
348: 
348: STDERR: 
348: Not an error
283/571 Test #348: plm-bsp-openmp-stats ..................   Passed    0.38 sec
test 355
        Start 355: plm-bsp-ushort-stats

355: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-ushort-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
355: Test timeout computed to be: 1500
355: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
355: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-img.mha
355: EXPECTED_ERRNO is 
345: RETVAL: 0
345: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
345: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
345: Loading fixed image [1]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
345: Loading moving image [1]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
345: Launching registration worker thread
345: Inside registration worker thread
345: Doing registration stage
345: [1] xf_in->m_type = 0, xf_out->m_type = 0
345: RESAMPLE 1 1: (2 2 2), (2 2 2)
345: RESAMPLE 1 1: (2 2 2), (2 2 2)
345: volume_calc_grad_mag complete.
345: volume_calc_grad_mag complete.
345: volume_calc_grad complete.
345: RESAMPLE 1 1: (2 2 2), (2 2 2)
345: RESAMPLE 1 1: (2 2 2), (2 2 2)
345: volume_calc_grad complete.
345: bspline_xform_initialize
345: rdims = (2,2,2)
345: vox_per_rgn = (11,11,11)
345: cdims = (5 5 5)
345: Algorithm flavor = c
345: Threading = 0
345: >> Checking JH allocation
345: >> Performing JH allocation
345: BSPLINE PARMS
345: max_its = 5
345: max_feval = 5
345: BSPLINE XFORM HEADER
345: vox_per_rgn = 11 11 11
345: roi_offset = 0 0 0
345: roi_dim = 19 19 19
345: img_dc = 1 0 0 0 1 0 0 0 1
345: BST METRICS
345: MET 110100 GM 0.100000
345: MET 110100 MI 100.000000
345: >> Performing JH initialization
345: Setting nmax, mmax = 375 21
345: >>> START     
345: This problem is unconstrained.
345: [ 0,  0] SCORE    -23.086 NV   6859 GM    11.933 GN       2.8 [     0.018 s ]
345:          GM       172.276 MI     -0.4031359          CMIN   0.01 CAVG   0.01 CMAX   0.01
345:          LSD   0.00
345: [ 0,  1] SCORE    -21.366 NV   6859 GM   -20.848 GN      4.05 [     0.018 s ]
345:          GM       172.158 MI     -0.3858200          CMIN  -0.49 CAVG  -0.00 CMAX   0.08
345:          LSD   1.00
345: [ 0,  2] SCORE    -22.915 NV   6859 GM   -12.881 GN      2.54 [     0.018 s ]
345:          GM       172.298 MI     -0.4014443          CMIN  -0.08 CAVG   0.01 CMAX   0.02
345:          LSD   0.18
345: [ 0,  3] SCORE    -23.222 NV   6859 GM    -1.121 GN      1.07 [     0.018 s ]
345:          GM       172.313 MI     -0.4045370          CMIN  -0.01 CAVG   0.01 CMAX   0.01
345:          LSD   0.05
345: [ 1,  4] SCORE    -23.229 NV   6859 GM    16.621 GN      3.63 [     0.018 s ]
345:          GM       172.348 MI     -0.4046354          CMIN  -0.01 CAVG   0.01 CMAX   0.01
345:          LSD   0.01
345: [ 2,  5] SCORE    -22.889 NV   6859 GM   -16.998 GN      4.96 [     0.018 s ]
345:          GM       172.750 MI     -0.4016393          CMIN  -0.14 CAVG   0.01 CMAX   0.04
345:          LSD   0.20
345: [2] xf_out->m_type = 9, xf_in->m_type = 0
345: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
345: bspline_xform_initialize
345: rdims = (2,2,2)
345: vox_per_rgn = (22,22,22)
345: cdims = (5 5 5)
345: ** Registration worker thread finished.
345: Writing transformation ...
345: Warping...
345: Running: plm_warp_native
345: Converting input image...
345: Converting xform...
345: bspline_xform_initialize
345: rdims = (2,2,2)
345: vox_per_rgn = (22,22,22)
345: cdims = (5 5 5)
345: Creating output vf...
345: Creating output volume...
345: Running native warper...
345: bspline_warp complete.
345: Back convert to original type...
345: > Convert vf to itk
345: > Conversion complete.
345: plm_warp_native is complete.
345: Saving image...
345: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-img.mha
345: Saving vf...
345: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-vf.mha
345: Load:   0.0508459
345: Run:    0.124663
345: Save:   0.0584049
345: Total:  0.233914
345: Finished!
345: 
345: STDERR: 
345: Not an error
284/571 Test #345: plm-bsp-sm-multi-a ....................   Passed    0.56 sec
test 358
        Start 358: plm-bsp-double-stats

358: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-double-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
358: Test timeout computed to be: 1500
358: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
358: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha
358: EXPECTED_ERRNO is 
352: RETVAL: 0
352: STDOUT: Plastimatch 1.9.3
352: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
352: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
352: Launching registration worker thread
352: Inside registration worker thread
352: Doing registration stage
352: [1] xf_in->m_type = 0, xf_out->m_type = 0
352: RESAMPLE 1 1: (2 2 2), (2 2 2)
352: RESAMPLE 1 1: (2 2 2), (2 2 2)
352: volume_calc_grad complete.
352: bspline_xform_initialize
352: rdims = (2,2,2)
352: vox_per_rgn = (11,11,11)
352: cdims = (5 5 5)
352: Algorithm flavor = g
352: Threading = 0
352: >> Checking JH allocation
352: BSPLINE PARMS
352: max_its = 5
352: max_feval = 5
352: BSPLINE XFORM HEADER
352: vox_per_rgn = 11 11 11
352: roi_offset = 0 0 0
352: roi_dim = 19 19 19
352: img_dc = 1 0 0 0 1 0 0 0 1
352: BST METRICS
352: MET 110100 MSE 1.000000
352: Setting nmax, mmax = 375 21
352: >>> START     
352: This problem is unconstrained.
352: [ 0,  0] MSE    18756.236 NV   6859 GM -2980.067 GN       852 [     0.014 s ]
352:          CMIN   0.00 CAVG   0.00 CMAX   0.00
352:          LSD   0.00
352: [ 0,  1] MSE    17838.633 NV   6859 GM -2882.393 GN       824 [     0.009 s ]
352:          CMIN  -0.07 CAVG   0.01 CMAX   0.68
352:          LSD   1.00
352: [ 0,  2] MSE    14464.859 NV   6858 GM -2822.149 GN       824 [     0.025 s ]
352:          CMIN  -0.35 CAVG   0.05 CMAX   3.40
352:          LSD   5.00
352: [ 0,  3] MSE     3829.066 NV   6286 GM -1585.570 GN       459 [     0.010 s ]
352:          CMIN  -1.48 CAVG   0.20 CMAX  14.26
352:          LSD  21.00
352: [ 1,  4] MSE     3098.538 NV   5455 GM  1176.092 GN       399 [     0.009 s ]
352:          CMIN  -1.74 CAVG   0.44 CMAX  32.50
352:          LSD  27.95
352: [ 2,  5] MSE      282.038 NV   5851 GM    54.495 GN      43.4 [     0.009 s ]
352:          CMIN  -1.73 CAVG   0.34 CMAX  23.99
352:          LSD  13.11
352: [2] xf_out->m_type = 9, xf_in->m_type = 0
352: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
352: bspline_xform_initialize
352: rdims = (2,2,2)
352: vox_per_rgn = (22,22,22)
352: cdims = (5 5 5)
352: ** Registration worker thread finished.
352: Writing transformation ...
352: Warping...
352: Running: plm_warp_native
352: Converting input image...
352: Converting xform...
352: bspline_xform_initialize
352: rdims = (2,2,2)
352: vox_per_rgn = (22,22,22)
352: cdims = (5 5 5)
352: Creating output vf...
352: Creating output volume...
352: Running native warper...
352: bspline_warp complete.
352: Back convert to original type...
352: > Convert vf to itk
352: > Conversion complete.
352: plm_warp_native is complete.
352: Saving image...
352: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-img.nrrd
352: Saving vf...
352: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-vf.nrrd
352: Plastimatch 1.9.3
352: Load:   0.0569601
352: Run:    0.0885751
352: Save:   0.0969501
352: Total:  0.242485
352: Finished!
352: 
352: STDERR: 
350: RETVAL: 0
350: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha
350: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha
350: Launching registration worker thread
350: Inside registration worker thread
350: Doing registration stage
350: [1] xf_in->m_type = 0, xf_out->m_type = 0
350: RESAMPLE 1 1: (2 2 2), (2 2 2)
350: RESAMPLE 1 1: (2 2 2), (2 2 2)
350: volume_calc_grad complete.
350: bspline_xform_initialize
350: rdims = (2,2,2)
350: vox_per_rgn = (11,11,11)
350: cdims = (5 5 5)
350: Algorithm flavor = c
350: Threading = 0
350: >> Checking JH allocation
350: BSPLINE PARMS
350: max_its = 5
350: max_feval = 5
350: BSPLINE XFORM HEADER
350: vox_per_rgn = 11 11 11
350: roi_offset = 0 0 0
350: roi_dim = 19 19 19
350: img_dc = 1 0 0 0 1 0 0 0 1
350: BST METRICS
350: MET 110100 MSE 1.000000
350: Setting nmax, mmax = 375 21
350: >>> START     
350: This problem is unconstrained.
350: [ 0,  0] MSE    18756.248 NV   6859 GM -2980.062 GN       852 [     0.005 s ]
350:          CMIN   0.00 CAVG   0.00 CMAX   0.00
350:          LSD   0.00
350: [ 0,  1] MSE    17838.643 NV   6859 GM -2882.390 GN       824 [     0.005 s ]
350:          CMIN  -0.07 CAVG   0.01 CMAX   0.68
350:          LSD   1.00
350: [ 0,  2] MSE    14464.868 NV   6858 GM -2822.145 GN       824 [     0.005 s ]
350:          CMIN  -0.35 CAVG   0.05 CMAX   3.40
350:          LSD   5.00
350: [ 0,  3] MSE     3829.069 NV   6286 GM -1585.570 GN       459 [     0.005 s ]
350:          CMIN  -1.48 CAVG   0.20 CMAX  14.26
350:          LSD  21.00
350: [ 1,  4] MSE     3098.610 NV   5455 GM  1176.112 GN       399 [     0.005 s ]
350:          CMIN  -1.74 CAVG   0.44 CMAX  32.50
350:          LSD  27.95
350: [ 2,  5] MSE      282.038 NV   5851 GM    54.493 GN      43.4 [     0.005 s ]
350:          CMIN  -1.73 CAVG   0.34 CMAX  23.99
350:          LSD  13.11
350: [2] xf_out->m_type = 9, xf_in->m_type = 0
350: Doing registration stage
350: [1] xf_in->m_type = 9, xf_out->m_type = 0
350: RESAMPLE 1 1: (2 2 2), (2 2 2)
350: RESAMPLE 1 1: (2 2 2), (2 2 2)
350: volume_calc_grad complete.
350: bspline_xform_initialize
350: rdims = (2,2,2)
350: vox_per_rgn = (11,11,11)
350: cdims = (5 5 5)
350: Algorithm flavor = c
350: Threading = 0
350: >> Checking JH allocation
350: BSPLINE PARMS
350: max_its = 5
350: max_feval = 5
350: BSPLINE XFORM HEADER
350: vox_per_rgn = 11 11 11
350: roi_offset = 0 0 0
350: roi_dim = 19 19 19
350: img_dc = 1 0 0 0 1 0 0 0 1
350: BST METRICS
350: MET 110100 MSE 1.000000
350: Setting nmax, mmax = 375 21
350: >>> START     
350: This problem is unconstrained.
350: [ 0,  0] MSE      282.038 NV   5851 GM    54.493 GN      43.4 [     0.005 s ]
350:          CMIN  -1.73 CAVG   0.34 CMAX  23.99
350:          LSD   0.00
350: [ 0,  1] MSE      245.572 NV   5873 GM   -24.090 GN      31.6 [     0.005 s ]
350:          CMIN  -1.74 CAVG   0.33 CMAX  23.36
350:          LSD   1.00
350: [ 1,  2] MSE      184.553 NV   5937 GM   -53.657 GN      19.1 [     0.005 s ]
350:          CMIN  -1.91 CAVG   0.35 CMAX  21.57
350:          LSD   3.72
350: [ 2,  3] MSE      169.679 NV   5953 GM   -95.518 GN      19.6 [     0.005 s ]
350:          CMIN  -2.31 CAVG   0.35 CMAX  20.63
350:          LSD   2.11
350: [ 3,  4] MSE      160.980 NV   5975 GM   -14.478 GN      20.7 [     0.005 s ]
350:          CMIN  -3.42 CAVG   0.39 CMAX  17.80
350:          LSD   5.62
350: [ 4,  5] MSE      133.675 NV   5940 GM    -9.965 GN      18.9 [     0.005 s ]
350:          CMIN  -3.93 CAVG   0.41 CMAX  17.38
350:          LSD   2.38
350: [2] xf_out->m_type = 9, xf_in->m_type = 9
350: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
350: bspline_xform_initialize
350: rdims = (2,2,2)
350: vox_per_rgn = (22,22,22)
350: cdims = (5 5 5)
350: Writing transformation ...
350: Warping...
350: Running: plm_warp_native
350: Converting input image...
350: Converting xform...
350: bspline_xform_initialize
350: rdims = (2,2,2)
350: vox_per_rgn = (22,22,22)
350: cdims = (5 5 5)
350: ** Registration worker thread finished.
350: Creating output vf...
350: Creating output volume...
350: Running native warper...
350: bspline_warp complete.
350: Back convert to original type...
350: > Convert vf to itk
350: > Conversion complete.
350: plm_warp_native is complete.
350: Saving image...
350: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha
350: Saving vf...
350: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-vf.mha
350: Load:   0.0736952
350: Run:    0.109842
350: Save:   0.0577559
350: Total:  0.241293
350: Finished!
350: 
350: STDERR: 
355: RETVAL: 0
355: STDOUT: MIN 0.000000 AVE 107.313034 MAX 997.000000 NONZERO 44294 NUMVOX 54872
355: 
355: STDERR: 
350: Not an error
285/571 Test #350: plm-bsp-resume ........................   Passed    0.60 sec
test 362
        Start 362: plm-bsp-char-output-stats

362: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-char-output-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
362: Test timeout computed to be: 1500
352: Not an error
286/571 Test #352: plm-bsp-logfile .......................   Passed    0.54 sec
test 364
        Start 364: plm-bsp-rect

364: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-rect" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
364: Test timeout computed to be: 1500
362: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
362: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output.mha
362: EXPECTED_ERRNO is 
364: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
364: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect.txt
364: EXPECTED_ERRNO is 
355: Not an error
287/571 Test #355: plm-bsp-ushort-stats ..................   Passed    0.41 sec
test 366
        Start 366: plm-bsp-regularize-none-stats

366: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-none-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
366: Test timeout computed to be: 1500
366: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
366: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha
366: EXPECTED_ERRNO is 
358: RETVAL: 0
358: STDOUT: MIN 0.000000 AVE 108.147682 MAX 998.045227 NONZERO 46833 NUMVOX 54872
358: 
358: STDERR: 
358: Not an error
288/571 Test #358: plm-bsp-double-stats ..................   Passed    0.42 sec
test 369
        Start 369: plm-bsp-regularize-analytic-stats

369: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-analytic-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
369: Test timeout computed to be: 1500
369: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
369: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha
369: EXPECTED_ERRNO is 
366: RETVAL: 0
366: STDOUT: Min:                 -9.485     -9.485     -9.485
366: Mean:                -0.004     -0.004     -0.004
366: Max:                  9.819      9.819      9.819
366: Mean abs:             0.215      0.215      0.215
366: Ave len:              0.425
366: Jacobian:        MINJAC  0.315393 MAXJAC  1.06557
366: Energy:        MINDIL        -0.958 MAXDIL    0.0701264
366:                MAXSTRAIN     0.0879 TOTSTRAIN 112.949
366: Second derivatives: MINSECDER          0 MAXSECDER     0.0362
366:                     AVESECDER   0.000354 INTSECDER   4.42e+04
366: Max second derivative at: (20 20 16)
366: 
366: STDERR: 
362: RETVAL: 0
362: STDOUT: MIN -128.000000 AVE -127.132690 MAX 0.000000 NONZERO 54608 NUMVOX 54872
362: 
362: STDERR: 
366: Not an error
289/571 Test #366: plm-bsp-regularize-none-stats .........   Passed    0.27 sec
test 372
        Start 372: plm-bsp-regularize-numeric-stats

372: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-numeric-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
372: Test timeout computed to be: 1500
372: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
372: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha
372: EXPECTED_ERRNO is 
362: Not an error
290/571 Test #362: plm-bsp-char-output-stats .............   Passed    0.40 sec
test 376
        Start 376: plm-bsp-landmark-b-stats

376: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
376: Test timeout computed to be: 1500
376: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
376: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha
376: EXPECTED_ERRNO is 
364: RETVAL: 0
364: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha
364: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha
364: Launching registration worker thread
364: Inside registration worker thread
364: Doing registration stage
364: [1] xf_in->m_type = 0, xf_out->m_type = 0
364: RESAMPLE 1 1: (2 2 2), (2 2 2)
364: RESAMPLE 1 1: (2 2 2), (2 2 2)
364: volume_calc_grad complete.
364: bspline_xform_initialize
364: Warning: vox_per_rgn was less than 4.
364: Warning: vox_per_rgn was less than 4.
364: Warning: vox_per_rgn was less than 4.
364: rdims = (5,5,5)
364: vox_per_rgn = (4,4,4)
364: cdims = (8 8 8)
364: Algorithm flavor = g
364: Threading = 0
364: >> Checking JH allocation
364: BSPLINE PARMS
364: max_its = 5
364: max_feval = 5
364: BSPLINE XFORM HEADER
364: vox_per_rgn = 4 4 4
364: roi_offset = 0 0 0
364: roi_dim = 19 19 19
364: img_dc = 1 0 0 0 1 0 0 0 1
364: BST METRICS
364: MET 110100 MSE 1.000000
364: Setting nmax, mmax = 1536 41
364: >>> START     
364: This problem is unconstrained.
364: [ 0,  0] MSE     1339.481 NV   6859 GM    84.834 GN      23.1 [     0.012 s ]
364:          CMIN   0.00 CAVG   0.00 CMAX   0.00
364:          LSD   0.00
364: [ 0,  1] MSE     1311.345 NV   6859 GM    83.820 GN      22.8 [     0.009 s ]
364:          CMIN  -0.60 CAVG  -0.00 CMAX   0.08
364:          LSD   1.00
364: [ 0,  2] MSE     1202.580 NV   6859 GM    79.773 GN      21.8 [     0.009 s ]
364:          CMIN  -2.99 CAVG  -0.01 CMAX   0.42
364:          LSD   5.00
364: [ 0,  3] MSE      827.300 NV   6859 GM    63.686 GN      17.5 [     0.005 s ]
364:          CMIN -12.56 CAVG  -0.05 CMAX   1.74
364:          LSD  21.00
364: [ 1,  4] MSE      213.043 NV   6859 GM   -16.873 GN      5.84 [     0.008 s ]
364:          CMIN -54.37 CAVG  -0.20 CMAX   6.52
364:          LSD  67.10
364: [ 2,  5] MSE      175.936 NV   6859 GM    -0.450 GN      2.34 [     0.006 s ]
364:          CMIN -51.91 CAVG  -0.18 CMAX   5.91
364:          LSD  13.48
364: [2] xf_out->m_type = 9, xf_in->m_type = 0
364: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
364: bspline_xform_initialize
364: rdims = (5,5,5)
364: vox_per_rgn = (8,8,8)
364: cdims = (8 8 8)
364: ** Registration worker thread finished.
364: Writing transformation ...
364: Warping...
364: Running: plm_warp_native
364: Converting input image...
364: Converting xform...
364: bspline_xform_initialize
364: rdims = (5,5,5)
364: vox_per_rgn = (8,8,8)
364: cdims = (8 8 8)
364: Creating output vf...
364: Creating output volume...
364: Running native warper...
364: bspline_warp complete.
364: Back convert to original type...
364: > Convert vf to itk
364: > Conversion complete.
364: plm_warp_native is complete.
364: Saving image...
364: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-img.mha
364: Saving vf...
364: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd
364: Load:   0.0570381
364: Run:    0.0704591
364: Save:   0.0950019
364: Total:  0.222499
364: Finished!
364: 
364: STDERR: 
369: RETVAL: 0
369: STDOUT: Min:                 -7.802     -7.802     -7.802
369: Mean:                -0.007     -0.007     -0.007
369: Max:                  7.755      7.755      7.755
369: Mean abs:             0.234      0.234      0.234
369: Ave len:              0.474
369: Jacobian:        MINJAC  0.419027 MAXJAC  1.04996
369: Energy:        MINDIL        -0.755 MAXDIL    0.0517541
369:                MAXSTRAIN     0.0532 TOTSTRAIN 83.3434
369: Second derivatives: MINSECDER    2.4e-12 MAXSECDER     0.0192
369:                     AVESECDER   0.000198 INTSECDER   2.47e+04
369: Max second derivative at: (20 16 20)
369: 
369: STDERR: 
364: Not an error
291/571 Test #364: plm-bsp-rect ..........................   Passed    0.58 sec
test 379
        Start 379: plm-bsp-landmark-c-stats

379: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
379: Test timeout computed to be: 1500
379: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
379: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha
379: EXPECTED_ERRNO is 
369: Not an error
372: RETVAL: 0
372: STDOUT: Min:                 -7.243     -7.243     -7.243
372: Mean:                -0.004     -0.004     -0.004
372: Max:                  7.465      7.465      7.465
372: Mean abs:             0.231      0.231      0.231
372: Ave len:              0.460
372: Jacobian:        MINJAC  0.443734 MAXJAC  1.03502
372: Energy:        MINDIL        -0.712 MAXDIL    0.0370853
372:                MAXSTRAIN     0.0397 TOTSTRAIN 73.6175
372: Second derivatives: MINSECDER   9.85e-12 MAXSECDER     0.0182
372:                     AVESECDER    0.00018 INTSECDER   2.24e+04
372: Max second derivative at: (20 20 16)
372: 
372: STDERR: 
292/571 Test #369: plm-bsp-regularize-analytic-stats .....   Passed    0.36 sec
test 382
        Start 382: plm-bsp-landmark-d-stats

382: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
382: Test timeout computed to be: 1500
382: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
382: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha
382: EXPECTED_ERRNO is 
376: RETVAL: 0
376: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872
376: 
376: STDERR: 
372: Not an error
293/571 Test #372: plm-bsp-regularize-numeric-stats ......   Passed    0.34 sec
test 385
        Start 385: plm-bsp-landmark-e-stats

385: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-e-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
385: Test timeout computed to be: 1500
385: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
385: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha
385: EXPECTED_ERRNO is 
376: Not an error
294/571 Test #376: plm-bsp-landmark-b-stats ..............   Passed    0.38 sec
test 388
        Start 388: plm-bsp-dcos-a-stats

388: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
388: Test timeout computed to be: 1500
388: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
388: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd
388: EXPECTED_ERRNO is 
379: RETVAL: 0
379: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872
379: 
379: STDERR: 
382: RETVAL: 0
382: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872
382: 
382: STDERR: 
379: Not an error
382: Not an error
295/571 Test #379: plm-bsp-landmark-c-stats ..............   Passed    0.40 sec
test 391
        Start 391: plm-bsp-dcos-b-stats

391: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
391: Test timeout computed to be: 1500
296/571 Test #382: plm-bsp-landmark-d-stats ..............   Passed    0.38 sec
test 394
        Start 394: plm-bsp-dcos-c-stats

394: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
394: Test timeout computed to be: 1500
385: RETVAL: 0
385: STDOUT: MIN -1000.000183 AVE -991.396057 MAX 0.000000 NONZERO 54488 NUMVOX 54872
385: 
385: STDERR: 
391: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
391: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd
391: EXPECTED_ERRNO is 
394: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
394: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd
394: EXPECTED_ERRNO is 
388: RETVAL: 0
388: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872
388: 
388: STDERR: 
385: Not an error
297/571 Test #385: plm-bsp-landmark-e-stats ..............   Passed    0.42 sec
test 397
        Start 397: plm-bsp-dcos-d-stats

397: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
397: Test timeout computed to be: 1500
397: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
397: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd
397: EXPECTED_ERRNO is 
388: Not an error
298/571 Test #388: plm-bsp-dcos-a-stats ..................   Passed    0.37 sec
test 400
        Start 400: plm-bsp-dcos-e-stats

400: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-e-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
400: Test timeout computed to be: 1500
400: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
400: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd
400: EXPECTED_ERRNO is 
391: RETVAL: 0
391: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872
391: 
391: STDERR: 
394: RETVAL: 0
394: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872
394: 
394: STDERR: 
391: Not an error
394: Not an error
299/571 Test #391: plm-bsp-dcos-b-stats ..................   Passed    0.38 sec
test 403
        Start 403: plm-bsp-dcos-f-stats

403: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-f-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
403: Test timeout computed to be: 1500
300/571 Test #394: plm-bsp-dcos-c-stats ..................   Passed    0.38 sec
test 406
        Start 406: plm-reg-multi-a-stats

406: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
406: Test timeout computed to be: 1500
403: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
403: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd
403: EXPECTED_ERRNO is 
406: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
406: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd
406: EXPECTED_ERRNO is 
397: RETVAL: 0
397: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872
397: 
397: STDERR: 
400: RETVAL: 0
400: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872
400: 
400: STDERR: 
397: Not an error
301/571 Test #397: plm-bsp-dcos-d-stats ..................   Passed    0.38 sec
test 409
        Start 409: plm-reg-multi-b-stats

409: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
409: Test timeout computed to be: 1500
409: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
409: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd
409: EXPECTED_ERRNO is 
400: Not an error
302/571 Test #400: plm-bsp-dcos-e-stats ..................   Passed    0.40 sec
test 412
        Start 412: plm-reg-dv-itk-translation-stats

412: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-dv-itk-translation-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
412: Test timeout computed to be: 1500
412: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
412: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd
412: EXPECTED_ERRNO is 
403: RETVAL: 0
403: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872
403: 
403: STDERR: 
406: RETVAL: 0
406: STDOUT: Min:                -20.189     -0.190     -0.190
406: Mean:               -20.000     -0.000     -0.000
406: Max:                -19.810      0.190      0.190
406: Mean abs:            20.000      0.000      0.000
406: Ave len:             20.000
406: Jacobian:        MINJAC  0.978516 MAXJAC  1.02157
406: Energy:        MINDIL       -0.0216 MAXDIL    0.0215666
406:                MAXSTRAIN     0.0221 TOTSTRAIN 0.0501571
406: Second derivatives: MINSECDER          0 MAXSECDER    0.00749
406:                     AVESECDER   1.12e-05 INTSECDER    1.4e+03
406: Max second derivative at: (18 20 16)
406: 
406: STDERR: 
403: Not an error
303/571 Test #403: plm-bsp-dcos-f-stats ..................   Passed    0.35 sec
test 421
        Start 421: plm-reg-process-a-stats

421: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-process-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
421: Test timeout computed to be: 1500
406: Not an error
304/571 Test #406: plm-reg-multi-a-stats .................   Passed    0.35 sec
test 424
        Start 424: plm-reg-trans-a-stats

424: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
424: Test timeout computed to be: 1500
421: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
421: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha
421: EXPECTED_ERRNO is 
424: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
424: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha
424: EXPECTED_ERRNO is 
409: RETVAL: 0
409: STDOUT: MIN -1000.000183 AVE -985.762146 MAX 0.000000 NONZERO 54224 NUMVOX 54872
409: 
409: STDERR: 
409: Not an error
305/571 Test #409: plm-reg-multi-b-stats .................   Passed    0.34 sec
test 427
        Start 427: plm-reg-trans-b-stats

427: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
427: Test timeout computed to be: 1500
412: RETVAL: 0
412: STDOUT: MIN -999.914246 AVE -467.031616 MAX 1000.000000 NONZERO 54872 NUMVOX 54872
412: 
412: STDERR: 
427: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
427: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha
427: EXPECTED_ERRNO is 
412: Not an error
306/571 Test #412: plm-reg-dv-itk-translation-stats ......   Passed    0.34 sec
test 430
        Start 430: plm-reg-trans-mi-a-stats

430: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-mi-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
430: Test timeout computed to be: 1500
430: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
430: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha
430: EXPECTED_ERRNO is 
421: RETVAL: 0
421: STDOUT: MIN -500.000000 AVE -490.647552 MAX 0.000000 NONZERO 54871 NUMVOX 54872
421: 
421: STDERR: 
424: RETVAL: 0
424: STDOUT: MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872
424: 
424: STDERR: 
421: Not an error
424: Not an error
307/571 Test #421: plm-reg-process-a-stats ...............   Passed    0.34 sec
test 433
        Start 433: plm-reg-autores-a-stats

433: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
433: Test timeout computed to be: 1500
308/571 Test #424: plm-reg-trans-a-stats .................   Passed    0.33 sec
test 436
        Start 436: plm-reg-autores-b-stats

436: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
436: Test timeout computed to be: 1500
433: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
433: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha
433: EXPECTED_ERRNO is 
436: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
436: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha
436: EXPECTED_ERRNO is 
427: RETVAL: 0
427: STDOUT: MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872
427: 
427: STDERR: 
430: RETVAL: 0
430: STDOUT: MIN -999.826416 AVE -612.681030 MAX 0.000000 NONZERO 39701 NUMVOX 54872
430: 
430: STDERR: 
427: Not an error
309/571 Test #427: plm-reg-trans-b-stats .................   Passed    0.35 sec
test 442
        Start 442: plm-compose-a-stats

442: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
442: Test timeout computed to be: 1500
442: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
442: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha
442: EXPECTED_ERRNO is 
430: Not an error
310/571 Test #430: plm-reg-trans-mi-a-stats ..............   Passed    0.35 sec
test 446
        Start 446: plm-compose-b-stats

446: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
446: Test timeout computed to be: 1500
446: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
446: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha
446: EXPECTED_ERRNO is 
433: RETVAL: 0
433: STDOUT: MIN -999.770874 AVE -597.535889 MAX 0.000000 NONZERO 38880 NUMVOX 54872
433: 
433: STDERR: 
436: RETVAL: 0
436: STDOUT: MIN -999.769348 AVE -597.450806 MAX 0.000000 NONZERO 38880 NUMVOX 54872
436: 
436: STDERR: 
433: Not an error
311/571 Test #433: plm-reg-autores-a-stats ...............   Passed    0.35 sec
test 450
        Start 450: plm-compose-c-stats

450: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
450: Test timeout computed to be: 1500
450: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
450: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha
450: EXPECTED_ERRNO is 
436: Not an error
312/571 Test #436: plm-reg-autores-b-stats ...............   Passed    0.39 sec
test 453
        Start 453: plm-resample-a-stats

453: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
453: Test timeout computed to be: 1500
442: RETVAL: 0
442: STDOUT: Min:                  0.000     -1.573     -1.573
442: Mean:                13.794     -0.035     -0.034
442: Max:                 20.615      1.329      1.329
442: Mean abs:            13.794      0.281      0.281
442: Ave len:             13.805
442: Jacobian:        MINJAC  -6.27693 MAXJAC  1.08247
442: Energy:        MINDIL         -6.41 MAXDIL    0.0798482
442:                MAXSTRAIN       14.2 TOTSTRAIN 28436.8
442: Second derivatives: MINSECDER          0 MAXSECDER        165
442:                     AVESECDER        6.5 INTSECDER   8.13e+05
442: Max second derivative at: (30 18 18)
442: 
442: STDERR: 
453: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
453: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha
453: EXPECTED_ERRNO is 
442: Not an error
446: RETVAL: 0
446: STDOUT: Min:                  0.000     -1.573     -1.573
446: Mean:                13.794     -0.035     -0.034
446: Max:                 20.615      1.329      1.329
446: Mean abs:            13.794      0.281      0.281
446: Ave len:             13.805
446: Jacobian:        MINJAC  -6.27693 MAXJAC  1.08247
446: Energy:        MINDIL         -6.41 MAXDIL    0.0798482
446:                MAXSTRAIN       14.2 TOTSTRAIN 28436.8
446: Second derivatives: MINSECDER          0 MAXSECDER        165
446:                     AVESECDER        6.5 INTSECDER   8.13e+05
446: Max second derivative at: (30 18 18)
446: 
446: STDERR: 
313/571 Test #442: plm-compose-a-stats ...................   Passed    0.35 sec
test 456
        Start 456: plm-resample-b-stats

456: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
456: Test timeout computed to be: 1500
456: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
456: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha
456: EXPECTED_ERRNO is 
446: Not an error
314/571 Test #446: plm-compose-b-stats ...................   Passed    0.37 sec
test 459
        Start 459: plm-resample-c-stats

459: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
459: Test timeout computed to be: 1500
453: RETVAL: 0
453: STDOUT: MIN -999.857544 AVE -878.686035 MAX -12.873093 NONZERO 6859 NUMVOX 6859
453: 
453: STDERR: 
459: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
459: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha
459: EXPECTED_ERRNO is 
450: RETVAL: 0
450: STDOUT: Min:                  0.000     -2.171     -2.171
450: Mean:                12.523     -0.008     -0.008
450: Max:                 21.615      1.811      1.811
450: Mean abs:            12.523      0.418      0.418
450: Ave len:             12.552
450: Jacobian:        MINJAC  -6.97561 MAXJAC  1.2529
450: Energy:        MINDIL          -6.7 MAXDIL    0.315048
450:                MAXSTRAIN         47 TOTSTRAIN 30590.5
450: Second derivatives: MINSECDER          0 MAXSECDER   1.27e+03
450:                     AVESECDER       7.37 INTSECDER   9.21e+05
450: Max second derivative at: (30 20 27)
450: 
450: STDERR: 
450: Not an error
453: Not an error
315/571 Test #450: plm-compose-c-stats ...................   Passed    0.38 sec
test 462
        Start 462: plm-scale-a-stats

462: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
462: Test timeout computed to be: 1500
316/571 Test #453: plm-resample-a-stats ..................   Passed    0.33 sec
test 465
        Start 465: plm-scale-vf-a-stats

465: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-vf-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
465: Test timeout computed to be: 1500
465: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
465: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd
465: EXPECTED_ERRNO is 
462: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
462: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd
462: EXPECTED_ERRNO is 
456: RETVAL: 0
456: STDOUT: MIN -999.915161 AVE -878.621277 MAX -0.000005 NONZERO 64000 NUMVOX 64000
456: 
456: STDERR: 
459: RETVAL: 0
459: STDOUT: Min:                  1.219     -2.075     -2.075
459: Mean:                 6.707     -0.405     -0.405
459: Max:                 13.751      1.148      1.148
459: Mean abs:             6.707      0.706      0.706
459: Ave len:              6.825
459: Jacobian:        MINJAC  0.718591 MAXJAC  1.16208
459: Energy:        MINDIL        -0.304 MAXDIL    0.195159
459:                MAXSTRAIN      0.277 TOTSTRAIN -132.025
459: Second derivatives: MINSECDER   0.000246 MAXSECDER    0.00708
459:                     AVESECDER    0.00129 INTSECDER        161
459: Max second derivative at: (16 16 16)
459: 
459: STDERR: 
456: Not an error
317/571 Test #456: plm-resample-b-stats ..................   Passed    0.35 sec
test 467
        Start 467: plm-sift-a

467: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-sift-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=sift;--output-ps-1;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-1.fcsv;--output-ps-2;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-2.fcsv;--output-match-1;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv;--output-match-2;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
467: Test timeout computed to be: 1500
467: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
467: PARMS is sift;--output-ps-1;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-1.fcsv;--output-ps-2;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-2.fcsv;--output-match-1;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv;--output-match-2;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha
467: EXPECTED_ERRNO is 
459: Not an error
318/571 Test #459: plm-resample-c-stats ..................   Passed    0.32 sec
test 471
        Start 471: plm-thumbnail-a-stats

471: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
471: Test timeout computed to be: 1500
471: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
471: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png
471: EXPECTED_ERRNO is 
465: RETVAL: 0
465: STDOUT: Min:                  4.000      0.000      0.000
465: Mean:                 4.000      0.000      0.000
465: Max:                  4.000      0.000      0.000
465: Mean abs:             4.000      0.000      0.000
465: Ave len:              4.000
465: Jacobian:        MINJAC  1 MAXJAC  1
465: Energy:        MINDIL             0 MAXDIL    0
465:                MAXSTRAIN          0 TOTSTRAIN 0
465: Second derivatives: MINSECDER          0 MAXSECDER          0
465:                     AVESECDER          0 INTSECDER          0
465: Max second derivative at: (1 1 1)
465: 
465: STDERR: 
462: RETVAL: 0
462: STDOUT: MIN -400.000000 AVE -3.732322 MAX 0.000000 NONZERO 512 NUMVOX 54872
462: 
462: STDERR: 
465: Not an error
462: Not an error
319/571 Test #462: plm-scale-a-stats .....................   Passed    0.34 sec
test 474
        Start 474: plm-thumbnail-b-stats

474: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
474: Test timeout computed to be: 1500
320/571 Test #465: plm-scale-vf-a-stats ..................   Passed    0.34 sec
test 477
        Start 477: plm-thumbnail-c-stats

477: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
477: Test timeout computed to be: 1500
471: RETVAL: 0
471: STDOUT: MIN 0.000000 AVE 76.906250 MAX 255.000000 NONZERO 88 NUMVOX 256
471: 
471: STDERR: 
474: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
474: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png
474: EXPECTED_ERRNO is 
477: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
477: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png
477: EXPECTED_ERRNO is 
471: Not an error
321/571 Test #471: plm-thumbnail-a-stats .................   Passed    0.30 sec
test 480
        Start 480: plm-intersect-stats

480: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-intersect-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
480: Test timeout computed to be: 1500
480: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
480: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha
480: EXPECTED_ERRNO is 
477: RETVAL: 0
477: STDOUT: MIN 0.000000 AVE 8.203125 MAX 119.000000 NONZERO 32 NUMVOX 256
477: 
477: STDERR: 
474: RETVAL: 0
474: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 256
474: 
474: STDERR: 
477: Not an error
322/571 Test #477: plm-thumbnail-c-stats .................   Passed    0.31 sec
test 483
        Start 483: plm-union-stats

483: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-union-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
483: Test timeout computed to be: 1500
474: Not an error
323/571 Test #474: plm-thumbnail-b-stats .................   Passed    0.32 sec
test 486
        Start 486: plm-threshold-a-stats

486: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
486: Test timeout computed to be: 1500
483: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
483: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha
483: EXPECTED_ERRNO is 
486: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
486: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha
486: EXPECTED_ERRNO is 
480: RETVAL: 0
480: STDOUT: MIN 0.000000 AVE 0.013285 MAX 1.000000 NONZERO 729 NUMVOX 54872
480: 
480: STDERR: 
480: Not an error
324/571 Test #480: plm-intersect-stats ...................   Passed    0.36 sec
test 489
        Start 489: plm-threshold-b-stats

489: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
489: Test timeout computed to be: 1500
489: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
489: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha
489: EXPECTED_ERRNO is 
486: RETVAL: 0
486: STDOUT: MIN 0.000000 AVE 0.306732 MAX 1.000000 NONZERO 16831 NUMVOX 54872
486: 
486: STDERR: 
483: RETVAL: 0
483: STDOUT: MIN 0.000000 AVE 0.023163 MAX 1.000000 NONZERO 1271 NUMVOX 54872
483: 
483: STDERR: 
486: Not an error
325/571 Test #486: plm-threshold-a-stats .................   Passed    0.32 sec
test 492
        Start 492: plm-threshold-c-stats

492: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
492: Test timeout computed to be: 1500
492: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
492: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha
492: EXPECTED_ERRNO is 
483: Not an error
326/571 Test #483: plm-union-stats .......................   Passed    0.37 sec
test 498
        Start 498: plm-warp-a-stats

498: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
498: Test timeout computed to be: 1500
498: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
498: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha
498: EXPECTED_ERRNO is 
489: RETVAL: 0
489: STDOUT: MIN 0.000000 AVE 0.671290 MAX 1.000000 NONZERO 36835 NUMVOX 54872
489: 
489: STDERR: 
489: Not an error
327/571 Test #489: plm-threshold-b-stats .................   Passed    0.35 sec
test 501
        Start 501: plm-warp-b-stats-1

501: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
501: Test timeout computed to be: 1500
501: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
501: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha
501: EXPECTED_ERRNO is 
492: RETVAL: 0
492: STDOUT: MIN 0.000000 AVE 0.021978 MAX 1.000000 NONZERO 1206 NUMVOX 54872
492: 
492: STDERR: 
492: Not an error
328/571 Test #492: plm-threshold-c-stats .................   Passed    0.30 sec
test 503
        Start 503: plm-warp-b-stats-2

503: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
503: Test timeout computed to be: 1500
498: RETVAL: 0
498: STDOUT: Min:                  0.875     -1.519     -1.519
498: Mean:                 5.773      0.002      0.002
498: Max:                 12.239      1.255      1.255
498: Mean abs:             5.773      0.518      0.518
498: Ave len:              5.853
498: Jacobian:        MINJAC  0.815198 MAXJAC  1.18104
498: Energy:        MINDIL        -0.184 MAXDIL    0.216011
498:                MAXSTRAIN      0.267 TOTSTRAIN 1114.81
498: Second derivatives: MINSECDER    0.00025 MAXSECDER    0.00723
498:                     AVESECDER    0.00122 INTSECDER        152
498: Max second derivative at: (15 15 15)
498: 
498: STDERR: 
503: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
503: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha
503: EXPECTED_ERRNO is 
498: Not an error
329/571 Test #498: plm-warp-a-stats ......................   Passed    0.32 sec
test 506
        Start 506: plm-warp-c-stats

506: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
506: Test timeout computed to be: 1500
506: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
506: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha
506: EXPECTED_ERRNO is 
501: RETVAL: 0
501: STDOUT: Min:                  0.875     -1.519     -1.519
501: Mean:                 5.773      0.002      0.002
501: Max:                 12.239      1.255      1.255
501: Mean abs:             5.773      0.518      0.518
501: Ave len:              5.853
501: Jacobian:        MINJAC  0.815198 MAXJAC  1.18104
501: Energy:        MINDIL        -0.184 MAXDIL    0.216011
501:                MAXSTRAIN      0.267 TOTSTRAIN 1114.81
501: Second derivatives: MINSECDER    0.00025 MAXSECDER    0.00723
501:                     AVESECDER    0.00122 INTSECDER        152
501: Max second derivative at: (15 15 15)
501: 
501: STDERR: 
501: Not an error
330/571 Test #501: plm-warp-b-stats-1 ....................   Passed    0.34 sec
test 509
        Start 509: plm-warp-d-stats

509: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
509: Test timeout computed to be: 1500
509: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
509: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha
509: EXPECTED_ERRNO is 
503: RETVAL: 0
503: STDOUT: MIN -999.876892 AVE -775.668274 MAX 0.000000 NONZERO 49099 NUMVOX 54872
503: 
503: STDERR: 
503: Not an error
331/571 Test #503: plm-warp-b-stats-2 ....................   Passed    0.30 sec
test 512
        Start 512: plm-warp-f-stats-1

512: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-f-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-warp-f-img.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
512: Test timeout computed to be: 1500
512: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
512: PARMS is header;plm-warp-f-img.nrrd
512: EXPECTED_ERRNO is 
506: RETVAL: 0
506: STDOUT: MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872
506: 
506: STDERR: 
506: Not an error
332/571 Test #506: plm-warp-c-stats ......................   Passed    0.36 sec
test 515
        Start 515: plm-warp-g-stats-1

515: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-g-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
515: Test timeout computed to be: 1500
515: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
515: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd
515: EXPECTED_ERRNO is 
509: RETVAL: 0
509: STDOUT: MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872
509: 
509: STDERR: 
512: RETVAL: 0
512: STDOUT: Type = float
512: Planes = 1
512: Origin = -147.5140 -381.8964 -136.9799
512: Size = 38 38 38
512: Spacing = 13.1579 13.1579 13.1579
512: Direction = 0.9254 0.0180 -0.3785 0.1632 0.8826 0.4410 0.3420 -0.4698 0.8138
512: 
512: STDERR: 
515: RETVAL: 0
515: STDOUT: MIN -1000.000000 AVE -763.820862 MAX 0.000000 NONZERO 42085 NUMVOX 54872
515: 
515: STDERR: 
509: Not an error
333/571 Test #509: plm-warp-d-stats ......................   Passed    0.39 sec
test 518
        Start 518: plm-warp-h-stats-1

518: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-h-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;plm-warp-h-img.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
518: Test timeout computed to be: 1500
515: Not an error
512: Not an error
334/571 Test #515: plm-warp-g-stats-1 ....................   Passed    0.23 sec
test 521
        Start 521: plm-warp-i-stats-1

521: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-i-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;plm-warp-i-img.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
521: Test timeout computed to be: 1500
518: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
518: PARMS is stats;plm-warp-h-img.nrrd
518: EXPECTED_ERRNO is 
335/571 Test #512: plm-warp-f-stats-1 ....................   Passed    0.35 sec
test 524
        Start 524: plm-xf-convert-b

524: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output-type;bspline;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;--grid-spacing;10 10 10" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
524: Test timeout computed to be: 1500
521: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
521: PARMS is stats;plm-warp-i-img.nrrd
521: EXPECTED_ERRNO is 
524: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
524: PARMS is xf-convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output-type;bspline;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;--grid-spacing;10 10 10
524: EXPECTED_ERRNO is 
524: RETVAL: 0
524: STDOUT: about to xform_convert
524: bspline_xform_initialize
524: Warning: vox_per_rgn was less than 4.
524: Warning: vox_per_rgn was less than 4.
524: Warning: vox_per_rgn was less than 4.
524: rdims = (1,1,1)
524: vox_per_rgn = (4,4,4)
524: cdims = (4 4 4)
524: did xform_convert
524: 
524: STDERR: 
518: RETVAL: 0
518: STDOUT: MIN 0.000000 AVE 113.750511 MAX 996.000000 NONZERO 42867 NUMVOX 54872
518: 
518: STDERR: 
521: RETVAL: 0
521: STDOUT: MIN 0.000000 AVE 114.545189 MAX 996.552368 NONZERO 43320 NUMVOX 54872
521: 
521: STDERR: 
518: Not an error
524: Not an error
336/571 Test #518: plm-warp-h-stats-1 ....................   Passed    0.33 sec
test 528
        Start 528: plm-xf-convert-d-warp-1-stats

528: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
528: Test timeout computed to be: 1500
337/571 Test #524: plm-xf-convert-b ......................   Passed    0.30 sec
test 531
        Start 531: plm-xf-convert-d-warp-2-stats

531: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-2-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
531: Test timeout computed to be: 1500
528: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
528: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd
528: EXPECTED_ERRNO is 
531: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
531: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd
531: EXPECTED_ERRNO is 
521: Not an error
338/571 Test #521: plm-warp-i-stats-1 ....................   Passed    0.35 sec
test 537
        Start 537: plm-xf-convert-h-stats

537: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-h-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
537: Test timeout computed to be: 1500
537: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
537: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd
537: EXPECTED_ERRNO is 
528: RETVAL: 0
528: STDOUT: MIN -999.979248 AVE -745.231567 MAX 0.000000 NONZERO 5851 NUMVOX 6859
528: 
528: STDERR: 
528: Not an error
339/571 Test #528: plm-xf-convert-d-warp-1-stats .........   Passed    0.23 sec
test 540
        Start 540: xf-invert-vf-zero-1-stats

540: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-zero-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
540: Test timeout computed to be: 1500
540: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
540: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha
540: EXPECTED_ERRNO is 
531: RETVAL: 0
531: STDOUT: MIN -999.991089 AVE -748.668152 MAX 0.000000 NONZERO 46980 NUMVOX 54872
531: 
531: STDERR: 
537: RETVAL: 0
537: STDOUT: Min:                 20.000      0.000      0.000
537: Mean:                20.000      0.000      0.000
537: Max:                 20.000      0.000      0.000
537: Mean abs:            20.000      0.000      0.000
537: Ave len:             20.000
537: Jacobian:        MINJAC  1 MAXJAC  1
537: Energy:        MINDIL             0 MAXDIL    0
537:                MAXSTRAIN          0 TOTSTRAIN 0
537: Second derivatives: MINSECDER          0 MAXSECDER          0
537:                     AVESECDER          0 INTSECDER          0
537: Max second derivative at: (1 1 1)
537: 
537: STDERR: 
531: Not an error
340/571 Test #531: plm-xf-convert-d-warp-2-stats .........   Passed    0.39 sec
test 543
        Start 543: xf-invert-vf-trans-1-stats

543: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-trans-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
543: Test timeout computed to be: 1500
537: Not an error
341/571 Test #537: plm-xf-convert-h-stats ................   Passed    0.36 sec
test 545
        Start 545: xf-invert-vrs-a

545: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vrs-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
545: Test timeout computed to be: 1500
543: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
543: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha
543: EXPECTED_ERRNO is 
545: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
545: PARMS is xf-invert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm
545: EXPECTED_ERRNO is 
540: RETVAL: 0
540: STDOUT: Min:                  0.000      0.000      0.000
540: Mean:                 0.000      0.000      0.000
540: Max:                  0.000      0.000      0.000
540: Mean abs:             0.000      0.000      0.000
540: Ave len:              0.000
540: Jacobian:        MINJAC  1 MAXJAC  1
540: Energy:        MINDIL             0 MAXDIL    0
540:                MAXSTRAIN          0 TOTSTRAIN 0
540: Second derivatives: MINSECDER          0 MAXSECDER          0
540:                     AVESECDER          0 INTSECDER          0
540: Max second derivative at: (1 1 1)
540: 
540: STDERR: 
540: Not an error
342/571 Test #540: xf-invert-vf-zero-1-stats .............   Passed    0.27 sec
test 547
        Start 547: xf-invert-vrs-b

547: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vrs-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-rigid-b.tfm;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
547: Test timeout computed to be: 1500
547: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
547: PARMS is xf-invert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-rigid-b.tfm;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm
547: EXPECTED_ERRNO is 
545: RETVAL: 0
545: STDOUT: 
545: STDERR: 
543: RETVAL: 0
543: STDOUT: Min:                -10.000      0.000      0.000
543: Mean:                -9.999      0.000      0.000
543: Max:                 -9.963      0.000      0.000
543: Mean abs:             9.999      0.000      0.000
543: Ave len:              9.999
543: Jacobian:        MINJAC  0.998589 MAXJAC  1
543: Energy:        MINDIL      -0.00141 MAXDIL    3.62396e-08
543:                MAXSTRAIN   3.62e-08 TOTSTRAIN -2.78625
543: Second derivatives: MINSECDER          0 MAXSECDER   2.19e-06
543:                     AVESECDER   5.23e-08 INTSECDER       6.54
543: Max second derivative at: (2 1 1)
543: 
543: STDERR: 
545: Not an error
343/571 Test #545: xf-invert-vrs-a .......................   Passed    0.28 sec
test 550
        Start 550: proton-dose-1-stats

550: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
550: Test timeout computed to be: 1500
547: RETVAL: 0
547: STDOUT: 
547: STDERR: 
550: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
550: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha
550: EXPECTED_ERRNO is 
543: Not an error
547: Not an error
344/571 Test #547: xf-invert-vrs-b .......................   Passed    0.25 sec
test 553
        Start 553: proton-dose-4a-stats

553: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
553: Test timeout computed to be: 1500
345/571 Test #543: xf-invert-vf-trans-1-stats ............   Passed    0.36 sec
test 556
        Start 556: proton-dose-4d-stats

556: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
556: Test timeout computed to be: 1500
553: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
553: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha
553: EXPECTED_ERRNO is 
556: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
556: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha
556: EXPECTED_ERRNO is 
550: RETVAL: 0
550: STDOUT: MIN 0.000000 AVE 0.143515 MAX 70.000000 NONZERO 775 NUMVOX 216000
550: 
550: STDERR: 
550: Not an error
346/571 Test #550: proton-dose-1-stats ...................   Passed    0.30 sec
test 559
        Start 559: proton-dose-5a-stats

559: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
559: Test timeout computed to be: 1500
556: RETVAL: 0
556: STDOUT: MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000
556: 
556: STDERR: 
559: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
559: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha
559: EXPECTED_ERRNO is 
553: RETVAL: 0
553: STDOUT: MIN 0.000000 AVE 0.266114 MAX 100.000000 NONZERO 932 NUMVOX 216000
553: 
553: STDERR: 
556: Not an error
347/571 Test #556: proton-dose-4d-stats ..................   Passed    0.34 sec
test 562
        Start 562: proton-dose-5d-stats

562: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
562: Test timeout computed to be: 1500
562: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
562: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha
562: EXPECTED_ERRNO is 
553: Not an error
348/571 Test #553: proton-dose-4a-stats ..................   Passed    0.41 sec
test 565
        Start 565: proton-dose-6a-stats

565: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-6a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
565: Test timeout computed to be: 1500
565: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
565: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha
565: EXPECTED_ERRNO is 
559: RETVAL: 0
559: STDOUT: MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000
559: 
559: STDERR: 
559: Not an error
349/571 Test #559: proton-dose-5a-stats ..................   Passed    0.33 sec
test 567
        Start 567: proton-dose-8d

567: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-8d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
567: Test timeout computed to be: 1500
567: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
567: PARMS is dose;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.txt
567: EXPECTED_ERRNO is 
562: RETVAL: 0
562: STDOUT: MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000
562: 
562: STDERR: 
565: RETVAL: 0
565: STDOUT: MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000
565: 
565: STDERR: 
562: Not an error
350/571 Test #562: proton-dose-5d-stats ..................   Passed    0.36 sec
test 569
        Start 569: wed-a

569: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=wed-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=wed;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
569: Test timeout computed to be: 1500
569: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
569: PARMS is wed;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a.txt
569: EXPECTED_ERRNO is 
565: Not an error
351/571 Test #565: proton-dose-6a-stats ..................   Passed    0.33 sec
test 16
        Start  16: gauss-7

16: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-7" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;20 20 20" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
16: Test timeout computed to be: 1500
16: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
16: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;20 20 20
16: EXPECTED_ERRNO is 
567: RETVAL: 0
567: STDOUT: 
567:  [PLAN]
567:  patient : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha
567:  target : 
567:  dose_out : /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha
567:  debug : 0
567:  dose norm : 100
567:  
567:  [SETTINGS]
567:  flavor: d ** 
567:  homo_approx: n ** 
567:  ray_step: 1 ** 
567:  aperture_out:  ** 
567:  proj_dose_out:  ** 
567:  proj_img_out:  ** 
567:  range_comp_out:  ** 
567:  sigma_out:  ** 
567:  wed_out:  ** 
567:  beam_weight: 1 ** 
567:  
567:  [GEOMETRY & APERTURE]
567:  source: 0 -2000 0 ** 
567:  isocenter: 0 0 0 ** 
567:  vup: 0 0 1 ** 
567:  offset: 1500 ** 
567:  ap_center in pixels: 20 20 ** 
567:  i_res: 41 41 ** 
567:  spacing: 3.75 3.75 ** 
567:  source_size: 0 ** 
567:  ap_file_in:  ** 
567:  rc_file_in:  ** 
567:  smearing: 5 ** 
567:  
567:  [PEAK]
567:  E0: P0 
567:  spread: P0 
567:  weight: P0 
567: 
567: Start dose calculation Beam 1
567: Plan_calc::compute_beam_dose(beam) entry --
567: Setting RVRTS = 1
567: FPD = 347.500001, BPD = 649.116731
567: 41 41 302 
567: Setting RVRTS = 1
567: FPD = 347.500001, BPD = 649.116731
567: 41 41 302 
567: FPD = 347.500001, BPD = 649.116731
567: 41 41 302 
567: Setting RVRTS = 1
567: FPD = 347.500001, BPD = 649.116731
567: 41 41 302 
567: Priority 1. Beamlet map file detected: Any manual peaks set, depth prescription, target or range compensator will not be considered.
567: Dose is null in the entire volume. Please check your input conditions.
567: 1 x 100%.
567: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm
567: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha
567: Sigma:     0.000000 seconds
567: Calc:      0.101589 seconds
567: IO:        0.071378 seconds
567: Reformat:  0.022136 seconds
567: Misc:      0.005087 seconds
567: done.  
567: 
567: Total execution time : 0.207577 seconds.
567: 
567: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
567: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
567: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
567: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
567: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
567: 
16: RETVAL: 0
16: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha
16: 
16: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
16: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
16: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
16: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
16: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
16: 
567: Not an error
352/571 Test #567: proton-dose-8d ........................   Passed    0.47 sec
test 23
        Start  23: gw-lung-a

23: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha;--pattern;lung;--lung-tumor-pos;-5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
23: Test timeout computed to be: 1500
16: Not an error
23: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
23: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha;--pattern;lung;--lung-tumor-pos;-5
23: EXPECTED_ERRNO is 
353/571 Test  #16: gauss-7 ...............................   Passed    0.31 sec
test 24
        Start  24: gw-lung-b

24: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha;--pattern;lung;--lung-tumor-pos;0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
24: Test timeout computed to be: 1500
24: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
24: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha;--pattern;lung;--lung-tumor-pos;0
24: EXPECTED_ERRNO is 
23: RETVAL: 0
23: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha
23: 
23: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
23: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
23: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
23: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
23: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
23: 
24: RETVAL: 0
24: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha
24: 
24: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
24: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
24: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
24: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
24: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
24: 
23: Not an error
354/571 Test  #23: gw-lung-a .............................   Passed    0.48 sec
test 25
        Start  25: gw-lung-c

25: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha;--pattern;lung;--lung-tumor-pos;5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
25: Test timeout computed to be: 1500
24: Not an error
355/571 Test  #24: gw-lung-b .............................   Passed    0.49 sec
test 34
        Start  34: rect-6

34: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-6" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;0 -300 -200;--direction-cosines;rotated-2" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
34: Test timeout computed to be: 1500
25: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
25: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha;--pattern;lung;--lung-tumor-pos;5
25: EXPECTED_ERRNO is 
34: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
34: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;0 -300 -200;--direction-cosines;rotated-2
34: EXPECTED_ERRNO is 
34: RETVAL: 0
34: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha
34: 
34: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
34: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
34: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
34: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
34: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
34: 
34: Not an error
356/571 Test  #34: rect-6 ................................   Passed    0.31 sec
test 35
        Start  35: rect-7

35: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-7" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;100 300 -100;--direction-cosines;rotated-3" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
35: Test timeout computed to be: 1500
35: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
35: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;100 300 -100;--direction-cosines;rotated-3
35: EXPECTED_ERRNO is 
25: RETVAL: 0
25: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha
25: 
25: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
25: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
25: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
25: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
25: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
25: 
25: Not an error
357/571 Test  #25: gw-lung-c .............................   Passed    0.53 sec
test 40
        Start  40: rect-10-roi-2

40: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10-roi-2" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-220 60 -60 60 -60 60" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
40: Test timeout computed to be: 1500
40: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
40: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-220 60 -60 60 -60 60
40: EXPECTED_ERRNO is 
35: RETVAL: 0
35: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha
35: 
35: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
35: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
35: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
35: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
35: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
35: 
35: Not an error
358/571 Test  #35: rect-7 ................................   Passed    0.29 sec
test 49
        Start  49: rect-18

49: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-18" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha;--pattern;rect;--dim;15 15 15;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;20 20 20" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
49: Test timeout computed to be: 1500
49: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
49: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha;--pattern;rect;--dim;15 15 15;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;20 20 20
49: EXPECTED_ERRNO is 
40: RETVAL: 0
40: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha
40: 
40: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
40: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
40: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
40: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
40: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
40: 
40: Not an error
359/571 Test  #40: rect-10-roi-2 .........................   Passed    0.30 sec
test 59
        Start  59: rgc-1

59: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rgc-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha;--output-type;float;--pattern;rect;--dim;10 10 1;--background;0;--foreground;30;--rect-size;0 10 0 5 0 0;--origin;0 0 0;--spacing;1 1 1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
59: Test timeout computed to be: 1500
49: RETVAL: 0
49: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha
49: 
49: STDERR: 
59: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
59: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha;--output-type;float;--pattern;rect;--dim;10 10 1;--background;0;--foreground;30;--rect-size;0 10 0 5 0 0;--origin;0 0 0;--spacing;1 1 1
59: EXPECTED_ERRNO is 
49: Not an error
360/571 Test  #49: rect-18 ...............................   Passed    0.38 sec
test 68
        Start  68: xramp-1

68: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xramp-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha;--output-type;float;--pattern;xramp;--dim;38 38 38" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
68: Test timeout computed to be: 1500
59: RETVAL: 0
59: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha
59: 
59: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
59: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
59: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
59: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
59: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
59: 
68: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
68: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha;--output-type;float;--pattern;xramp;--dim;38 38 38
68: EXPECTED_ERRNO is 
59: Not an error
361/571 Test  #59: rgc-1 .................................   Passed    0.28 sec
test 69
        Start  69: yramp-1

69: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=yramp-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha;--output-type;float;--pattern;yramp;--dim;38 38 38" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
69: Test timeout computed to be: 1500
69: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
69: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha;--output-type;float;--pattern;yramp;--dim;38 38 38
69: EXPECTED_ERRNO is 
68: RETVAL: 0
68: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha
68: 
68: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
68: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
68: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
68: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
68: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
68: 
69: RETVAL: 0
69: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha
69: 
69: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
69: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
69: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
69: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
69: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
69: 
68: Not an error
362/571 Test  #68: xramp-1 ...............................   Passed    0.42 sec
test 70
        Start  70: zramp-1

70: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=zramp-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha;--output-type;float;--pattern;zramp;--dim;38 38 38" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
70: Test timeout computed to be: 1500
69: Not an error
363/571 Test  #69: yramp-1 ...............................   Passed    0.31 sec
test 75
        Start  75: vf-gaussian-1

75: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-gaussian-1" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha;--xf-gauss;--gauss-center;0 0 0;--gauss-mag;10 20 0;--gauss-std;100 100 100;--dim;38 38 38" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
75: Test timeout computed to be: 1500
70: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
70: PARMS is synth;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha;--output-type;float;--pattern;zramp;--dim;38 38 38
70: EXPECTED_ERRNO is 
75: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
75: PARMS is synth-vf;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha;--xf-gauss;--gauss-center;0 0 0;--gauss-mag;10 20 0;--gauss-std;100 100 100;--dim;38 38 38
75: EXPECTED_ERRNO is 
70: RETVAL: 0
70: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha
70: 
70: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
70: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
70: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
70: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
70: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
70: 
75: RETVAL: 0
75: STDOUT: Setting header
75: Origin = -243.4211 -243.4211 -243.4211
75: Size = 38 38 38
75: Spacing = 13.1579 13.1579 13.1579
75: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
75: Header was set
75: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha
75: 
75: STDERR: 
75: Not an error
364/571 Test  #75: vf-gaussian-1 .........................   Passed    0.33 sec
test 77
        Start  77: vf-zero-check

77: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=0.000" "-DUPPER_THRESH=0.000" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
77: Test timeout computed to be: 1500
70: Not an error
365/571 Test  #70: zramp-1 ...............................   Passed    0.34 sec
test 79
        Start  79: vf-trans-1-check

79: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=10.000" "-DUPPER_THRESH=10.000" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
79: Test timeout computed to be: 1500
77: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero-stats.stdout.txt
77: -- REGEX is Mean abs: *([-0-9.]*)
77: -- LOWER_THRESH is 0.000
77: -- UPPER_THRESH is 0.000
77: -- PARSED VALUE=|Mean abs:             0.000      0.000      0.000|
77: -- PARSED_VALUE=|0.000|
77: Not an error
366/571 Test  #77: vf-zero-check .........................   Passed    0.03 sec
test 81
        Start  81: vf-trans-2-check

81: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2-stats.stdout.txt" "-DREGEX=Mean: *[-0-9.]* *([-0-9.]*)" "-DLOWER_THRESH=10.000" "-DUPPER_THRESH=10.000" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
81: Test timeout computed to be: 1500
79: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1-stats.stdout.txt
79: -- REGEX is Mean: *([-0-9.]*)
79: -- LOWER_THRESH is 10.000
79: -- UPPER_THRESH is 10.000
79: -- PARSED VALUE=|Mean:                10.000      0.000      0.000|
79: -- PARSED_VALUE=|10.000|
79: Not an error
367/571 Test  #79: vf-trans-1-check ......................   Passed    0.03 sec
test 83
        Start  83: vf-radial-1-check

83: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=5.15" "-DUPPER_THRESH=5.16" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
83: Test timeout computed to be: 1500
83: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1-stats.stdout.txt
83: -- REGEX is Mean abs: *([-0-9.]*)
83: -- LOWER_THRESH is 5.15
83: -- UPPER_THRESH is 5.16
83: -- PARSED VALUE=|Mean abs:             5.157      5.157      5.157|
83: -- PARSED_VALUE=|5.157|
83: Not an error
368/571 Test  #83: vf-radial-1-check .....................   Passed    0.03 sec
test 85
        Start  85: plm-compare-a-check

85: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-a.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=7.76" "-DUPPER_THRESH=7.78" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
85: Test timeout computed to be: 1500
81: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2-stats.stdout.txt
81: -- REGEX is Mean: *[-0-9.]* *([-0-9.]*)
81: -- LOWER_THRESH is 10.000
81: -- UPPER_THRESH is 10.000
81: -- PARSED VALUE=|Mean:                 0.000     10.000      0.000|
81: -- PARSED_VALUE=|10.000|
81: Not an error
369/571 Test  #81: vf-trans-2-check ......................   Passed    0.04 sec
test 87
        Start  87: plm-compare-b-check

87: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-b.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
87: Test timeout computed to be: 1500
85: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-a.stdout.txt
85: -- REGEX is AVE *([-0-9.]*)
85: -- LOWER_THRESH is 7.76
85: -- UPPER_THRESH is 7.78
85: -- PARSED VALUE=|MIN -558.201904 AVE 7.769665 MAX 558.680786|
85: -- PARSED_VALUE=|7.769665|
85: Not an error
370/571 Test  #85: plm-compare-a-check ...................   Passed    0.03 sec
test 89
        Start  89: plm-compare-c-check

89: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-c.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
89: Test timeout computed to be: 1500
87: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-b.stdout.txt
87: -- REGEX is Ave len: *([-0-9.]*)
87: -- LOWER_THRESH is 14.141
87: -- UPPER_THRESH is 14.143
87: -- PARSED VALUE=|Ave len:             14.142|
87: -- PARSED_VALUE=|14.142|
87: Not an error
371/571 Test  #87: plm-compare-b-check ...................   Passed    0.03 sec
test 92
        Start  92: plm-diff-a-check

92: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=7.76" "-DUPPER_THRESH=7.78" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
92: Test timeout computed to be: 1500
89: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-c.stdout.txt
89: -- REGEX is Ave len: *([-0-9.]*)
89: -- LOWER_THRESH is 14.141
89: -- UPPER_THRESH is 14.143
89: -- PARSED VALUE=|Ave len:             14.142|
89: -- PARSED_VALUE=|14.142|
89: Not an error
372/571 Test  #89: plm-compare-c-check ...................   Passed    0.03 sec
test 95
        Start  95: plm-diff-b-check

95: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-stats.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
95: Test timeout computed to be: 1500
92: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-stats.stdout.txt
92: -- REGEX is AVE *([-0-9.]*)
92: -- LOWER_THRESH is 7.76
92: -- UPPER_THRESH is 7.78
92: -- PARSED VALUE=|MIN -558.201904 AVE 7.769665 MAX 558.680786 NONZERO 54872 NUMVOX 54872|
92: -- PARSED_VALUE=|7.769665|
92: Not an error
373/571 Test  #92: plm-diff-a-check ......................   Passed    0.04 sec
test 97
        Start  97: demons-a-check

97: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.stdout.txt" "-DREGEX=^Mean: *([0-9.]*)" "-DLOWER_THRESH=3.4" "-DUPPER_THRESH=3.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
97: Test timeout computed to be: 1500
95: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-stats.stdout.txt
95: -- REGEX is Ave len: *([-0-9.]*)
95: -- LOWER_THRESH is 14.141
95: -- UPPER_THRESH is 14.143
95: -- PARSED VALUE=|Ave len:             14.142|
95: -- PARSED_VALUE=|14.142|
95: Not an error
374/571 Test  #95: plm-diff-b-check ......................   Passed    0.03 sec
test 100
        Start 100: drr-a-check

100: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=0.045" "-DUPPER_THRESH=0.055" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
100: Test timeout computed to be: 1500
97: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.stdout.txt
97: -- REGEX is ^Mean: *([0-9.]*)
97: -- LOWER_THRESH is 3.4
97: -- UPPER_THRESH is 3.5
97: -- PARSED VALUE=|Mean:                 3.443      0.016      0.016|
97: -- PARSED_VALUE=|3.443|
97: Not an error
375/571 Test  #97: demons-a-check ........................   Passed    0.03 sec
test 103
        Start 103: drr-b-check

103: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=0.045" "-DUPPER_THRESH=0.055" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
103: Test timeout computed to be: 1500
100: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a-stats.stdout.txt
100: -- REGEX is MAX *([-0-9.]*)
100: -- LOWER_THRESH is 0.045
100: -- UPPER_THRESH is 0.055
100: -- PARSED VALUE=|MIN 0.000000 AVE 0.000135 MAX 0.050109 NUM 16384|
100: -- PARSED_VALUE=|0.050109|
100: Not an error
376/571 Test #100: drr-a-check ...........................   Passed    0.03 sec
test 106
        Start 106: drr-c-check

106: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=0.045" "-DUPPER_THRESH=0.055" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
106: Test timeout computed to be: 1500
103: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b-stats.stdout.txt
103: -- REGEX is MAX *([-0-9.]*)
103: -- LOWER_THRESH is 0.045
103: -- UPPER_THRESH is 0.055
103: -- PARSED VALUE=|MIN 0.000000 AVE 0.000138 MAX 0.049634 NUM 16384|
103: -- PARSED_VALUE=|0.049634|
103: Not an error
377/571 Test #103: drr-b-check ...........................   Passed    0.03 sec
test 109
        Start 109: fdk-cpu-a-check

109: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=-987.5" "-DUPPER_THRESH=-986.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
109: Test timeout computed to be: 1500
106: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c-stats.stdout.txt
106: -- REGEX is MAX *([-0-9.]*)
106: -- LOWER_THRESH is 0.045
106: -- UPPER_THRESH is 0.055
106: -- PARSED VALUE=|MIN 0.000000 AVE 0.000125 MAX 0.050494 NUM 16384|
106: -- PARSED_VALUE=|0.050494|
106: Not an error
378/571 Test #106: drr-c-check ...........................   Passed    0.03 sec
test 112
        Start 112: fdk-cpu-d-check

112: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=-987.5" "-DUPPER_THRESH=-986.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
112: Test timeout computed to be: 1500
109: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a-stats.stdout.txt
109: -- REGEX is MAX *([-0-9.]*)
109: -- LOWER_THRESH is -987.5
109: -- UPPER_THRESH is -986.5
109: -- PARSED VALUE=|MIN -1000.000000 AVE -999.859619 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600|
109: -- PARSED_VALUE=|-987.021973|
109: Not an error
379/571 Test #109: fdk-cpu-a-check .......................   Passed    0.03 sec
test 115
        Start 115: landmark-warp-a-check-1

115: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.0" "-DUPPER_THRESH=-991.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
115: Test timeout computed to be: 1500
112: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d-stats.stdout.txt
112: -- REGEX is MAX *([-0-9.]*)
112: -- LOWER_THRESH is -987.5
112: -- UPPER_THRESH is -986.5
112: -- PARSED VALUE=|MIN -1000.000000 AVE -999.848633 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600|
112: -- PARSED_VALUE=|-987.021973|
112: Not an error
380/571 Test #112: fdk-cpu-d-check .......................   Passed    0.03 sec
test 117
        Start 117: landmark-warp-a-check-2

117: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-2.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-23.2" "-DUPPER_THRESH=-22.7" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
117: Test timeout computed to be: 1500
115: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-1.stdout.txt
115: -- REGEX is AVE *([-0-9.]*)
115: -- LOWER_THRESH is -992.0
115: -- UPPER_THRESH is -991.5
115: -- PARSED VALUE=|MIN -1000.000000 AVE -991.799744 MAX 0.000000 NONZERO 54494 NUMVOX 54872|
115: -- PARSED_VALUE=|-991.799744|
115: Not an error
381/571 Test #115: landmark-warp-a-check-1 ...............   Passed    0.03 sec
test 120
        Start 120: landmark-warp-b-check-1

120: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.2" "-DUPPER_THRESH=-991.8" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
120: Test timeout computed to be: 1500
117: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-2.stdout.txt
117: -- REGEX is Mean: *([-0-9.]*)
117: -- LOWER_THRESH is -23.2
117: -- UPPER_THRESH is -22.7
117: -- PARSED VALUE=|Mean:               -22.960      0.011      0.000|
117: -- PARSED_VALUE=|-22.960|
117: Not an error
382/571 Test #117: landmark-warp-a-check-2 ...............   Passed    0.03 sec
test 122
        Start 122: landmark-warp-b-check-2

122: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-2.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-1.55" "-DUPPER_THRESH=-1.4" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
122: Test timeout computed to be: 1500
120: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-1.stdout.txt
120: -- REGEX is AVE *([-0-9.]*)
120: -- LOWER_THRESH is -992.2
120: -- UPPER_THRESH is -991.8
120: -- PARSED VALUE=|MIN -1000.000122 AVE -992.005493 MAX 0.000000 NONZERO 54512 NUMVOX 54872|
120: -- PARSED_VALUE=|-992.005493|
120: Not an error
383/571 Test #120: landmark-warp-b-check-1 ...............   Passed    0.03 sec
test 125
        Start 125: landmark-warp-c-check-1

125: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.0" "-DUPPER_THRESH=-991.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
125: Test timeout computed to be: 1500
122: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-2.stdout.txt
122: -- REGEX is Mean: *([-0-9.]*)
122: -- LOWER_THRESH is -1.55
122: -- UPPER_THRESH is -1.4
122: -- PARSED VALUE=|Mean:                -1.500      0.018      0.000|
122: -- PARSED_VALUE=|-1.500|
122: Not an error
384/571 Test #122: landmark-warp-b-check-2 ...............   Passed    0.03 sec
test 127
        Start 127: landmark-warp-c-check-2

127: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-2.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-1.6" "-DUPPER_THRESH=-1.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
127: Test timeout computed to be: 1500
125: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-1.stdout.txt
125: -- REGEX is AVE *([-0-9.]*)
125: -- LOWER_THRESH is -992.0
125: -- UPPER_THRESH is -991.5
125: -- PARSED VALUE=|MIN -1000.000122 AVE -991.665894 MAX 0.000000 NONZERO 54484 NUMVOX 54872|
125: -- PARSED_VALUE=|-991.665894|
125: Not an error
385/571 Test #125: landmark-warp-c-check-1 ...............   Passed    0.03 sec
test 128
        Start 128: landmark-warp-d

128: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;tps;-f;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha;-V;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha;-L;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
128: Test timeout computed to be: 1500
127: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-2.stdout.txt
127: -- REGEX is Mean: *([-0-9.]*)
127: -- LOWER_THRESH is -1.6
127: -- UPPER_THRESH is -1.5
127: -- PARSED VALUE=|Mean:                -1.562      0.019      0.000|
127: -- PARSED_VALUE=|-1.562|
127: Not an error
386/571 Test #127: landmark-warp-c-check-2 ...............   Passed    0.04 sec
test 131
        Start 131: plm-add-a-check

131: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1000.1" "-DUPPER_THRESH=-999.9" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
131: Test timeout computed to be: 1500
128: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
128: PARMS is lm-warp;-a;tps;-f;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha;-V;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha;-L;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv
128: EXPECTED_ERRNO is 
131: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a-stats.stdout.txt
131: -- REGEX is AVE *([-0-9.]*)
131: -- LOWER_THRESH is -1000.1
131: -- UPPER_THRESH is -999.9
131: -- PARSED VALUE=|MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872|
131: -- PARSED_VALUE=|-1000.000000|
131: Not an error
387/571 Test #131: plm-add-a-check .......................   Passed    0.03 sec
test 134
        Start 134: plm-add-b-check

134: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-500.1" "-DUPPER_THRESH=-499.9" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
134: Test timeout computed to be: 1500
134: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b-stats.stdout.txt
134: -- REGEX is AVE *([-0-9.]*)
134: -- LOWER_THRESH is -500.1
134: -- UPPER_THRESH is -499.9
134: -- PARSED VALUE=|MIN -500.000000 AVE -500.000000 MAX -500.000000 NONZERO 54872 NUMVOX 54872|
134: -- PARSED_VALUE=|-500.000000|
134: Not an error
388/571 Test #134: plm-add-b-check .......................   Passed    0.03 sec
test 137
        Start 137: plm-add-vf-a-check

137: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=20.000" "-DUPPER_THRESH=20.000" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
137: Test timeout computed to be: 1500
137: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a-stats.stdout.txt
137: -- REGEX is Mean: *([-0-9.]*)
137: -- LOWER_THRESH is 20.000
137: -- UPPER_THRESH is 20.000
137: -- PARSED VALUE=|Mean:                20.000      0.000      0.000|
137: -- PARSED_VALUE=|20.000|
137: Not an error
389/571 Test #137: plm-add-vf-a-check ....................   Passed    0.03 sec
test 140
        Start 140: plm-add-vf-b-check

140: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.000" "-DUPPER_THRESH=5.000" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
140: Test timeout computed to be: 1500
140: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b-stats.stdout.txt
140: -- REGEX is Mean: *([-0-9.]*)
140: -- LOWER_THRESH is 5.000
140: -- UPPER_THRESH is 5.000
140: -- PARSED VALUE=|Mean:                 5.000      5.000      0.000|
140: -- PARSED_VALUE=|5.000|
140: Not an error
390/571 Test #140: plm-add-vf-b-check ....................   Passed    0.02 sec
test 143
        Start 143: plm-adjust-a-check

143: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
143: Test timeout computed to be: 1500
143: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a-stats.stdout.txt
143: -- REGEX is AVE *([-0-9.]*)
143: -- LOWER_THRESH is -819.55
143: -- UPPER_THRESH is -819.54
143: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872|
143: -- PARSED_VALUE=|-819.546265|
143: Not an error
391/571 Test #143: plm-adjust-a-check ....................   Passed    0.03 sec
test 146
        Start 146: plm-adjust-b-check

146: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
146: Test timeout computed to be: 1500
146: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b-stats.stdout.txt
146: -- REGEX is AVE *([-0-9.]*)
146: -- LOWER_THRESH is -819.55
146: -- UPPER_THRESH is -819.54
146: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872|
146: -- PARSED_VALUE=|-819.546265|
146: Not an error
392/571 Test #146: plm-adjust-b-check ....................   Passed    0.02 sec
test 149
        Start 149: plm-adjust-c-check

149: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
149: Test timeout computed to be: 1500
149: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c-stats.stdout.txt
149: -- REGEX is AVE *([-0-9.]*)
149: -- LOWER_THRESH is -819.55
149: -- UPPER_THRESH is -819.54
149: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872|
149: -- PARSED_VALUE=|-819.546265|
149: Not an error
393/571 Test #149: plm-adjust-c-check ....................   Passed    0.04 sec
test 152
        Start 152: plm-adjust-d-check

152: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-782.97" "-DUPPER_THRESH=-782.96" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
152: Test timeout computed to be: 1500
152: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d-stats.stdout.txt
152: -- REGEX is AVE *([-0-9.]*)
152: -- LOWER_THRESH is -782.97
152: -- UPPER_THRESH is -782.96
152: -- PARSED VALUE=|MIN -800.000000 AVE -782.961060 MAX -600.000000 NONZERO 54872 NUMVOX 54872|
152: -- PARSED_VALUE=|-782.961060|
152: Not an error
394/571 Test #152: plm-adjust-d-check ....................   Passed    0.02 sec
test 155
        Start 155: plm-adjust-e-check

155: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1298.87" "-DUPPER_THRESH=-1298.86" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
155: Test timeout computed to be: 1500
155: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e-stats.stdout.txt
155: -- REGEX is AVE *([-0-9.]*)
155: -- LOWER_THRESH is -1298.87
155: -- UPPER_THRESH is -1298.86
155: -- PARSED VALUE=|MIN -1500.000000 AVE -1298.865601 MAX 987.531189 NONZERO 54872 NUMVOX 54872|
155: -- PARSED_VALUE=|-1298.865601|
155: Not an error
395/571 Test #155: plm-adjust-e-check ....................   Passed    0.03 sec
test 158
        Start 158: plm-adjust-f-check

158: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.0196" "-DUPPER_THRESH=-0.0195" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
158: Test timeout computed to be: 1500
158: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f-stats.stdout.txt
158: -- REGEX is AVE *([-0-9.]*)
158: -- LOWER_THRESH is -0.0196
158: -- UPPER_THRESH is -0.0195
158: -- PARSED VALUE=|MIN -0.107574 AVE -0.019504 MAX 0.207060 NONZERO 54872 NUMVOX 54872|
158: -- PARSED_VALUE=|-0.019504|
158: Not an error
396/571 Test #158: plm-adjust-f-check ....................   Passed    0.03 sec
test 161
        Start 161: plm-adjust-g-check

161: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.0001" "-DUPPER_THRESH=0.0001" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
161: Test timeout computed to be: 1500
161: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g-stats.stdout.txt
161: -- REGEX is AVE *([-0-9.]*)
161: -- LOWER_THRESH is -0.0001
161: -- UPPER_THRESH is 0.0001
161: -- PARSED VALUE=|MIN -0.025301 AVE -0.000000 MAX 0.287606 NONZERO 54872 NUMVOX 54872|
161: -- PARSED_VALUE=|-0.000000|
161: Not an error
397/571 Test #161: plm-adjust-g-check ....................   Passed    0.03 sec
test 164
        Start 164: plm-adjust-h-check

164: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.2481" "-DUPPER_THRESH=-0.248" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
164: Test timeout computed to be: 1500
128: RETVAL: 0
128: STDOUT: Hello world
128: Gonna convert pointsets
128: Pointset:
128:              rect-2-0 -26.271700 -52.162899  46.052799
128:              rect-2-1  65.870201 -52.543598  46.053001
128:              rect-2-2  65.870201  52.543900  46.053001
128:              rect-2-3 -25.510201  53.686199  46.053001
128:              rect-2-4 -25.891001 -52.162899 -46.052502
128:              rect-2-5  66.631699 -53.305099 -46.053001
128:              rect-2-6  65.870201  53.305401 -46.053001
128:              rect-2-7 -25.129499  53.686199 -46.053001
128: Conversion complete.
128: -26.2717 -52.1629 46.0528
128: 65.8702 -52.5436 46.053
128: 65.8702 52.5439 46.053
128: -25.5102 53.6862 46.053
128: -25.891 -52.1629 -46.0525
128: 66.6317 -53.3051 -46.053
128: 65.8702 53.3054 -46.053
128: -25.1295 53.6862 -46.053
128: Setting landmarks to TPS
128: Computing matrix
128: Setting xform
128: Converting to VF
128: Warping...
128: landmark   0 err 0.796775 mm
128: landmark   1 err 0.857190 mm
128: landmark   2 err 0.875645 mm
128: landmark   3 err 0.888102 mm
128: landmark   4 err 0.831617 mm
128: landmark   5 err 0.807000 mm
128: landmark   6 err 1.057389 mm
128: landmark   7 err 1.167740 mm
128: landmark RMS err 0.918533 mm
128: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha
128: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha
128: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv
128: 
128: STDERR: 
164: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h-stats.stdout.txt
164: -- REGEX is AVE *([-0-9.]*)
164: -- LOWER_THRESH is -0.2481
164: -- UPPER_THRESH is -0.248
164: -- PARSED VALUE=|MIN -0.283680 AVE -0.248078 MAX 0.156631 NONZERO 54872 NUMVOX 54872|
164: -- PARSED_VALUE=|-0.248078|
164: Not an error
398/571 Test #164: plm-adjust-h-check ....................   Passed    0.03 sec
test 167
        Start 167: plm-adjust-i-check

167: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-921.5941" "-DUPPER_THRESH=-921.5940" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
167: Test timeout computed to be: 1500
167: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-stats.stdout.txt
167: -- REGEX is AVE *([-0-9.]*)
167: -- LOWER_THRESH is -921.5941
167: -- UPPER_THRESH is -921.5940
167: -- PARSED VALUE=|MIN -1000.000000 AVE -921.594055 MAX -4.987521 NONZERO 54872 NUMVOX 54872|
167: -- PARSED_VALUE=|-921.594055|
167: Not an error
399/571 Test #167: plm-adjust-i-check ....................   Passed    0.03 sec
test 170
        Start 170: plm-adjust-j-check

170: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-921.6276" "-DUPPER_THRESH=-921.6274" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
170: Test timeout computed to be: 1500
128: Not an error
400/571 Test #128: landmark-warp-d .......................   Passed    0.39 sec
test 173
        Start 173: plm-boundary-a-check

173: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1056" "-DUPPER_THRESH=1056" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
173: Test timeout computed to be: 1500
170: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-stats.stdout.txt
170: -- REGEX is AVE *([-0-9.]*)
170: -- LOWER_THRESH is -921.6276
170: -- UPPER_THRESH is -921.6274
170: -- PARSED VALUE=|MIN -1000.000000 AVE -921.627502 MAX -4.987521 NONZERO 54872 NUMVOX 54872|
170: -- PARSED_VALUE=|-921.627502|
170: Not an error
401/571 Test #170: plm-adjust-j-check ....................   Passed    0.03 sec
test 176
        Start 176: plm-boundary-b-check

176: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1056" "-DUPPER_THRESH=1056" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
176: Test timeout computed to be: 1500
173: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a-stats.stdout.txt
173: -- REGEX is NONZERO *([-0-9.]*)
173: -- LOWER_THRESH is 1056
173: -- UPPER_THRESH is 1056
173: -- PARSED VALUE=|MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000|
173: -- PARSED_VALUE=|1056|
173: Not an error
402/571 Test #173: plm-boundary-a-check ..................   Passed    0.03 sec
test 179
        Start 179: plm-boundary-c-check

179: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=840" "-DUPPER_THRESH=840" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
179: Test timeout computed to be: 1500
176: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b-stats.stdout.txt
176: -- REGEX is NONZERO *([-0-9.]*)
176: -- LOWER_THRESH is 1056
176: -- UPPER_THRESH is 1056
176: -- PARSED VALUE=|MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000|
176: -- PARSED_VALUE=|1056|
176: Not an error
403/571 Test #176: plm-boundary-b-check ..................   Passed    0.03 sec
test 182
        Start 182: plm-boundary-d-check

182: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=2.614" "-DUPPER_THRESH=2.615" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
182: Test timeout computed to be: 1500
179: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c-stats.stdout.txt
179: -- REGEX is NONZERO *([-0-9.]*)
179: -- LOWER_THRESH is 840
179: -- UPPER_THRESH is 840
179: -- PARSED VALUE=|MIN 0.000000 AVE 0.105000 MAX 1.000000 NONZERO 840 NUMVOX 8000|
179: -- PARSED_VALUE=|840|
179: Not an error
404/571 Test #179: plm-boundary-c-check ..................   Passed    0.03 sec
test 185
        Start 185: plm-boundary-e-check

185: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=2.141" "-DUPPER_THRESH=2.143" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
185: Test timeout computed to be: 1500
182: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d-stats.stdout.txt
182: -- REGEX is AVE *([-0-9.]*)
182: -- LOWER_THRESH is 2.614
182: -- UPPER_THRESH is 2.615
182: -- PARSED VALUE=|MIN 0.000000 AVE 2.614500 MAX 56.000000 NONZERO 1056 NUMVOX 8000|
182: -- PARSED_VALUE=|2.614500|
182: Not an error
405/571 Test #182: plm-boundary-d-check ..................   Passed    0.03 sec
test 188
        Start 188: plm-convert-dicom-a-check

188: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-stats.stdout.txt" "-DREGEX= 0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1648003" "-DUPPER_THRESH=1648003" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
188: Test timeout computed to be: 1500
185: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e-stats.stdout.txt
185: -- REGEX is AVE *([-0-9.]*)
185: -- LOWER_THRESH is 2.141
185: -- UPPER_THRESH is 2.143
185: -- PARSED VALUE=|MIN 0.000000 AVE 2.142000 MAX 56.000000 NONZERO 840 NUMVOX 8000|
185: -- PARSED_VALUE=|2.142000|
185: Not an error
406/571 Test #185: plm-boundary-e-check ..................   Passed    0.03 sec
test 191
        Start 191: plm-convert-dicom-b-check

191: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-stats.stdout.txt" "-DREGEX=Patient Position . (.*[^ ]) *$" "-DMATCH_STRING=FFS" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckString.cmake"
191: Test timeout computed to be: 1500
188: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-stats.stdout.txt
188: -- REGEX is  0 *NVOX *([-0-9.]*)
188: -- LOWER_THRESH is 1648003
188: -- UPPER_THRESH is 1648003
188: -- PARSED VALUE=|S    0  NVOX    1648003|
188: -- PARSED_VALUE=|1648003|
188: Not an error
407/571 Test #188: plm-convert-dicom-a-check .............   Passed    0.03 sec
test 194
        Start 194: plm-convert-dicom-c-check

194: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=280" "-DUPPER_THRESH=280" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
194: Test timeout computed to be: 1500
191: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-stats.stdout.txt
191: -- REGEX is Patient Position . (.*[^ ]) *$
191: -- MATCH_STRING is FFS
191: -- PARSED VALUE=|Patient Position = FFS |
191: -- PARSED_VALUE=|FFS|
191: -- LENGTH=3
191: -- |FFS|FFS|
191: Not an error
408/571 Test #191: plm-convert-dicom-b-check .............   Passed    0.03 sec
test 195
        Start 195: plm-convert-dicom-d

195: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-d.nrrd" "-DEXPECTED_ERRNO=1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
195: Test timeout computed to be: 1500
194: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-stats.stdout.txt
194: -- REGEX is NONZERO *([-0-9.]*)
194: -- LOWER_THRESH is 280
194: -- UPPER_THRESH is 280
194: -- PARSED VALUE=|MIN 0.000000 AVE 0.000280 MAX 1.000000 NONZERO 280 NUMVOX 1000000|
194: -- PARSED_VALUE=|280|
194: Not an error
409/571 Test #194: plm-convert-dicom-c-check .............   Passed    0.03 sec
test 196
        Start 196: plm-convert-dicom-e

196: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-e" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/tmp/;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-e.nrrd" "-DEXPECTED_ERRNO=1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
196: Test timeout computed to be: 1500
195: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
195: PARMS is convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-d.nrrd
195: EXPECTED_ERRNO is 1
196: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
196: PARMS is convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/tmp/;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-e.nrrd
196: EXPECTED_ERRNO is 1
195: RETVAL: 1
195: STDOUT: Could not open input file /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/ for read
195: 
195: STDERR: 
195: Not an error
410/571 Test #195: plm-convert-dicom-d ...................   Passed    0.30 sec
test 197
        Start 197: plm-convert-dicom-f

197: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-f" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-f-dicom;--referenced-ct;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
197: Test timeout computed to be: 1500
196: RETVAL: 1
196: STDOUT: Sorry, could not load input as any known type.
196: 
196: STDERR: 
197: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
197: PARMS is convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-f-dicom;--referenced-ct;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom
197: EXPECTED_ERRNO is 
196: Not an error
411/571 Test #196: plm-convert-dicom-e ...................   Passed    0.38 sec
test 200
        Start 200: plm-convert-dicom-donut-a-check

200: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=2623" "-DUPPER_THRESH=2623" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
200: Test timeout computed to be: 1500
200: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-stats.stdout.txt
200: -- REGEX is S *0 *NVOX *([-0-9.]*)
200: -- LOWER_THRESH is 2623
200: -- UPPER_THRESH is 2623
200: -- PARSED VALUE=|S    0  NVOX       2623|
200: -- PARSED_VALUE=|2623|
200: Not an error
412/571 Test #200: plm-convert-dicom-donut-a-check .......   Passed    0.03 sec
test 203
        Start 203: plm-convert-dicom-donut-b-check

203: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1924" "-DUPPER_THRESH=1924" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
203: Test timeout computed to be: 1500
203: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-stats.stdout.txt
203: -- REGEX is S *0 *NVOX *([-0-9.]*)
203: -- LOWER_THRESH is 1924
203: -- UPPER_THRESH is 1924
203: -- PARSED VALUE=|S    0  NVOX       1924|
203: -- PARSED_VALUE=|1924|
203: Not an error
413/571 Test #203: plm-convert-dicom-donut-b-check .......   Passed    0.03 sec
test 204
        Start 204: plm-convert-dicom-donut-c

204: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--input-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--input-ss-list;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--filenames-without-uids;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-c" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
204: Test timeout computed to be: 1500
204: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
204: PARMS is convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--input-ss-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--input-ss-list;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--filenames-without-uids;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-c
204: EXPECTED_ERRNO is 
197: RETVAL: 0
197: STDOUT: Loading RDD
197: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3359049.1640785961.22482RTDOSE
197: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3359049.1640785961.22482RTSTRUCT
197: Found DCM_ReferencedFrameOfReferenceSequence!
197: Found DCM_RTReferencedStudySequence!
197: Trying to load rt structure set.
197: Adding structure (1), Foreground
197: Structure 1 has color 255\0\0
197: Trying to load rt dose.
197: Load: DoseGridScaling = 0.000000
197: RTDOSE: dim = 38 38 38
197:   ipp = -243.421005 -243.421005 -243.421005
197:   spc = 13.157900 13.157900 13.157900
197:   dc  = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000
197: Bits_alloc: 32
197: Bits_stored: 32
197: High_bit: 31
197: Pixel_rep: 0
197: rc = 1, length = 109744, npix = 54872
197: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3359049.1640785961.22482RTDOSE
197: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3359049.1640785961.22482RTSTRUCT
197: Found DCM_ReferencedFrameOfReferenceSequence!
197: Found DCM_RTReferencedStudySequence!
197: Trying to load rt structure set.
197: Adding structure (1), Foreground
197: Structure 1 has color 255\0\0
197: Trying to load rt dose.
197: Load: DoseGridScaling = 0.000000
197: RTDOSE: dim = 38 38 38
197:   ipp = -243.421005 -243.421005 -243.421005
197:   spc = 13.157900 13.157900 13.157900
197:   dc  = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000
197: Bits_alloc: 32
197: Bits_stored: 32
197: High_bit: 31
197: Pixel_rep: 0
197: rc = 1, length = 109744, npix = 54872
197: Loading RDD complete
197: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3357517.1640785960.95922RTSTRUCT
197: Found DCM_ReferencedFrameOfReferenceSequence!
197: Found DCM_RTReferencedStudySequence!
197: Trying to load rt structure set.
197: Adding structure (1), Foreground
197: Structure 1 has color 255\0\0
197: Setting PIH from RDD
197: PIH is:
197: Origin = -243.4211 -243.4211 -243.4211
197: Size = 38 38 38
197: Spacing = 13.1579 13.1579 13.1579
197: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
197: Rt_study_warp: Convert ss_img to cxt.
197: Rt_study_warp: Apply dicom_dir.
197: Rt_study_warp: Set geometry from PIH.
197: Rt_study_warp: Set rasterization geometry.
197: rast_dim = 512 512 7
197: rast_offset = -55.2632 -55.2632 -46.0526
197: rast_spacing = 0.215872 0.215872 13.1579
197: Rt_study_warp: warp and save ss.
197: Warp_and_save_ss: save_ss_img
197: Rt_study_warp: Save dicom.
197: Keyholizing structure 0.
197: Finished!
197: 
197: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
197: 
197: Not an error
414/571 Test #197: plm-convert-dicom-f ...................   Passed    0.38 sec
test 207
        Start 207: plm-convert-cxt-check

207: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1648003" "-DUPPER_THRESH=1648003" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
207: Test timeout computed to be: 1500
207: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt-stats.stdout.txt
207: -- REGEX is S *0 *NVOX *([-0-9.]*)
207: -- LOWER_THRESH is 1648003
207: -- UPPER_THRESH is 1648003
207: -- PARSED VALUE=|S    0  NVOX    1648003|
207: -- PARSED_VALUE=|1648003|
207: Not an error
415/571 Test #207: plm-convert-cxt-check .................   Passed    0.02 sec
test 211
        Start 211: plm-convert-dose-scale-check

211: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=77.699" "-DUPPER_THRESH=77.7" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
211: Test timeout computed to be: 1500
211: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale-stats.stdout.txt
211: -- REGEX is MAX *([-0-9.]*)
211: -- LOWER_THRESH is 77.699
211: -- UPPER_THRESH is 77.7
211: -- PARSED VALUE=|MIN 0.000000 AVE 0.294533 MAX 77.699997 NONZERO 208 NUMVOX 54872|
211: -- PARSED_VALUE=|77.699997|
211: Not an error
416/571 Test #211: plm-convert-dose-scale-check ..........   Passed    0.02 sec
test 214
        Start 214: plm-crop-a-check-1

214: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=11 16 3" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckString.cmake"
214: Test timeout computed to be: 1500
214: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a-stats.stdout.txt
214: -- REGEX is ^Size = (.*)$
214: -- MATCH_STRING is 11 16 3
214: -- PARSED VALUE=|Size = 11 16 3|
214: -- PARSED_VALUE=|11 16 3|
214: -- LENGTH=7
214: -- |11 16 3|11 16 3|
214: Not an error
417/571 Test #214: plm-crop-a-check-1 ....................   Passed    0.03 sec
test 217
        Start 217: plm-crop-b-check-1

217: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=19 11 4" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckString.cmake"
217: Test timeout computed to be: 1500
217: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b-stats.stdout.txt
217: -- REGEX is ^Size = (.*)$
217: -- MATCH_STRING is 19 11 4
217: -- PARSED VALUE=|Size = 19 11 4|
217: -- PARSED_VALUE=|19 11 4|
217: -- LENGTH=7
217: -- |19 11 4|19 11 4|
217: Not an error
418/571 Test #217: plm-crop-b-check-1 ....................   Passed    0.03 sec
test 220
        Start 220: plm-crop-c-check-1

220: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=15 15 15" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckString.cmake"
220: Test timeout computed to be: 1500
204: RETVAL: 0
204: STDOUT: Trying to load ss_list: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt
204: Setting PIH from M_IMG
204: PIH is:
204: Origin = -25.0000 -25.0000 -25.0000
204: Size = 38 38 38
204: Spacing = 1.3158 1.3158 1.3158
204: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
204: Rt_study_warp: Convert ss_img to cxt.
204: Doing extraction
204: Rt_study_warp: Apply dicom_dir.
204: Rt_study_warp: Set geometry from PIH.
204: Rt_study_warp: Set rasterization geometry.
204: rast_dim = 512 512 14
204: rast_offset = -10.3618 -10.3618 -9.21053
204: rast_spacing = 0.0404759 0.0404759 1.31579
204: Rt_study_warp: warp and save ss.
204: Warp_and_save_ss: save_ss_img
204: Rt_study_warp: Save dicom.
204: Keyholizing structure 0.
204: Finished!
204: 
204: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
204: 
220: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c-stats.stdout.txt
220: -- REGEX is ^Size = (.*)$
220: -- MATCH_STRING is 15 15 15
220: -- PARSED VALUE=|Size = 15 15 15|
220: -- PARSED_VALUE=|15 15 15|
220: -- LENGTH=8
220: -- |15 15 15|15 15 15|
220: Not an error
419/571 Test #220: plm-crop-c-check-1 ....................   Passed    0.03 sec
test 222
        Start 222: plm-dice-a-check-1

222: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-a.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.799" "-DUPPER_THRESH=0.801" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
222: Test timeout computed to be: 1500
222: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-a.stdout.txt
222: -- REGEX is ^DICE: *([-0-9.]*)
222: -- LOWER_THRESH is 0.799
222: -- UPPER_THRESH is 0.801
222: -- PARSED VALUE=|DICE:      0.800000|
222: -- PARSED_VALUE=|0.800000|
222: Not an error
420/571 Test #222: plm-dice-a-check-1 ....................   Passed    0.02 sec
test 224
        Start 224: plm-dice-b-check-1

224: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-b.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.000" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
224: Test timeout computed to be: 1500
224: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-b.stdout.txt
224: -- REGEX is ^DICE: *([-0-9.]*)
224: -- LOWER_THRESH is 0.999
224: -- UPPER_THRESH is 1.000
224: -- PARSED VALUE=|DICE:      1.000000|
224: -- PARSED_VALUE=|1.000000|
224: Not an error
421/571 Test #224: plm-dice-b-check-1 ....................   Passed    0.02 sec
test 226
        Start 226: plm-dice-c-check-1

226: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=26.31" "-DUPPER_THRESH=26.32" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
226: Test timeout computed to be: 1500
204: Not an error
422/571 Test #204: plm-convert-dicom-donut-c .............   Passed    0.42 sec
test 227
        Start 227: plm-dice-c-check-2

227: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Avg average Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=3.40" "-DUPPER_THRESH=3.41" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
227: Test timeout computed to be: 1500
226: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt
226: -- REGEX is ^Hausdorff distance = *([-0-9.]*)
226: -- LOWER_THRESH is 26.31
226: -- UPPER_THRESH is 26.32
226: -- PARSED VALUE=|Hausdorff distance = 26.315790|
226: -- PARSED_VALUE=|26.315790|
226: Not an error
423/571 Test #226: plm-dice-c-check-1 ....................   Passed    0.03 sec
test 228
        Start 228: plm-dice-c-check-3

228: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=7.11" "-DUPPER_THRESH=7.12" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
228: Test timeout computed to be: 1500
227: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt
227: -- REGEX is ^Avg average Hausdorff distance = *([-0-9.]*)
227: -- LOWER_THRESH is 3.40
227: -- UPPER_THRESH is 3.41
227: -- PARSED VALUE=|Avg average Hausdorff distance = 3.406955|
227: -- PARSED_VALUE=|3.406955|
227: Not an error
424/571 Test #227: plm-dice-c-check-2 ....................   Passed    0.03 sec
test 229
        Start 229: plm-dice-c-check-4

229: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Max average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=8.53" "-DUPPER_THRESH=8.54" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
229: Test timeout computed to be: 1500
228: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt
228: -- REGEX is ^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*)
228: -- LOWER_THRESH is 7.11
228: -- UPPER_THRESH is 7.12
228: -- PARSED VALUE=|Avg average Hausdorff distance (boundary) = 7.115030|
228: -- PARSED_VALUE=|7.115030|
228: Not an error
425/571 Test #228: plm-dice-c-check-3 ....................   Passed    0.02 sec
test 230
        Start 230: plm-dice-c-check-5

230: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Percent .* \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=26.31" "-DUPPER_THRESH=26.32" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
230: Test timeout computed to be: 1500
229: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt
229: -- REGEX is ^Max average Hausdorff distance \(boundary\) = *([-0-9.]*)
229: -- LOWER_THRESH is 8.53
229: -- UPPER_THRESH is 8.54
229: -- PARSED VALUE=|Max average Hausdorff distance (boundary) = 8.534851|
229: -- PARSED_VALUE=|8.534851|
229: Not an error
426/571 Test #229: plm-dice-c-check-4 ....................   Passed    0.03 sec
test 232
        Start 232: plm-dice-d-check-1

232: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=45.575" "-DUPPER_THRESH=45.585" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
232: Test timeout computed to be: 1500
230: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt
230: -- REGEX is ^Percent .* \(boundary\) = *([-0-9.]*)
230: -- LOWER_THRESH is 26.31
230: -- UPPER_THRESH is 26.32
230: -- PARSED VALUE=|Percent (0.95) Hausdorff distance (boundary) = 26.315790|
230: -- PARSED_VALUE=|26.315790|
230: Not an error
427/571 Test #230: plm-dice-c-check-5 ....................   Passed    0.03 sec
test 233
        Start 233: plm-dice-d-check-2

233: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Avg average Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=7.07" "-DUPPER_THRESH=7.08" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
233: Test timeout computed to be: 1500
232: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt
232: -- REGEX is ^Hausdorff distance = *([-0-9.]*)
232: -- LOWER_THRESH is 45.575
232: -- UPPER_THRESH is 45.585
232: -- PARSED VALUE=|Hausdorff distance = 45.580288|
232: -- PARSED_VALUE=|45.580288|
232: Not an error
428/571 Test #232: plm-dice-d-check-1 ....................   Passed    0.03 sec
test 234
        Start 234: plm-dice-d-check-3

234: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=14.89" "-DUPPER_THRESH=14.90" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
234: Test timeout computed to be: 1500
233: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt
233: -- REGEX is ^Avg average Hausdorff distance = *([-0-9.]*)
233: -- LOWER_THRESH is 7.07
233: -- UPPER_THRESH is 7.08
233: -- PARSED VALUE=|Avg average Hausdorff distance = 7.072703|
233: -- PARSED_VALUE=|7.072703|
233: Not an error
429/571 Test #233: plm-dice-d-check-2 ....................   Passed    0.02 sec
test 235
        Start 235: plm-dice-d-check-4

235: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Max average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=18.38" "-DUPPER_THRESH=18.39" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
235: Test timeout computed to be: 1500
234: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt
234: -- REGEX is ^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*)
234: -- LOWER_THRESH is 14.89
234: -- UPPER_THRESH is 14.90
234: -- PARSED VALUE=|Avg average Hausdorff distance (boundary) = 14.894061|
234: -- PARSED_VALUE=|14.894061|
234: Not an error
430/571 Test #234: plm-dice-d-check-3 ....................   Passed    0.03 sec
test 236
        Start 236: plm-dice-d-check-5

236: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Percent .* \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=32.89" "-DUPPER_THRESH=32.90" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
236: Test timeout computed to be: 1500
235: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt
235: -- REGEX is ^Max average Hausdorff distance \(boundary\) = *([-0-9.]*)
235: -- LOWER_THRESH is 18.38
235: -- UPPER_THRESH is 18.39
235: -- PARSED VALUE=|Max average Hausdorff distance (boundary) = 18.384613|
235: -- PARSED_VALUE=|18.384613|
235: Not an error
431/571 Test #235: plm-dice-d-check-4 ....................   Passed    0.02 sec
test 238
        Start 238: plm-dice-e-check-1

238: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.96550" "-DUPPER_THRESH=0.96554" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
238: Test timeout computed to be: 1500
238: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt
238: -- REGEX is ^DICE: *([-0-9.]*)
238: -- LOWER_THRESH is 0.96550
238: -- UPPER_THRESH is 0.96554
238: -- PARSED VALUE=|DICE:      0.965517|
238: -- PARSED_VALUE=|0.965517|
236: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt
236: -- REGEX is ^Percent .* \(boundary\) = *([-0-9.]*)
236: -- LOWER_THRESH is 32.89
236: -- UPPER_THRESH is 32.90
236: -- PARSED VALUE=|Percent (0.95) Hausdorff distance (boundary) = 32.894737|
238: Not an error
236: -- PARSED_VALUE=|32.894737|
236: Not an error
432/571 Test #238: plm-dice-e-check-1 ....................   Passed    0.02 sec
test 239
        Start 239: plm-dice-e-check-2

239: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=4" "-DUPPER_THRESH=4" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
239: Test timeout computed to be: 1500
433/571 Test #236: plm-dice-d-check-5 ....................   Passed    0.03 sec
test 241
        Start 241: plm-dice-f-check-1

241: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=1" "-DUPPER_THRESH=1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
241: Test timeout computed to be: 1500
241: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt
241: -- REGEX is ^DICE: *([-0-9.]*)
241: -- LOWER_THRESH is 1
241: -- UPPER_THRESH is 1
241: -- PARSED VALUE=|DICE:      1.000000|
241: -- PARSED_VALUE=|1.000000|
241: Not an error
239: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt
239: -- REGEX is ^Hausdorff distance = *([-0-9.]*)
239: -- LOWER_THRESH is 4
239: -- UPPER_THRESH is 4
239: -- PARSED VALUE=|Hausdorff distance = 4.000000|
239: -- PARSED_VALUE=|4.000000|
239: Not an error
434/571 Test #241: plm-dice-f-check-1 ....................   Passed    0.02 sec
test 242
        Start 242: plm-dice-f-check-2

242: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=0" "-DUPPER_THRESH=0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
242: Test timeout computed to be: 1500
435/571 Test #239: plm-dice-e-check-2 ....................   Passed    0.03 sec
test 243
        Start 243: plm-dmap-a

243: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;maurer;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
243: Test timeout computed to be: 1500
242: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt
242: -- REGEX is ^Hausdorff distance = *([-0-9.]*)
242: -- LOWER_THRESH is 0
242: -- UPPER_THRESH is 0
242: -- PARSED VALUE=|Hausdorff distance = 0.000000|
242: -- PARSED_VALUE=|0.000000|
242: Not an error
436/571 Test #242: plm-dice-f-check-2 ....................   Passed    0.02 sec
test 245
        Start 245: plm-dmap-c

245: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;song_maurer;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
245: Test timeout computed to be: 1500
243: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
243: PARMS is dmap;--algorithm;maurer;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha
243: EXPECTED_ERRNO is 
245: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
245: PARMS is dmap;--algorithm;song_maurer;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha
245: EXPECTED_ERRNO is 
243: RETVAL: 0
243: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha
243: 
243: STDERR: 
243: Not an error
437/571 Test #243: plm-dmap-a ............................   Passed    0.29 sec
test 247
        Start 247: plm-dvh-a-check-1

247: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv" "-DREGEX=^15,([-0-9.]*)," "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
247: Test timeout computed to be: 1500
247: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv
247: -- REGEX is ^15,([-0-9.]*),
247: -- LOWER_THRESH is 0.999
247: -- UPPER_THRESH is 1.0
247: -- PARSED VALUE=|15,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|
247: -- PARSED_VALUE=|1|
247: Not an error
438/571 Test #247: plm-dvh-a-check-1 .....................   Passed    0.02 sec
test 248
        Start 248: plm-dvh-a-check-2

248: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv" "-DREGEX=^15.5,([-0-9.]*)," "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.001" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
248: Test timeout computed to be: 1500
248: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv
248: -- REGEX is ^15.5,([-0-9.]*),
248: -- LOWER_THRESH is 0.0
248: -- UPPER_THRESH is 0.001
248: -- PARSED VALUE=|15.5,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|
248: -- PARSED_VALUE=|0|
248: Not an error
439/571 Test #248: plm-dvh-a-check-2 .....................   Passed    0.10 sec
test 250
        Start 250: plm-dvh-b-check-1

250: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv" "-DREGEX=^15,([-0-9.]*)" "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
250: Test timeout computed to be: 1500
245: RETVAL: 0
245: STDOUT: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha
245: 
245: STDERR: 
250: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv
250: -- REGEX is ^15,([-0-9.]*)
250: -- LOWER_THRESH is 0.999
250: -- UPPER_THRESH is 1.0
250: -- PARSED VALUE=|15,1|
250: -- PARSED_VALUE=|1|
250: Not an error
440/571 Test #250: plm-dvh-b-check-1 .....................   Passed    0.04 sec
test 251
        Start 251: plm-dvh-b-check-2

251: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv" "-DREGEX=^15.5,([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.001" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
251: Test timeout computed to be: 1500
251: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv
251: -- REGEX is ^15.5,([-0-9.]*)
251: -- LOWER_THRESH is 0.0
251: -- UPPER_THRESH is 0.001
251: -- PARSED VALUE=|15.5,0|
251: -- PARSED_VALUE=|0|
251: Not an error
441/571 Test #251: plm-dvh-b-check-2 .....................   Passed    0.03 sec
test 254
        Start 254: plm-fill-a-check

254: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.1" "-DUPPER_THRESH=+0.1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
254: Test timeout computed to be: 1500
245: Not an error
442/571 Test #245: plm-dmap-c ............................   Passed    0.48 sec
test 257
        Start 257: plm-mask-a-check

257: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1000.1" "-DUPPER_THRESH=-999.9" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
257: Test timeout computed to be: 1500
254: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a-stats.stdout.txt
254: -- REGEX is AVE *([-0-9.]*)
254: -- LOWER_THRESH is -0.1
254: -- UPPER_THRESH is +0.1
254: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872|
254: -- PARSED_VALUE=|0.000000|
254: Not an error
443/571 Test #254: plm-fill-a-check ......................   Passed    0.03 sec
test 260
        Start 260: plm-gamma-a-check

260: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.023" "-DUPPER_THRESH=0.024" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
260: Test timeout computed to be: 1500
257: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a-stats.stdout.txt
257: -- REGEX is AVE *([-0-9.]*)
257: -- LOWER_THRESH is -1000.1
257: -- UPPER_THRESH is -999.9
257: -- PARSED VALUE=|MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872|
257: -- PARSED_VALUE=|-1000.000000|
257: Not an error
444/571 Test #257: plm-mask-a-check ......................   Passed    0.03 sec
test 263
        Start 263: plm-gamma-b-check

263: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.245" "-DUPPER_THRESH=0.255" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
263: Test timeout computed to be: 1500
260: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a-stats.stdout.txt
260: -- REGEX is AVE *([-0-9.]*)
260: -- LOWER_THRESH is 0.023
260: -- UPPER_THRESH is 0.024
260: -- PARSED VALUE=|MIN 0.000000 AVE 0.023500 MAX 0.666667 NONZERO 400 NUMVOX 8000|
260: -- PARSED_VALUE=|0.023500|
260: Not an error
445/571 Test #260: plm-gamma-a-check .....................   Passed    0.03 sec
test 265
        Start 265: plm-gamma-c-check

265: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.stdout.txt" "-DREGEX=Pass rate = *([-0-9.]*)" "-DLOWER_THRESH=90.6" "-DUPPER_THRESH=90.8" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
265: Test timeout computed to be: 1500
263: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b-stats.stdout.txt
263: -- REGEX is AVE *([-0-9.]*)
263: -- LOWER_THRESH is 0.245
263: -- UPPER_THRESH is 0.255
263: -- PARSED VALUE=|MIN 0.000000 AVE 0.250000 MAX 2.000000 NONZERO 1000 NUMVOX 8000|
263: -- PARSED_VALUE=|0.250000|
263: Not an error
446/571 Test #263: plm-gamma-b-check .....................   Passed    0.02 sec
test 267
        Start 267: plm-gamma-d-check

267: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.stdout.txt" "-DREGEX=Pass rate = *([-0-9.]*)" "-DLOWER_THRESH=89.9" "-DUPPER_THRESH=90.1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
267: Test timeout computed to be: 1500
265: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.stdout.txt
265: -- REGEX is Pass rate = *([-0-9.]*)
265: -- LOWER_THRESH is 90.6
265: -- UPPER_THRESH is 90.8
265: -- PARSED VALUE=|Pass rate = 90.719998 %|
265: -- PARSED_VALUE=|90.719998|
265: Not an error
447/571 Test #265: plm-gamma-c-check .....................   Passed    0.03 sec
test 270
        Start 270: plm-maximum-a-check

270: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
270: Test timeout computed to be: 1500
267: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.stdout.txt
267: -- REGEX is Pass rate = *([-0-9.]*)
267: -- LOWER_THRESH is 89.9
267: -- UPPER_THRESH is 90.1
267: -- PARSED VALUE=|Pass rate = 89.999998 %|
267: -- PARSED_VALUE=|89.999998|
267: Not an error
448/571 Test #267: plm-gamma-d-check .....................   Passed    0.03 sec
test 273
        Start 273: plm-multiply-a-check

273: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
273: Test timeout computed to be: 1500
270: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a-stats.stdout.txt
270: -- REGEX is AVE *([-0-9.]*)
270: -- LOWER_THRESH is 0.0
270: -- UPPER_THRESH is 0.0
270: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872|
270: -- PARSED_VALUE=|0.000000|
270: Not an error
449/571 Test #270: plm-maximum-a-check ...................   Passed    0.03 sec
test 276
        Start 276: plm-multiply-vf-a-check

276: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=100.000" "-DUPPER_THRESH=100.000" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
276: Test timeout computed to be: 1500
273: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a-stats.stdout.txt
273: -- REGEX is AVE *([-0-9.]*)
273: -- LOWER_THRESH is 0.0
273: -- UPPER_THRESH is 0.0
273: -- PARSED VALUE=|MIN -0.000000 AVE 0.000000 MAX -0.000000 NONZERO 0 NUMVOX 54872|
273: -- PARSED_VALUE=|0.000000|
273: Not an error
450/571 Test #273: plm-multiply-a-check ..................   Passed    0.03 sec
test 277
        Start 277: plm-usage

277: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-usage" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
277: Test timeout computed to be: 1500
277: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
277: PARMS is 
277: EXPECTED_ERRNO is 
276: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a-stats.stdout.txt
276: -- REGEX is Mean: *([-0-9.]*)
276: -- LOWER_THRESH is 100.000
276: -- UPPER_THRESH is 100.000
276: -- PARSED VALUE=|Mean:               100.000    100.000    100.000|
276: -- PARSED_VALUE=|100.000|
276: Not an error
451/571 Test #276: plm-multiply-vf-a-check ...............   Passed    0.04 sec
test 280
        Start 280: plm-reg-align-center-check

280: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-stats.stdout.txt" "-DREGEX=MAE *([-0-9.]*)" "-DLOWER_THRESH=-0.005" "-DUPPER_THRESH=0.005" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
280: Test timeout computed to be: 1500
280: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-stats.stdout.txt
280: -- REGEX is MAE *([-0-9.]*)
280: -- LOWER_THRESH is -0.005
280: -- UPPER_THRESH is 0.005
280: -- PARSED VALUE=|MAE 0.000002 MSE 0.000000|
280: -- PARSED_VALUE=|0.000002|
280: Not an error
452/571 Test #280: plm-reg-align-center-check ............   Passed    0.03 sec
test 283
        Start 283: plm-reg-itk-translation-check

283: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-677.6" "-DUPPER_THRESH=-677.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
283: Test timeout computed to be: 1500
283: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-stats.stdout.txt
283: -- REGEX is AVE *([-0-9.]*)
283: -- LOWER_THRESH is -677.6
283: -- UPPER_THRESH is -677.5
283: -- PARSED VALUE=|MIN -999.914246 AVE -677.557922 MAX 0.000000 NONZERO 43320 NUMVOX 54872|
283: -- PARSED_VALUE=|-677.557922|
283: Not an error
453/571 Test #283: plm-reg-itk-translation-check .........   Passed    0.03 sec
test 286
        Start 286: plm-reg-itk-rigid-a-check-1

286: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-939.3" "-DUPPER_THRESH=-939.1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
286: Test timeout computed to be: 1500
286: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-1.stdout.txt
286: -- REGEX is AVE *([-0-9.]*)
286: -- LOWER_THRESH is -939.3
286: -- UPPER_THRESH is -939.1
286: -- PARSED VALUE=|MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872|
286: -- PARSED_VALUE=|-939.203979|
286: Not an error
454/571 Test #286: plm-reg-itk-rigid-a-check-1 ...........   Passed    0.03 sec
test 288
        Start 288: plm-reg-itk-rigid-a-check-2

288: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-939.3" "-DUPPER_THRESH=-939.1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
288: Test timeout computed to be: 1500
288: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-2.stdout.txt
288: -- REGEX is AVE *([-0-9.]*)
288: -- LOWER_THRESH is -939.3
288: -- UPPER_THRESH is -939.1
288: -- PARSED VALUE=|MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872|
288: -- PARSED_VALUE=|-939.203979|
288: Not an error
455/571 Test #288: plm-reg-itk-rigid-a-check-2 ...........   Passed    0.03 sec
test 291
        Start 291: plm-reg-itk-similarity-check-1

291: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-981.3" "-DUPPER_THRESH=-981.1" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
291: Test timeout computed to be: 1500
291: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-1.stdout.txt
291: -- REGEX is AVE *([-0-9.]*)
291: -- LOWER_THRESH is -981.3
291: -- UPPER_THRESH is -981.1
291: -- PARSED VALUE=|MIN -1000.000000 AVE -981.187012 MAX 0.000000 NONZERO 54152 NUMVOX 54872|
291: -- PARSED_VALUE=|-981.187012|
291: Not an error
456/571 Test #291: plm-reg-itk-similarity-check-1 ........   Passed    0.03 sec
test 293
        Start 293: plm-reg-itk-similarity-check-2

293: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-940.8" "-DUPPER_THRESH=-940.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
293: Test timeout computed to be: 1500
277: RETVAL: 0
277: STDOUT: plastimatch version 1.9.3
277: Usage: plastimatch command [options]
277: Commands:
277:   add           adjust        average       bbox          boundary    
277:   crop          compare       compose       convert       dice        
277:   diff          dmap          dose          drr           dvh         
277:   fdk           fill          filter        gamma         header      
277:   intersect     jacobian      lm-warp       mabs          mask        
277:   maximum       ml-convert    multiply      probe         register    
277:   resample      scale         segment       sift          stats       
277:   synth         synth-vf      threshold     thumbnail     union       
277:   warp          wed           xf-convert    xf-invert   
277: 
277: For detailed usage of a specific command, type:
277:   plastimatch command
277: 
277: STDERR: 
293: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-2.stdout.txt
293: -- REGEX is AVE *([-0-9.]*)
293: -- LOWER_THRESH is -940.8
293: -- UPPER_THRESH is -940.5
293: -- PARSED VALUE=|MIN -1000.000000 AVE -940.684265 MAX 0.000000 NONZERO 52716 NUMVOX 54872|
293: -- PARSED_VALUE=|-940.684265|
293: Not an error
457/571 Test #293: plm-reg-itk-similarity-check-2 ........   Passed    0.03 sec
test 296
        Start 296: plm-reg-itk-bspline-check-1

296: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-764.0" "-DUPPER_THRESH=-763.6" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
296: Test timeout computed to be: 1500
296: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-stats-1.stdout.txt
296: -- REGEX is AVE *([-0-9.]*)
296: -- LOWER_THRESH is -764.0
296: -- UPPER_THRESH is -763.6
296: -- PARSED VALUE=|MIN -999.992249 AVE -763.817810 MAX 0.000000 NONZERO 48346 NUMVOX 54872|
296: -- PARSED_VALUE=|-763.817810|
296: Not an error
458/571 Test #296: plm-reg-itk-bspline-check-1 ...........   Passed    0.03 sec
test 298
        Start 298: plm-reg-itk-demons-check-1

298: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=31.85" "-DUPPER_THRESH=34.95" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
298: Test timeout computed to be: 1500
298: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.stdout.txt
298: -- REGEX is VF_AVG +[^ ] +([-0-9.]*)
298: -- LOWER_THRESH is 31.85
298: -- UPPER_THRESH is 34.95
298: -- PARSED VALUE=|VF_MAX = 97.6986   VF_AVG = 31.9237|
298: -- PARSED_VALUE=|31.9237|
298: Not an error
459/571 Test #298: plm-reg-itk-demons-check-1 ............   Passed    0.03 sec
test 300
        Start 300: plm-reg-itk-demons-check-2

300: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-755.3" "-DUPPER_THRESH=-754.6" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
300: Test timeout computed to be: 1500
569: RETVAL: 0
569: STDOUT: Skin file defined.  Modifying input ct...
569: FPD = 320.500029, BPD = 821.195355
569: 100 100 501 
569: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.nrrd
569: Computing wed ct volume...
569: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-wed-ct.mha
569: done.
569: 100 100 501 
569: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-ct.nrrd
569: 
569: STDERR: 
300: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-stats-2.stdout.txt
300: -- REGEX is AVE *([-0-9.]*)
300: -- LOWER_THRESH is -755.3
300: -- UPPER_THRESH is -754.6
300: -- PARSED VALUE=|MIN -999.914856 AVE -754.915161 MAX 0.000000 NONZERO 47950 NUMVOX 54872|
300: -- PARSED_VALUE=|-754.915161|
300: Not an error
460/571 Test #300: plm-reg-itk-demons-check-2 ............   Passed    0.02 sec
test 302
        Start 302: plm-reg-itk-demons-diff-check-1

302: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=31.2" "-DUPPER_THRESH=31.3" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
302: Test timeout computed to be: 1500
302: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.stdout.txt
302: -- REGEX is VF_AVG +[^ ] +([-0-9.]*)
302: -- LOWER_THRESH is 31.2
302: -- UPPER_THRESH is 31.3
302: -- PARSED VALUE=|VF_MAX = 102.433   VF_AVG = 31.2783|
302: -- PARSED_VALUE=|31.2783|
302: Not an error
461/571 Test #302: plm-reg-itk-demons-diff-check-1 .......   Passed    0.03 sec
test 304
        Start 304: plm-reg-itk-demons-logd-check-1

304: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=32.65" "-DUPPER_THRESH=32.75" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
304: Test timeout computed to be: 1500
277: Not an error
462/571 Test #277: plm-usage .............................   Passed    0.33 sec
test 306
        Start 306: plm-reg-itk-demons-sym-logd-check-1

306: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=31.85" "-DUPPER_THRESH=35.95" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
306: Test timeout computed to be: 1500
569: Not an error
304: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.stdout.txt
304: -- REGEX is VF_AVG +[^ ] +([-0-9.]*)
304: -- LOWER_THRESH is 32.65
304: -- UPPER_THRESH is 32.75
463/571 Test #569: wed-a .................................   Passed    5.39 sec
test 309
        Start 309: plm-bsp-mse-c-check

309: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
309: Test timeout computed to be: 1500
304: -- PARSED VALUE=|VF_MAX = 112.668   VF_AVG = 32.7138|
304: -- PARSED_VALUE=|32.7138|
304: Not an error
464/571 Test #304: plm-reg-itk-demons-logd-check-1 .......   Passed    0.03 sec
test 312
        Start 312: plm-bsp-mse-g-check

312: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
312: Test timeout computed to be: 1500
306: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.stdout.txt
306: -- REGEX is VF_AVG +[^ ] +([-0-9.]*)
306: -- LOWER_THRESH is 31.85
306: -- UPPER_THRESH is 35.95
306: -- PARSED VALUE=|VF_MAX = 109.365   VF_AVG = 31.9237|
306: -- PARSED_VALUE=|31.9237|
306: Not an error
465/571 Test #306: plm-reg-itk-demons-sym-logd-check-1 ...   Passed    0.02 sec
test 315
        Start 315: plm-bsp-mse-h-check

315: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
315: Test timeout computed to be: 1500
312: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-stats.stdout.txt
312: -- REGEX is AVE *([-0-9.]*)
312: -- LOWER_THRESH is -746.0
312: -- UPPER_THRESH is -744.5
312: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872|
312: -- PARSED_VALUE=|-745.347717|
312: Not an error
466/571 Test #312: plm-bsp-mse-g-check ...................   Passed    0.02 sec
test 318
        Start 318: plm-bsp-mse-i-check

318: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
318: Test timeout computed to be: 1500
309: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-stats.stdout.txt
309: -- REGEX is AVE *([-0-9.]*)
309: -- LOWER_THRESH is -746.0
309: -- UPPER_THRESH is -744.5
309: -- PARSED VALUE=|MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872|
309: -- PARSED_VALUE=|-745.347717|
309: Not an error
467/571 Test #309: plm-bsp-mse-c-check ...................   Passed    0.03 sec
test 321
        Start 321: plm-bsp-mse-k-check

321: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
321: Test timeout computed to be: 1500
318: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-stats.stdout.txt
318: -- REGEX is AVE *([-0-9.]*)
318: -- LOWER_THRESH is -746.0
318: -- UPPER_THRESH is -744.5
318: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872|
318: -- PARSED_VALUE=|-745.347717|
318: Not an error
468/571 Test #318: plm-bsp-mse-i-check ...................   Passed    0.01 sec
test 324
        Start 324: plm-bsp-mse-l-check

324: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
324: Test timeout computed to be: 1500
315: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-stats.stdout.txt
315: -- REGEX is AVE *([-0-9.]*)
315: -- LOWER_THRESH is -746.0
315: -- UPPER_THRESH is -744.5
315: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872|
315: -- PARSED_VALUE=|-745.347717|
315: Not an error
469/571 Test #315: plm-bsp-mse-h-check ...................   Passed    0.03 sec
test 326
        Start 326: plm-bsp-mse-o-stats

326: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-o-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
326: Test timeout computed to be: 1500
324: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-stats.stdout.txt
324: -- REGEX is AVE *([-0-9.]*)
324: -- LOWER_THRESH is -746.0
324: -- UPPER_THRESH is -744.5
324: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872|
324: -- PARSED_VALUE=|-745.347717|
324: Not an error
470/571 Test #324: plm-bsp-mse-l-check ...................   Passed    0.02 sec
test 328
        Start 328: plm-bsp-mse-p-stats

328: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-p-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
328: Test timeout computed to be: 1500
321: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-stats.stdout.txt
321: -- REGEX is AVE *([-0-9.]*)
321: -- LOWER_THRESH is -746.0
321: -- UPPER_THRESH is -744.5
321: -- PARSED VALUE=|MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872|
321: -- PARSED_VALUE=|-745.347717|
321: Not an error
471/571 Test #321: plm-bsp-mse-k-check ...................   Passed    0.03 sec
test 330
        Start 330: plm-bsp-mse-q-stats

330: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-q-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
330: Test timeout computed to be: 1500
326: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
326: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha
326: EXPECTED_ERRNO is 
328: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
328: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-img.mha
328: EXPECTED_ERRNO is 
330: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
330: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-img.mha
330: EXPECTED_ERRNO is 
328: RETVAL: 0
328: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872
328: 
328: STDERR: 
328: Not an error
472/571 Test #328: plm-bsp-mse-p-stats ...................   Passed    0.26 sec
test 332
        Start 332: plm-bsp-mse-r-stats

332: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-r-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
332: Test timeout computed to be: 1500
326: RETVAL: 0
326: STDOUT: MIN -999.989990 AVE -743.121460 MAX 0.000000 NONZERO 46674 NUMVOX 54872
326: 
326: STDERR: 
330: RETVAL: 0
330: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872
330: 
330: STDERR: 
332: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
332: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-img.mha
332: EXPECTED_ERRNO is 
467: RETVAL: 0
467: STDOUT: Contrast threshold = 0.030000
467: Curvature threshold = 172.302505
467: Computing Octave Level 0... (100 100 100 ...Computing Gradient......Done
467: Setting Up Gaussian Filter 0-0...scale: 0 sigma: 2
467: Setting Up Gaussian Filter 0-1...scale: 1 sigma: 1.53284
467: Done
467: Setting Up DoG Filter 0-1...Done
467: Setting Up Gaussian Filter 0-2...scale: 2 sigma: 1.93126
467: Done
467: Setting Up DoG Filter 0-2...Done
467: Setting Up Gaussian Filter 0-3...scale: 3 sigma: 2.43323
467: Done
467: Setting Up DoG Filter 0-3...Done
467: Setting Up Gaussian Filter 0-4...scale: 4 sigma: 3.06568
467: Done
467: Setting Up DoG Filter 0-4...Done
467: Setting Up Gaussian Filter 0-5...scale: 5 sigma: 3.86252
467: Done
467: Setting Up DoG Filter 0-5...Done
467: Searching for Extrema in DoG Image 0-1 ( 100 100 100 ) Scale 0.5
467: Acc. Num Max: 0
467: Acc. Num Min: 0
467: Acc. Num Reject: 0
467: Searching for Extrema in DoG Image 0-2 ( 100 100 100 ) Scale 0.5
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Searching for Extrema in DoG Image 0-3 ( 100 100 100 ) Scale 0.5
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Computing Octave Level 1... (50 50 50 ...Computing Gradient......Done
467: Setting Up Gaussian Filter 1-0...scale: 0 sigma: 2
467: Setting Up Gaussian Filter 1-1...scale: 1 sigma: 1.53284
467: Done
467: Setting Up DoG Filter 1-1...Done
467: Setting Up Gaussian Filter 1-2...scale: 2 sigma: 1.93126
467: Done
467: Setting Up DoG Filter 1-2...Done
467: Setting Up Gaussian Filter 1-3...scale: 3 sigma: 2.43323
467: Done
467: Setting Up DoG Filter 1-3...Done
467: Setting Up Gaussian Filter 1-4...scale: 4 sigma: 3.06568
467: Done
467: Setting Up DoG Filter 1-4...Done
467: Setting Up Gaussian Filter 1-5...scale: 5 sigma: 3.86252
467: Done
467: Setting Up DoG Filter 1-5...Done
467: Searching for Extrema in DoG Image 1-1 ( 50 50 50 ) Scale 1
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Searching for Extrema in DoG Image 1-2 ( 50 50 50 ) Scale 1
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Searching for Extrema in DoG Image 1-3 ( 50 50 50 ) Scale 1
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Computing Octave Level 2... (25 25 25 ...Computing Gradient......Done
467: Setting Up Gaussian Filter 2-0...scale: 0 sigma: 2
467: Setting Up Gaussian Filter 2-1...scale: 1 sigma: 1.53284
467: Done
467: Setting Up DoG Filter 2-1...Done
467: Setting Up Gaussian Filter 2-2...scale: 2 sigma: 1.93126
467: Done
467: Setting Up DoG Filter 2-2...Done
467: Setting Up Gaussian Filter 2-3...scale: 3 sigma: 2.43323
467: Done
467: Setting Up DoG Filter 2-3...Done
467: Setting Up Gaussian Filter 2-4...scale: 4 sigma: 3.06568
467: Done
467: Setting Up DoG Filter 2-4...Done
467: Setting Up Gaussian Filter 2-5...scale: 5 sigma: 3.86252
467: Done
467: Setting Up DoG Filter 2-5...Done
467: Searching for Extrema in DoG Image 2-1 ( 25 25 25 ) Scale 2
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Searching for Extrema in DoG Image 2-2 ( 25 25 25 ) Scale 2
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Searching for Extrema in DoG Image 2-3 ( 25 25 25 ) Scale 2
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Total Num Max: 0
467: Total Num Min: 24
467: Total Num Reject: 0
467: Contrast threshold = 0.030000
467: Curvature threshold = 172.302505
467: Computing Octave Level 0... (100 100 100 ...Computing Gradient......Done
467: Setting Up Gaussian Filter 0-0...scale: 0 sigma: 2
467: Setting Up Gaussian Filter 0-1...scale: 1 sigma: 1.53284
467: Done
467: Setting Up DoG Filter 0-1...Done
467: Setting Up Gaussian Filter 0-2...scale: 2 sigma: 1.93126
467: Done
467: Setting Up DoG Filter 0-2...Done
467: Setting Up Gaussian Filter 0-3...scale: 3 sigma: 2.43323
467: Done
467: Setting Up DoG Filter 0-3...Done
467: Setting Up Gaussian Filter 0-4...scale: 4 sigma: 3.06568
467: Done
467: Setting Up DoG Filter 0-4...Done
467: Setting Up Gaussian Filter 0-5...scale: 5 sigma: 3.86252
467: Done
467: Setting Up DoG Filter 0-5...Done
467: Searching for Extrema in DoG Image 0-1 ( 100 100 100 ) Scale 0.5
467: Acc. Num Max: 0
467: Acc. Num Min: 0
467: Acc. Num Reject: 0
467: Searching for Extrema in DoG Image 0-2 ( 100 100 100 ) Scale 0.5
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Searching for Extrema in DoG Image 0-3 ( 100 100 100 ) Scale 0.5
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Computing Octave Level 1... (50 50 50 ...Computing Gradient......Done
467: Setting Up Gaussian Filter 1-0...scale: 0 sigma: 2
467: Setting Up Gaussian Filter 1-1...scale: 1 sigma: 1.53284
467: Done
467: Setting Up DoG Filter 1-1...Done
467: Setting Up Gaussian Filter 1-2...scale: 2 sigma: 1.93126
467: Done
467: Setting Up DoG Filter 1-2...Done
467: Setting Up Gaussian Filter 1-3...scale: 3 sigma: 2.43323
467: Done
467: Setting Up DoG Filter 1-3...Done
467: Setting Up Gaussian Filter 1-4...scale: 4 sigma: 3.06568
467: Done
467: Setting Up DoG Filter 1-4...Done
467: Setting Up Gaussian Filter 1-5...scale: 5 sigma: 3.86252
467: Done
467: Setting Up DoG Filter 1-5...Done
467: Searching for Extrema in DoG Image 1-1 ( 50 50 50 ) Scale 1
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Searching for Extrema in DoG Image 1-2 ( 50 50 50 ) Scale 1
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Searching for Extrema in DoG Image 1-3 ( 50 50 50 ) Scale 1
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Computing Octave Level 2... (25 25 25 ...Computing Gradient......Done
467: Setting Up Gaussian Filter 2-0...scale: 0 sigma: 2
467: Setting Up Gaussian Filter 2-1...scale: 1 sigma: 1.53284
467: Done
467: Setting Up DoG Filter 2-1...Done
467: Setting Up Gaussian Filter 2-2...scale: 2 sigma: 1.93126
467: Done
467: Setting Up DoG Filter 2-2...Done
467: Setting Up Gaussian Filter 2-3...scale: 3 sigma: 2.43323
467: Done
467: Setting Up DoG Filter 2-3...Done
467: Setting Up Gaussian Filter 2-4...scale: 4 sigma: 3.06568
467: Done
467: Setting Up DoG Filter 2-4...Done
467: Setting Up Gaussian Filter 2-5...scale: 5 sigma: 3.86252
467: Done
467: Setting Up DoG Filter 2-5...Done
467: Searching for Extrema in DoG Image 2-1 ( 25 25 25 ) Scale 2
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Searching for Extrema in DoG Image 2-2 ( 25 25 25 ) Scale 2
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Searching for Extrema in DoG Image 2-3 ( 25 25 25 ) Scale 2
467: Acc. Num Max: 0
467: Acc. Num Min: 24
467: Acc. Num Reject: 0
467: Total Num Max: 0
467: Total Num Min: 24
467: Total Num Reject: 0
467: Keypoints1 Found: 24
467: Keypoints2 Found: 24
467: ***Keypoint Matches***
467: [7.5, -7.5, -17.5] => [7.5, -7.5, -22.5]
467: [-7.5, 7.5, -17.5] => [-7.5, 7.5, -22.5]
467: [7.5, 7.5, -17.5] => [7.5, 7.5, -22.5]
467: [-7.5, -17.5, -7.5] => [-7.5, -17.5, -12.5]
467: [7.5, -17.5, -7.5] => [7.5, -17.5, -12.5]
467: [-17.5, -7.5, -7.5] => [-17.5, -7.5, -12.5]
467: [17.5, -7.5, -7.5] => [17.5, -7.5, -12.5]
467: [-17.5, 7.5, -7.5] => [-17.5, 7.5, -12.5]
467: [17.5, 7.5, -7.5] => [17.5, 7.5, -12.5]
467: [-7.5, 17.5, -7.5] => [-7.5, 17.5, -12.5]
467: [7.5, 17.5, -7.5] => [7.5, 17.5, -12.5]
467: [-7.5, -17.5, 7.5] => [-7.5, -17.5, 2.5]
467: [7.5, -17.5, 7.5] => [7.5, -17.5, 2.5]
467: [-17.5, -7.5, 7.5] => [-17.5, -7.5, 2.5]
467: [17.5, -7.5, 7.5] => [17.5, -7.5, 2.5]
467: [-17.5, 7.5, 7.5] => [-17.5, 7.5, 2.5]
467: [17.5, 7.5, 7.5] => [17.5, 7.5, 2.5]
467: [-7.5, 17.5, 7.5] => [-7.5, 17.5, 2.5]
467: [7.5, 17.5, 7.5] => [7.5, 17.5, 2.5]
467: [-7.5, -7.5, 17.5] => [-7.5, -7.5, 12.5]
467: [7.5, -7.5, 17.5] => [7.5, -7.5, 12.5]
467: [-7.5, 7.5, 17.5] => [-7.5, 7.5, 12.5]
467: [7.5, 7.5, 17.5] => [7.5, 7.5, 12.5]
467: 
467: ***Features Matches: 23
467: 
467: STDERR: 
326: Not an error
473/571 Test #326: plm-bsp-mse-o-stats ...................   Passed    0.36 sec
test 335
        Start 335: plm-bsp-mi-c-check

335: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-114.0" "-DUPPER_THRESH=-113.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
335: Test timeout computed to be: 1500
330: Not an error
474/571 Test #330: plm-bsp-mse-q-stats ...................   Passed    0.36 sec
test 338
        Start 338: plm-bsp-mi-c-2-check

338: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-129.5" "-DUPPER_THRESH=-128.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
338: Test timeout computed to be: 1500
335: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-stats.stdout.txt
335: -- REGEX is AVE *([-0-9.]*)
335: -- LOWER_THRESH is -114.0
335: -- UPPER_THRESH is -113.0
335: -- PARSED VALUE=|MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872|
335: -- PARSED_VALUE=|-113.473007|
335: Not an error
475/571 Test #335: plm-bsp-mi-c-check ....................   Passed    0.03 sec
test 341
        Start 341: plm-bsp-mi-k-check

341: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-114.0" "-DUPPER_THRESH=-113.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
341: Test timeout computed to be: 1500
338: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-stats.stdout.txt
338: -- REGEX is AVE *([-0-9.]*)
338: -- LOWER_THRESH is -129.5
338: -- UPPER_THRESH is -128.5
338: -- PARSED VALUE=|MIN -991.894104 AVE -128.919357 MAX 0.000000 NONZERO 48385 NUMVOX 54872|
338: -- PARSED_VALUE=|-128.919357|
338: Not an error
476/571 Test #338: plm-bsp-mi-c-2-check ..................   Passed    0.03 sec
test 344
        Start 344: plm-bsp-gm-k-check

344: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-122.5" "-DUPPER_THRESH=-121.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
344: Test timeout computed to be: 1500
341: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-stats.stdout.txt
341: -- REGEX is AVE *([-0-9.]*)
341: -- LOWER_THRESH is -114.0
341: -- UPPER_THRESH is -113.0
341: -- PARSED VALUE=|MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872|
341: -- PARSED_VALUE=|-113.473007|
341: Not an error
467: Not an error
477/571 Test #341: plm-bsp-mi-k-check ....................   Passed    0.03 sec
test 346
        Start 346: plm-bsp-sm-multi-a-stats

346: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-sm-multi-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
346: Test timeout computed to be: 1500
478/571 Test #467: plm-sift-a ............................   Passed    9.45 sec
test 349
        Start 349: plm-bsp-openmp-check

349: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
349: Test timeout computed to be: 1500
344: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-stats.stdout.txt
344: -- REGEX is AVE *([-0-9.]*)
344: -- LOWER_THRESH is -122.5
344: -- UPPER_THRESH is -121.5
344: -- PARSED VALUE=|MIN -997.631409 AVE -121.961853 MAX 0.000000 NONZERO 49452 NUMVOX 54872|
344: -- PARSED_VALUE=|-121.961853|
344: Not an error
479/571 Test #344: plm-bsp-gm-k-check ....................   Passed    0.03 sec
test 351
        Start 351: plm-bsp-resume-stats

351: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-resume-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
351: Test timeout computed to be: 1500
346: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
346: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-img.mha
346: EXPECTED_ERRNO is 
349: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-stats.stdout.txt
349: -- REGEX is AVE *([-0-9.]*)
349: -- LOWER_THRESH is -746.0
349: -- UPPER_THRESH is -744.5
349: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872|
349: -- PARSED_VALUE=|-745.347717|
349: Not an error
480/571 Test #349: plm-bsp-openmp-check ..................   Passed    0.03 sec
test 353
        Start 353: plm-bsp-logfile-check

353: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-logfile.txt" "-DREGEX=\[.*,  5] MSE *([-0-9.]*)" "-DLOWER_THRESH=281.5" "-DUPPER_THRESH=282.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
353: Test timeout computed to be: 1500
351: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
351: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha
351: EXPECTED_ERRNO is 
353: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-logfile.txt
353: -- REGEX is \[.*,  5] MSE *([-0-9.]*)
353: -- LOWER_THRESH is 281.5
353: -- UPPER_THRESH is 282.5
353: -- PARSED VALUE=|[ 2,  5] MSE      282.038 NV   5851 GM    54.495 GN      43.4 [     0.009 s ]|
353: -- PARSED_VALUE=|282.038|
353: Not an error
481/571 Test #353: plm-bsp-logfile-check .................   Passed    0.03 sec
test 356
        Start 356: plm-bsp-ushort-check

356: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=106.6" "-DUPPER_THRESH=107.6" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
356: Test timeout computed to be: 1500
356: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-stats.stdout.txt
356: -- REGEX is AVE *([-0-9.]*)
356: -- LOWER_THRESH is 106.6
356: -- UPPER_THRESH is 107.6
356: -- PARSED VALUE=|MIN 0.000000 AVE 107.313034 MAX 997.000000 NONZERO 44294 NUMVOX 54872|
356: -- PARSED_VALUE=|107.313034|
356: Not an error
482/571 Test #356: plm-bsp-ushort-check ..................   Passed    0.03 sec
test 359
        Start 359: plm-bsp-double-check

359: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=107.6" "-DUPPER_THRESH=108.6" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
359: Test timeout computed to be: 1500
359: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-stats.stdout.txt
359: -- REGEX is AVE *([-0-9.]*)
359: -- LOWER_THRESH is 107.6
359: -- UPPER_THRESH is 108.6
359: -- PARSED VALUE=|MIN 0.000000 AVE 108.147682 MAX 998.045227 NONZERO 46833 NUMVOX 54872|
359: -- PARSED_VALUE=|108.147682|
359: Not an error
483/571 Test #359: plm-bsp-double-check ..................   Passed    0.03 sec
test 360
        Start 360: plm-bsp-itk-output

360: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-itk-output" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-bsp-itk-output.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
360: Test timeout computed to be: 1500
332: RETVAL: 0
332: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872
332: 
332: STDERR: 
360: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
360: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/plm-bsp-itk-output.txt
360: EXPECTED_ERRNO is 
332: Not an error
484/571 Test #332: plm-bsp-mse-r-stats ...................   Passed    0.33 sec
test 363
        Start 363: plm-bsp-char-output-check

363: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output-stats.stdout.txt" "-DREGEX=MIN *([-0-9.]*)" "-DLOWER_THRESH=-128.1" "-DUPPER_THRESH=-127.9" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
363: Test timeout computed to be: 1500
363: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output-stats.stdout.txt
363: -- REGEX is MIN *([-0-9.]*)
363: -- LOWER_THRESH is -128.1
363: -- UPPER_THRESH is -127.9
363: -- PARSED VALUE=|MIN -128.000000 AVE -127.132690 MAX 0.000000 NONZERO 54608 NUMVOX 54872|
363: -- PARSED_VALUE=|-128.000000|
363: Not an error
485/571 Test #363: plm-bsp-char-output-check .............   Passed    0.03 sec
test 367
        Start 367: plm-bsp-regularize-none-check

367: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.31" "-DUPPER_THRESH=0.32" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
367: Test timeout computed to be: 1500
367: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-stats.stdout.txt
367: -- REGEX is MINJAC *([-0-9.]*)
367: -- LOWER_THRESH is 0.31
367: -- UPPER_THRESH is 0.32
367: -- PARSED VALUE=|Jacobian:        MINJAC  0.315393 MAXJAC  1.06557|
367: -- PARSED_VALUE=|0.315393|
367: Not an error
486/571 Test #367: plm-bsp-regularize-none-check .........   Passed    0.03 sec
test 370
        Start 370: plm-bsp-regularize-analytic-check

370: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.415" "-DUPPER_THRESH=0.425" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
370: Test timeout computed to be: 1500
370: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-stats.stdout.txt
370: -- REGEX is MINJAC *([-0-9.]*)
370: -- LOWER_THRESH is 0.415
370: -- UPPER_THRESH is 0.425
370: -- PARSED VALUE=|Jacobian:        MINJAC  0.419027 MAXJAC  1.04996|
370: -- PARSED_VALUE=|0.419027|
370: Not an error
487/571 Test #370: plm-bsp-regularize-analytic-check .....   Passed    0.03 sec
test 373
        Start 373: plm-bsp-regularize-numeric-check

373: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.440" "-DUPPER_THRESH=0.445" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
373: Test timeout computed to be: 1500
346: RETVAL: 0
346: STDOUT: MIN -999.995789 AVE -886.449097 MAX -1.453729 NONZERO 54872 NUMVOX 54872
346: 
346: STDERR: 
351: RETVAL: 0
351: STDOUT: MIN -999.977539 AVE -731.734009 MAX 0.000000 NONZERO 46415 NUMVOX 54872
351: 
351: STDERR: 
373: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-stats.stdout.txt
373: -- REGEX is MINJAC *([-0-9.]*)
373: -- LOWER_THRESH is 0.440
373: -- UPPER_THRESH is 0.445
373: -- PARSED VALUE=|Jacobian:        MINJAC  0.443734 MAXJAC  1.03502|
373: -- PARSED_VALUE=|0.443734|
373: Not an error
488/571 Test #373: plm-bsp-regularize-numeric-check ......   Passed    0.03 sec
test 374
        Start 374: plm-bsp-landmark-a

374: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
374: Test timeout computed to be: 1500
346: Not an error
489/571 Test #346: plm-bsp-sm-multi-a-stats ..............   Passed    0.32 sec
test 377
        Start 377: plm-bsp-landmark-b-check

377: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
377: Test timeout computed to be: 1500
374: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
374: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a.txt
374: EXPECTED_ERRNO is 
351: Not an error
377: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-stats.stdout.txt
377: -- REGEX is AVE *([-0-9.]*)
377: -- LOWER_THRESH is -991.5
377: -- UPPER_THRESH is -991.0
377: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872|
377: -- PARSED_VALUE=|-991.355164|
377: Not an error
490/571 Test #351: plm-bsp-resume-stats ..................   Passed    0.33 sec
test 380
        Start 380: plm-bsp-landmark-c-check

380: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
380: Test timeout computed to be: 1500
360: RETVAL: 0
360: STDOUT: Loading fixed image [0]: gauss-1.mha
360: Loading moving image [0]: gauss-2.mha
360: Launching registration worker thread
360: Inside registration worker thread
360: Doing registration stage
360: [1] xf_in->m_type = 0, xf_out->m_type = 0
360: RESAMPLE 1 1: (2 2 2), (2 2 2)
360: RESAMPLE 1 1: (2 2 2), (2 2 2)
360: volume_calc_grad complete.
360: bspline_xform_initialize
360: rdims = (2,2,2)
360: vox_per_rgn = (11,11,11)
360: cdims = (5 5 5)
360: Algorithm flavor = h
360: Threading = 0
360: >> Checking JH allocation
360: BSPLINE PARMS
360: max_its = 5
360: max_feval = 5
360: BSPLINE XFORM HEADER
360: vox_per_rgn = 11 11 11
360: roi_offset = 0 0 0
360: roi_dim = 19 19 19
360: img_dc = 1 0 0 0 1 0 0 0 1
360: BST METRICS
360: MET 110100 MSE 1.000000
360: Setting nmax, mmax = 375 21
360: >>> START     
360: This problem is unconstrained.
360: [ 0,  0] MSE    18756.236 NV   6859 GM -2980.067 GN       852 [     0.005 s ]
360:          CMIN   0.00 CAVG   0.00 CMAX   0.00
360:          LSD   0.00
360: [ 0,  1] MSE    17838.633 NV   6859 GM -2882.393 GN       824 [     0.005 s ]
360:          CMIN  -0.07 CAVG   0.01 CMAX   0.68
360:          LSD   1.00
360: [ 0,  2] MSE    14464.859 NV   6858 GM -2822.149 GN       824 [     0.005 s ]
360:          CMIN  -0.35 CAVG   0.05 CMAX   3.40
360:          LSD   5.00
360: [ 0,  3] MSE     3829.066 NV   6286 GM -1585.570 GN       459 [     0.004 s ]
360:          CMIN  -1.48 CAVG   0.20 CMAX  14.26
360:          LSD  21.00
360: [ 1,  4] MSE     3098.538 NV   5455 GM  1176.092 GN       399 [     0.004 s ]
360:          CMIN  -1.74 CAVG   0.44 CMAX  32.50
360:          LSD  27.95
360: [ 2,  5] MSE      282.038 NV   5851 GM    54.495 GN      43.4 [     0.004 s ]
360:          CMIN  -1.73 CAVG   0.34 CMAX  23.99
360:          LSD  13.11
360: [2] xf_out->m_type = 9, xf_in->m_type = 0
360: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
360: bspline_xform_initialize
360: rdims = (2,2,2)
360: vox_per_rgn = (22,22,22)
360: cdims = (5 5 5)
360: ** Registration worker thread finished.
360: Writing transformation ...
360: Load:   0.0357521
360: Run:    0.0379009
360: Save:   0.00401402
360: Total:  0.077667
360: Finished!
360: 
360: STDERR: 
491/571 Test #377: plm-bsp-landmark-b-check ..............   Passed    0.03 sec
test 383
        Start 383: plm-bsp-landmark-d-check

383: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
383: Test timeout computed to be: 1500
380: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-stats.stdout.txt
380: -- REGEX is AVE *([-0-9.]*)
380: -- LOWER_THRESH is -991.5
380: -- UPPER_THRESH is -991.0
380: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872|
380: -- PARSED_VALUE=|-991.355164|
380: Not an error
492/571 Test #380: plm-bsp-landmark-c-check ..............   Passed    0.03 sec
test 386
        Start 386: plm-bsp-landmark-e-check

386: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
386: Test timeout computed to be: 1500
383: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-stats.stdout.txt
383: -- REGEX is AVE *([-0-9.]*)
383: -- LOWER_THRESH is -991.5
383: -- UPPER_THRESH is -991.0
383: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872|
383: -- PARSED_VALUE=|-991.355164|
383: Not an error
493/571 Test #383: plm-bsp-landmark-d-check ..............   Passed    0.03 sec
test 389
        Start 389: plm-bsp-dcos-a-check

389: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
389: Test timeout computed to be: 1500
386: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-stats.stdout.txt
386: -- REGEX is AVE *([-0-9.]*)
386: -- LOWER_THRESH is -991.5
386: -- UPPER_THRESH is -991.0
386: -- PARSED VALUE=|MIN -1000.000183 AVE -991.396057 MAX 0.000000 NONZERO 54488 NUMVOX 54872|
386: -- PARSED_VALUE=|-991.396057|
386: Not an error
494/571 Test #386: plm-bsp-landmark-e-check ..............   Passed    0.02 sec
test 392
        Start 392: plm-bsp-dcos-b-check

392: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
392: Test timeout computed to be: 1500
389: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-stats.stdout.txt
389: -- REGEX is AVE *([-0-9.]*)
389: -- LOWER_THRESH is -816
389: -- UPPER_THRESH is -815
389: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872|
389: -- PARSED_VALUE=|-815.591492|
389: Not an error
495/571 Test #389: plm-bsp-dcos-a-check ..................   Passed    0.03 sec
test 395
        Start 395: plm-bsp-dcos-c-check

395: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
395: Test timeout computed to be: 1500
392: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-stats.stdout.txt
392: -- REGEX is AVE *([-0-9.]*)
392: -- LOWER_THRESH is -796.8
392: -- UPPER_THRESH is -795.8
392: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872|
392: -- PARSED_VALUE=|-796.376221|
392: Not an error
496/571 Test #392: plm-bsp-dcos-b-check ..................   Passed    0.03 sec
test 398
        Start 398: plm-bsp-dcos-d-check

398: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
398: Test timeout computed to be: 1500
395: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-stats.stdout.txt
395: -- REGEX is AVE *([-0-9.]*)
395: -- LOWER_THRESH is -816
395: -- UPPER_THRESH is -815
395: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872|
395: -- PARSED_VALUE=|-815.591492|
395: Not an error
497/571 Test #395: plm-bsp-dcos-c-check ..................   Passed    0.03 sec
test 401
        Start 401: plm-bsp-dcos-e-check

401: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
401: Test timeout computed to be: 1500
360: Not an error
498/571 Test #360: plm-bsp-itk-output ....................   Passed    0.34 sec
test 404
        Start 404: plm-bsp-dcos-f-check

404: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
404: Test timeout computed to be: 1500
398: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-stats.stdout.txt
398: -- REGEX is AVE *([-0-9.]*)
398: -- LOWER_THRESH is -796.8
398: -- UPPER_THRESH is -795.8
398: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872|
398: -- PARSED_VALUE=|-796.376221|
398: Not an error
499/571 Test #398: plm-bsp-dcos-d-check ..................   Passed    0.03 sec
test 407
        Start 407: plm-reg-multi-a-check

407: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-22" "-DUPPER_THRESH=-18" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
407: Test timeout computed to be: 1500
401: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-stats.stdout.txt
401: -- REGEX is AVE *([-0-9.]*)
401: -- LOWER_THRESH is -816
401: -- UPPER_THRESH is -815
401: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872|
401: -- PARSED_VALUE=|-815.591492|
401: Not an error
500/571 Test #401: plm-bsp-dcos-e-check ..................   Passed    0.03 sec
test 410
        Start 410: plm-reg-multi-b-check

410: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-987" "-DUPPER_THRESH=-984" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
410: Test timeout computed to be: 1500
404: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-stats.stdout.txt
404: -- REGEX is AVE *([-0-9.]*)
404: -- LOWER_THRESH is -796.8
404: -- UPPER_THRESH is -795.8
404: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872|
404: -- PARSED_VALUE=|-796.376221|
404: Not an error
501/571 Test #404: plm-bsp-dcos-f-check ..................   Passed    0.03 sec
test 413
        Start 413: plm-reg-dv-itk-translation-check

413: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-467.1" "-DUPPER_THRESH=-366.9" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
413: Test timeout computed to be: 1500
407: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stats.stdout.txt
407: -- REGEX is Mean: *([-0-9.]*)
407: -- LOWER_THRESH is -22
407: -- UPPER_THRESH is -18
407: -- PARSED VALUE=|Mean:               -20.000     -0.000     -0.000|
407: -- PARSED_VALUE=|-20.000|
407: Not an error
502/571 Test #407: plm-reg-multi-a-check .................   Passed    0.03 sec
test 414
        Start 414: plm-reg-roi-a

414: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
414: Test timeout computed to be: 1500
410: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-stats.stdout.txt
410: -- REGEX is AVE *([-0-9.]*)
410: -- LOWER_THRESH is -987
410: -- UPPER_THRESH is -984
410: -- PARSED VALUE=|MIN -1000.000183 AVE -985.762146 MAX 0.000000 NONZERO 54224 NUMVOX 54872|
410: -- PARSED_VALUE=|-985.762146|
410: Not an error
503/571 Test #410: plm-reg-multi-b-check .................   Passed    0.03 sec
test 415
        Start 415: plm-reg-roi-b

415: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
415: Test timeout computed to be: 1500
413: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-stats.stdout.txt
413: -- REGEX is AVE *([-0-9.]*)
413: -- LOWER_THRESH is -467.1
413: -- UPPER_THRESH is -366.9
413: -- PARSED VALUE=|MIN -999.914246 AVE -467.031616 MAX 1000.000000 NONZERO 54872 NUMVOX 54872|
413: -- PARSED_VALUE=|-467.031616|
413: Not an error
504/571 Test #413: plm-reg-dv-itk-translation-check ......   Passed    0.03 sec
test 416
        Start 416: plm-reg-roi-c

416: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
416: Test timeout computed to be: 1500
414: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
414: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a.txt
414: EXPECTED_ERRNO is 
415: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
415: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b.txt
415: EXPECTED_ERRNO is 
416: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
416: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c.txt
416: EXPECTED_ERRNO is 
374: RETVAL: 0
374: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha
374: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha
374: Loading fixed landmarks: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv
374: Loading moving landmarks: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-3.fcsv
374: Launching registration worker thread
374: Inside registration worker thread
374: Doing registration stage
374: [1] xf_in->m_type = 0, xf_out->m_type = 0
374: RESAMPLE 1 1: (2 2 2), (2 2 2)
374: RESAMPLE 1 1: (2 2 2), (2 2 2)
374: volume_calc_grad complete.
374: bspline_xform_initialize
374: Warning: vox_per_rgn was less than 4.
374: Warning: vox_per_rgn was less than 4.
374: Warning: vox_per_rgn was less than 4.
374: rdims = (5,5,5)
374: vox_per_rgn = (4,4,4)
374: cdims = (8 8 8)
374: Algorithm flavor = h
374: Threading = 0
374: Landmarks: 8 fixed, 8 moving, lambda = 1.000000
374: >> Checking JH allocation
374: Computing landmark grid coordinates
374: image dc=1 0 0 0 1 0 0 0 1
374: image or=-236.842 -236.842 -236.842
374: image dm=19 19 19
374: [0], (-26.2717 -52.1629 46.0528) -> (8.001675 7.017809 10.750006)
374: [1], (65.8702 -52.5436 46.053) -> (11.503067 7.003343 10.750014)
374: [2], (65.8702 52.5439 46.053) -> (11.503067 10.996667 10.750014)
374: [3], (-25.5102 53.6862 46.053) -> (8.030612 11.040074 10.750014)
374: [4], (-25.891 -52.1629 -46.0525) -> (8.016141 7.017809 7.250004)
374: [5], (66.6317 -53.3051 -46.053) -> (11.532004 6.974406 7.249985)
374: [6], (65.8702 53.3054 -46.053) -> (11.503067 11.025604 7.249985)
374: [7], (-25.1295 53.6862 -46.053) -> (8.045078 11.040074 7.249985)
374: BSPLINE PARMS
374: max_its = 5
374: max_feval = 5
374: BSPLINE XFORM HEADER
374: vox_per_rgn = 4 4 4
374: roi_offset = 0 0 0
374: roi_dim = 19 19 19
374: img_dc = 1 0 0 0 1 0 0 0 1
374: BST METRICS
374: MET 110100 MSE 1.000000
374: Setting nmax, mmax = 1536 41
374: >>> START     
374: This problem is unconstrained.
374: [ 0,  0] SCORE   3407.677 NV   6859 GM    84.848 GN        25 [     0.005 s ]
374:          MSE     2961.435 LM   446.242 
374:          CMIN   0.00 CAVG   0.00 CMAX   0.00
374:          LSD   0.00
374: [ 0,  1] SCORE   3361.326 NV   6859 GM    83.763 GN      24.7 [     0.005 s ]
374:          MSE     2923.708 LM   437.617 
374:          CMIN  -0.50 CAVG  -0.00 CMAX   0.07
374:          LSD   1.00
374: [ 0,  2] SCORE   3181.879 NV   6859 GM    79.422 GN      23.5 [     0.005 s ]
374:          MSE     2777.757 LM   404.122 
374:          CMIN  -2.48 CAVG  -0.01 CMAX   0.34
374:          LSD   5.00
374: [ 0,  3] SCORE   2557.441 NV   6859 GM    62.038 GN      18.9 [     0.005 s ]
374:          MSE     2271.265 LM   286.176 
374:          CMIN -10.41 CAVG  -0.05 CMAX   1.44
374:          LSD  21.00
374: [ 1,  4] SCORE   1117.771 NV   6859 GM    -1.799 GN      6.83 [     0.005 s ]
374:          MSE     1009.222 LM   108.548 
374:          CMIN -45.97 CAVG  -0.19 CMAX  12.05
374:          LSD  76.81
374: [ 2,  5] SCORE    848.407 NV   6859 GM   -12.697 GN      4.53 [     0.006 s ]
374:          MSE      667.771 LM   180.635 
374:          CMIN -54.81 CAVG  -0.22 CMAX  17.65
374:          LSD  34.30
374: [2] xf_out->m_type = 9, xf_in->m_type = 0
374: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
374: bspline_xform_initialize
374: rdims = (5,5,5)
374: vox_per_rgn = (8,8,8)
374: cdims = (8 8 8)
374: ** Registration worker thread finished.
374: Writing transformation ...
374: Warping...
374: Running: plm_warp_native
374: Converting input image...
374: Converting xform...
374: bspline_xform_initialize
374: rdims = (5,5,5)
374: vox_per_rgn = (8,8,8)
374: cdims = (8 8 8)
374: Creating output vf...
374: Creating output volume...
374: Running native warper...
374: bspline_warp complete.
374: Back convert to original type...
374: > Convert vf to itk
374: > Conversion complete.
374: plm_warp_native is complete.
374: Saving image...
374: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a-img.mha
374: Saving warped landmarks...
374: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a-warped.fcsv
374: Saving vf...
374: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a-vf.mha
374: Load:   0.0559762
374: Run:    0.0425351
374: Save:   0.055604
374: Total:  0.154115
374: Finished!
374: 
374: STDERR: 
374: Not an error
505/571 Test #374: plm-bsp-landmark-a ....................   Passed    0.52 sec
test 417
        Start 417: plm-reg-roi-d

417: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-d" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
417: Test timeout computed to be: 1500
415: RETVAL: 0
415: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha
415: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha
415: Loading fixed roi [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha
415: Loading moving roi [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha
415: Launching registration worker thread
415: Inside registration worker thread
415: Doing registration stage
415: [1] xf_in->m_type = 0, xf_out->m_type = 0
415: [2] xf_out->m_type = 1, xf_in->m_type = 0
415: Doing registration stage
415: [1] xf_in->m_type = 1, xf_out->m_type = 0
415: Fixed image for this stage:
415: Dim = 15 25 15
415: Origin = -14 -24 -14
415: Spacing = 2 2 2
415: Direction Cosines =
415:  1 0 0
415:  0 1 0
415:  0 0 1
415: Moving image for this stage:
415: Dim = 15 25 15
415: Origin = -14 -24 -14
415: Spacing = 2 2 2
415: Direction Cosines =
415:  1 0 0
415:  0 1 0
415:  0 0 1
415: Initial Parameters = [0, 0, 0]
415: Starting ITK registration
415: StartEvent: [0, 0, 0]
415: EndEvent: [0, 0, 0]
415: RegularStepGradientDescentOptimizer: Gradient magnitude tolerance met after 0 iterations. Gradient magnitude (0) is less than gradient magnitude tolerance (0.0001).
415: ITK registration complete
415: [2] xf_out->m_type = 1, xf_in->m_type = 1
415: ** Registration worker thread finished.
415: Writing transformation ...
415: Warping...
415: plm_warp_itk: xform_to_itk_vf
415: plm_warp_itk: convert_to_itk
415: plm_warp_itk: warping...
415: Saving image...
415: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b-img.mha
415: Saving vf...
415: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b-vf.mha
415: Load:   0.0540581
415: Run:    0.0214441
415: Save:   0.044703
415: Total:  0.120205
415: Finished!
415: 
415: STDERR: 
417: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
417: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d.txt
417: EXPECTED_ERRNO is 
415: Not an error
506/571 Test #415: plm-reg-roi-b .........................   Passed    0.42 sec
test 418
        Start 418: plm-reg-roi-e

418: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-e" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
418: Test timeout computed to be: 1500
418: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
418: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e.txt
418: EXPECTED_ERRNO is 
416: RETVAL: 0
416: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha
416: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha
416: Loading fixed roi [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha
416: Launching registration worker thread
416: Inside registration worker thread
416: Doing registration stage
416: [1] xf_in->m_type = 0, xf_out->m_type = 0
416: RESAMPLE 1 1: (2 2 2), (2 2 2)
416: RESAMPLE 1 1: (2 2 2), (2 2 2)
416: volume_calc_grad complete.
416: bspline_xform_initialize
416: rdims = (3,5,3)
416: vox_per_rgn = (5,5,5)
416: cdims = (6 8 6)
416: Algorithm flavor = g
416: Threading = 0
416: Regularization: flavor = c lambda = 0.100000
416: Regularizer initialized
416: >> Checking JH allocation
416: BSPLINE PARMS
416: max_its = 10
416: max_feval = 10
416: BSPLINE XFORM HEADER
416: vox_per_rgn = 5 5 5
416: roi_offset = 0 0 0
416: roi_dim = 15 25 15
416: img_dc = 1 0 0 0 1 0 0 0 1
416: BST METRICS
416: MET 110110 MSE 1.000000
416: Setting nmax, mmax = 864 31
416: >>> START     
416: This problem is unconstrained.
416: [ 0,  0] SCORE  0.0000000 NV   1690 GM     0.000 GN         0 [     0.056 s ]
416:          MSE    0.0000000 RM     0.000 [     0.036 |     0.020 ]
416:          CMIN   0.00 CAVG   0.00 CMAX   0.00
416:          LSD   0.00
416:            * * *
416: 
416: Tit   = total number of iterations
416: Tnf   = total number of function evaluations
416: Tnint = total number of segments explored during Cauchy searches
416: Skip  = number of BFGS updates skipped
416: Nact  = number of active bounds at final generalized Cauchy point
416: Projg = norm of the final projected gradient
416: F     = final function value
416: 
416:            * * *
416:    N   Tit  Tnf  Tnint  Skip  Nact     Projg        F
416:   864    0    1      0    0     0           0           0
416:             CONVERGENCE: NORM_OF_PROJECTED_GRADIENT_<=_PGTOL
416:  Total User time          0 seconds.
416: [2] xf_out->m_type = 9, xf_in->m_type = 0
416: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
416: bspline_xform_initialize
416: rdims = (3,5,3)
416: vox_per_rgn = (10,10,10)
416: cdims = (6 8 6)
416: ** Registration worker thread finished.
416: Writing transformation ...
416: Warping...
416: Running: plm_warp_native
416: Converting input image...
416: Converting xform...
416: bspline_xform_initialize
416: rdims = (3,5,3)
416: vox_per_rgn = (10,10,10)
416: cdims = (6 8 6)
416: Creating output vf...
416: Creating output volume...
416: Running native warper...
416: bspline_warp complete.
416: Back convert to original type...
416: > Convert vf to itk
416: > Conversion complete.
416: plm_warp_native is complete.
416: Saving image...
416: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c-img.mha
416: Saving vf...
416: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c-vf.mha
416: Load:   0.078666
416: Run:    0.0796902
416: Save:   0.066885
416: Total:  0.225241
416: Finished!
416: 
416: STDERR: 
414: RETVAL: 0
414: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha
414: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha
414: Loading fixed roi [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha
414: Loading moving roi [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha
414: Launching registration worker thread
414: Inside registration worker thread
414: Doing registration stage
414: [1] xf_in->m_type = 0, xf_out->m_type = 0
414: RESAMPLE 1 1: (1 1 1), (1 1 1)
414: RESAMPLE 1 1: (1 1 1), (1 1 1)
414: volume_calc_grad complete.
414: bspline_xform_initialize
414: Warning: vox_per_rgn was less than 4.
414: Warning: vox_per_rgn was less than 4.
414: Warning: vox_per_rgn was less than 4.
414: rdims = (10,10,10)
414: vox_per_rgn = (4,4,4)
414: cdims = (13 13 13)
414: Algorithm flavor = h
414: Threading = 0
414: >> Checking JH allocation
414: >> Performing JH allocation
414: BSPLINE PARMS
414: max_its = 5
414: max_feval = 5
414: BSPLINE XFORM HEADER
414: vox_per_rgn = 4 4 4
414: roi_offset = 0 0 0
414: roi_dim = 38 38 38
414: img_dc = 1 0 0 0 1 0 0 0 1
414: BST METRICS
414: MET 110111 MI 1.000000
414: >> Performing JH initialization
414: Setting nmax, mmax = 6591 83
414: >>> START     
414: This problem is unconstrained.
414: [ 0,  0] MI     -0.0060547 NV    729 GM     0.008 GN    0.0011 [     0.023 s ]
414:          CMIN   0.01 CAVG   0.01 CMAX   0.01
414:          LSD   0.00
414: [ 0,  1] MI     -0.0496013 NV    569 GM    -0.020 GN   0.00349 [     0.022 s ]
414:          CMIN  -0.30 CAVG   0.01 CMAX   0.04
414:          LSD   1.00
414: [ 1,  2] MI     -0.0061482 NV    729 GM     0.000 GN   0.00024 [     0.017 s ]
414:          CMIN  -0.30 CAVG   0.01 CMAX   0.05
414:          LSD   0.25
414: [ 1,  3] MI     -0.0496042 NV    569 GM    -0.020 GN   0.00349 [     0.024 s ]
414:          CMIN  -0.30 CAVG   0.01 CMAX   0.04
414:          LSD   0.00
414: [ 1,  4] MI     -0.0496071 NV    569 GM    -0.020 GN   0.00349 [     0.033 s ]
414:          CMIN  -0.30 CAVG   0.01 CMAX   0.04
414:          LSD   0.00
414: [ 1,  5] MI     -0.0020808 NV    629 GM    -0.002 GN  0.000318 [     0.018 s ]
414:          CMIN  -0.30 CAVG   0.01 CMAX   0.05
414:          LSD   0.12
414: [2] xf_out->m_type = 9, xf_in->m_type = 0
414: ** Registration worker thread finished.
414: Writing transformation ...
414: Warping...
414: Running: plm_warp_native
414: Converting input image...
414: Converting xform...
414: bspline_xform_initialize
414: rdims = (10,10,10)
414: vox_per_rgn = (4,4,4)
414: cdims = (13 13 13)
414: Creating output vf...
414: Creating output volume...
414: Running native warper...
414: bspline_warp complete.
414: Back convert to original type...
414: > Convert vf to itk
414: > Conversion complete.
414: plm_warp_native is complete.
414: Saving image...
414: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a-img.mha
414: Saving vf...
414: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a-vf.mha
414: Load:   0.0559602
414: Run:    0.148062
414: Save:   0.106292
414: Total:  0.310314
414: Finished!
414: 
414: STDERR: 
416: Not an error
507/571 Test #416: plm-reg-roi-c .........................   Passed    0.55 sec
test 419
        Start 419: plm-reg-stiffness-a

419: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-stiffness-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=register;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
419: Test timeout computed to be: 1500
419: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
419: PARMS is register;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a.txt
419: EXPECTED_ERRNO is 
414: Not an error
508/571 Test #414: plm-reg-roi-a .........................   Passed    0.67 sec
test 422
        Start 422: plm-reg-process-a-check

422: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-491.0" "-DUPPER_THRESH=-490.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
422: Test timeout computed to be: 1500
422: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a-stats.stdout.txt
422: -- REGEX is AVE *([-0-9.]*)
422: -- LOWER_THRESH is -491.0
422: -- UPPER_THRESH is -490.0
422: -- PARSED VALUE=|MIN -500.000000 AVE -490.647552 MAX 0.000000 NONZERO 54871 NUMVOX 54872|
422: -- PARSED_VALUE=|-490.647552|
422: Not an error
509/571 Test #422: plm-reg-process-a-check ...............   Passed    0.03 sec
test 425
        Start 425: plm-reg-trans-a-check

425: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-661.75" "-DUPPER_THRESH=-661.65" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
425: Test timeout computed to be: 1500
425: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a-stats.stdout.txt
425: -- REGEX is AVE *([-0-9.]*)
425: -- LOWER_THRESH is -661.75
425: -- UPPER_THRESH is -661.65
425: -- PARSED VALUE=|MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872|
425: -- PARSED_VALUE=|-661.690491|
425: Not an error
510/571 Test #425: plm-reg-trans-a-check .................   Passed    0.03 sec
test 428
        Start 428: plm-reg-trans-b-check

428: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-661.75" "-DUPPER_THRESH=-661.65" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
428: Test timeout computed to be: 1500
428: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b-stats.stdout.txt
428: -- REGEX is AVE *([-0-9.]*)
428: -- LOWER_THRESH is -661.75
428: -- UPPER_THRESH is -661.65
428: -- PARSED VALUE=|MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872|
428: -- PARSED_VALUE=|-661.690491|
428: Not an error
511/571 Test #428: plm-reg-trans-b-check .................   Passed    0.07 sec
test 431
        Start 431: plm-reg-trans-mi-a-check

431: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-612.75" "-DUPPER_THRESH=-612.60" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
431: Test timeout computed to be: 1500
431: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a-stats.stdout.txt
431: -- REGEX is AVE *([-0-9.]*)
431: -- LOWER_THRESH is -612.75
431: -- UPPER_THRESH is -612.60
431: -- PARSED VALUE=|MIN -999.826416 AVE -612.681030 MAX 0.000000 NONZERO 39701 NUMVOX 54872|
431: -- PARSED_VALUE=|-612.681030|
431: Not an error
512/571 Test #431: plm-reg-trans-mi-a-check ..............   Passed    0.06 sec
test 434
        Start 434: plm-reg-autores-a-check

434: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-597.6" "-DUPPER_THRESH=-597.5" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
434: Test timeout computed to be: 1500
434: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a-stats.stdout.txt
434: -- REGEX is AVE *([-0-9.]*)
434: -- LOWER_THRESH is -597.6
434: -- UPPER_THRESH is -597.5
434: -- PARSED VALUE=|MIN -999.770874 AVE -597.535889 MAX 0.000000 NONZERO 38880 NUMVOX 54872|
434: -- PARSED_VALUE=|-597.535889|
434: Not an error
513/571 Test #434: plm-reg-autores-a-check ...............   Passed    0.06 sec
test 437
        Start 437: plm-reg-autores-b-check

437: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-597.5" "-DUPPER_THRESH=-597.4" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
437: Test timeout computed to be: 1500
437: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b-stats.stdout.txt
437: -- REGEX is AVE *([-0-9.]*)
437: -- LOWER_THRESH is -597.5
437: -- UPPER_THRESH is -597.4
437: -- PARSED VALUE=|MIN -999.769348 AVE -597.450806 MAX 0.000000 NONZERO 38880 NUMVOX 54872|
437: -- PARSED_VALUE=|-597.450806|
437: Not an error
514/571 Test #437: plm-reg-autores-b-check ...............   Passed    0.06 sec
test 438
        Start 438: plm-reg-point-dmap-a

438: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-point-dmap-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
438: Test timeout computed to be: 1500
438: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
438: PARMS is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a.txt
438: EXPECTED_ERRNO is 
417: RETVAL: 0
417: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha
417: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha
417: Loading fixed roi [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha
417: Launching registration worker thread
417: Inside registration worker thread
417: Doing registration stage
417: [1] xf_in->m_type = 0, xf_out->m_type = 0
417: RESAMPLE 1 1: (2 2 2), (2 2 2)
417: RESAMPLE 1 1: (2 2 2), (2 2 2)
417: volume_calc_grad complete.
417: bspline_xform_initialize
417: rdims = (3,5,3)
417: vox_per_rgn = (5,5,5)
417: cdims = (6 8 6)
417: Algorithm flavor = g
417: Threading = 0
417: Regularization: flavor = c lambda = 0.100000
417: Regularizer initialized
417: >> Checking JH allocation
417: BSPLINE PARMS
417: max_its = 10
417: max_feval = 10
417: BSPLINE XFORM HEADER
417: vox_per_rgn = 5 5 5
417: roi_offset = 0 0 0
417: roi_dim = 15 25 15
417: img_dc = 1 0 0 0 1 0 0 0 1
417: BST METRICS
417: MET 110110 MSE 1.000000
417: Setting nmax, mmax = 864 31
417: >>> START     
417: This problem is unconstrained.
417: [ 0,  0] SCORE  66568.047 NV   1690 GM 14792.900 GN  3.94e+03 [     0.035 s ]
417:          MSE    66568.047 RM     0.000 [     0.018 |     0.017 ]
417:          CMIN   0.00 CAVG   0.00 CMAX   0.00
417:          LSD   0.00
417: [ 0,  1] SCORE  60779.625 NV   1690 GM 13427.228 GN  3.59e+03 [     0.021 s ]
417:          MSE    60779.609 RM     0.015 [     0.008 |     0.013 ]
417:          CMIN  -0.46 CAVG  -0.00 CMAX   0.10
417:          LSD   1.00
417: [ 0,  2] SCORE  43202.340 NV   1690 GM 16992.866 GN  4.39e+03 [     0.021 s ]
417:          MSE    43201.965 RM     0.376 [     0.008 |     0.012 ]
417:          CMIN  -2.30 CAVG  -0.02 CMAX   0.50
417:          LSD   5.00
417: [ 0,  3] SCORE  11325.080 NV   1619 GM  -932.100 GN  1.45e+03 [     0.024 s ]
417:          MSE    11318.452 RM     6.628 [     0.008 |     0.016 ]
417:          CMIN  -9.66 CAVG  -0.09 CMAX   2.11
417:          LSD  21.00
417: [ 1,  4] SCORE   5165.491 NV   1647 GM  1195.560 GN       605 [     0.022 s ]
417:          MSE     5160.030 RM     5.461 [     0.010 |     0.012 ]
417:          CMIN  -7.99 CAVG  -0.09 CMAX   1.46
417:          LSD   4.95
417: [ 2,  5] SCORE   5370.420 NV   1649 GM -3582.381 GN       910 [     0.052 s ]
417:          MSE     5363.509 RM     6.911 [     0.024 |     0.028 ]
417:          CMIN  -8.90 CAVG  -0.10 CMAX   1.42
417:          LSD   5.04
417: [ 2,  6] SCORE   4305.869 NV   1649 GM -1305.969 GN       395 [     0.035 s ]
417:          MSE     4299.880 RM     5.989 [     0.011 |     0.023 ]
417:          CMIN  -7.75 CAVG  -0.10 CMAX   1.44
417:          LSD   2.37
417: [ 3,  7] SCORE   4280.987 NV   1653 GM  1734.354 GN       474 [     0.039 s ]
417:          MSE     4275.453 RM     5.534 [     0.025 |     0.014 ]
417:          CMIN  -7.64 CAVG  -0.09 CMAX   1.40
417:          LSD   1.62
417: [ 4,  8] SCORE   4194.305 NV   1651 GM   205.505 GN       129 [     0.033 s ]
417:          MSE     4188.512 RM     5.794 [     0.012 |     0.021 ]
417:          CMIN  -7.74 CAVG  -0.10 CMAX   1.43
417:          LSD   0.60
417: [ 5,  9] SCORE   4196.242 NV   1645 GM   115.154 GN       112 [     0.048 s ]
417:          MSE     4190.442 RM     5.800 [     0.014 |     0.034 ]
417:          CMIN  -7.66 CAVG  -0.10 CMAX   1.43
417:          LSD   0.26
417: [ 5, 10] SCORE   4195.648 NV   1649 GM   201.989 GN       124 [     0.056 s ]
417:          MSE     4189.854 RM     5.795 [     0.019 |     0.038 ]
417:          CMIN  -7.72 CAVG  -0.10 CMAX   1.43
417:          LSD   0.06
417: [2] xf_out->m_type = 9, xf_in->m_type = 0
417: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
417: bspline_xform_initialize
417: rdims = (3,5,3)
417: vox_per_rgn = (10,10,10)
417: cdims = (6 8 6)
417: ** Registration worker thread finished.
417: Writing transformation ...
417: Warping...
417: Running: plm_warp_native
417: Converting input image...
417: Converting xform...
417: bspline_xform_initialize
417: rdims = (3,5,3)
417: vox_per_rgn = (10,10,10)
417: cdims = (6 8 6)
417: Creating output vf...
417: Creating output volume...
417: Running native warper...
417: bspline_warp complete.
417: Back convert to original type...
417: > Convert vf to itk
417: > Conversion complete.
417: plm_warp_native is complete.
417: Saving image...
417: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d-img.mha
417: Saving vf...
417: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d-vf.mha
417: Load:   0.060657
417: Run:    0.406769
417: Save:   0.106402
417: Total:  0.573828
417: Finished!
417: 
417: STDERR: 
417: Not an error
515/571 Test #417: plm-reg-roi-d .........................   Passed    1.00 sec
test 441
        Start 441: plm-compose-a-warp

441: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a-warp" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
441: Test timeout computed to be: 1500
441: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
441: PARMS is warp;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha
441: EXPECTED_ERRNO is 
418: RETVAL: 0
418: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha
418: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha
418: Launching registration worker thread
418: Inside registration worker thread
418: Doing registration stage
418: [1] xf_in->m_type = 0, xf_out->m_type = 0
418: Fixed image for this stage:
418: Dim = 15 25 15
418: Origin = -14 -24 -14
418: Spacing = 2 2 2
418: Direction Cosines =
418:  1 0 0
418:  0 1 0
418:  0 0 1
418: Moving image for this stage:
418: Dim = 15 25 15
418: Origin = -14 -24 -14
418: Spacing = 2 2 2
418: Direction Cosines =
418:  1 0 0
418:  0 1 0
418:  0 0 1
418: Initial Parameters = [0, 0, 0]
418: Starting ITK registration
418: StartEvent: [0, 0, 0]
418: MSE [ 0,  0, 1.00] 20000.000 [0, 0, 0] *
418: MSE [ 1,  1, 1.00] 16666.407 [-0.9999999727511648, 0.00023344735891123153, 0]   -3333.59 *
418: MSE [ 2,  2, 1.00] 21428.450 [-1.9999999583532024, 0.00006375373999516521, 0]    4762.04
418: MSE [ 3,  3, 0.50] 17856.955 [-2.9999999539450632, 0.00015764878267375857, 3.1216197675269384e-16]   -3571.49
418: MSE [ 4,  4, 0.50] 18749.999 [-2.4999999789370184, -4.3965600462933475e-7, 3.2374432361540487e-16]     893.04
418: MSE [ 5,  5, 0.25] 21428.553 [-1.9999999790242364, -0.000009778710908766488, 2.9394617766551354e-16]    2678.55
418: MSE [ 6,  6, 0.12] 19865.879 [-2.2499999446638332, 0.00012129455271902395, 3.199596731308009e-16]   -1562.67
418: MSE [ 7,  7, 0.06] 20591.445 [-2.1250000509246827, -0.00004169379354032787, 3.199596731308009e-16]     725.57
418: MSE [ 8,  8, 0.03] 20214.720 [-2.1874999423992314, 0.00007477796101126867, 3.407036767012855e-16]    -376.73
418: MSE [ 9,  9, 0.02] 20399.540 [-2.156250369087226, -0.00008852487918358495, 3.407036767012855e-16]     184.82
418: EndEvent: [-2.156250369087226, -0.00008852487918358495, 3.407036767012855e-16]
418: RegularStepGradientDescentOptimizer: Maximum number of iterations (10) exceeded.
418: ITK registration complete
418: [2] xf_out->m_type = 1, xf_in->m_type = 0
418: Doing registration stage
418: [1] xf_in->m_type = 1, xf_out->m_type = 0
418: RESAMPLE 1 1: (2 2 2), (2 2 2)
418: RESAMPLE 1 1: (2 2 2), (2 2 2)
418: volume_calc_grad complete.
418: bspline_xform_initialize
418: rdims = (3,5,3)
418: vox_per_rgn = (5,5,5)
418: cdims = (6 8 6)
418: Algorithm flavor = g
418: Threading = 0
418: Regularization: flavor = c lambda = 0.100000
418: Regularizer initialized
418: >> Checking JH allocation
418: BSPLINE PARMS
418: max_its = 5
418: max_feval = 5
418: BSPLINE XFORM HEADER
418: vox_per_rgn = 5 5 5
418: roi_offset = 0 0 0
418: roi_dim = 15 25 15
418: img_dc = 1 0 0 0 1 0 0 0 1
418: BST METRICS
418: MET 110100 MSE 1.000000
418: Setting nmax, mmax = 864 31
418: >>> START     
418: This problem is unconstrained.
418: [ 0,  0] SCORE  17856.865 NV   5250 GM   596.305 GN       997 [     0.055 s ]
418:          MSE    17856.865 RM     0.000 [     0.030 |     0.026 ]
418:          CMIN  -1.00 CAVG  -0.33 CMAX   0.00
418:          LSD   0.00
418: [ 0,  1] SCORE  15761.621 NV   5415 GM  4002.270 GN  1.58e+03 [     0.036 s ]
418:          MSE    15761.603 RM     0.019 [     0.009 |     0.027 ]
418:          CMIN  -1.35 CAVG  -0.33 CMAX   0.11
418:          LSD   1.00
418: [ 0,  2] SCORE  11419.833 NV   5415 GM  3904.956 GN   1.2e+03 [     0.043 s ]
418:          MSE    11419.360 RM     0.473 [     0.021 |     0.022 ]
418:          CMIN  -2.76 CAVG  -0.34 CMAX   0.57
418:          LSD   5.00
418: [ 0,  3] SCORE  11865.492 NV   5349 GM  4432.436 GN  1.31e+03 [     0.053 s ]
418:          MSE    11857.157 RM     8.335 [     0.017 |     0.036 ]
418:          CMIN  -8.39 CAVG  -0.35 CMAX   4.37
418:          LSD  21.00
418: [ 1,  4] SCORE   2624.840 NV   5330 GM  1520.288 GN       405 [     0.045 s ]
418:          MSE     2620.351 RM     4.489 [     0.018 |     0.027 ]
418:          CMIN  -7.51 CAVG  -0.37 CMAX   1.81
418:          LSD   7.90
418: [ 2,  5] SCORE   2070.753 NV   5316 GM -1231.525 GN       432 [     0.038 s ]
418:          MSE     2064.967 RM     5.786 [     0.018 |     0.020 ]
418:          CMIN  -8.62 CAVG  -0.39 CMAX   1.40
418:          LSD   4.35
418: [2] xf_out->m_type = 9, xf_in->m_type = 1
418: Doing registration stage
418: [1] xf_in->m_type = 9, xf_out->m_type = 0
418: RESAMPLE 1 1: (2 2 2), (2 2 2)
418: RESAMPLE 1 1: (2 2 2), (2 2 2)
418: volume_calc_grad complete.
418: bspline_xform_initialize
418: rdims = (3,5,3)
418: vox_per_rgn = (5,5,5)
418: cdims = (6 8 6)
418: Algorithm flavor = g
418: Threading = 0
418: Regularization: flavor = c lambda = 0.100000
418: Regularizer initialized
418: >> Checking JH allocation
418: BSPLINE PARMS
418: max_its = 5
418: max_feval = 5
418: BSPLINE XFORM HEADER
418: vox_per_rgn = 5 5 5
418: roi_offset = 0 0 0
418: roi_dim = 15 25 15
418: img_dc = 1 0 0 0 1 0 0 0 1
418: BST METRICS
418: MET 110100 MSE 1.000000
418: Setting nmax, mmax = 864 31
418: >>> START     
418: This problem is unconstrained.
418: [ 0,  0] SCORE   2070.753 NV   5316 GM -1231.525 GN       432 [     0.023 s ]
418:          MSE     2064.967 RM     5.786 [     0.010 |     0.013 ]
418:          CMIN  -8.62 CAVG  -0.39 CMAX   1.40
418:          LSD   0.00
418: [ 0,  1] SCORE   1741.366 NV   5318 GM  -709.336 GN       291 [     0.019 s ]
418:          MSE     1736.001 RM     5.365 [     0.008 |     0.012 ]
418:          CMIN  -8.13 CAVG  -0.39 CMAX   1.38
418:          LSD   1.00
418: [ 1,  2] SCORE   1448.726 NV   5351 GM   553.138 GN       184 [     0.021 s ]
418:          MSE     1444.063 RM     4.664 [     0.008 |     0.013 ]
418:          CMIN  -7.05 CAVG  -0.38 CMAX   1.33
418:          LSD   2.47
418: [ 2,  3] SCORE   1411.069 NV   5344 GM   258.307 GN      92.3 [     0.033 s ]
418:          MSE     1406.122 RM     4.946 [     0.018 |     0.014 ]
418:          CMIN  -7.20 CAVG  -0.39 CMAX   1.33
418:          LSD   0.62
418: [ 3,  4] SCORE   1391.029 NV   5340 GM  -132.885 GN      63.2 [     0.017 s ]
418:          MSE     1385.782 RM     5.247 [     0.006 |     0.011 ]
418:          CMIN  -7.41 CAVG  -0.39 CMAX   1.30
418:          LSD   0.81
418: [ 4,  5] SCORE   1380.556 NV   5338 GM    21.541 GN      39.1 [     0.017 s ]
418:          MSE     1375.316 RM     5.240 [     0.006 |     0.011 ]
418:          CMIN  -7.42 CAVG  -0.39 CMAX   1.30
418:          LSD   0.36
418: [2] xf_out->m_type = 9, xf_in->m_type = 9
418: Doing registration stage
418: [1] xf_in->m_type = 9, xf_out->m_type = 0
418: RESAMPLE 1 1: (2 2 2), (2 2 2)
418: RESAMPLE 1 1: (2 2 2), (2 2 2)
418: volume_calc_grad complete.
418: bspline_xform_initialize
418: rdims = (3,5,3)
418: vox_per_rgn = (5,5,5)
418: cdims = (6 8 6)
418: Algorithm flavor = g
418: Threading = 0
418: Regularization: flavor = c lambda = 0.100000
418: Regularizer initialized
418: >> Checking JH allocation
418: BSPLINE PARMS
418: max_its = 5
418: max_feval = 5
418: BSPLINE XFORM HEADER
418: vox_per_rgn = 5 5 5
418: roi_offset = 0 0 0
418: roi_dim = 15 25 15
418: img_dc = 1 0 0 0 1 0 0 0 1
418: BST METRICS
418: MET 110100 MSE 1.000000
418: Setting nmax, mmax = 864 31
418: >>> START     
418: This problem is unconstrained.
418: [ 0,  0] SCORE   1380.556 NV   5338 GM    21.541 GN      39.1 [     0.015 s ]
418:          MSE     1375.316 RM     5.240 [     0.006 |     0.009 ]
418:          CMIN  -7.42 CAVG  -0.39 CMAX   1.30
418:          LSD   0.00
418: [ 0,  1] SCORE   1360.810 NV   5336 GM   259.462 GN       115 [     0.017 s ]
418:          MSE     1355.755 RM     5.056 [     0.009 |     0.008 ]
418:          CMIN  -7.23 CAVG  -0.39 CMAX   1.32
418:          LSD   1.00
418: [ 0,  2] SCORE   1363.081 NV   5336 GM   215.275 GN      64.4 [     0.014 s ]
418:          MSE     1357.933 RM     5.148 [     0.006 |     0.008 ]
418:          CMIN  -7.33 CAVG  -0.39 CMAX   1.31
418:          LSD   0.47
418: [ 1,  3] SCORE   1355.968 NV   5336 GM    93.286 GN      47.5 [     0.014 s ]
418:          MSE     1350.760 RM     5.209 [     0.006 |     0.008 ]
418:          CMIN  -7.36 CAVG  -0.39 CMAX   1.31
418:          LSD   0.24
418: [ 2,  4] SCORE   1327.456 NV   5313 GM  -133.711 GN      39.2 [     0.018 s ]
418:          MSE     1321.881 RM     5.575 [     0.011 |     0.008 ]
418:          CMIN  -7.53 CAVG  -0.39 CMAX   1.33
418:          LSD   1.49
418: [ 3,  5] SCORE   1315.612 NV   5295 GM  -129.321 GN      46.1 [     0.017 s ]
418:          MSE     1309.647 RM     5.965 [     0.006 |     0.011 ]
418:          CMIN  -7.65 CAVG  -0.40 CMAX   1.39
418:          LSD   1.60
418: [2] xf_out->m_type = 9, xf_in->m_type = 9
418: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
418: bspline_xform_initialize
418: rdims = (3,5,3)
418: vox_per_rgn = (10,10,10)
418: cdims = (6 8 6)
418: ** Registration worker thread finished.
418: Writing transformation ...
418: Warping...
418: Running: plm_warp_native
418: Converting input image...
418: Converting xform...
418: bspline_xform_initialize
418: rdims = (3,5,3)
418: vox_per_rgn = (10,10,10)
418: cdims = (6 8 6)
418: Creating output vf...
418: Creating output volume...
418: Running native warper...
418: bspline_warp complete.
418: Back convert to original type...
418: > Convert vf to itk
418: > Conversion complete.
418: plm_warp_native is complete.
418: Saving image...
418: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e-img.mha
418: Saving vf...
418: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e-vf.mha
418: Load:   0.0387371
418: Run:    0.662329
418: Save:   0.066819
418: Total:  0.767885
418: Finished!
418: 
418: STDERR: 
418: Not an error
516/571 Test #418: plm-reg-roi-e .........................   Passed    1.07 sec
test 443
        Start 443: plm-compose-a-check

443: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=13.75" "-DUPPER_THRESH=13.85" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
443: Test timeout computed to be: 1500
419: RETVAL: 0
419: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha
419: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha
419: Loading fixed stiffness: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha
419: Launching registration worker thread
419: Inside registration worker thread
419: Doing registration stage
419: [1] xf_in->m_type = 0, xf_out->m_type = 0
419: RESAMPLE 1 1: (2 2 2), (2 2 2)
419: RESAMPLE 1 1: (2 2 2), (2 2 2)
419: volume_calc_grad complete.
419: bspline_xform_initialize
419: Warning: vox_per_rgn was less than 4.
419: Warning: vox_per_rgn was less than 4.
419: Warning: vox_per_rgn was less than 4.
419: rdims = (5,5,5)
419: vox_per_rgn = (4,4,4)
419: cdims = (8 8 8)
419: RESAMPLE 1 1: (2 2 2), (2 2 2)
419: Algorithm flavor = g
419: Threading = 0
419: Regularization: flavor = a lambda = 0.100000
419: >> Checking JH allocation
419: BSPLINE PARMS
419: max_its = 5
419: max_feval = 5
419: BSPLINE XFORM HEADER
419: vox_per_rgn = 4 4 4
419: roi_offset = 0 0 0
419: roi_dim = 19 19 19
419: img_dc = 1 0 0 0 1 0 0 0 1
419: BST METRICS
419: MET 110100 MSE 1.000000
419: Setting nmax, mmax = 1536 41
419: >>> START     
419: This problem is unconstrained.
419: [ 0,  0] SCORE  74227.273 NV   6859 GM     0.000 GN       188 [     0.130 s ]
419:          MSE    74227.273 RM     0.000 [     0.070 |     0.060 ]
419:          CMIN   0.00 CAVG   0.00 CMAX   0.00
419:          LSD   0.00
419: [ 0,  1] SCORE  73948.398 NV   6859 GM     0.045 GN       187 [     0.078 s ]
419:          MSE    73948.391 RM     0.010 [     0.009 |     0.069 ]
419:          CMIN  -0.14 CAVG  -0.00 CMAX   0.15
419:          LSD   1.00
419: [ 0,  2] SCORE  72846.922 NV   6859 GM     0.264 GN       183 [     0.051 s ]
419:          MSE    72846.680 RM     0.242 [     0.006 |     0.045 ]
419:          CMIN  -0.69 CAVG  -0.00 CMAX   0.76
419:          LSD   5.00
419: [ 0,  3] SCORE  68660.922 NV   6859 GM     1.168 GN       166 [     0.048 s ]
419:          MSE    68656.656 RM     4.268 [     0.006 |     0.042 ]
419:          CMIN  -2.91 CAVG  -0.00 CMAX   3.18
419:          LSD  21.00
419: [ 1,  4] SCORE  42095.320 NV   6859 GM   -11.876 GN      58.8 [     0.048 s ]
419:          MSE    41780.070 RM   315.248 [     0.006 |     0.042 ]
419:          CMIN -25.44 CAVG  -0.01 CMAX  25.37
419:          LSD 160.09
419: [ 2,  5] SCORE  33075.488 NV   6859 GM    41.190 GN      77.9 [     0.048 s ]
419:          MSE    32300.393 RM   775.097 [     0.006 |     0.042 ]
419:          CMIN -39.12 CAVG   0.00 CMAX  38.06
419:          LSD 114.34
419: [2] xf_out->m_type = 9, xf_in->m_type = 0
419: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1)
419: bspline_xform_initialize
419: rdims = (5,5,5)
419: vox_per_rgn = (8,8,8)
419: cdims = (8 8 8)
419: ** Registration worker thread finished.
419: Writing transformation ...
419: Warping...
419: Running: plm_warp_native
419: Converting input image...
419: Converting xform...
419: bspline_xform_initialize
419: rdims = (5,5,5)
419: vox_per_rgn = (8,8,8)
419: cdims = (8 8 8)
419: Creating output vf...
419: Creating output volume...
419: Running native warper...
419: bspline_warp complete.
419: Back convert to original type...
419: > Convert vf to itk
419: > Conversion complete.
419: plm_warp_native is complete.
419: Saving image...
419: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a-img.mha
419: Saving vf...
419: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a-vf.mha
419: Load:   0.143512
419: Run:    0.428514
419: Save:   0.111894
419: Total:  0.68392
419: Finished!
419: 
419: STDERR: 
443: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-stats.stdout.txt
443: -- REGEX is Mean: *([-0-9.]*)
443: -- LOWER_THRESH is 13.75
443: -- UPPER_THRESH is 13.85
443: -- PARSED VALUE=|Mean:                13.794     -0.035     -0.034|
443: -- PARSED_VALUE=|13.794|
443: Not an error
517/571 Test #443: plm-compose-a-check ...................   Passed    0.02 sec
test 445
        Start 445: plm-compose-b-warp

445: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b-warp" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
445: Test timeout computed to be: 1500
419: Not an error
518/571 Test #419: plm-reg-stiffness-a ...................   Passed    0.98 sec
test 447
        Start 447: plm-compose-b-check

447: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=13.75" "-DUPPER_THRESH=13.85" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
447: Test timeout computed to be: 1500
445: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
445: PARMS is warp;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha
445: EXPECTED_ERRNO is 
438: RETVAL: 0
438: STDOUT: Loading fixed image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha
438: Loading moving image [0]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha
438: Loading fixed pointset [1]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/sphere-7.fcsv
438: Loading moving image [1]: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha
438: Launching registration worker thread
438: Inside registration worker thread
438: Doing registration stage
438: [1] xf_in->m_type = 0, xf_out->m_type = 0
438: RESAMPLE 1 1: (1 1 1), (1 1 1)
438: RESAMPLE 1 1: (1 1 1), (1 1 1)
438: volume_calc_grad complete.
438: RESAMPLE 1 1: (1 1 1), (1 1 1)
438: volume_calc_grad complete.
438: bspline_xform_initialize
438: Warning: vox_per_rgn was less than 4.
438: Warning: vox_per_rgn was less than 4.
438: Warning: vox_per_rgn was less than 4.
438: rdims = (10,10,10)
438: vox_per_rgn = (4,4,4)
438: cdims = (13 13 13)
438: Algorithm flavor = g
438: Threading = 0
438: >> Checking JH allocation
438: BSPLINE PARMS
438: max_its = 5
438: max_feval = 5
438: BSPLINE XFORM HEADER
438: vox_per_rgn = 4 4 4
438: roi_offset = 0 0 0
438: roi_dim = 38 38 38
438: img_dc = 1 0 0 0 1 0 0 0 1
438: BST METRICS
438: MET 110100 MSE 1.000000
438: MET 010100 PDM 30.000000
438: Setting nmax, mmax = 6591 83
438: >>> START     
438: This problem is unconstrained.
438: [ 0,  0] SCORE   5752.552 NV  54872 GM     5.543 GN      45.1 [     0.027 s ]
438:          MSE     5540.166 PDM    7.0795197          CMIN   0.00 CAVG   0.00 CMAX   0.00
438:          LSD   0.00
438: [ 0,  1] SCORE   5663.708 NV  54872 GM     0.170 GN      43.8 [     0.009 s ]
438:          MSE     5452.803 PDM    7.0301509          CMIN  -0.20 CAVG  -0.00 CMAX   0.16
438:          LSD   1.00
438: [ 0,  2] SCORE   5319.446 NV  54872 GM    -0.447 GN        42 [     0.010 s ]
438:          MSE     5114.376 PDM    6.8356566          CMIN  -1.00 CAVG  -0.00 CMAX   0.78
438:          LSD   5.00
438: [ 0,  3] SCORE   4111.230 NV  54872 GM    -2.786 GN      35.2 [     0.013 s ]
438:          MSE     3928.063 PDM    6.1055741          CMIN  -4.21 CAVG  -0.00 CMAX   3.26
438:          LSD  21.00
438: [ 1,  4] SCORE   1404.270 NV  54872 GM     1.576 GN      10.3 [     0.019 s ]
438:          MSE     1228.705 PDM    5.8521819          CMIN -19.53 CAVG   0.01 CMAX  16.23
438:          LSD  76.08
438: [ 2,  5] SCORE   1282.464 NV  54872 GM    13.580 GN      4.68 [     0.011 s ]
438:          MSE     1058.280 PDM    7.4727950          CMIN -25.04 CAVG   0.01 CMAX  19.49
438:          LSD  32.00
438: [2] xf_out->m_type = 9, xf_in->m_type = 0
438: Warping...
438: Running: plm_warp_native
438: Converting input image...
438: Converting xform...
438: bspline_xform_initialize
438: rdims = (10,10,10)
438: vox_per_rgn = (4,4,4)
438: cdims = (13 13 13)
438: ** Registration worker thread finished.
438: Creating output vf...
438: Creating output volume...
438: Running native warper...
438: bspline_warp complete.
438: Back convert to original type...
438: > Convert vf to itk
438: > Conversion complete.
438: plm_warp_native is complete.
438: Saving image...
438: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a-img.nrrd
438: Saving vf...
438: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a-vf.nrrd
438: Load:   0.075104
438: Run:    0.098371
438: Save:   0.106454
438: Total:  0.279929
438: Finished!
438: 
438: STDERR: 
447: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-stats.stdout.txt
447: -- REGEX is Mean: *([-0-9.]*)
447: -- LOWER_THRESH is 13.75
447: -- UPPER_THRESH is 13.85
447: -- PARSED VALUE=|Mean:                13.794     -0.035     -0.034|
447: -- PARSED_VALUE=|13.794|
447: Not an error
519/571 Test #447: plm-compose-b-check ...................   Passed    0.02 sec
test 449
        Start 449: plm-compose-c-warp

449: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c-warp" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
449: Test timeout computed to be: 1500
449: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
449: PARMS is warp;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha;--output-img;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha
449: EXPECTED_ERRNO is 
441: RETVAL: 0
441: STDOUT: Loading xform (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha)
441: Setting PIH from VF
441: PIH is:
441: Origin = -25.0000 -25.0000 -25.0000
441: Size = 38 38 38
441: Spacing = 1.3158 1.3158 1.3158
441: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
441: Rt_study_warp: Warping m_img
441: plm_warp_itk: xform_to_itk_vf
441: plm_warp_itk: convert_to_itk
441: plm_warp_itk: warping...
441: Rt_study_warp: Saving m_img (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha)
441: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha
441: Rt_study_warp: warp and save ss.
441: Finished!
441: 
441: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
441: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
441: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
441: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
441: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
441: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
441: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
441: 
438: Not an error
520/571 Test #438: plm-reg-point-dmap-a ..................   Passed    0.62 sec
test 451
        Start 451: plm-compose-c-check

451: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=12.5" "-DUPPER_THRESH=12.6" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
451: Test timeout computed to be: 1500
451: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-stats.stdout.txt
451: -- REGEX is Mean: *([-0-9.]*)
451: -- LOWER_THRESH is 12.5
451: -- UPPER_THRESH is 12.6
451: -- PARSED VALUE=|Mean:                12.523     -0.008     -0.008|
451: -- PARSED_VALUE=|12.523|
451: Not an error
521/571 Test #451: plm-compose-c-check ...................   Passed    0.02 sec
test 454
        Start 454: plm-resample-a-check

454: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-879.0" "-DUPPER_THRESH=-878.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
454: Test timeout computed to be: 1500
441: Not an error
522/571 Test #441: plm-compose-a-warp ....................   Passed    0.30 sec
test 457
        Start 457: plm-resample-b-check

457: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-879.0" "-DUPPER_THRESH=-878.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
457: Test timeout computed to be: 1500
454: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a-stats.stdout.txt
454: -- REGEX is AVE *([-0-9.]*)
454: -- LOWER_THRESH is -879.0
454: -- UPPER_THRESH is -878.0
454: -- PARSED VALUE=|MIN -999.857544 AVE -878.686035 MAX -12.873093 NONZERO 6859 NUMVOX 6859|
454: -- PARSED_VALUE=|-878.686035|
454: Not an error
523/571 Test #454: plm-resample-a-check ..................   Passed    0.02 sec
test 460
        Start 460: plm-resample-c-check

460: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=6.67" "-DUPPER_THRESH=6.74" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
460: Test timeout computed to be: 1500
457: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b-stats.stdout.txt
457: -- REGEX is AVE *([-0-9.]*)
457: -- LOWER_THRESH is -879.0
457: -- UPPER_THRESH is -878.0
457: -- PARSED VALUE=|MIN -999.915161 AVE -878.621277 MAX -0.000005 NONZERO 64000 NUMVOX 64000|
457: -- PARSED_VALUE=|-878.621277|
457: Not an error
524/571 Test #457: plm-resample-b-check ..................   Passed    0.03 sec
test 463
        Start 463: plm-scale-a-check

463: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-3.735" "-DUPPER_THRESH=-3.730" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
463: Test timeout computed to be: 1500
460: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-stats.stdout.txt
460: -- REGEX is Mean: *([-0-9.]*)
460: -- LOWER_THRESH is 6.67
460: -- UPPER_THRESH is 6.74
460: -- PARSED VALUE=|Mean:                 6.707     -0.405     -0.405|
460: -- PARSED_VALUE=|6.707|
460: Not an error
525/571 Test #460: plm-resample-c-check ..................   Passed    0.03 sec
test 466
        Start 466: plm-scale-vf-a-check

466: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=4.000" "-DUPPER_THRESH=4.000" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
466: Test timeout computed to be: 1500
463: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a-stats.stdout.txt
463: -- REGEX is AVE *([-0-9.]*)
463: -- LOWER_THRESH is -3.735
463: -- UPPER_THRESH is -3.730
463: -- PARSED VALUE=|MIN -400.000000 AVE -3.732322 MAX 0.000000 NONZERO 512 NUMVOX 54872|
463: -- PARSED_VALUE=|-3.732322|
463: Not an error
526/571 Test #463: plm-scale-a-check .....................   Passed    0.02 sec
test 468
        Start 468: plm-sift-a-check-1

468: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv" "-DREGEX=^p1-1,(.*)" "-DMATCH_STRING=-7.500,7.500,-17.500" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckString.cmake"
468: Test timeout computed to be: 1500
468: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv
468: -- REGEX is ^p1-1,(.*)
468: -- MATCH_STRING is -7.500,7.500,-17.500
468: -- PARSED VALUE=|p1-1,-7.500,7.500,-17.500|
468: -- PARSED_VALUE=|-7.500,7.500,-17.500|
468: -- LENGTH=20
468: -- |-7.500,7.500,-17.500|-7.500,7.500,-17.500|
468: Not an error
527/571 Test #468: plm-sift-a-check-1 ....................   Passed    0.01 sec
test 469
        Start 469: plm-sift-a-check-2

469: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv" "-DREGEX=^p1-1,(.*)" "-DMATCH_STRING=-7.500,7.500,-22.500" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckString.cmake"
469: Test timeout computed to be: 1500
466: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a-stats.stdout.txt
466: -- REGEX is Mean: *([-0-9.]*)
466: -- LOWER_THRESH is 4.000
466: -- UPPER_THRESH is 4.000
466: -- PARSED VALUE=|Mean:                 4.000      0.000      0.000|
466: -- PARSED_VALUE=|4.000|
466: Not an error
528/571 Test #466: plm-scale-vf-a-check ..................   Passed    0.03 sec
test 472
        Start 472: plm-thumbnail-a-check

472: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=76.85" "-DUPPER_THRESH=76.95" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
472: Test timeout computed to be: 1500
469: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv
469: -- REGEX is ^p1-1,(.*)
469: -- MATCH_STRING is -7.500,7.500,-22.500
469: -- PARSED VALUE=|p1-1,-7.500,7.500,-22.500|
469: -- PARSED_VALUE=|-7.500,7.500,-22.500|
469: -- LENGTH=20
469: -- |-7.500,7.500,-22.500|-7.500,7.500,-22.500|
469: Not an error
529/571 Test #469: plm-sift-a-check-2 ....................   Passed    0.02 sec
test 475
        Start 475: plm-thumbnail-b-check

475: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
475: Test timeout computed to be: 1500
472: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a-stats.stdout.txt
472: -- REGEX is AVE *([-0-9.]*)
472: -- LOWER_THRESH is 76.85
472: -- UPPER_THRESH is 76.95
472: -- PARSED VALUE=|MIN 0.000000 AVE 76.906250 MAX 255.000000 NONZERO 88 NUMVOX 256|
472: -- PARSED_VALUE=|76.906250|
472: Not an error
530/571 Test #472: plm-thumbnail-a-check .................   Passed    0.03 sec
test 478
        Start 478: plm-thumbnail-c-check

478: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=8.1" "-DUPPER_THRESH=8.3" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
478: Test timeout computed to be: 1500
475: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b-stats.stdout.txt
475: -- REGEX is AVE *([-0-9.]*)
475: -- LOWER_THRESH is 0.0
475: -- UPPER_THRESH is 0.0
475: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 256|
475: -- PARSED_VALUE=|0.000000|
475: Not an error
531/571 Test #475: plm-thumbnail-b-check .................   Passed    0.01 sec
test 481
        Start 481: plm-intersect-check

481: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=729" "-DUPPER_THRESH=729" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
481: Test timeout computed to be: 1500
481: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect-stats.stdout.txt
481: -- REGEX is NONZERO *([-0-9.]*)
481: -- LOWER_THRESH is 729
481: -- UPPER_THRESH is 729
481: -- PARSED VALUE=|MIN 0.000000 AVE 0.013285 MAX 1.000000 NONZERO 729 NUMVOX 54872|
481: -- PARSED_VALUE=|729|
481: Not an error
532/571 Test #481: plm-intersect-check ...................   Passed    0.02 sec
test 484
        Start 484: plm-union-check

484: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1271" "-DUPPER_THRESH=1271" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
484: Test timeout computed to be: 1500
478: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c-stats.stdout.txt
478: -- REGEX is AVE *([-0-9.]*)
478: -- LOWER_THRESH is 8.1
478: -- UPPER_THRESH is 8.3
478: -- PARSED VALUE=|MIN 0.000000 AVE 8.203125 MAX 119.000000 NONZERO 32 NUMVOX 256|
478: -- PARSED_VALUE=|8.203125|
478: Not an error
533/571 Test #478: plm-thumbnail-c-check .................   Passed    0.03 sec
test 487
        Start 487: plm-threshold-a-check

487: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.306" "-DUPPER_THRESH=0.308" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
487: Test timeout computed to be: 1500
484: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union-stats.stdout.txt
484: -- REGEX is NONZERO *([-0-9.]*)
484: -- LOWER_THRESH is 1271
484: -- UPPER_THRESH is 1271
484: -- PARSED VALUE=|MIN 0.000000 AVE 0.023163 MAX 1.000000 NONZERO 1271 NUMVOX 54872|
484: -- PARSED_VALUE=|1271|
484: Not an error
534/571 Test #484: plm-union-check .......................   Passed    0.01 sec
test 490
        Start 490: plm-threshold-b-check

490: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.670" "-DUPPER_THRESH=0.672" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
490: Test timeout computed to be: 1500
490: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b-stats.stdout.txt
490: -- REGEX is AVE *([-0-9.]*)
490: -- LOWER_THRESH is 0.670
490: -- UPPER_THRESH is 0.672
490: -- PARSED VALUE=|MIN 0.000000 AVE 0.671290 MAX 1.000000 NONZERO 36835 NUMVOX 54872|
490: -- PARSED_VALUE=|0.671290|
490: Not an error
535/571 Test #490: plm-threshold-b-check .................   Passed    0.01 sec
test 493
        Start 493: plm-threshold-c-check

493: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1206" "-DUPPER_THRESH=1206" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
493: Test timeout computed to be: 1500
449: RETVAL: 0
449: STDOUT: Loading xform (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha)
449: Setting PIH from VF
449: PIH is:
449: Origin = -25.0000 -25.0000 -25.0000
449: Size = 38 38 38
449: Spacing = 1.3158 1.3158 1.3158
449: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
449: Rt_study_warp: Warping m_img
449: plm_warp_itk: xform_to_itk_vf
449: plm_warp_itk: convert_to_itk
449: plm_warp_itk: warping...
449: Rt_study_warp: Saving m_img (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha)
449: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha
449: Rt_study_warp: warp and save ss.
449: Finished!
449: 
449: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
449: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
449: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
449: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
449: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
449: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
449: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
449: 
487: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a-stats.stdout.txt
487: -- REGEX is AVE *([-0-9.]*)
487: -- LOWER_THRESH is 0.306
487: -- UPPER_THRESH is 0.308
487: -- PARSED VALUE=|MIN 0.000000 AVE 0.306732 MAX 1.000000 NONZERO 16831 NUMVOX 54872|
487: -- PARSED_VALUE=|0.306732|
487: Not an error
536/571 Test #487: plm-threshold-a-check .................   Passed    0.03 sec
test 494
        Start 494: plm-warp-pointset-a

494: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-pointset-a" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
494: Test timeout computed to be: 1500
493: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c-stats.stdout.txt
493: -- REGEX is NONZERO *([-0-9.]*)
493: -- LOWER_THRESH is 1206
493: -- UPPER_THRESH is 1206
493: -- PARSED VALUE=|MIN 0.000000 AVE 0.021978 MAX 1.000000 NONZERO 1206 NUMVOX 54872|
493: -- PARSED_VALUE=|1206|
493: Not an error
537/571 Test #493: plm-threshold-c-check .................   Passed    0.02 sec
test 495
        Start 495: plm-warp-pointset-b

495: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-pointset-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
495: Test timeout computed to be: 1500
494: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
494: PARMS is warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv
494: EXPECTED_ERRNO is 
495: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
495: PARMS is warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt
495: EXPECTED_ERRNO is 
445: RETVAL: 0
445: STDOUT: Loading xform (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha)
445: Setting PIH from VF
445: PIH is:
445: Origin = -25.0000 -25.0000 -25.0000
445: Size = 38 38 38
445: Spacing = 1.3158 1.3158 1.3158
445: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000
445: Rt_study_warp: Warping m_img
445: plm_warp_itk: xform_to_itk_vf
445: plm_warp_itk: convert_to_itk
445: plm_warp_itk: warping...
445: Rt_study_warp: Saving m_img (/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha)
445: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha
445: Rt_study_warp: warp and save ss.
445: Finished!
445: 
445: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
445: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
445: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
445: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
445: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
445: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
445: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
445: 
449: Not an error
538/571 Test #449: plm-compose-c-warp ....................   Passed    0.29 sec
test 496
        Start 496: plm-warp-pointset-c

496: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-pointset-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
496: Test timeout computed to be: 1500
496: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
496: PARMS is warp;--xf;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv
496: EXPECTED_ERRNO is 
445: Not an error
539/571 Test #445: plm-compose-b-warp ....................   Passed    0.44 sec
test 499
        Start 499: plm-warp-a-check

499: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.77" "-DUPPER_THRESH=5.78" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
499: Test timeout computed to be: 1500
494: RETVAL: 0
494: STDOUT: bspline_xform_initialize
494: rdims = (5,5,5)
494: vox_per_rgn = (8,8,8)
494: cdims = (8 8 8)
494: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv
494: 
494: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
494: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
494: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
494: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
494: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
494: 
499: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-stats.stdout.txt
499: -- REGEX is Mean: *([-0-9.]*)
499: -- LOWER_THRESH is 5.77
499: -- UPPER_THRESH is 5.78
499: -- PARSED VALUE=|Mean:                 5.773      0.002      0.002|
499: -- PARSED_VALUE=|5.773|
499: Not an error
540/571 Test #499: plm-warp-a-check ......................   Passed    0.02 sec
test 502
        Start 502: plm-warp-b-check-1

502: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-1.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.77" "-DUPPER_THRESH=5.78" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
502: Test timeout computed to be: 1500
502: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-1.stdout.txt
502: -- REGEX is Mean: *([-0-9.]*)
502: -- LOWER_THRESH is 5.77
502: -- UPPER_THRESH is 5.78
502: -- PARSED VALUE=|Mean:                 5.773      0.002      0.002|
502: -- PARSED_VALUE=|5.773|
502: Not an error
495: RETVAL: 0
495: STDOUT: bspline_xform_initialize
495: rdims = (5,5,5)
495: vox_per_rgn = (8,8,8)
495: cdims = (8 8 8)
495: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt
495: 
495: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
495: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
495: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
495: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
495: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
495: 
541/571 Test #502: plm-warp-b-check-1 ....................   Passed    0.03 sec
test 504
        Start 504: plm-warp-b-check-2

504: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-775.7" "-DUPPER_THRESH=-775.6" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
504: Test timeout computed to be: 1500
504: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-2.stdout.txt
504: -- REGEX is AVE *([-0-9.]*)
504: -- LOWER_THRESH is -775.7
504: -- UPPER_THRESH is -775.6
504: -- PARSED VALUE=|MIN -999.876892 AVE -775.668274 MAX 0.000000 NONZERO 49099 NUMVOX 54872|
504: -- PARSED_VALUE=|-775.668274|
504: Not an error
542/571 Test #504: plm-warp-b-check-2 ....................   Passed    0.02 sec
test 507
        Start 507: plm-warp-c-check

507: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=9.2" "-DUPPER_THRESH=9.3" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
507: Test timeout computed to be: 1500
507: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-stats.stdout.txt
507: -- REGEX is AVE *([-0-9.]*)
507: -- LOWER_THRESH is 9.2
507: -- UPPER_THRESH is 9.3
507: -- PARSED VALUE=|MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872|
507: -- PARSED_VALUE=|9.220003|
507: Not an error
543/571 Test #507: plm-warp-c-check ......................   Passed    0.02 sec
test 510
        Start 510: plm-warp-d-check

510: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=9.2" "-DUPPER_THRESH=9.3" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
510: Test timeout computed to be: 1500
494: Not an error
544/571 Test #494: plm-warp-pointset-a ...................   Passed    0.28 sec
test 513
        Start 513: plm-warp-f-check-1

513: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-stats-1.stdout.txt" "-DREGEX=Direction = *[-0-9.]* *[-0-9.]* *([-0-9.]*)" "-DLOWER_THRESH=-0.379" "-DUPPER_THRESH=-0.378" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
513: Test timeout computed to be: 1500
513: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-stats-1.stdout.txt
513: -- REGEX is Direction = *[-0-9.]* *[-0-9.]* *([-0-9.]*)
513: -- LOWER_THRESH is -0.379
513: -- UPPER_THRESH is -0.378
513: -- PARSED VALUE=|Direction = 0.9254 0.0180 -0.3785 0.1632 0.8826 0.4410 0.3420 -0.4698 0.8138|
513: -- PARSED_VALUE=|-0.3785|
513: Not an error
545/571 Test #513: plm-warp-f-check-1 ....................   Passed    0.02 sec
test 516
        Start 516: plm-warp-g-check-1

516: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-764.0" "-DUPPER_THRESH=-763.6" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
516: Test timeout computed to be: 1500
510: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-stats.stdout.txt
510: -- REGEX is AVE *([-0-9.]*)
510: -- LOWER_THRESH is 9.2
510: -- UPPER_THRESH is 9.3
510: -- PARSED VALUE=|MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872|
510: -- PARSED_VALUE=|9.220003|
510: Not an error
546/571 Test #510: plm-warp-d-check ......................   Passed    0.03 sec
test 519
        Start 519: plm-warp-h-check-1

519: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=113.5" "-DUPPER_THRESH=114.0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
519: Test timeout computed to be: 1500
496: RETVAL: 0
496: STDOUT: Trying to save: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv
496: 
496: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
496: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
496: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
496: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
496: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
496: 
516: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-stats-1.stdout.txt
516: -- REGEX is AVE *([-0-9.]*)
516: -- LOWER_THRESH is -764.0
516: -- UPPER_THRESH is -763.6
516: -- PARSED VALUE=|MIN -1000.000000 AVE -763.820862 MAX 0.000000 NONZERO 42085 NUMVOX 54872|
516: -- PARSED_VALUE=|-763.820862|
516: Not an error
547/571 Test #516: plm-warp-g-check-1 ....................   Passed    0.02 sec
test 522
        Start 522: plm-warp-i-check-1

522: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=114.4" "-DUPPER_THRESH=114.7" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
522: Test timeout computed to be: 1500
519: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-stats-1.stdout.txt
519: -- REGEX is AVE *([-0-9.]*)
519: -- LOWER_THRESH is 113.5
519: -- UPPER_THRESH is 114.0
519: -- PARSED VALUE=|MIN 0.000000 AVE 113.750511 MAX 996.000000 NONZERO 42867 NUMVOX 54872|
519: -- PARSED_VALUE=|113.750511|
519: Not an error
548/571 Test #519: plm-warp-h-check-1 ....................   Passed    0.03 sec
test 525
        Start 525: plm-xf-convert-c

525: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
525: Test timeout computed to be: 1500
522: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-stats-1.stdout.txt
522: -- REGEX is AVE *([-0-9.]*)
522: -- LOWER_THRESH is 114.4
522: -- UPPER_THRESH is 114.7
522: -- PARSED VALUE=|MIN 0.000000 AVE 114.545189 MAX 996.552368 NONZERO 43320 NUMVOX 54872|
522: -- PARSED_VALUE=|114.545189|
522: Not an error
549/571 Test #522: plm-warp-i-check-1 ....................   Passed    0.02 sec
test 529
        Start 529: plm-xf-convert-d-warp-1-check

529: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-745.8" "-DUPPER_THRESH=-744.8" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
529: Test timeout computed to be: 1500
529: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1-stats.stdout.txt
529: -- REGEX is AVE *([-0-9.]*)
529: -- LOWER_THRESH is -745.8
529: -- UPPER_THRESH is -744.8
529: -- PARSED VALUE=|MIN -999.979248 AVE -745.231567 MAX 0.000000 NONZERO 5851 NUMVOX 6859|
529: -- PARSED_VALUE=|-745.231567|
529: Not an error
550/571 Test #529: plm-xf-convert-d-warp-1-check .........   Passed    0.02 sec
test 532
        Start 532: plm-xf-convert-d-warp-2-check

532: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-751.0" "-DUPPER_THRESH=-744.8" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
532: Test timeout computed to be: 1500
525: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
525: PARMS is xf-convert;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125
525: EXPECTED_ERRNO is 
495: Not an error
496: Not an error
551/571 Test #495: plm-warp-pointset-b ...................   Passed    0.37 sec
test 533
        Start 533: plm-xf-convert-e

533: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-e" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e;--fixed-rcs;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--moving-rcs;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
533: Test timeout computed to be: 1500
552/571 Test #496: plm-warp-pointset-c ...................   Passed    0.31 sec
test 534
        Start 534: plm-xf-convert-f

534: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-f" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f;--fixed-image;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--moving-image;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
534: Test timeout computed to be: 1500
532: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2-stats.stdout.txt
532: -- REGEX is AVE *([-0-9.]*)
532: -- LOWER_THRESH is -751.0
532: -- UPPER_THRESH is -744.8
532: -- PARSED VALUE=|MIN -999.991089 AVE -748.668152 MAX 0.000000 NONZERO 46980 NUMVOX 54872|
532: -- PARSED_VALUE=|-748.668152|
532: Not an error
553/571 Test #532: plm-xf-convert-d-warp-2-check .........   Passed    0.03 sec
test 535
        Start 535: plm-xf-convert-g

535: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-g" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g;--fixed-rcs;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--moving-rcs;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
535: Test timeout computed to be: 1500
533: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
533: PARMS is xf-convert;--filenames-without-uids;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e;--fixed-rcs;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--moving-rcs;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom
533: EXPECTED_ERRNO is 
534: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
534: PARMS is xf-convert;--filenames-without-uids;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f;--fixed-image;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--moving-image;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha
534: EXPECTED_ERRNO is 
535: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
535: PARMS is xf-convert;--filenames-without-uids;--input;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd;--output-dicom;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g;--fixed-rcs;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--moving-rcs;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom
535: EXPECTED_ERRNO is 
525: RETVAL: 0
525: STDOUT: bspline_xform_initialize
525: rdims = (1,1,1)
525: vox_per_rgn = (4,4,4)
525: cdims = (4 4 4)
525: about to xform_convert
525: Converting to (itk) vector field
525: did xform_convert
525: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha
525: 
525: STDERR: 
525: Not an error
554/571 Test #525: plm-xf-convert-c ......................   Passed    0.28 sec
test 538
        Start 538: plm-xf-convert-h-check

538: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h-stats.stdout.txt" "-DREGEX=Min: *([-0-9.]*)" "-DLOWER_THRESH=20" "-DUPPER_THRESH=20" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
538: Test timeout computed to be: 1500
538: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h-stats.stdout.txt
538: -- REGEX is Min: *([-0-9.]*)
538: -- LOWER_THRESH is 20
538: -- UPPER_THRESH is 20
538: -- PARSED VALUE=|Min:                 20.000      0.000      0.000|
538: -- PARSED_VALUE=|20.000|
538: Not an error
555/571 Test #538: plm-xf-convert-h-check ................   Passed    0.03 sec
test 541
        Start 541: xf-invert-vf-zero-1-check

541: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=0.000" "-DUPPER_THRESH=0.000" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
541: Test timeout computed to be: 1500
541: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1-stats.stdout.txt
541: -- REGEX is Mean abs: *([-0-9.]*)
541: -- LOWER_THRESH is 0.000
541: -- UPPER_THRESH is 0.000
541: -- PARSED VALUE=|Mean abs:             0.000      0.000      0.000|
541: -- PARSED_VALUE=|0.000|
541: Not an error
556/571 Test #541: xf-invert-vf-zero-1-check .............   Passed    0.03 sec
test 544
        Start 544: xf-invert-vf-trans-1-check

544: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-10.0" "-DUPPER_THRESH=-9.9" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
544: Test timeout computed to be: 1500
533: RETVAL: 0
533: STDOUT: Loading fixed...
533: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3360901.1640785961.58351RTDOSE
533: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3360901.1640785961.58351RTSTRUCT
533: Found DCM_ReferencedFrameOfReferenceSequence!
533: Found DCM_RTReferencedStudySequence!
533: Trying to load rt structure set.
533: Adding structure (1), Foreground
533: Structure 1 has color 255\0\0
533: Trying to load rt dose.
533: Load: DoseGridScaling = 0.000000
533: RTDOSE: dim = 38 38 38
533:   ipp = -243.421005 -243.421005 -243.421005
533:   spc = 13.157900 13.157900 13.157900
533:   dc  = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000
533: Bits_alloc: 32
533: Bits_stored: 32
533: High_bit: 31
533: Pixel_rep: 0
533: rc = 1, length = 109744, npix = 54872
533: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3360901.1640785961.58351RTDOSE
533: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3360901.1640785961.58351RTSTRUCT
533: Found DCM_ReferencedFrameOfReferenceSequence!
533: Found DCM_RTReferencedStudySequence!
533: Trying to load rt structure set.
533: Adding structure (1), Foreground
533: Structure 1 has color 255\0\0
533: Trying to load rt dose.
533: Load: DoseGridScaling = 0.000000
533: RTDOSE: dim = 38 38 38
533:   ipp = -243.421005 -243.421005 -243.421005
533:   spc = 13.157900 13.157900 13.157900
533:   dc  = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000
533: Bits_alloc: 32
533: Bits_stored: 32
533: High_bit: 31
533: Pixel_rep: 0
533: rc = 1, length = 109744, npix = 54872
533: Loading moving...
533: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3359049.1640785961.22482RTDOSE
533: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3359049.1640785961.22482RTSTRUCT
533: Found DCM_ReferencedFrameOfReferenceSequence!
533: Found DCM_RTReferencedStudySequence!
533: Trying to load rt structure set.
533: Adding structure (1), Foreground
533: Structure 1 has color 255\0\0
533: Trying to load rt dose.
533: Load: DoseGridScaling = 0.000000
533: RTDOSE: dim = 38 38 38
533:   ipp = -243.421005 -243.421005 -243.421005
533:   spc = 13.157900 13.157900 13.157900
533:   dc  = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000
533: Bits_alloc: 32
533: Bits_stored: 32
533: High_bit: 31
533: Pixel_rep: 0
533: rc = 1, length = 109744, npix = 54872
533: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3359049.1640785961.22482RTDOSE
533: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3359049.1640785961.22482RTSTRUCT
533: Found DCM_ReferencedFrameOfReferenceSequence!
533: Found DCM_RTReferencedStudySequence!
533: Trying to load rt structure set.
533: Adding structure (1), Foreground
533: Structure 1 has color 255\0\0
533: Trying to load rt dose.
533: Load: DoseGridScaling = 0.000000
533: RTDOSE: dim = 38 38 38
533:   ipp = -243.421005 -243.421005 -243.421005
533:   spc = 13.157900 13.157900 13.157900
533:   dc  = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000
533: Bits_alloc: 32
533: Bits_stored: 32
533: High_bit: 31
533: Pixel_rep: 0
533: rc = 1, length = 109744, npix = 54872
533: Saving sro
533: ITK_AFF_OFF
533: 20.000000 0.000000 0.000000
533: SRO
533: 1.000000\0.000000\0.000000\-20.000000\0.000000\1.000000\0.000000\-0.000000\0.000000\0.000000\1.000000\-0.000000\0.0\0.0\0.0\1.0
533: Trying to save SRO: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e/sro.dcm
533: Done saving sro
533: 
533: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
533: 
544: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1-stats.stdout.txt
544: -- REGEX is Mean: *([-0-9.]*)
544: -- LOWER_THRESH is -10.0
544: -- UPPER_THRESH is -9.9
544: -- PARSED VALUE=|Mean:                -9.999      0.000      0.000|
544: -- PARSED_VALUE=|-9.999|
544: Not an error
557/571 Test #544: xf-invert-vf-trans-1-check ............   Passed    0.03 sec
test 546
        Start 546: xf-invert-vrs-a-check

546: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm" "-DREGEX=^Parameters: *(.*)$" "-DMATCH_STRING=0 0 0 -20 0 0" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckString.cmake"
546: Test timeout computed to be: 1500
546: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm
546: -- REGEX is ^Parameters: *(.*)$
546: -- MATCH_STRING is 0 0 0 -20 0 0
546: -- PARSED VALUE=|Parameters: 0 0 0 -20 0 0|
546: -- PARSED_VALUE=|0 0 0 -20 0 0|
546: -- LENGTH=13
546: -- |0 0 0 -20 0 0|0 0 0 -20 0 0|
546: Not an error
558/571 Test #546: xf-invert-vrs-a-check .................   Passed    0.03 sec
test 548
        Start 548: xf-invert-vrs-b-check

548: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm" "-DREGEX=^Parameters: *([-0-9.]*) *0 *0 *0 *0 *0 *$" "-DLOWER_THRESH=-0.52361" "-DUPPER_THRESH=-0.52359" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
548: Test timeout computed to be: 1500
534: RETVAL: 0
534: STDOUT: Loading fixed...
534: Loading moving...
534: Saving sro
534: ITK_AFF_OFF
534: 20.000000 0.000000 0.000000
534: SRO
534: 1.000000\0.000000\0.000000\-20.000000\0.000000\1.000000\0.000000\-0.000000\0.000000\0.000000\1.000000\-0.000000\0.0\0.0\0.0\1.0
534: Trying to save SRO: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f/sro.dcm
534: Done saving sro
534: 
534: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
534: 
533: Not an error
559/571 Test #533: plm-xf-convert-e ......................   Passed    0.36 sec
test 551
        Start 551: proton-dose-1-check

551: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.140" "-DUPPER_THRESH=0.145" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
551: Test timeout computed to be: 1500
548: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm
548: -- REGEX is ^Parameters: *([-0-9.]*) *0 *0 *0 *0 *0 *$
548: -- LOWER_THRESH is -0.52361
548: -- UPPER_THRESH is -0.52359
548: -- PARSED VALUE=|Parameters: -0.5236 0 0 0 0 0|
548: -- PARSED_VALUE=|-0.5236|
548: Not an error
560/571 Test #548: xf-invert-vrs-b-check .................   Passed    0.03 sec
test 554
        Start 554: proton-dose-4a-check

554: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
554: Test timeout computed to be: 1500
551: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1-stats.stdout.txt
551: -- REGEX is AVE *([-0-9.]*)
551: -- LOWER_THRESH is 0.140
551: -- UPPER_THRESH is 0.145
551: -- PARSED VALUE=|MIN 0.000000 AVE 0.143515 MAX 70.000000 NONZERO 775 NUMVOX 216000|
551: -- PARSED_VALUE=|0.143515|
551: Not an error
561/571 Test #551: proton-dose-1-check ...................   Passed    0.03 sec
test 557
        Start 557: proton-dose-4d-check

557: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.38" "-DUPPER_THRESH=0.39" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
557: Test timeout computed to be: 1500
535: RETVAL: 0
535: STDOUT: Loading fixed...
535: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3359049.1640785961.22482RTDOSE
535: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3359049.1640785961.22482RTSTRUCT
535: Found DCM_ReferencedFrameOfReferenceSequence!
535: Found DCM_RTReferencedStudySequence!
535: Trying to load rt structure set.
535: Adding structure (1), Foreground
535: Structure 1 has color 255\0\0
535: Trying to load rt dose.
535: Load: DoseGridScaling = 0.000000
535: RTDOSE: dim = 38 38 38
535:   ipp = -243.421005 -243.421005 -243.421005
535:   spc = 13.157900 13.157900 13.157900
535:   dc  = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000
535: Bits_alloc: 32
535: Bits_stored: 32
535: High_bit: 31
535: Pixel_rep: 0
535: rc = 1, length = 109744, npix = 54872
535: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3359049.1640785961.22482RTDOSE
535: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3359049.1640785961.22482RTSTRUCT
535: Found DCM_ReferencedFrameOfReferenceSequence!
535: Found DCM_RTReferencedStudySequence!
535: Trying to load rt structure set.
535: Adding structure (1), Foreground
535: Structure 1 has color 255\0\0
535: Trying to load rt dose.
535: Load: DoseGridScaling = 0.000000
535: RTDOSE: dim = 38 38 38
535:   ipp = -243.421005 -243.421005 -243.421005
535:   spc = 13.157900 13.157900 13.157900
535:   dc  = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000
535: Bits_alloc: 32
535: Bits_stored: 32
535: High_bit: 31
535: Pixel_rep: 0
535: rc = 1, length = 109744, npix = 54872
535: Loading moving...
535: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3360901.1640785961.58351RTDOSE
535: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3360901.1640785961.58351RTSTRUCT
535: Found DCM_ReferencedFrameOfReferenceSequence!
535: Found DCM_RTReferencedStudySequence!
535: Trying to load rt structure set.
535: Adding structure (1), Foreground
535: Structure 1 has color 255\0\0
535: Trying to load rt dose.
535: Load: DoseGridScaling = 0.000000
535: RTDOSE: dim = 38 38 38
535:   ipp = -243.421005 -243.421005 -243.421005
535:   spc = 13.157900 13.157900 13.157900
535:   dc  = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000
535: Bits_alloc: 32
535: Bits_stored: 32
535: High_bit: 31
535: Pixel_rep: 0
535: rc = 1, length = 109744, npix = 54872
535: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3360901.1640785961.58351RTDOSE
535: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.313262592.3360901.1640785961.58351RTSTRUCT
535: Found DCM_ReferencedFrameOfReferenceSequence!
535: Found DCM_RTReferencedStudySequence!
535: Trying to load rt structure set.
535: Adding structure (1), Foreground
535: Structure 1 has color 255\0\0
535: Trying to load rt dose.
535: Load: DoseGridScaling = 0.000000
535: RTDOSE: dim = 38 38 38
535:   ipp = -243.421005 -243.421005 -243.421005
535:   spc = 13.157900 13.157900 13.157900
535:   dc  = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000
535: Bits_alloc: 32
535: Bits_stored: 32
535: High_bit: 31
535: Pixel_rep: 0
535: rc = 1, length = 109744, npix = 54872
535: Saving sro
535: Trying to save SRO: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g/dro.dcm
535: Done saving sro
535: 
535: STDERR: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: W: Truncated UID in dcmGenerateUniqueIdentifier(), SITE_UID_ROOT too long?
535: 
554: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a-stats.stdout.txt
554: -- REGEX is AVE *([-0-9.]*)
554: -- LOWER_THRESH is 0.26
554: -- UPPER_THRESH is 0.27
554: -- PARSED VALUE=|MIN 0.000000 AVE 0.266114 MAX 100.000000 NONZERO 932 NUMVOX 216000|
554: -- PARSED_VALUE=|0.266114|
554: Not an error
562/571 Test #554: proton-dose-4a-check ..................   Passed    0.03 sec
test 560
        Start 560: proton-dose-5a-check

560: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
560: Test timeout computed to be: 1500
534: Not an error
563/571 Test #534: plm-xf-convert-f ......................   Passed    0.42 sec
test 563
        Start 563: proton-dose-5d-check

563: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.38" "-DUPPER_THRESH=0.39" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
563: Test timeout computed to be: 1500
557: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d-stats.stdout.txt
557: -- REGEX is AVE *([-0-9.]*)
557: -- LOWER_THRESH is 0.38
557: -- UPPER_THRESH is 0.39
557: -- PARSED VALUE=|MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000|
557: -- PARSED_VALUE=|0.386816|
557: Not an error
564/571 Test #557: proton-dose-4d-check ..................   Passed    0.03 sec
test 566
        Start 566: proton-dose-6a-check

566: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing/PlmCheckInterval.cmake"
566: Test timeout computed to be: 1500
560: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a-stats.stdout.txt
560: -- REGEX is AVE *([-0-9.]*)
560: -- LOWER_THRESH is 0.26
560: -- UPPER_THRESH is 0.27
560: -- PARSED VALUE=|MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000|
560: -- PARSED_VALUE=|0.266122|
560: Not an error
565/571 Test #560: proton-dose-5a-check ..................   Passed    0.03 sec
test 568
        Start 568: proton-dose-8d-stats

568: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-8d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
568: Test timeout computed to be: 1500
563: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-stats.stdout.txt
563: -- REGEX is AVE *([-0-9.]*)
563: -- LOWER_THRESH is 0.38
563: -- UPPER_THRESH is 0.39
563: -- PARSED VALUE=|MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000|
563: -- PARSED_VALUE=|0.386816|
563: Not an error
566/571 Test #563: proton-dose-5d-check ..................   Passed    0.03 sec
test 570
        Start 570: wed-b

570: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=wed-b" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=wed;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-b.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
570: Test timeout computed to be: 1500
566: -- INFILE is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a-stats.stdout.txt
566: -- REGEX is AVE *([-0-9.]*)
566: -- LOWER_THRESH is 0.26
566: -- UPPER_THRESH is 0.27
566: -- PARSED VALUE=|MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000|
566: -- PARSED_VALUE=|0.266122|
566: Not an error
567/571 Test #566: proton-dose-6a-check ..................   Passed    0.03 sec
test 571
        Start 571: wed-c

571: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=wed-c" "-DPLM_TEST_COMMAND=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=wed;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-c.txt" "-P" "/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/cmake/RUN_CTEST.cmake"
571: Test timeout computed to be: 1500
568: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
568: PARMS is stats;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha
568: EXPECTED_ERRNO is 
570: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
570: PARMS is wed;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-b.txt
570: EXPECTED_ERRNO is 
571: PLM_TEST_COMMAND is /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/plastimatch
571: PARMS is wed;--command-file;/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-c.txt
571: EXPECTED_ERRNO is 
535: Not an error
568/571 Test #535: plm-xf-convert-g ......................   Passed    0.49 sec
568: RETVAL: 0
568: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 216000
568: 
568: STDERR: 
568: Not an error
569/571 Test #568: proton-dose-8d-stats ..................   Passed    0.34 sec
571: RETVAL: 0
571: STDOUT: Loading rpl
571: -> /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha
571: -> /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha-> /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha.projv
571: Error opening /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha.projv for readCouldn't open /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha.nrrd for read
571: Done.
571: Skin file defined.  Modifying input ct...
571: FPD = 320.500029, BPD = 821.195355
571: 100 100 501 
571: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-c-dew-ct.mha
571: 
571: STDERR: 
571: Not an error
570/571 Test #571: wed-c .................................   Passed    1.60 sec
570: RETVAL: 0
570: STDOUT: Loading rpl
570: -> /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.rpl
570: -> /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed-> /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.projv
570: Error loading projv file
570: image_dim=100 100
570: Done.
570: Skin file defined.  Modifying input ct...
570: FPD = 320.500029, BPD = 821.195355
570: 100 100 501 
570: Computing wed ct volume...
570: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-b-wed-ct.mha
570: done.
570: 100 100 501 
570: Trying to write image to /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-b-proj-ct.nrrd
570: 
570: STDERR: 
570: Not an error
571/571 Test #570: wed-b .................................   Passed    5.37 sec

100% tests passed, 0 tests failed out of 571

Total Test time (real) =  55.49 sec
make[2]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make[1]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1'
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   debian/rules override_dh_auto_install
make[1]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1'
dh_auto_install
	cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/plastimatch-8jIeZE/plastimatch-1.9.3\+dfsg.1/debian/plastimatch AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[2]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1 -B/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 preinstall
make[3]: Entering directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
make[3]: Nothing to be done for 'preinstall'.
make[3]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "RELEASE"
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/share/doc/plastimatch/README.TXT
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/share/doc/plastimatch/COPYRIGHT.TXT
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/liblbfgs.a
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libdevillard.a
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libinih.a
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libspecfun.a
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libnkidecompress.a
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends.cmake
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends-release.cmake
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfig.cmake
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfigVersion.cmake
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libplmbase.so.1.9
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libplmbase.so
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmbase_config.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/aperture.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/astroid_dose.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/beam_geometry.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_header.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_interpolate.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_warp.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform_legacy.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/clamp.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_extract.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_io.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_probe.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_util.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_cosines.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_matrices.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/float_pair_list.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/gaussian.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io_p.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_stats.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate_macros.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkAndConstantToImageFilter.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkClampCastImageFilter.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_bbox.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_directions.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_accumulate.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_cast.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_clone.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_create.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_header_compare.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_load.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_origin.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_region.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_save.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_shift_scale.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_stats.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_type.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_metadata.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_point.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_pointset.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_resample.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_volume_header.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_warp.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/make_string.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/mc_dose.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/metadata.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/mha_io.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/nki_io.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/parameter_parser.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_file_format.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_p.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_header.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_set.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_type.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_itk.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_uid_prefix.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_warp.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset_warp.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image_dir.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_matrix.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_volume.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/pwlut.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterize_slice.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterizer.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/raw_pointset.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_data.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_callback.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_probe.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume_lut.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_p.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_metadata.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_contour.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_roi.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_beam.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_control_pt.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/segmentation.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_extract.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_list.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_img_extract.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_list_io.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/threading.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/thumbnail.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_convolve.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_jacobian.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_stats.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_behavior.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_conv.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_fill.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_gaussian.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_grad.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_header.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_limit.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_macros.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_resample.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_stats.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_convert.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_legacy.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_point.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct_transform.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_demographic.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dir.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dose.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_patient.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_plan.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_structures.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_studyset.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm_p.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_config.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_file.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_metadata.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_module.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rdd.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtdose.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtss.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtplan.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study_p.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series_map.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_sro.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_uid.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_util.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libplmsys.so.1.9
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libplmsys.so
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_config.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmsys_config.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/compiler_warnings.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dir_list.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/double_align8.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dlib_threads.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/file_util.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/logfile.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/option_range.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/path_util.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_endian.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_exception.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_fwrite.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_int.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_macros.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_math.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_return_code.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_sleep.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer_p.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_va_copy.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/print_and_exit.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/smart_pointer.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/string_util.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload_legacy.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libplmutil.so.1.9
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libplmutil.so
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmutil_config.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dice_statistics.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dvh.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/gamma_dose_comparison.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/geometry_chooser.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/hausdorff_distance.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_boundary.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_center.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_adjust.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_histogram_matching.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_intersect.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_local_intensity_correction.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_union.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_warp.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_adjust.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_type.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xf_invert.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/zcrop.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/gabor.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ramp_filter.h
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/bin/plastimatch
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libplmdose.so.1.9
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libplmdose.so
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libplmreconstruct.so.1.9
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libplmreconstruct.so
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libplmregister.so.1.9
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libplmregister.so
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libplmsegment.so.1.9
-- Installing: /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libplmsegment.so
make[2]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/obj-x86_64-linux-gnu'
rm -rfv /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/*.a
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libdevillard.a'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libinih.a'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/liblbfgs.a'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libnkidecompress.a'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/libspecfun.a'
rm -rfv /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends.cmake'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends-release.cmake'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfig.cmake'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfigVersion.cmake'
removed directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch'
removed directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/lib/cmake'
rm -rfv /build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmbase_config.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/aperture.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/astroid_dose.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/beam_geometry.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_header.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_interpolate.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_warp.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform_legacy.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/clamp.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_extract.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_io.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_probe.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_util.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_cosines.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_matrices.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/float_pair_list.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/gaussian.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io_p.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_stats.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate_macros.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkAndConstantToImageFilter.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkClampCastImageFilter.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_bbox.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_directions.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_accumulate.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_cast.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_clone.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_create.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_header_compare.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_load.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_origin.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_region.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_save.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_shift_scale.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_stats.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_type.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_metadata.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_point.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_pointset.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_resample.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_volume_header.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_warp.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/make_string.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/mc_dose.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/metadata.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/mha_io.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/nki_io.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/parameter_parser.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_file_format.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_p.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_header.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_set.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_type.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_itk.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_uid_prefix.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_warp.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset_warp.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image_dir.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_matrix.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_volume.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/pwlut.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterize_slice.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterizer.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/raw_pointset.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_data.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_callback.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_probe.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume_lut.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_p.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_metadata.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_contour.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_roi.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_beam.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_control_pt.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/segmentation.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_extract.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_list.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_img_extract.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_list_io.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/threading.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/thumbnail.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_convolve.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_jacobian.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_stats.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_behavior.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_conv.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_fill.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_gaussian.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_grad.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_header.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_limit.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_macros.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_resample.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_stats.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_convert.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_legacy.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_point.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct_transform.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_demographic.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dir.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dose.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_patient.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_plan.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_structures.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_studyset.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm_p.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_config.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_file.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_metadata.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_module.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rdd.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtdose.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtss.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtplan.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study_p.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_sro.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series_map.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_uid.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_util.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_config.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmsys_config.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/compiler_warnings.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dir_list.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/double_align8.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dlib_threads.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/file_util.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/logfile.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/option_range.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/path_util.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_endian.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_exception.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_fwrite.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_int.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_macros.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_math.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_return_code.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_sleep.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer_p.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_va_copy.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/print_and_exit.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/smart_pointer.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/string_util.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload_legacy.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmutil_config.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dice_statistics.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/dvh.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/gamma_dose_comparison.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/geometry_chooser.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/hausdorff_distance.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_boundary.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_center.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_adjust.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_histogram_matching.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_intersect.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_local_intensity_correction.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_union.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_warp.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_adjust.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_type.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/xf_invert.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/zcrop.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/gabor.h'
removed '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch/ramp_filter.h'
removed directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include/plastimatch'
removed directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1/debian/plastimatch/usr/include'
make[1]: Leaving directory '/build/plastimatch-8jIeZE/plastimatch-1.9.3+dfsg.1'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installman -a
   dh_lintian -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead
dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead
dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'plastimatch-dbgsym' in '../plastimatch-dbgsym_1.9.3+dfsg.1-2_amd64.deb'.
dpkg-deb: building package 'plastimatch' in '../plastimatch_1.9.3+dfsg.1-2_amd64.deb'.
 dpkg-genbuildinfo --build=any -O../plastimatch_1.9.3+dfsg.1-2_amd64.buildinfo
 dpkg-genchanges --build=any -O../plastimatch_1.9.3+dfsg.1-2_amd64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: running special hook: sync-out /build/plastimatch-8jIeZE /tmp/plastimatch-1.9.3+dfsg.1-27be2bfjj
I: cleaning package lists and apt cache...
I: creating tarball...
I: done
I: removing tempdir /tmp/mmdebstrap.J2S6TnEGBK...
I: success in 3233.7263 seconds
md5: plastimatch-dbgsym_1.9.3+dfsg.1-2_amd64.deb: OK
md5: plastimatch_1.9.3+dfsg.1-2_amd64.deb: OK
sha1: plastimatch-dbgsym_1.9.3+dfsg.1-2_amd64.deb: OK
sha1: plastimatch_1.9.3+dfsg.1-2_amd64.deb: OK
sha256: plastimatch-dbgsym_1.9.3+dfsg.1-2_amd64.deb: OK
sha256: plastimatch_1.9.3+dfsg.1-2_amd64.deb: OK
Checksums: OK