Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/plasmidid/plasmidid_1.6.3+dfsg-3_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/plasmidid-1.6.3+dfsg-3gnqibr2t/plasmidid_1.6.3+dfsg-3_amd64.buildinfo Get source package info: plasmidid=1.6.3+dfsg-3 Source URL: http://snapshot.notset.fr/mr/package/plasmidid/1.6.3+dfsg-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=aragorn=1.2.38-4 autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-2 bedtools=2.29.2+dfsg-5 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bowtie2=2.4.2-2 bsdextrautils=2.36.1-4 bsdutils=1:2.36.1-4 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20200601 ca-certificates-java=20190909 cd-hit=4.8.1-3 circos=0.69.9+dfsg-2 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.1-5 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.1 debianutils=4.11.2 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20201015-2 file=1:5.39-3 findutils=4.8.0-1 fontconfig-config=2.13.1-4.2 fonts-circos-symbols=0.69.9+dfsg-2 fonts-cmu=0.7.0-4 fonts-dejavu-core=2.37-2 g++=4:10.2.0-1 g++-10=10.2.1-5 gcc=4:10.2.0-1 gcc-10=10.2.1-5 gcc-10-base=10.2.1-5 gettext=0.21-3 gettext-base=0.21-3 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 help2man=1.47.16 hmmer=3.3.2+dfsg-1 hostname=3.23 infernal=1.1.4-1 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 java-common=0.72 less=551-2 libacl1=2.2.53-9 libarchive-zip-perl=1.68-1 libasan6=10.2.1-5 libasound2=1.2.4-1.1 libasound2-data=1.2.4-1.1 libatomic1=10.2.1-5 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libavahi-client3=0.8-3 libavahi-common-data=0.8-3 libavahi-common3=0.8-3 libb-hooks-op-check-perl=0.22-1+b3 libbinutils=2.35.1-7 libbio-perl-perl=1.7.7-2 libbio-searchio-hmmer-perl=1.7.3-2 libblkid1=2.36.1-4 libbrotli1=1.0.9-2+b2 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcapnp-0.7.0=0.7.0-7 libcarp-always-perl=0.16-1 libcc1-0=10.2.1-5 libclone-perl=0.45-1+b1 libcom-err2=1.45.6-1 libconfig-general-perl=2.63-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libcups2=2.3.3op1-5 libcurl3-gnutls=7.74.0-1 libdata-dumper-simple-perl=0.11-5.1 libdata-stag-perl=0.14-2 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.20-1 libdebconfclient0=0.256 libdebhelper-perl=13.3.1 libdeflate0=1.7-1 libdevel-callchecker-perl=0.008-1+b2 libdivsufsort3=2.0.1-5 libdpkg-perl=1.20.7.1 libdrm-amdgpu1=2.4.103-2 libdrm-common=2.4.103-2 libdrm-intel1=2.4.103-2 libdrm-nouveau2=2.4.103-2 libdrm-radeon1=2.4.103-2 libdrm2=2.4.103-2 libdynaloader-functions-perl=0.003-1.1 libedit2=3.1-20191231-2+b1 libelf1=0.182-3 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-basedir-perl=0.08-1 libfile-stripnondeterminism-perl=1.9.0-1 libfont-ttf-perl=1.06-1.1 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.4+dfsg-1 libgcc-10-dev=10.2.1-5 libgcc-s1=10.2.1-5 libgcrypt20=1.8.7-2 libgd-perl=2.73-1+b1 libgd3=2.3.0-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgetopt-simple-perl=1.52-5.1 libgif7=5.1.9-1 libgl1=1.3.2-1 libgl1-mesa-dri=20.3.2-1 libglapi-mesa=20.3.2-1 libglib2.0-0=2.66.4-1 libglvnd0=1.3.2-1 libglx-mesa0=20.3.2-1 libglx0=1.3.2-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-5 libgomp1=10.2.1-5 libgpg-error0=1.38-2 libgraphics-colornames-perl=3.5.0-3 libgraphics-colorobject-perl=0.5.0-10 libgraphite2-3=1.3.14-1 libgsl25=2.6+dfsg-2 libgslcblas0=2.6+dfsg-2 libgssapi-krb5-2=1.18.3-4 libharfbuzz0b=2.6.7-1 libhogweed6=3.6-2 libhts3=1.11-4 libicu67=67.1-5 libidn2-0=2.3.0-4 libio-all-perl=0.87-1 libio-string-perl=1.08-3.1 libipc-system-simple-perl=1.30-1 libisl23=0.23-1 libitm1=10.2.1-5 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.0.5-2 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblcms2-2=2.9-4+b1 libldap-2.4-2=2.4.56+dfsg-1 liblist-allutils-perl=0.18-1 liblist-someutils-perl=0.58-1 liblist-utilsby-perl=0.11-1 libllvm11=1:11.0.1-2 liblmdb0=0.9.24-1 liblocale-gettext-perl=1.07-4+b1 liblsan0=10.2.1-5 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmath-bezier-perl=0.01-2.1 libmath-round-perl=0.07-1.1 libmath-vec-perl=1.01-3.1 libmath-vecstat-perl=0.08-2.1 libmbedcrypto3=2.16.9-0.1 libmbedtls12=2.16.9-0.1 libmbedx509-0=2.16.9-0.1 libmodule-implementation-perl=0.09-1.1 libmodule-runtime-perl=0.016-1 libmount1=2.36.1-4 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libmurmurhash2=1.5-2 libncbi6=6.1.20170106+dfsg1-9 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnettle8=3.6-2 libnghttp2-14=1.42.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.29-1 libnss3=2:3.60-1 libnumber-format-perl=1.75-1.1 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libparams-classify-perl=0.015-1+b3 libparams-validate-perl=1.30-1+b1 libpciaccess0=0.16-1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libpcsclite1=1.9.0-1 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libpng16-16=1.6.37-3 libprocps8=2:3.3.16-5 libpsl5=0.21.0-1.1 libpython3-stdlib=3.9.1-1 libpython3.9-minimal=3.9.1-2 libpython3.9-stdlib=3.9.1-2 libquadmath0=10.2.1-5 libreadline8=8.1-1 libreadonly-perl=2.050-2 libregexp-common-perl=2017060201-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsensors-config=1:3.6.0-3 libsensors5=1:3.6.0-3 libset-intspan-perl=1.19-1.1 libsigsegv2=2.12-3 libsmartcols1=2.36.1-4 libspiffy-perl=0.46-1 libsqlite3-0=3.34.0-1 libssh2-1=1.9.0-2 libssl1.1=1.1.1i-1 libstatistics-basic-perl=1.6611-1.1 libstdc++-10-dev=10.2.1-5 libstdc++6=10.2.1-5 libsub-override-perl=0.09-2 libsvg-perl=2.85-1 libswiss-perl=1.79-3 libsystemd0=247.2-4 libtasn1-6=4.16.0-2 libtbb2=2020.3-1 libtext-format-perl=0.62-1 libtiff5=4.2.0-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtry-tiny-perl=0.30-1 libtsan0=10.2.1-5 libubsan1=10.2.1-5 libuchardet0=0.0.7-1 libudev1=247.2-4 libunistring2=0.9.10-4 libuuid1=2.36.1-4 libvulkan1=1.2.162.0-1 libwebp6=0.6.1-2+b1 libx11-6=2:1.7.0-1 libx11-data=2:1.7.0-1 libx11-xcb1=2:1.7.0-1 libxau6=1:1.0.8-1+b2 libxcb-dri2-0=1.14-2.1 libxcb-dri3-0=1.14-2.1 libxcb-glx0=1.14-2.1 libxcb-present0=1.14-2.1 libxcb-shm0=1.14-2.1 libxcb-sync1=1.14-2.1 libxcb-xfixes0=1.14-2.1 libxcb1=1.14-2.1 libxdamage1=1:1.1.5-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1.1 libxfixes3=1:5.0.3-2 libxi6=2:1.7.10-1 libxml-libxml-perl=2.0134+dfsg-2+b1 libxml-namespacesupport-perl=1.12-1.1 libxml-sax-base-perl=1.09-1.1 libxml-sax-perl=1.02+dfsg-1 libxml-simple-perl=2.25-1 libxml2=2.9.10+dfsg-6.3+b1 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.9-1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.5-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.68 make=4.3-4 man-db=2.9.3-2 mash=2.2.2+dfsg-1+b1 mawk=1.3.4.20200120-2 media-types=3.0.0 mime-support=3.66 ncbi-blast+=2.10.1+ds-1 ncbi-data=6.1.20170106+dfsg1-9 ncbi-tools-bin=6.1.20170106+dfsg1-9 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 openjdk-11-jre=11.0.10+8-1 openjdk-11-jre-headless=11.0.10+8-1 openssl=1.1.1i-1 parallel=20161222-1.1 patch=2.7.6-7 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 po-debconf=1.0.21+nmu1 procps=2:3.3.16-5 prodigal=1:2.6.3-4 prokka=1.14.6+dfsg-3 python3=3.9.1-1 python3-all=3.9.1-1 python3-distutils=3.9.1-2 python3-lib2to3=3.9.1-2 python3-minimal=3.9.1-1 python3.9=3.9.1-2 python3.9-minimal=3.9.1-2 readline-common=8.1-1 samtools=1.11-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysstat=12.4.2-1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2020f-1 ucf=3.0043 util-linux=2.36.1-4 x11-common=1:7.7+21 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210110T204103Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d plasmidid=1.6.3+dfsg-3 && mkdir -p /build/plasmidid-mazrvn && dpkg-source --no-check -x /*.dsc /build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg && chown -R builduser:builduser /build/plasmidid-mazrvn" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1610352487" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/plasmidid-mazrvn /tmp/plasmidid-1.6.3+dfsg-3gnqibr2t bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210110T204103Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.e71Jb17zoF as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.e71Jb17zoF Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210110T204103Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210110T204103Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (645 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4661 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210110T204103Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.e71Jb17zoF Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210110T204103Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 19s (1178 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.e71Jb17zoF I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d plasmidid=1.6.3+dfsg-3 && mkdir -p /build/plasmidid-mazrvn && dpkg-source --no-check -x /*.dsc /build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg && chown -R builduser:builduser /build/plasmidid-mazrvn"' exec /tmp/mmdebstrap.e71Jb17zoF Reading package lists... NOTICE: 'plasmidid' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/plasmidid.git Please use: git clone https://salsa.debian.org/med-team/plasmidid.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 84.8 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main plasmidid 1.6.3+dfsg-3 (dsc) [2224 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main plasmidid 1.6.3+dfsg-3 (tar) [84.8 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main plasmidid 1.6.3+dfsg-3 (diff) [4156 B] Fetched 84.8 MB in 1min 10s (1211 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'plasmidid_1.6.3+dfsg-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting plasmidid in /build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg dpkg-source: info: unpacking plasmidid_1.6.3+dfsg.orig.tar.xz dpkg-source: info: unpacking plasmidid_1.6.3+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixTests.patch dpkg-source: info: applying AdjustPythonPath.patch dpkg-source: info: applying spelling.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1610352487" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.e71Jb17zoF dpkg-buildpackage: info: source package plasmidid dpkg-buildpackage: info: source version 1.6.3+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with=python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg' dh_auto_clean rm -f debian/plasmidID.1 rm -rf NO_GROUP/ TEST_DATA/plasmids_TEST_database.fasta.length TEST_DATA/plasmids_TEST_database.length debian/patches/fixTest.patch path make[1]: Leaving directory '/build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg' dh_clean debian/rules binary-arch dh binary-arch --with=python3 dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_test make[1]: Entering directory '/build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg' PATH=$PATH:/build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg/bin TEST_DATA/test.sh || true Executing:../plasmidID -1 KPN_TEST_R1.fastq.gz -2 KPN_TEST_R2.fastq.gz -d plasmids_TEST_database.fasta -c contigs_KPN_TEST.fasta -s KPN --no-trim Forward reads: KPN_TEST_R1.fastq.gz Reverse reads: KPN_TEST_R2.fastq.gz PlasmidDatabase: plasmids_TEST_database.fasta Contigs: contigs_KPN_TEST.fasta Options: --no-trim ------------------ Starting plasmidID version:1.6.3 ------------------ CHECKING DEPENDENCIES AND MANDATORY FILES DEPENDENCY STATUS ---------- ------ blastn INSTALLED bowtie2-build INSTALLED bowtie2 INSTALLED bedtools INSTALLED prokka INSTALLED samtools INSTALLED mash INSTALLED circos INSTALLED Default output directory is: /build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg Log will be saved in: /build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg/NO_GROUP/KPN/logs/plasmidID.log No trim selected, skipping trimming step Contigs supplied, ommiting assembly step ------------------ #Pipeline summary# ------------------ Reads R1 KPN_TEST_R1.fastq.gz Reads R2 KPN_TEST_R2.fastq.gz Will be mapped with ddbb plasmids_TEST_database.fasta Entries covered more than 80 % Will be clustered by 0.5 % identity And used to reconstruct contigs in contigs_KPN_TEST.fasta  STARTING KMER FILTERING, CLUSTERING and MAPPING  SCREENING READS WITH KMERS (Fri Oct 15 10:57:46 UTC 2021) Reads will be screened against database supplied for further filtering and mapping, this will reduce the input sequences to map against KPN CLUSTERING SEQUENCES BY KMER DISTANCE (Fri Oct 15 10:58:02 UTC 2021) Sequences obtained after screen will be clustered to reduce redundancy, one representative, the largest, will be considered for further analysis KPN --------------------------------------- ERROR in Script plasmidID on or near line 602; exiting with status 1 MESSAGE: See /build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg/logs/plasmidID.log for more information. command:mashclust.py -i /build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg/NO_GROUP/KPN/kmer/database.filtered_0.95_term.fasta -d 0.5 --------------------------------------- make[1]: Leaving directory '/build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg' dh_auto_install help2man -i debian/plasmidID.h2m ./plasmidID > debian/plasmidID.1 make[1]: Leaving directory '/build/plasmidid-mazrvn/plasmidid-1.6.3+dfsg' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_python3 -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package plasmidid: substitution variable ${perl:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'plasmidid' in '../plasmidid_1.6.3+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../plasmidid_1.6.3+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/plasmidid-mazrvn /tmp/plasmidid-1.6.3+dfsg-3gnqibr2t I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_root I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.e71Jb17zoF... I: success in 656.7016 seconds md5: plasmidid_1.6.3+dfsg-3_amd64.deb: OK sha1: plasmidid_1.6.3+dfsg-3_amd64.deb: OK sha256: plasmidid_1.6.3+dfsg-3_amd64.deb: OK Checksums: OK