Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/pizzly/pizzly_0.37.3+ds-6_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/pizzly-0.37.3+ds-6nsm41yw3/pizzly_0.37.3+ds-6_amd64.buildinfo Get source package info: pizzly=0.37.3+ds-6 Source URL: http://snapshot.notset.fr/mr/package/pizzly/0.37.3+ds-6/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.4-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3+b1 binutils=2.37-7 binutils-common=2.37-7 binutils-x86-64-linux-gnu=2.37-7 bsdextrautils=2.37.2-3 bsdutils=1:2.37.2-3 build-essential=12.9 bzip2=1.0.8-4 cmake=3.21.3-3 cmake-data=3.21.3-3 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.3.0-11 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-elpa-helper=2.0.9 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.3.0-11 gcc=4:10.2.1-1 gcc-10=10.3.0-11 gcc-10-base=10.3.0-11 gcc-11-base=11.2.0-8 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 help2man=1.48.5 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2+b1 libasan6=11.2.0-8 libatomic1=11.2.0-8 libattr1=1:2.5.1-1 libaudit-common=1:3.0.5-1 libaudit1=1:3.0.5-1 libbinutils=2.37-7 libblkid1=2.37.2-3 libbrotli1=1.0.9-2+b2 libbz2-1.0=1.0.8-4 libc-bin=2.32-4 libc-dev-bin=2.32-4 libc6=2.32-4 libc6-dev=2.32-4 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-8 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.25-2 libcrypt1=1:4.4.25-2 libctf-nobfd0=2.37-7 libctf0=2.37-7 libcurl4=7.74.0-1.3+b1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.5.2 libdpkg-perl=1.20.9 libelf1=0.185-2 libexpat1=2.4.1-2+b1 libffi8=3.4.2-2 libfile-stripnondeterminism-perl=1.12.0-1 libgcc-10-dev=10.3.0-11 libgcc-s1=11.2.0-8 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.21-1 libgdbm6=1.21-1 libgmp10=2:6.2.1+dfsg-2 libgnutls30=3.7.2-2 libgomp1=11.2.0-8 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libhogweed6=3.7.3-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.23-1 libitm1=11.2.0-8 libjsoncpp24=1.9.4-5 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 libldap-2.4-2=2.4.59+dfsg-1 liblocale-gettext-perl=1.07-4+b1 liblsan0=11.2.0-8 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.37.2-3 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20210905-1 libncursesw6=6.2+20210905-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-3 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.3-1 libprocps8=2:3.3.17-5 libpsl5=0.21.0-1.2 libquadmath0=11.2.0-8 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libseccomp2=2.5.2-1 libselinux1=3.1-3 libseqan2-dev=2.4.0+dfsg-14 libsigsegv2=2.13-1 libsmartcols1=2.37.2-3 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libstdc++-10-dev=10.3.0-11 libstdc++6=11.2.0-8 libsub-override-perl=0.09-2 libsystemd0=247.9-4 libtasn1-6=4.17.0-2 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-8 libubsan1=11.2.0-8 libuchardet0=0.0.7-1 libudev1=247.9-4 libunistring2=0.9.10-6 libuuid1=2.37.2-3 libuv1=1.42.0-1 libxml2=2.9.12+dfsg-5 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.14.9-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 procps=2:3.3.17-5 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 util-linux=2.37.2-3 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211012T024642Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211012T024642Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211003T205632Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d pizzly=0.37.3+ds-6 && mkdir -p /build/pizzly-KBxCuU && dpkg-source --no-check -x /*.dsc /build/pizzly-KBxCuU/pizzly-0.37.3+ds && chown -R builduser:builduser /build/pizzly-KBxCuU" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pizzly-KBxCuU/pizzly-0.37.3+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1633533747" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/pizzly-KBxCuU /tmp/pizzly-0.37.3+ds-6nsm41yw3 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211003T205632Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.7jMn998HC8 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.7jMn998HC8 Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-3). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211003T205632Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211003T205632Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1039 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4667 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211012T024642Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211012T024642Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211003T205632Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.7jMn998HC8 Get:1 http://snapshot.notset.fr/archive/debian/20211012T024642Z bookworm InRelease [128 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211003T205632Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211012T024642Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211012T024642Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211012T024642Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211012T024642Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211012T024642Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211012T024642Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211012T024642Z bookworm/main Sources [11.7 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211012T024642Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.0 MB in 20s (1178 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.7jMn998HC8 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d pizzly=0.37.3+ds-6 && mkdir -p /build/pizzly-KBxCuU && dpkg-source --no-check -x /*.dsc /build/pizzly-KBxCuU/pizzly-0.37.3+ds && chown -R builduser:builduser /build/pizzly-KBxCuU"' exec /tmp/mmdebstrap.7jMn998HC8 Reading package lists... NOTICE: 'pizzly' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pizzly.git Please use: git clone https://salsa.debian.org/med-team/pizzly.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 269 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211012T024642Z bookworm/main pizzly 0.37.3+ds-6 (dsc) [2047 B] Get:2 http://snapshot.notset.fr/archive/debian/20211012T024642Z bookworm/main pizzly 0.37.3+ds-6 (tar) [262 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211012T024642Z bookworm/main pizzly 0.37.3+ds-6 (diff) [5132 B] Fetched 269 kB in 0s (841 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'pizzly_0.37.3+ds-6.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting pizzly in /build/pizzly-KBxCuU/pizzly-0.37.3+ds dpkg-source: info: unpacking pizzly_0.37.3+ds.orig.tar.xz dpkg-source: info: unpacking pizzly_0.37.3+ds-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying executable-not-elf-or-script.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pizzly-KBxCuU/pizzly-0.37.3+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1633533747" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.7jMn998HC8 dpkg-buildpackage: info: source package pizzly dpkg-buildpackage: info: source version 0.37.3+ds-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pizzly-KBxCuU/pizzly-0.37.3+ds' dh_auto_clean install -d /build/pizzly-KBxCuU/pizzly-0.37.3\+ds/debian/.debhelper/generated/_source/home rm -f debian/pizzly.1 make[1]: Leaving directory '/build/pizzly-KBxCuU/pizzly-0.37.3+ds' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pizzly.substvars debian/files rm -fr -- debian/pizzly/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a install -d /build/pizzly-KBxCuU/pizzly-0.37.3\+ds/debian/.debhelper/generated/_source/home install -d obj-x86_64-linux-gnu cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The CXX compiler identification is GNU 10.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu dh_auto_build -a cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/pizzly-KBxCuU/pizzly-0.37.3+ds -B/build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu/CMakeFiles /build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/depend make[3]: Entering directory '/build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' cd /build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pizzly-KBxCuU/pizzly-0.37.3+ds /build/pizzly-KBxCuU/pizzly-0.37.3+ds /build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu /build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu /build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu/CMakeFiles/pizzly.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/build make[3]: Entering directory '/build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' [ 50%] Building CXX object CMakeFiles/pizzly.dir/main.cpp.o /usr/bin/c++ -I/build/pizzly-KBxCuU/pizzly-0.37.3+ds/. -g -O2 -ffile-prefix-map=/build/pizzly-KBxCuU/pizzly-0.37.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/pizzly.dir/main.cpp.o -MF CMakeFiles/pizzly.dir/main.cpp.o.d -o CMakeFiles/pizzly.dir/main.cpp.o -c /build/pizzly-KBxCuU/pizzly-0.37.3+ds/main.cpp In file included from /build/pizzly-KBxCuU/pizzly-0.37.3+ds/main.cpp:6: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/common.h: In constructor ‘ProgramOptions::ProgramOptions()’: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/common.h:18:7: warning: ‘ProgramOptions::kmerScore’ will be initialized after [-Wreorder] 18 | int kmerScore; | ^~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/common.h:17:7: warning: ‘int ProgramOptions::insertSize’ [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/common.h:17:7: warning: ‘ProgramOptions::insertSize’ will be initialized after [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/common.h:14:8: warning: ‘bool ProgramOptions::ignoreProtein’ [-Wreorder] 14 | bool ignoreProtein; | ^~~~~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ In file included from /build/pizzly-KBxCuU/pizzly-0.37.3+ds/main.cpp:8: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/GeneModel.hpp: In member function ‘bool Transcriptome::translateTrPosition(const string&, int, std::string&, int&, std::string&)’: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/GeneModel.hpp:117:10: warning: unused variable ‘fw’ [-Wunused-variable] 117 | bool fw = (trxmodel.strand == Strandedness::FORWARD); | ^~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/GeneModel.hpp: In function ‘void writeTranscriptome(Transcriptome&, std::ostream&)’: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/GeneModel.hpp:146:17: warning: unused variable ‘gene_id’ [-Wunused-variable] 146 | const auto &gene_id = gene.first; | ^~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/GeneModel.hpp:172:19: warning: unused variable ‘tr_id’ [-Wunused-variable] 172 | const auto &tr_id = trlist.first; | ^~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/GeneModel.hpp: In function ‘void parseGTF(Transcriptome&, const string&, const ProgramOptions&)’: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/GeneModel.hpp:282:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 282 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/GeneModel.hpp:329:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 329 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/GeneModel.hpp:392:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 392 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/pizzly-KBxCuU/pizzly-0.37.3+ds/main.cpp:9: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp: At global scope: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:116:2: warning: extra ‘;’ [-Wpedantic] 116 | }; | ^ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:205:27: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 205 | return std::move(m); | ~~~~~~~~~^~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:205:27: note: remove ‘std::move’ call /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:214:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 214 | return std::move(m); | ~~~~~~~~~^~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:214:21: note: remove ‘std::move’ call In file included from /build/pizzly-KBxCuU/pizzly-0.37.3+ds/main.cpp:9: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:251:9: warning: unused variable ‘matchlen’ [-Wunused-variable] 251 | int matchlen = seqan::length(krseq); | ^~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:311:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 311 | if (tr_stop > seqan::length(trseq)) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:323:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 323 | return std::move(tlist); | ~~~~~~~~~^~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:323:21: note: remove ‘std::move’ call /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:709:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 709 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:738:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 738 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:765:11: warning: unused variable ‘gap’ [-Wunused-variable] 765 | int gap = d2 - d1; | ^~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:781:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 781 | return std::move(ret); | ~~~~~~~~~^~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:781:21: note: remove ‘std::move’ call /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:883:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 883 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:929:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 929 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:867:17: warning: unused variable ‘split_reads’ [-Wunused-variable] 867 | int split_reads = spp.second; | ^~~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:1091:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1091 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:1115:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1115 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:1112:18: warning: unused variable ‘firstJsonRead’ [-Wunused-variable] 1112 | bool firstJsonRead = true; | ^~~~~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/main.cpp: In function ‘int main(int, const char**)’: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/main.cpp:126:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::unordered_map, seqan::String > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 126 | } else if (numTxpSeqFound != trx.seqs.size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /build/pizzly-KBxCuU/pizzly-0.37.3+ds/main.cpp:8: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/GeneModel.hpp: In function ‘Strandedness operator~(const Strandedness&)’: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/GeneModel.hpp:18:1: warning: control reaches end of non-void function [-Wreturn-type] 18 | } | ^ In file included from /build/pizzly-KBxCuU/pizzly-0.37.3+ds/main.cpp:9: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:397:9: warning: ‘splitStrand’ may be used uninitialized in this function [-Wmaybe-uninitialized] 397 | if (splitStrand == safeStrand) { | ^~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp: In function ‘bool filterFusionRecord(const Transcriptome&, ProgramOptions&, const FusionRecord&, SplitRecord&)’: /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:603:25: warning: ‘st2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 603 | splitrec.dir2 = st2 == Strandedness::FORWARD; // check read 2 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/pizzly-KBxCuU/pizzly-0.37.3+ds/FilterFusions.hpp:602:25: warning: ‘st1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 602 | splitrec.dir1 = st1 == Strandedness::FORWARD; // check read 1 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable pizzly /usr/bin/cmake -E cmake_link_script CMakeFiles/pizzly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/pizzly-KBxCuU/pizzly-0.37.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -DSEQAN_HAS_ZLIB=1 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/pizzly.dir/main.cpp.o -o pizzly -lpthread -lz make[3]: Leaving directory '/build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' [100%] Built target pizzly make[2]: Leaving directory '/build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/pizzly-KBxCuU/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/pizzly.substvars rm -fr -- debian/.debhelper/generated/pizzly/ debian/pizzly/ debian/tmp/ dh_auto_install --destdir=debian/pizzly/ -a install -d /build/pizzly-KBxCuU/pizzly-0.37.3\+ds/debian/pizzly debian/rules override_dh_install make[1]: Entering directory '/build/pizzly-KBxCuU/pizzly-0.37.3+ds' help2man -N -n pizzly -s 1 obj-*/pizzly > debian/pizzly.1 dh_install install -d debian/pizzly/usr/bin cp --reflink=auto -a ./obj-x86_64-linux-gnu/pizzly ./scripts/flatten_json.py ./scripts/get_fragment_length.py debian/pizzly/usr/bin/ install -d debian/.debhelper/generated/pizzly make[1]: Leaving directory '/build/pizzly-KBxCuU/pizzly-0.37.3+ds' dh_installdocs -a install -d debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./README.md debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./debian/README.Debian debian/pizzly/usr/share/doc/pizzly chmod -R u\+rw,go=rX debian/pizzly/usr/share/doc install -p -m0644 debian/README.Debian debian/pizzly/usr/share/doc/pizzly/README.Debian install -p -m0644 debian/copyright debian/pizzly/usr/share/doc/pizzly/copyright dh_installchangelogs -a install -p -m0644 debian/changelog debian/pizzly/usr/share/doc/pizzly/changelog.Debian dh_installman -a install -d debian/pizzly/usr/share/man/man1/ install -p -m0644 ./debian/pizzly.1 debian/pizzly/usr/share/man/man1/pizzly.1 man-recode --to-code UTF-8 --suffix .dh-new debian/pizzly/usr/share/man/man1/pizzly.1 mv debian/pizzly/usr/share/man/man1/pizzly.1.dh-new debian/pizzly/usr/share/man/man1/pizzly.1 chmod 0644 -- debian/pizzly/usr/share/man/man1/pizzly.1 dh_lintian -a install -d debian/pizzly/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/pizzly/usr/share/lintian/overrides/pizzly dh_perl -a dh_link -a rm -f debian/pizzly/usr/bin/pizzly_flatten_json.py ln -s flatten_json.py debian/pizzly/usr/bin/pizzly_flatten_json.py dh_strip_nondeterminism -a dh_compress -a cd debian/pizzly chmod a-x usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 gzip -9nf usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 cd '/build/pizzly-KBxCuU/pizzly-0.37.3+ds' dh_fixperms -a find debian/pizzly ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/pizzly/usr/share/doc -type f -a -true -a ! -regex 'debian/pizzly/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/pizzly/usr/share/man debian/pizzly/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a dwz -- debian/pizzly/usr/bin/pizzly dh_strip -a install -d debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/pizzly/usr/bin/pizzly debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/81/50e84a4be6c9b442ac857df63db6acf2f90852.debug chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/81/50e84a4be6c9b442ac857df63db6acf2f90852.debug strip --remove-section=.comment --remove-section=.note debian/pizzly/usr/bin/pizzly objcopy --add-gnu-debuglink debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/81/50e84a4be6c9b442ac857df63db6acf2f90852.debug debian/pizzly/usr/bin/pizzly install -d debian/.debhelper/pizzly/dbgsym-root/usr/share/doc ln -s pizzly debian/.debhelper/pizzly/dbgsym-root/usr/share/doc/pizzly-dbgsym dh_makeshlibs -a rm -f debian/pizzly/DEBIAN/shlibs dh_shlibdeps -a install -d debian/pizzly/DEBIAN dpkg-shlibdeps -Tdebian/pizzly.substvars debian/pizzly/usr/bin/pizzly dh_installdeb -a dh_gencontrol -a echo misc:Depends= >> debian/pizzly.substvars echo misc:Pre-Depends= >> debian/pizzly.substvars install -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -Pdebian/.debhelper/pizzly/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=pizzly-dbgsym "-DDepends=pizzly (= \${binary:Version})" "-DDescription=debug symbols for pizzly" -DBuild-Ids=8150e84a4be6c9b442ac857df63db6acf2f90852 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -Pdebian/pizzly chmod 0644 -- debian/pizzly/DEBIAN/control dh_md5sums -a cd debian/pizzly >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/pizzly/DEBIAN/md5sums cd debian/.debhelper/pizzly/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/pizzly .. dpkg-deb --root-owner-group --build debian/.debhelper/pizzly/dbgsym-root .. dpkg-deb: building package 'pizzly' in '../pizzly_0.37.3+ds-6_amd64.deb'. dpkg-deb: building package 'pizzly-dbgsym' in '../pizzly-dbgsym_0.37.3+ds-6_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../pizzly_0.37.3+ds-6_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/pizzly-KBxCuU /tmp/pizzly-0.37.3+ds-6nsm41yw3 I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.7jMn998HC8... I: success in 347.2837 seconds md5: pizzly-dbgsym_0.37.3+ds-6_amd64.deb: OK md5: pizzly_0.37.3+ds-6_amd64.deb: OK sha1: pizzly-dbgsym_0.37.3+ds-6_amd64.deb: OK sha1: pizzly_0.37.3+ds-6_amd64.deb: OK sha256: pizzly-dbgsym_0.37.3+ds-6_amd64.deb: OK sha256: pizzly_0.37.3+ds-6_amd64.deb: OK Checksums: OK