Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/plast/plast_2.3.2+dfsg-8+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/plast-2.3.2+dfsg-8+b1_skczt2s/plast_2.3.2+dfsg-8+b1_amd64.buildinfo Get source package info: plast=2.3.2+dfsg-8 Source URL: http://snapshot.notset.fr/mr/package/plast/2.3.2+dfsg-8/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.37.90.20220123-2 binutils-common=2.37.90.20220123-2 binutils-x86-64-linux-gnu=2.37.90.20220123-2 bsdextrautils=2.37.3-1 bsdutils=1:2.37.3-1 build-essential=12.9 bzip2=1.0.8-5 ca-certificates=20211016 ca-certificates-java=20190909 cmake=3.22.1-1+b1 cmake-data=3.22.1-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-14 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.7-0.1 default-jdk=2:1.11-72 default-jdk-headless=2:1.11-72 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-2 findutils=4.8.0-1 fontconfig-config=2.13.1-4.3 fonts-dejavu-core=2.37-2 g++=4:11.2.0-2 g++-11=11.2.0-14 gcc=4:11.2.0-2 gcc-11=11.2.0-14 gcc-11-base=11.2.0-14 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 java-common=0.72 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libarchive13=3.5.2-1 libasan6=11.2.0-14 libasound2=1.2.6.1-1 libasound2-data=1.2.6.1-1 libatomic1=11.2.0-14 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libbinutils=2.37.90.20220123-2 libblkid1=2.37.3-1 libbrotli1=1.0.9-2+b3 libbsd0=0.11.5-1+b1 libbz2-1.0=1.0.8-5 libc-bin=2.33-4 libc-dev-bin=2.33-4 libc6=2.33-4 libc6-dev=2.33-4 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-14 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.37.90.20220123-2 libctf0=2.37.90.20220123-2 libcups2=2.3.3op2-7 libcurl4=7.81.0-1 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.12.20-3 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdpkg-perl=1.21.1 libdrm-amdgpu1=2.4.109-2 libdrm-common=2.4.109-2 libdrm-intel1=2.4.109-2 libdrm-nouveau2=2.4.109-2 libdrm-radeon1=2.4.109-2 libdrm2=2.4.109-2 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.3-2+b1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libfontconfig1=2.13.1-4.3 libfreetype6=2.11.1+dfsg-1 libgcc-11-dev=11.2.0-14 libgcc-s1=11.2.0-14 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgif7=5.1.9-2 libgl1=1.4.0-1 libgl1-mesa-dri=21.3.4-1 libglapi-mesa=21.3.4-1 libglib2.0-0=2.70.2-1 libglvnd0=1.4.0-1 libglx-mesa0=21.3.4-1 libglx0=1.4.0-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.3-4 libgomp1=11.2.0-14 libgpg-error0=1.43-3 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libharfbuzz0b=2.7.4-1 libhogweed6=3.7.3-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=11.2.0-14 libjpeg62-turbo=1:2.1.2-1 libjsoncpp25=1.9.5-2 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.59+dfsg-1 libllvm13=1:13.0.1~+rc3-1~exp1 liblsan0=11.2.0-14 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libmount1=2.37.3-1 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libncurses6=6.3-2 libncursesw6=6.3-2 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.32-3 libnss3=2:3.73.1-1 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpciaccess0=0.16-3 libpcre2-16-0=10.39-3 libpcre2-32-0=10.39-3 libpcre2-8-0=10.39-3 libpcre2-dev=10.39-3 libpcre2-posix3=10.39-3 libpcre3=2:8.39-13 libpcsclite1=1.9.5-1 libperl5.32=5.32.1-6 libpipeline1=1.5.5-1 libpng16-16=1.6.37-3 libprocps8=2:3.3.17-6 libpsl5=0.21.0-1.2 libquadmath0=11.2.0-14 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-3 libsasl2-modules-db=2.1.27+dfsg2-3 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsensors-config=1:3.6.0-7 libsensors5=1:3.6.0-7 libsigsegv2=2.13-1 libsimde-dev=0.7.2-6 libsmartcols1=2.37.3-1 libsqlite3-0=3.37.2-2 libssh2-1=1.10.0-2 libssl1.1=1.1.1m-1 libstdc++-11-dev=11.2.0-14 libstdc++6=11.2.0-14 libsub-override-perl=0.09-2 libsystemd0=250.3-1 libtasn1-6=4.18.0-4 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-14 libubsan1=11.2.0-14 libuchardet0=0.0.7-1 libudev1=250.3-1 libunistring2=0.9.10-6 libuuid1=2.37.3-1 libuv1=1.43.0-1 libvulkan1=1.2.198.1-2 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libx11-xcb1=2:1.7.2-2+b1 libxau6=1:1.0.9-1 libxcb-dri2-0=1.14-3 libxcb-dri3-0=1.14-3 libxcb-glx0=1.14-3 libxcb-present0=1.14-3 libxcb-shm0=1.14-3 libxcb-sync1=1.14-3 libxcb-xfixes0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxfixes3=1:5.0.3-2 libxi6=2:1.8-1 libxml2=2.9.12+dfsg-5+b1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.12-1+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.15-1 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-4 mawk=1.3.4.20200120-3 ncurses-base=6.3-2 ncurses-bin=6.3-2 openjdk-11-jdk=11.0.14+9-1 openjdk-11-jdk-headless=11.0.14+9-1 openjdk-11-jre=11.0.14+9-1 openjdk-11-jre-headless=11.0.14+9-1 openssl=1.1.1m-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 procps=2:3.3.17-6 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 ucf=3.0043 util-linux=2.37.3-1 x11-common=1:7.7+23 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220129T025638Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220129T025638Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220127T153620Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220126T152836Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d plast=2.3.2+dfsg-8 && mkdir -p /build/plast-XqkESS && dpkg-source --no-check -x /*.dsc /build/plast-XqkESS/plast-2.3.2+dfsg && cd /build/plast-XqkESS/plast-2.3.2+dfsg && { printf '%s' 'plast (2.3.2+dfsg-8+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for #1004272 -- all / amd64 / i386 Build Daemon (x86-conova-01) Wed, 26 Jan 2022 21:11:43 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/plast-XqkESS" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/plast-XqkESS/plast-2.3.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1643231503" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/plast-XqkESS /tmp/plast-2.3.2+dfsg-8+b1_skczt2s bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220126T152836Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.QjcLxmeajP as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.QjcLxmeajP Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220126T152836Z unstable/main amd64 libfakeroot amd64 1.27-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220126T152836Z unstable/main amd64 fakeroot amd64 1.27-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (517 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4689 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.27-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.27-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.27-1_amd64.deb ... Unpacking fakeroot (1.27-1) ... Setting up libfakeroot:amd64 (1.27-1) ... Setting up fakeroot (1.27-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220129T025638Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220129T025638Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220127T153620Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220126T152836Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.QjcLxmeajP Get:1 http://snapshot.notset.fr/archive/debian/20220129T025638Z bookworm InRelease [129 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220127T153620Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220126T152836Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220129T025638Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220129T025638Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220129T025638Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220129T025638Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220129T025638Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220129T025638Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220129T025638Z bookworm/main Sources [11.8 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220129T025638Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220127T153620Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220127T153620Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220127T153620Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220127T153620Z unstable/main amd64 Packages [12.1 MB] Fetched 35.3 MB in 29s (1204 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.QjcLxmeajP I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d plast=2.3.2+dfsg-8 && mkdir -p /build/plast-XqkESS && dpkg-source --no-check -x /*.dsc /build/plast-XqkESS/plast-2.3.2+dfsg && cd /build/plast-XqkESS/plast-2.3.2+dfsg && { printf '%s' 'plast (2.3.2+dfsg-8+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for #1004272 -- all / amd64 / i386 Build Daemon (x86-conova-01) Wed, 26 Jan 2022 21:11:43 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/plast-XqkESS"' exec /tmp/mmdebstrap.QjcLxmeajP Reading package lists... NOTICE: 'plast' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/plast.git Please use: git clone https://salsa.debian.org/med-team/plast.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5749 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220129T025638Z bookworm/main plast 2.3.2+dfsg-8 (dsc) [2068 B] Get:2 http://snapshot.notset.fr/archive/debian/20220129T025638Z bookworm/main plast 2.3.2+dfsg-8 (tar) [5726 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220129T025638Z bookworm/main plast 2.3.2+dfsg-8 (diff) [21.0 kB] Fetched 5749 kB in 5s (1261 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'plast_2.3.2+dfsg-8.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting plast in /build/plast-XqkESS/plast-2.3.2+dfsg dpkg-source: info: unpacking plast_2.3.2+dfsg.orig.tar.xz dpkg-source: info: unpacking plast_2.3.2+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying adapt_auto_test_script.sh dpkg-source: info: applying no_msse3.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying pcre.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/plast-XqkESS/plast-2.3.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1643231503" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.QjcLxmeajP dpkg-buildpackage: info: source package plast dpkg-buildpackage: info: source version 2.3.2+dfsg-8+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary-arch dh binary-arch --buildsystem=cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/plast-XqkESS/plast-2.3.2+dfsg' set -e ; for SIMD in sse3 ; do \ export CXXFLAGS="-g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && export CFLAGS="-g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ dh_auto_configure --builddirectory=obj-${SIMD} ; \ done cd obj-sse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:6 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found JNI: /usr/lib/jvm/default-java/lib/libjawt.so -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3 dh_auto_configure cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:6 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found JNI: /usr/lib/jvm/default-java/lib/libjawt.so -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/plast-XqkESS/plast-2.3.2+dfsg' set -e ; for SIMD in sse3 ; do \ dh_auto_build --builddirectory=obj-${SIMD} ; \ done cd obj-sse3 && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3' /usr/bin/cmake -S/build/plast-XqkESS/plast-2.3.2+dfsg -B/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/CMakeFiles /build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/depend make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/depend make[4]: Entering directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3' cd /build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plast-XqkESS/plast-2.3.2+dfsg /build/plast-XqkESS/plast-2.3.2+dfsg /build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3 /build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3 /build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/CMakeFiles/PlastLibrary.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3' cd /build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plast-XqkESS/plast-2.3.2+dfsg /build/plast-XqkESS/plast-2.3.2+dfsg /build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3 /build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3 /build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/CMakeFiles/plast.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3' make[4]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/build make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/build make[4]: Entering directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3' make[4]: Entering directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3' [ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o [ 0%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o [ 2%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o [ 2%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/AbstractAlgorithm.cpp [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/AbstractAlgorithm.cpp [ 2%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/AlgorithmPlastn.cpp /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/AlgoIndexatorNucleotide.cpp /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/BasicAlgoIndexator.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/AlgoIndexatorNucleotide.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/AlgorithmPlastn.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/BasicAlgoIndexator.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/DatabasesProvider.cpp [ 2%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/DatabasesProvider.cpp [ 3%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoConfig.cpp [ 4%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoConfig.cpp [ 4%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoEnvironment.cpp [ 4%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/hits/common/AbstractHitIterator.cpp [ 5%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -MF 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/usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIterator.cpp [ 16%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapExtendHitIterator.cpp [ 18%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIterator.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp: In member function ‘double statistics::impl::GlobalParametersPlastn::karlinLHtoK(statistics::impl::GlobalParametersPlastn::Blast_ScoreFreq*, double, double)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 18%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp [ 18%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorNull.cpp [ 18%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include 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CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/core/impl/BasicAlignmentContainer.cpp [ 20%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp [ 20%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/core/impl/HspContainer.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/core/impl/ReaderAlignmentContainer.cpp [ 22%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP 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CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsSpouge.cpp [ 22%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/core/impl/UngapAlignmentContainer.cpp [ 23%] Building 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CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/core/impl/Alignment.cpp [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterFactory.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp: In member function ‘double statistics::impl::GlobalParametersPlastn::karlinLHtoK(statistics::impl::GlobalParametersPlastn::Blast_ScoreFreq*, double, double)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterOperator.cpp 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp [ 46%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp [ 47%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp [ 47%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o [ 47%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 48%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp [ 48%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp [ 48%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp [ 49%] Building CXX object CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp [ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp [ 50%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 50%] Building CXX object CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp [ 50%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/CommandDispatcher.cpp [ 51%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/ConfigFileProperties.cpp [ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp [ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp [ 51%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/DirectoryIterator.cpp [ 51%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/FileLineIterator.cpp [ 52%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/Observer.cpp [ 52%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/Property.cpp [ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp [ 54%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp [ 54%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp [ 54%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp [ 55%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 55%] Building CXX object CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp [ 55%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp [ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp [ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 56%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp [ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp [ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp [ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time 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-Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp [ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp [ 66%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp [ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 68%] Building CXX object 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Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp [ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 69%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp [ 69%] Building CXX object 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-D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp [ 70%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp [ 70%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp [ 70%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 71%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o /usr/bin/cc -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/plast.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/index/impl/retrievall.c /build/plast-XqkESS/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:44: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 259 | _nbAlignments - _lastNbAlign, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 260 | _nbAlignments, | ~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:78: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 11 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 265 | _maxUsedMemory, | ~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:84: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 12 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 266 | _totalUsedMemory | ~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp [ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp [ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp [ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp [ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp [ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp [ 79%] Building CXX object 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-MF CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp [ 81%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/seg/impl/dust.c [ 81%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o 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-ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/seg/impl/seg.c [ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp [ 83%] Building CXX object 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp [ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF 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-I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp make[4]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3' [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp [ 89%] Built target PlastLibrary [ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:44: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 259 | _nbAlignments - _lastNbAlign, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 260 | _nbAlignments, | ~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:78: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 11 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 265 | _maxUsedMemory, | ~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:84: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 12 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 266 | _totalUsedMemory | ~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} [ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ 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CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o CMakeFiles/plast.dir/src/seg/impl/dust.c.o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o CMakeFiles/plast.dir/src/seg/impl/seg.c.o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -o bin/None/plast -lpthread -lpcre2-8 make[4]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3' [100%] Built target plast make[3]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3' /usr/bin/cmake -E cmake_progress_start /build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3/CMakeFiles 0 make[2]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-sse3' dh_auto_build cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake 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-I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorNull.cpp [ 6%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/DatabasesProvider.cpp [ 8%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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-ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp [ 11%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp [ 12%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp [ 12%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsSpouge.cpp [ 12%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/core/impl/PlastnAlgoConfig.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp: In member function ‘double statistics::impl::GlobalParametersPlastn::karlinLHtoK(statistics::impl::GlobalParametersPlastn::Blast_ScoreFreq*, double, double)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 12%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp [ 13%] Building CXX object 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-O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp [ 16%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat 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CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterFactory.cpp [ 16%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterOperator.cpp [ 17%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o -c 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-I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp [ 32%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp [ 32%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp [ 32%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 33%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIterator.cpp [ 34%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorNull.cpp [ 35%] Building CXX object CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp [ 35%] Building CXX object CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp [ 35%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/CommandDispatcher.cpp [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp [ 37%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/ConfigFileProperties.cpp [ 37%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/DirectoryIterator.cpp [ 37%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/FileLineIterator.cpp [ 38%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/Observer.cpp [ 38%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o 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40%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 40%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o.d 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-ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/plast.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/index/impl/retrievall.c /build/plast-XqkESS/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 45%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux 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CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp [ 46%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c 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CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterFactory.cpp [ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -MF 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CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterXML.cpp [ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -c 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-D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 52%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp [ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentSplitterBanded.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o [ 53%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o -c 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CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/visitors/impl/CompareContainerVisitor.cpp [ 55%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o -c 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Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp [ 57%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -D__LINUX__ 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/visitors/impl/QueryReorderVisitor.cpp [ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/visitors/impl/ReverseStrandVisitor.cpp [ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp [ 58%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:44: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 259 | _nbAlignments - _lastNbAlign, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 260 | _nbAlignments, | ~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:78: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 11 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 265 | _maxUsedMemory, | ~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:84: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 12 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 266 | _totalUsedMemory | ~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} [ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/visitors/impl/SortContainerVisitor.cpp [ 60%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp [ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp [ 60%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp [ 60%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp [ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/alignment/visitors/impl/XmlOutputVisitor.cpp [ 61%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp [ 61%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp [ 61%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o [ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/AbstractSequenceIterator.cpp [ 63%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/BasicSequenceBuilder.cpp [ 63%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp [ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/BlastdbAsn1HeaderDecoder.cpp [ 63%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp [ 64%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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/build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp [ 72%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp [ 72%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp [ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp [ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/CommandDispatcher.cpp [ 75%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o /usr/bin/cc -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/dust.c.o -MF CMakeFiles/plast.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/seg/impl/dust.c [ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/ConfigFileProperties.cpp [ 76%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o /usr/bin/cc -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/plast.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/seg/impl/genwin.c [ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/DirectoryIterator.cpp [ 77%] Building C object CMakeFiles/plast.dir/src/seg/impl/seg.c.o /usr/bin/cc -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/seg.c.o -MF CMakeFiles/plast.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/seg.c.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/seg/impl/seg.c [ 77%] Building CXX object CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/designpattern/impl/FileLineIterator.cpp [ 78%] Building CXX object 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/index/impl/retrievall.c [ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp [ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp make[4]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' [ 84%] Built target plast [ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp [ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp [ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp [ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp [ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp [ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp [ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp [ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp [ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp [ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o [ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp [ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:44: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 259 | _nbAlignments - _lastNbAlign, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 260 | _nbAlignments, | ~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:78: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 11 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 265 | _maxUsedMemory, | ~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /build/plast-XqkESS/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:84: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 12 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 266 | _totalUsedMemory | ~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} [ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp [ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o [ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /build/plast-XqkESS/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp [ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-XqkESS/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops 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CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o make[4]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' [100%] Built target PlastLibrary make[3]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake dh_installdirs -a -O--buildsystem=cmake dh_auto_install -a -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j10 install DESTDIR=/build/plast-XqkESS/plast-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/plast-XqkESS/plast-2.3.2+dfsg -B/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/database -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BasicSequenceBuilder.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/CompositeSequenceDatabase.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceIterator.hpp -- Installing: 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/build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/Iterator.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/tools -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seg -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/lnfac.pri -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/DustMasker.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/seg.h -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/genwin.h -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgorithmPlastn.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AbstractAlgorithm.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/PlastnAlgoConfig.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgoIndexatorNucleotide.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoConfig.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoEnvironment.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/BasicAlgoIndexator.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DatabasesProvider.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/ScoreMatrix.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IDatabasesProvider.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoIndexator.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IScoreMatrix.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgorithm.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoParameters.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEnvironment.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEvents.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoConfig.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/Statistics.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsSpouge.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsPlastn.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api/IStatistics.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIterator.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE8.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorNull.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE16.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapExtendHitIterator.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractHitIterator.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractPipeHitIterator.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api/IHitIterator.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/FullGapHitIterator.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIterator.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorNull.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/CompositionHitIterator.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorSSE8.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspGeneratorCmd.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/AlignmentGeneratorCmd.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspExtensionCmd.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIterator.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIteratorCached.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastOptionsParser.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastCmd.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.h -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Wrapper.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.h -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Helper.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.h -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.h -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.h -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.h -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/JniObsfucation.h -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoHitsResultObserver.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/FileProgressionObserver.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoExecutionObserver.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractProgressionObserver.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoResultObserver.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/BargraphObserver.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractObserver.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/ObsfucatedString.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/OptionsParser.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/Option.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/CompleteSubjectDatabaseStats.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStringsRepository.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/macros.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStrings.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/RangeTree.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/version.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/obsfucation.h -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/types.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/Vector.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemoryFile.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxFile.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemoryFile.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemoryFile.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsFile.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/ZlibFile.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsThread.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemory.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsFile.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/TimeTools.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsTime.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsTime.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxThread.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsThread.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxTime.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemory.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/CommonOsImpl.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/DefaultOsFactory.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemory.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/ITime.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IOsFactory.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemoryFile.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IFile.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IThread.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IResource.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemory.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seed -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedModel.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedIterator.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/SubSeedModel.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/BasicSeedModel.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeed.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedModel.hpp -- Installing: /build/plast-XqkESS/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedIterator.hpp make[1]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/plast-XqkESS/plast-2.3.2+dfsg' dh_install -a # install binary cp -a obj-x86_64-linux-gnu/bin/*/plast debian/plast/usr/lib/plast/bin/ set -e ; for SIMD in sse3 ; do \ cp -a obj-${SIMD}/bin/*/plast debian/plast/usr/lib/plast/bin/plast-${SIMD} ; \ done # no need for the includes rm -rf debian/*/usr/include make[1]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg' dh_installdocs -a -O--buildsystem=cmake dh_installchangelogs -a -O--buildsystem=cmake dh_installman -a -O--buildsystem=cmake dh_installsystemduser -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake dh_link -a -O--buildsystem=cmake dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake dh_fixperms -a -O--buildsystem=cmake dh_missing -a -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -a -O--buildsystem=cmake debian/rules override_dh_gencontrol-arch make[1]: Entering directory '/build/plast-XqkESS/plast-2.3.2+dfsg' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-6), " dpkg-gencontrol: warning: Depends field of package plast: substitution variable ${java:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package plast: substitution variable ${java:Depends} used, but is not defined make[1]: Leaving directory '/build/plast-XqkESS/plast-2.3.2+dfsg' dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake dpkg-deb: building package 'plast-dbgsym' in '../plast-dbgsym_2.3.2+dfsg-8+b1_amd64.deb'. dpkg-deb: building package 'plast' in '../plast_2.3.2+dfsg-8+b1_amd64.deb'. dpkg-genbuildinfo --build=any -O../plast_2.3.2+dfsg-8+b1_amd64.buildinfo dpkg-genchanges --build=any -O../plast_2.3.2+dfsg-8+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/plast-XqkESS /tmp/plast-2.3.2+dfsg-8+b1_skczt2s I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_root I: removing tempdir /tmp/mmdebstrap.QjcLxmeajP... I: success in 737.6320 seconds md5: plast-dbgsym_2.3.2+dfsg-8+b1_amd64.deb: OK md5: plast_2.3.2+dfsg-8+b1_amd64.deb: OK sha1: plast-dbgsym_2.3.2+dfsg-8+b1_amd64.deb: OK sha1: plast_2.3.2+dfsg-8+b1_amd64.deb: OK sha256: plast-dbgsym_2.3.2+dfsg-8+b1_amd64.deb: OK sha256: plast_2.3.2+dfsg-8+b1_amd64.deb: OK Checksums: OK