Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/phyml/phyml_3.3.20200621-3_amd64.buildinfo Use metasnap for getting required timestamps Cannot get timestamps from metasnap: 404 (Not Found) Use snapshot for getting required timestamps Get source package info: phyml=3:3.3.20200621-3 Source URL: http://snapshot.notset.fr/mr/package/phyml/3:3.3.20200621-3/srcfiles?fileinfo=1 Initialize APT cache Get binary package info: adduser=3.118 Binary URL: http://snapshot.notset.fr/mr/binary/adduser/3.118/binfiles?fileinfo=1 Get binary package info: autoconf=2.71-2 Binary URL: http://snapshot.notset.fr/mr/binary/autoconf/2.71-2/binfiles?fileinfo=1 Get binary package info: automake=1:1.16.5-1 Binary URL: http://snapshot.notset.fr/mr/binary/automake/1:1.16.5-1/binfiles?fileinfo=1 Get binary package info: autopoint=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/autopoint/0.21-4/binfiles?fileinfo=1 Get binary package info: autotools-dev=20180224.1+nmu1 Binary URL: http://snapshot.notset.fr/mr/binary/autotools-dev/20180224.1+nmu1/binfiles?fileinfo=1 Get binary package info: base-files=12 Binary URL: http://snapshot.notset.fr/mr/binary/base-files/12/binfiles?fileinfo=1 Get binary package info: base-passwd=3.5.52 Binary URL: http://snapshot.notset.fr/mr/binary/base-passwd/3.5.52/binfiles?fileinfo=1 Get binary package info: bash=5.1-3.1 Binary URL: http://snapshot.notset.fr/mr/binary/bash/5.1-3.1/binfiles?fileinfo=1 Get binary package info: binutils=2.37-8 Binary URL: http://snapshot.notset.fr/mr/binary/binutils/2.37-8/binfiles?fileinfo=1 Get binary package info: binutils-common=2.37-8 Binary URL: http://snapshot.notset.fr/mr/binary/binutils-common/2.37-8/binfiles?fileinfo=1 Get binary package info: binutils-x86-64-linux-gnu=2.37-8 Binary URL: http://snapshot.notset.fr/mr/binary/binutils-x86-64-linux-gnu/2.37-8/binfiles?fileinfo=1 Get binary package info: bsdextrautils=2.37.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/bsdextrautils/2.37.2-4/binfiles?fileinfo=1 Get binary package info: bsdutils=1:2.37.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/bsdutils/1:2.37.2-4/binfiles?fileinfo=1 Get binary package info: build-essential=12.9 Binary URL: http://snapshot.notset.fr/mr/binary/build-essential/12.9/binfiles?fileinfo=1 Get binary package info: bzip2=1.0.8-4 Binary URL: http://snapshot.notset.fr/mr/binary/bzip2/1.0.8-4/binfiles?fileinfo=1 Get binary package info: chrpath=0.16-2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/chrpath/0.16-2+b1/binfiles?fileinfo=1 Get binary package info: coreutils=8.32-4.1 Binary URL: http://snapshot.notset.fr/mr/binary/coreutils/8.32-4.1/binfiles?fileinfo=1 Get binary package info: cpp=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/cpp/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: cpp-11=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/cpp-11/11.2.0-10/binfiles?fileinfo=1 Get binary package info: dash=0.5.11+git20210903+057cd650a4ed-3 Binary URL: http://snapshot.notset.fr/mr/binary/dash/0.5.11+git20210903+057cd650a4ed-3/binfiles?fileinfo=1 Get binary package info: debconf=1.5.79 Binary URL: http://snapshot.notset.fr/mr/binary/debconf/1.5.79/binfiles?fileinfo=1 Get binary package info: debhelper=13.5.2 Binary URL: http://snapshot.notset.fr/mr/binary/debhelper/13.5.2/binfiles?fileinfo=1 Get binary package info: debianutils=5.5-1 Binary URL: http://snapshot.notset.fr/mr/binary/debianutils/5.5-1/binfiles?fileinfo=1 Get binary package info: dh-autoreconf=20 Binary URL: http://snapshot.notset.fr/mr/binary/dh-autoreconf/20/binfiles?fileinfo=1 Get binary package info: dh-strip-nondeterminism=1.12.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/dh-strip-nondeterminism/1.12.0-2/binfiles?fileinfo=1 Get binary package info: diffutils=1:3.7-5 Binary URL: http://snapshot.notset.fr/mr/binary/diffutils/1:3.7-5/binfiles?fileinfo=1 Get binary package info: dpkg=1.20.9 Binary URL: http://snapshot.notset.fr/mr/binary/dpkg/1.20.9/binfiles?fileinfo=1 Get binary package info: dpkg-dev=1.20.9 Binary URL: http://snapshot.notset.fr/mr/binary/dpkg-dev/1.20.9/binfiles?fileinfo=1 Get binary package info: dwz=0.14-1 Binary URL: http://snapshot.notset.fr/mr/binary/dwz/0.14-1/binfiles?fileinfo=1 Get binary package info: file=1:5.39-3 Binary URL: http://snapshot.notset.fr/mr/binary/file/1:5.39-3/binfiles?fileinfo=1 Get binary package info: findutils=4.8.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/findutils/4.8.0-1/binfiles?fileinfo=1 Get binary package info: g++=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/g++/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: g++-11=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/g++-11/11.2.0-10/binfiles?fileinfo=1 Get binary package info: gcc=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/gcc/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: gcc-11=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/gcc-11/11.2.0-10/binfiles?fileinfo=1 Get binary package info: gcc-11-base=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/gcc-11-base/11.2.0-10/binfiles?fileinfo=1 Get binary package info: gettext=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/gettext/0.21-4/binfiles?fileinfo=1 Get binary package info: gettext-base=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/gettext-base/0.21-4/binfiles?fileinfo=1 Get binary package info: gfortran-11=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/gfortran-11/11.2.0-10/binfiles?fileinfo=1 Get binary package info: grep=3.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/grep/3.7-1/binfiles?fileinfo=1 Get binary package info: groff-base=1.22.4-7 Binary URL: http://snapshot.notset.fr/mr/binary/groff-base/1.22.4-7/binfiles?fileinfo=1 Get binary package info: gzip=1.10-4 Binary URL: http://snapshot.notset.fr/mr/binary/gzip/1.10-4/binfiles?fileinfo=1 Get binary package info: hostname=3.23 Binary URL: http://snapshot.notset.fr/mr/binary/hostname/3.23/binfiles?fileinfo=1 Get binary package info: ibverbs-providers=36.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/ibverbs-providers/36.0-1/binfiles?fileinfo=1 Get binary package info: init-system-helpers=1.60 Binary URL: http://snapshot.notset.fr/mr/binary/init-system-helpers/1.60/binfiles?fileinfo=1 Get binary package info: intltool-debian=0.35.0+20060710.5 Binary URL: http://snapshot.notset.fr/mr/binary/intltool-debian/0.35.0+20060710.5/binfiles?fileinfo=1 Get binary package info: libacl1=2.3.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libacl1/2.3.1-1/binfiles?fileinfo=1 Get binary package info: libarchive-zip-perl=1.68-1 Binary URL: http://snapshot.notset.fr/mr/binary/libarchive-zip-perl/1.68-1/binfiles?fileinfo=1 Get binary package info: libasan6=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libasan6/11.2.0-10/binfiles?fileinfo=1 Get binary package info: libatomic1=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libatomic1/11.2.0-10/binfiles?fileinfo=1 Get binary package info: libattr1=1:2.5.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libattr1/1:2.5.1-1/binfiles?fileinfo=1 Get binary package info: libaudit-common=1:3.0.6-1 Binary URL: http://snapshot.notset.fr/mr/binary/libaudit-common/1:3.0.6-1/binfiles?fileinfo=1 Get binary package info: libaudit1=1:3.0.6-1 Binary URL: http://snapshot.notset.fr/mr/binary/libaudit1/1:3.0.6-1/binfiles?fileinfo=1 Get binary package info: libbinutils=2.37-8 Binary URL: http://snapshot.notset.fr/mr/binary/libbinutils/2.37-8/binfiles?fileinfo=1 Get binary package info: libblkid1=2.37.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/libblkid1/2.37.2-4/binfiles?fileinfo=1 Get binary package info: libbsd0=0.11.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libbsd0/0.11.3-1/binfiles?fileinfo=1 Get binary package info: libbz2-1.0=1.0.8-4 Binary URL: http://snapshot.notset.fr/mr/binary/libbz2-1.0/1.0.8-4/binfiles?fileinfo=1 Get binary package info: libc-bin=2.32-4 Binary URL: http://snapshot.notset.fr/mr/binary/libc-bin/2.32-4/binfiles?fileinfo=1 Get binary package info: libc-dev-bin=2.32-4 Binary URL: http://snapshot.notset.fr/mr/binary/libc-dev-bin/2.32-4/binfiles?fileinfo=1 Get binary package info: libc6=2.32-4 Binary URL: http://snapshot.notset.fr/mr/binary/libc6/2.32-4/binfiles?fileinfo=1 Get binary package info: libc6-dev=2.32-4 Binary URL: http://snapshot.notset.fr/mr/binary/libc6-dev/2.32-4/binfiles?fileinfo=1 Get binary package info: libcap-ng0=0.7.9-2.2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libcap-ng0/0.7.9-2.2+b1/binfiles?fileinfo=1 Get binary package info: libcap2=1:2.44-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcap2/1:2.44-1/binfiles?fileinfo=1 Get binary package info: libcbor0.8=0.8.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcbor0.8/0.8.0-1/binfiles?fileinfo=1 Get binary package info: libcc1-0=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libcc1-0/11.2.0-10/binfiles?fileinfo=1 Get binary package info: libcom-err2=1.46.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcom-err2/1.46.4-1/binfiles?fileinfo=1 Get binary package info: libcrypt-dev=1:4.4.25-2 Binary URL: http://snapshot.notset.fr/mr/binary/libcrypt-dev/1:4.4.25-2/binfiles?fileinfo=1 Get binary package info: libcrypt1=1:4.4.25-2 Binary URL: http://snapshot.notset.fr/mr/binary/libcrypt1/1:4.4.25-2/binfiles?fileinfo=1 Get binary package info: libctf-nobfd0=2.37-8 Binary URL: http://snapshot.notset.fr/mr/binary/libctf-nobfd0/2.37-8/binfiles?fileinfo=1 Get binary package info: libctf0=2.37-8 Binary URL: http://snapshot.notset.fr/mr/binary/libctf0/2.37-8/binfiles?fileinfo=1 Get binary package info: libdb5.3=5.3.28+dfsg1-0.8 Binary URL: http://snapshot.notset.fr/mr/binary/libdb5.3/5.3.28+dfsg1-0.8/binfiles?fileinfo=1 Get binary package info: libdebconfclient0=0.260 Binary URL: http://snapshot.notset.fr/mr/binary/libdebconfclient0/0.260/binfiles?fileinfo=1 Get binary package info: libdebhelper-perl=13.5.2 Binary URL: http://snapshot.notset.fr/mr/binary/libdebhelper-perl/13.5.2/binfiles?fileinfo=1 Get binary package info: libdpkg-perl=1.20.9 Binary URL: http://snapshot.notset.fr/mr/binary/libdpkg-perl/1.20.9/binfiles?fileinfo=1 Get binary package info: libedit2=3.1-20210910-1 Binary URL: http://snapshot.notset.fr/mr/binary/libedit2/3.1-20210910-1/binfiles?fileinfo=1 Get binary package info: libelf1=0.185-2 Binary URL: http://snapshot.notset.fr/mr/binary/libelf1/0.185-2/binfiles?fileinfo=1 Get binary package info: libevent-2.1-7=2.1.12-stable-1 Binary URL: http://snapshot.notset.fr/mr/binary/libevent-2.1-7/2.1.12-stable-1/binfiles?fileinfo=1 Get binary package info: libevent-core-2.1-7=2.1.12-stable-1 Binary URL: http://snapshot.notset.fr/mr/binary/libevent-core-2.1-7/2.1.12-stable-1/binfiles?fileinfo=1 Get binary package info: libevent-dev=2.1.12-stable-1 Binary URL: http://snapshot.notset.fr/mr/binary/libevent-dev/2.1.12-stable-1/binfiles?fileinfo=1 Get binary package info: libevent-extra-2.1-7=2.1.12-stable-1 Binary URL: http://snapshot.notset.fr/mr/binary/libevent-extra-2.1-7/2.1.12-stable-1/binfiles?fileinfo=1 Get binary package info: libevent-openssl-2.1-7=2.1.12-stable-1 Binary URL: http://snapshot.notset.fr/mr/binary/libevent-openssl-2.1-7/2.1.12-stable-1/binfiles?fileinfo=1 Get binary package info: libevent-pthreads-2.1-7=2.1.12-stable-1 Binary URL: http://snapshot.notset.fr/mr/binary/libevent-pthreads-2.1-7/2.1.12-stable-1/binfiles?fileinfo=1 Get binary package info: libfabric1=1.11.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libfabric1/1.11.0-2/binfiles?fileinfo=1 Get binary package info: libffi8=3.4.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/libffi8/3.4.2-3/binfiles?fileinfo=1 Get binary package info: libfido2-1=1.9.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libfido2-1/1.9.0-1/binfiles?fileinfo=1 Get binary package info: libfile-stripnondeterminism-perl=1.12.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libfile-stripnondeterminism-perl/1.12.0-2/binfiles?fileinfo=1 Get binary package info: libgcc-11-dev=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libgcc-11-dev/11.2.0-10/binfiles?fileinfo=1 Get binary package info: libgcc-s1=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libgcc-s1/11.2.0-10/binfiles?fileinfo=1 Get binary package info: libgcrypt20=1.9.4-3+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libgcrypt20/1.9.4-3+b1/binfiles?fileinfo=1 Get binary package info: libgdbm-compat4=1.22-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgdbm-compat4/1.22-1/binfiles?fileinfo=1 Get binary package info: libgdbm6=1.22-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgdbm6/1.22-1/binfiles?fileinfo=1 Get binary package info: libgfortran-11-dev=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libgfortran-11-dev/11.2.0-10/binfiles?fileinfo=1 Get binary package info: libgfortran5=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libgfortran5/11.2.0-10/binfiles?fileinfo=1 Get binary package info: libglib2.0-0=2.70.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/libglib2.0-0/2.70.0-3/binfiles?fileinfo=1 Get binary package info: libgmp10=2:6.2.1+dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/libgmp10/2:6.2.1+dfsg-2/binfiles?fileinfo=1 Get binary package info: libgomp1=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libgomp1/11.2.0-10/binfiles?fileinfo=1 Get binary package info: libgpg-error0=1.42-3 Binary URL: http://snapshot.notset.fr/mr/binary/libgpg-error0/1.42-3/binfiles?fileinfo=1 Get binary package info: libgssapi-krb5-2=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libgssapi-krb5-2/1.18.3-7/binfiles?fileinfo=1 Get binary package info: libhwloc-dev=2.6.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libhwloc-dev/2.6.0-1/binfiles?fileinfo=1 Get binary package info: libhwloc-plugins=2.6.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libhwloc-plugins/2.6.0-1/binfiles?fileinfo=1 Get binary package info: libhwloc15=2.6.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libhwloc15/2.6.0-1/binfiles?fileinfo=1 Get binary package info: libibverbs-dev=36.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libibverbs-dev/36.0-1/binfiles?fileinfo=1 Get binary package info: libibverbs1=36.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libibverbs1/36.0-1/binfiles?fileinfo=1 Get binary package info: libicu67=67.1-7 Binary URL: http://snapshot.notset.fr/mr/binary/libicu67/67.1-7/binfiles?fileinfo=1 Get binary package info: libisl23=0.24-2 Binary URL: http://snapshot.notset.fr/mr/binary/libisl23/0.24-2/binfiles?fileinfo=1 Get binary package info: libitm1=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libitm1/11.2.0-10/binfiles?fileinfo=1 Get binary package info: libjs-jquery=3.5.1+dfsg+~3.5.5-8 Binary URL: http://snapshot.notset.fr/mr/binary/libjs-jquery/3.5.1+dfsg+~3.5.5-8/binfiles?fileinfo=1 Get binary package info: libjs-jquery-ui=1.12.1+dfsg-8 Binary URL: http://snapshot.notset.fr/mr/binary/libjs-jquery-ui/1.12.1+dfsg-8/binfiles?fileinfo=1 Get binary package info: libk5crypto3=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libk5crypto3/1.18.3-7/binfiles?fileinfo=1 Get binary package info: libkeyutils1=1.6.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/libkeyutils1/1.6.1-2/binfiles?fileinfo=1 Get binary package info: libkrb5-3=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libkrb5-3/1.18.3-7/binfiles?fileinfo=1 Get binary package info: libkrb5support0=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libkrb5support0/1.18.3-7/binfiles?fileinfo=1 Get binary package info: liblsan0=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/liblsan0/11.2.0-10/binfiles?fileinfo=1 Get binary package info: libltdl-dev=2.4.6-15 Binary URL: http://snapshot.notset.fr/mr/binary/libltdl-dev/2.4.6-15/binfiles?fileinfo=1 Get binary package info: libltdl7=2.4.6-15 Binary URL: http://snapshot.notset.fr/mr/binary/libltdl7/2.4.6-15/binfiles?fileinfo=1 Get binary package info: liblz4-1=1.9.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/liblz4-1/1.9.3-2/binfiles?fileinfo=1 Get binary package info: liblzma5=5.2.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/liblzma5/5.2.5-2/binfiles?fileinfo=1 Get binary package info: libmagic-mgc=1:5.39-3 Binary URL: http://snapshot.notset.fr/mr/binary/libmagic-mgc/1:5.39-3/binfiles?fileinfo=1 Get binary package info: libmagic1=1:5.39-3 Binary URL: http://snapshot.notset.fr/mr/binary/libmagic1/1:5.39-3/binfiles?fileinfo=1 Get binary package info: libmd0=1.0.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libmd0/1.0.4-1/binfiles?fileinfo=1 Get binary package info: libmount1=2.37.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/libmount1/2.37.2-4/binfiles?fileinfo=1 Get binary package info: libmpc3=1.2.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libmpc3/1.2.1-1/binfiles?fileinfo=1 Get binary package info: libmpfr6=4.1.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/libmpfr6/4.1.0-3/binfiles?fileinfo=1 Get binary package info: libnl-3-200=3.4.0-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libnl-3-200/3.4.0-1+b1/binfiles?fileinfo=1 Get binary package info: libnl-3-dev=3.4.0-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libnl-3-dev/3.4.0-1+b1/binfiles?fileinfo=1 Get binary package info: libnl-route-3-200=3.4.0-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libnl-route-3-200/3.4.0-1+b1/binfiles?fileinfo=1 Get binary package info: libnl-route-3-dev=3.4.0-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libnl-route-3-dev/3.4.0-1+b1/binfiles?fileinfo=1 Get binary package info: libnsl-dev=1.3.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libnsl-dev/1.3.0-2/binfiles?fileinfo=1 Get binary package info: libnsl2=1.3.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libnsl2/1.3.0-2/binfiles?fileinfo=1 Get binary package info: libnuma-dev=2.0.14-3 Binary URL: http://snapshot.notset.fr/mr/binary/libnuma-dev/2.0.14-3/binfiles?fileinfo=1 Get binary package info: libnuma1=2.0.14-3 Binary URL: http://snapshot.notset.fr/mr/binary/libnuma1/2.0.14-3/binfiles?fileinfo=1 Get binary package info: libopenmpi-dev=4.1.2~rc1-5 Binary URL: http://snapshot.notset.fr/mr/binary/libopenmpi-dev/4.1.2~rc1-5/binfiles?fileinfo=1 Get binary package info: libopenmpi3=4.1.2~rc1-5 Binary URL: http://snapshot.notset.fr/mr/binary/libopenmpi3/4.1.2~rc1-5/binfiles?fileinfo=1 Get binary package info: libpam-modules=1.4.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-modules/1.4.0-10/binfiles?fileinfo=1 Get binary package info: libpam-modules-bin=1.4.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-modules-bin/1.4.0-10/binfiles?fileinfo=1 Get binary package info: libpam-runtime=1.4.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-runtime/1.4.0-10/binfiles?fileinfo=1 Get binary package info: libpam0g=1.4.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libpam0g/1.4.0-10/binfiles?fileinfo=1 Get binary package info: libpciaccess0=0.16-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpciaccess0/0.16-1/binfiles?fileinfo=1 Get binary package info: libpcre2-8-0=10.36-2 Binary URL: http://snapshot.notset.fr/mr/binary/libpcre2-8-0/10.36-2/binfiles?fileinfo=1 Get binary package info: libpcre3=2:8.39-13 Binary URL: http://snapshot.notset.fr/mr/binary/libpcre3/2:8.39-13/binfiles?fileinfo=1 Get binary package info: libperl5.32=5.32.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/libperl5.32/5.32.1-6/binfiles?fileinfo=1 Get binary package info: libpipeline1=1.5.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpipeline1/1.5.3-1/binfiles?fileinfo=1 Get binary package info: libpmix-dev=4.1.1~rc5-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpmix-dev/4.1.1~rc5-1/binfiles?fileinfo=1 Get binary package info: libpmix2=4.1.1~rc5-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpmix2/4.1.1~rc5-1/binfiles?fileinfo=1 Get binary package info: libpsm-infinipath1=3.3+20.604758e7-6.1 Binary URL: http://snapshot.notset.fr/mr/binary/libpsm-infinipath1/3.3+20.604758e7-6.1/binfiles?fileinfo=1 Get binary package info: libpsm2-2=11.2.185-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpsm2-2/11.2.185-1/binfiles?fileinfo=1 Get binary package info: libquadmath0=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libquadmath0/11.2.0-10/binfiles?fileinfo=1 Get binary package info: librdmacm1=36.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/librdmacm1/36.0-1/binfiles?fileinfo=1 Get binary package info: libseccomp2=2.5.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libseccomp2/2.5.2-2/binfiles?fileinfo=1 Get binary package info: libselinux1=3.1-3+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libselinux1/3.1-3+b1/binfiles?fileinfo=1 Get binary package info: libsemanage-common=3.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsemanage-common/3.1-1/binfiles?fileinfo=1 Get binary package info: libsemanage1=3.1-1+b2 Binary URL: http://snapshot.notset.fr/mr/binary/libsemanage1/3.1-1+b2/binfiles?fileinfo=1 Get binary package info: libsepol1=3.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsepol1/3.1-1/binfiles?fileinfo=1 Get binary package info: libsigsegv2=2.13-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsigsegv2/2.13-1/binfiles?fileinfo=1 Get binary package info: libsmartcols1=2.37.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/libsmartcols1/2.37.2-4/binfiles?fileinfo=1 Get binary package info: libssl1.1=1.1.1l-1 Binary URL: http://snapshot.notset.fr/mr/binary/libssl1.1/1.1.1l-1/binfiles?fileinfo=1 Get binary package info: libstdc++-11-dev=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libstdc++-11-dev/11.2.0-10/binfiles?fileinfo=1 Get binary package info: libstdc++6=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libstdc++6/11.2.0-10/binfiles?fileinfo=1 Get binary package info: libsub-override-perl=0.09-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsub-override-perl/0.09-2/binfiles?fileinfo=1 Get binary package info: libsystemd0=249.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsystemd0/249.5-2/binfiles?fileinfo=1 Get binary package info: libtinfo6=6.2+20210905-1 Binary URL: http://snapshot.notset.fr/mr/binary/libtinfo6/6.2+20210905-1/binfiles?fileinfo=1 Get binary package info: libtirpc-common=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc-common/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtirpc-dev=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc-dev/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtirpc3=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc3/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtool=2.4.6-15 Binary URL: http://snapshot.notset.fr/mr/binary/libtool/2.4.6-15/binfiles?fileinfo=1 Get binary package info: libtsan0=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libtsan0/11.2.0-10/binfiles?fileinfo=1 Get binary package info: libubsan1=11.2.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libubsan1/11.2.0-10/binfiles?fileinfo=1 Get binary package info: libuchardet0=0.0.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/libuchardet0/0.0.7-1/binfiles?fileinfo=1 Get binary package info: libucx0=1.11.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/libucx0/1.11.2-1/binfiles?fileinfo=1 Get binary package info: libudev1=249.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/libudev1/249.5-2/binfiles?fileinfo=1 Get binary package info: libunistring2=0.9.10-6 Binary URL: http://snapshot.notset.fr/mr/binary/libunistring2/0.9.10-6/binfiles?fileinfo=1 Get binary package info: libuuid1=2.37.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/libuuid1/2.37.2-4/binfiles?fileinfo=1 Get binary package info: libx11-6=2:1.7.2-2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libx11-6/2:1.7.2-2+b1/binfiles?fileinfo=1 Get binary package info: libx11-data=2:1.7.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libx11-data/2:1.7.2-2/binfiles?fileinfo=1 Get binary package info: libxau6=1:1.0.9-1 Binary URL: http://snapshot.notset.fr/mr/binary/libxau6/1:1.0.9-1/binfiles?fileinfo=1 Get binary package info: libxcb1=1.14-3 Binary URL: http://snapshot.notset.fr/mr/binary/libxcb1/1.14-3/binfiles?fileinfo=1 Get binary package info: libxdmcp6=1:1.1.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/libxdmcp6/1:1.1.2-3/binfiles?fileinfo=1 Get binary package info: libxext6=2:1.3.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libxext6/2:1.3.4-1/binfiles?fileinfo=1 Get binary package info: libxml2=2.9.12+dfsg-5 Binary URL: http://snapshot.notset.fr/mr/binary/libxml2/2.9.12+dfsg-5/binfiles?fileinfo=1 Get binary package info: libxnvctrl0=470.57.02-2 Binary URL: http://snapshot.notset.fr/mr/binary/libxnvctrl0/470.57.02-2/binfiles?fileinfo=1 Get binary package info: libzstd1=1.4.8+dfsg-3 Binary URL: http://snapshot.notset.fr/mr/binary/libzstd1/1.4.8+dfsg-3/binfiles?fileinfo=1 Get binary package info: linux-libc-dev=5.14.12-1 Binary URL: http://snapshot.notset.fr/mr/binary/linux-libc-dev/5.14.12-1/binfiles?fileinfo=1 Get binary package info: login=1:4.8.1-1.1 Binary URL: http://snapshot.notset.fr/mr/binary/login/1:4.8.1-1.1/binfiles?fileinfo=1 Get binary package info: lsb-base=11.1.0 Binary URL: http://snapshot.notset.fr/mr/binary/lsb-base/11.1.0/binfiles?fileinfo=1 Get binary package info: m4=1.4.18-5 Binary URL: http://snapshot.notset.fr/mr/binary/m4/1.4.18-5/binfiles?fileinfo=1 Get binary package info: make=4.3-4.1 Binary URL: http://snapshot.notset.fr/mr/binary/make/4.3-4.1/binfiles?fileinfo=1 Get binary package info: man-db=2.9.4-2 Binary URL: http://snapshot.notset.fr/mr/binary/man-db/2.9.4-2/binfiles?fileinfo=1 Get binary package info: mawk=1.3.4.20200120-2 Binary URL: http://snapshot.notset.fr/mr/binary/mawk/1.3.4.20200120-2/binfiles?fileinfo=1 Get binary package info: ncurses-base=6.2+20210905-1 Binary URL: http://snapshot.notset.fr/mr/binary/ncurses-base/6.2+20210905-1/binfiles?fileinfo=1 Get binary package info: ncurses-bin=6.2+20210905-1 Binary URL: http://snapshot.notset.fr/mr/binary/ncurses-bin/6.2+20210905-1/binfiles?fileinfo=1 Get binary package info: ocl-icd-libopencl1=2.2.14-3 Binary URL: http://snapshot.notset.fr/mr/binary/ocl-icd-libopencl1/2.2.14-3/binfiles?fileinfo=1 Get binary package info: openmpi-bin=4.1.2~rc1-5 Binary URL: http://snapshot.notset.fr/mr/binary/openmpi-bin/4.1.2~rc1-5/binfiles?fileinfo=1 Get binary package info: openmpi-common=4.1.2~rc1-5 Binary URL: http://snapshot.notset.fr/mr/binary/openmpi-common/4.1.2~rc1-5/binfiles?fileinfo=1 Get binary package info: openssh-client=1:8.4p1-6 Binary URL: http://snapshot.notset.fr/mr/binary/openssh-client/1:8.4p1-6/binfiles?fileinfo=1 Get binary package info: passwd=1:4.8.1-1.1 Binary URL: http://snapshot.notset.fr/mr/binary/passwd/1:4.8.1-1.1/binfiles?fileinfo=1 Get binary package info: patch=2.7.6-7 Binary URL: http://snapshot.notset.fr/mr/binary/patch/2.7.6-7/binfiles?fileinfo=1 Get binary package info: perl=5.32.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/perl/5.32.1-6/binfiles?fileinfo=1 Get binary package info: perl-base=5.32.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/perl-base/5.32.1-6/binfiles?fileinfo=1 Get binary package info: perl-modules-5.32=5.32.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/perl-modules-5.32/5.32.1-6/binfiles?fileinfo=1 Get binary package info: pkg-config=0.29.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/pkg-config/0.29.2-1/binfiles?fileinfo=1 Get binary package info: po-debconf=1.0.21+nmu1 Binary URL: http://snapshot.notset.fr/mr/binary/po-debconf/1.0.21+nmu1/binfiles?fileinfo=1 Get binary package info: rpcsvc-proto=1.4.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/rpcsvc-proto/1.4.2-4/binfiles?fileinfo=1 Get binary package info: sed=4.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/sed/4.8-1/binfiles?fileinfo=1 Get binary package info: sensible-utils=0.0.17 Binary URL: http://snapshot.notset.fr/mr/binary/sensible-utils/0.0.17/binfiles?fileinfo=1 Get binary package info: sysvinit-utils=3.00-1 Binary URL: http://snapshot.notset.fr/mr/binary/sysvinit-utils/3.00-1/binfiles?fileinfo=1 Get binary package info: tar=1.34+dfsg-1 Binary URL: http://snapshot.notset.fr/mr/binary/tar/1.34+dfsg-1/binfiles?fileinfo=1 Get binary package info: util-linux=2.37.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/util-linux/2.37.2-4/binfiles?fileinfo=1 Get binary package info: xz-utils=5.2.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/xz-utils/5.2.5-2/binfiles?fileinfo=1 Get binary package info: zlib1g=1:1.2.11.dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/zlib1g/1:1.2.11.dfsg-2/binfiles?fileinfo=1 Get binary package info: zlib1g-dev=1:1.2.11.dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/zlib1g-dev/1:1.2.11.dfsg-2/binfiles?fileinfo=1 Remaining packages to be found: 210 Timestamp source (77 packages): deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211025T025314Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210922T025414Z/ bookworm main Remaining packages to be found: 18 Timestamp source (5 packages): deb http://snapshot.notset.fr/archive/debian/20211108T025858Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211029T033902Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210902T030735Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211103T025035Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210830T143924Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210928T151606Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211105T024921Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210906T024530Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211102T034943Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210823T024636Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210828T025147Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210926T025629Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211023T025408Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210816T024705Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210901T090918Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211014T085745Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211022T024712Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211008T024925Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210927T025314Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210911T144836Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210930T025245Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211107T031827Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210909T025907Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210903T030245Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210822T144048Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210821T024315Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211016T025026Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211030T160902Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211017T024714Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211019T025145Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211009T024746Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211030T084351Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210827T030044Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211010T030012Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210822T023545Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210923T145517Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211012T212553Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210824T024320Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210928T025308Z/ bookworm main Remaining packages to be found: 13 Timestamp source (6 packages): deb http://snapshot.notset.fr/archive/debian/20211102T205550Z/ unstable main New buildinfo file: /tmp/phyml-3.3.20200621-3qbwubtyx/phyml_3.3.20200621-3_amd64.buildinfo env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser:all=3.118 autoconf:all=2.71-2 automake:all=1:1.16.5-1 autopoint:all=0.21-4 autotools-dev:all=20180224.1+nmu1 base-files:amd64=12 base-passwd:amd64=3.5.52 bash:amd64=5.1-3.1 binutils:amd64=2.37-8 binutils-common:amd64=2.37-8 binutils-x86-64-linux-gnu:amd64=2.37-8 bsdextrautils:amd64=2.37.2-4 bsdutils:amd64=1:2.37.2-4 build-essential:amd64=12.9 bzip2:amd64=1.0.8-4 chrpath:amd64=0.16-2+b1 coreutils:amd64=8.32-4.1 cpp:amd64=4:11.2.0-2 cpp-11:amd64=11.2.0-10 dash:amd64=0.5.11+git20210903+057cd650a4ed-3 debconf:all=1.5.79 debhelper:all=13.5.2 debianutils:amd64=5.5-1 dh-autoreconf:all=20 dh-strip-nondeterminism:all=1.12.0-2 diffutils:amd64=1:3.7-5 dpkg:amd64=1.20.9 dpkg-dev:all=1.20.9 dwz:amd64=0.14-1 file:amd64=1:5.39-3 findutils:amd64=4.8.0-1 g++:amd64=4:11.2.0-2 g++-11:amd64=11.2.0-10 gcc:amd64=4:11.2.0-2 gcc-11:amd64=11.2.0-10 gcc-11-base:amd64=11.2.0-10 gettext:amd64=0.21-4 gettext-base:amd64=0.21-4 gfortran-11:amd64=11.2.0-10 grep:amd64=3.7-1 groff-base:amd64=1.22.4-7 gzip:amd64=1.10-4 hostname:amd64=3.23 ibverbs-providers:amd64=36.0-1 init-system-helpers:all=1.60 intltool-debian:all=0.35.0+20060710.5 libacl1:amd64=2.3.1-1 libarchive-zip-perl:all=1.68-1 libasan6:amd64=11.2.0-10 libatomic1:amd64=11.2.0-10 libattr1:amd64=1:2.5.1-1 libaudit-common:all=1:3.0.6-1 libaudit1:amd64=1:3.0.6-1 libbinutils:amd64=2.37-8 libblkid1:amd64=2.37.2-4 libbsd0:amd64=0.11.3-1 libbz2-1.0:amd64=1.0.8-4 libc-bin:amd64=2.32-4 libc-dev-bin:amd64=2.32-4 libc6:amd64=2.32-4 libc6-dev:amd64=2.32-4 libcap-ng0:amd64=0.7.9-2.2+b1 libcap2:amd64=1:2.44-1 libcbor0.8:amd64=0.8.0-1 libcc1-0:amd64=11.2.0-10 libcom-err2:amd64=1.46.4-1 libcrypt-dev:amd64=1:4.4.25-2 libcrypt1:amd64=1:4.4.25-2 libctf-nobfd0:amd64=2.37-8 libctf0:amd64=2.37-8 libdb5.3:amd64=5.3.28+dfsg1-0.8 libdebconfclient0:amd64=0.260 libdebhelper-perl:all=13.5.2 libdpkg-perl:all=1.20.9 libedit2:amd64=3.1-20210910-1 libelf1:amd64=0.185-2 libevent-2.1-7:amd64=2.1.12-stable-1 libevent-core-2.1-7:amd64=2.1.12-stable-1 libevent-dev:amd64=2.1.12-stable-1 libevent-extra-2.1-7:amd64=2.1.12-stable-1 libevent-openssl-2.1-7:amd64=2.1.12-stable-1 libevent-pthreads-2.1-7:amd64=2.1.12-stable-1 libfabric1:amd64=1.11.0-2 libffi8:amd64=3.4.2-3 libfido2-1:amd64=1.9.0-1 libfile-stripnondeterminism-perl:all=1.12.0-2 libgcc-11-dev:amd64=11.2.0-10 libgcc-s1:amd64=11.2.0-10 libgcrypt20:amd64=1.9.4-3+b1 libgdbm-compat4:amd64=1.22-1 libgdbm6:amd64=1.22-1 libgfortran-11-dev:amd64=11.2.0-10 libgfortran5:amd64=11.2.0-10 libglib2.0-0:amd64=2.70.0-3 libgmp10:amd64=2:6.2.1+dfsg-2 libgomp1:amd64=11.2.0-10 libgpg-error0:amd64=1.42-3 libgssapi-krb5-2:amd64=1.18.3-7 libhwloc-dev:amd64=2.6.0-1 libhwloc-plugins:amd64=2.6.0-1 libhwloc15:amd64=2.6.0-1 libibverbs-dev:amd64=36.0-1 libibverbs1:amd64=36.0-1 libicu67:amd64=67.1-7 libisl23:amd64=0.24-2 libitm1:amd64=11.2.0-10 libjs-jquery:all=3.5.1+dfsg+~3.5.5-8 libjs-jquery-ui:all=1.12.1+dfsg-8 libk5crypto3:amd64=1.18.3-7 libkeyutils1:amd64=1.6.1-2 libkrb5-3:amd64=1.18.3-7 libkrb5support0:amd64=1.18.3-7 liblsan0:amd64=11.2.0-10 libltdl-dev:amd64=2.4.6-15 libltdl7:amd64=2.4.6-15 liblz4-1:amd64=1.9.3-2 liblzma5:amd64=5.2.5-2 libmagic-mgc:amd64=1:5.39-3 libmagic1:amd64=1:5.39-3 libmd0:amd64=1.0.4-1 libmount1:amd64=2.37.2-4 libmpc3:amd64=1.2.1-1 libmpfr6:amd64=4.1.0-3 libnl-3-200:amd64=3.4.0-1+b1 libnl-3-dev:amd64=3.4.0-1+b1 libnl-route-3-200:amd64=3.4.0-1+b1 libnl-route-3-dev:amd64=3.4.0-1+b1 libnsl-dev:amd64=1.3.0-2 libnsl2:amd64=1.3.0-2 libnuma-dev:amd64=2.0.14-3 libnuma1:amd64=2.0.14-3 libopenmpi-dev:amd64=4.1.2~rc1-5 libopenmpi3:amd64=4.1.2~rc1-5 libpam-modules:amd64=1.4.0-10 libpam-modules-bin:amd64=1.4.0-10 libpam-runtime:all=1.4.0-10 libpam0g:amd64=1.4.0-10 libpciaccess0:amd64=0.16-1 libpcre2-8-0:amd64=10.36-2 libpcre3:amd64=2:8.39-13 libperl5.32:amd64=5.32.1-6 libpipeline1:amd64=1.5.3-1 libpmix-dev:amd64=4.1.1~rc5-1 libpmix2:amd64=4.1.1~rc5-1 libpsm-infinipath1:amd64=3.3+20.604758e7-6.1 libpsm2-2:amd64=11.2.185-1 libquadmath0:amd64=11.2.0-10 librdmacm1:amd64=36.0-1 libseccomp2:amd64=2.5.2-2 libselinux1:amd64=3.1-3+b1 libsemanage-common:all=3.1-1 libsemanage1:amd64=3.1-1+b2 libsepol1:amd64=3.1-1 libsigsegv2:amd64=2.13-1 libsmartcols1:amd64=2.37.2-4 libssl1.1:amd64=1.1.1l-1 libstdc++-11-dev:amd64=11.2.0-10 libstdc++6:amd64=11.2.0-10 libsub-override-perl:all=0.09-2 libsystemd0:amd64=249.5-2 libtinfo6:amd64=6.2+20210905-1 libtirpc-common:all=1.3.2-2 libtirpc-dev:amd64=1.3.2-2 libtirpc3:amd64=1.3.2-2 libtool:all=2.4.6-15 libtsan0:amd64=11.2.0-10 libubsan1:amd64=11.2.0-10 libuchardet0:amd64=0.0.7-1 libucx0:amd64=1.11.2-1 libudev1:amd64=249.5-2 libunistring2:amd64=0.9.10-6 libuuid1:amd64=2.37.2-4 libx11-6:amd64=2:1.7.2-2+b1 libx11-data:all=2:1.7.2-2 libxau6:amd64=1:1.0.9-1 libxcb1:amd64=1.14-3 libxdmcp6:amd64=1:1.1.2-3 libxext6:amd64=2:1.3.4-1 libxml2:amd64=2.9.12+dfsg-5 libxnvctrl0:amd64=470.57.02-2 libzstd1:amd64=1.4.8+dfsg-3 linux-libc-dev:amd64=5.14.12-1 login:amd64=1:4.8.1-1.1 lsb-base:all=11.1.0 m4:amd64=1.4.18-5 make:amd64=4.3-4.1 man-db:amd64=2.9.4-2 mawk:amd64=1.3.4.20200120-2 ncurses-base:all=6.2+20210905-1 ncurses-bin:amd64=6.2+20210905-1 ocl-icd-libopencl1:amd64=2.2.14-3 openmpi-bin:amd64=4.1.2~rc1-5 openmpi-common:all=4.1.2~rc1-5 openssh-client:amd64=1:8.4p1-6 passwd:amd64=1:4.8.1-1.1 patch:amd64=2.7.6-7 perl:amd64=5.32.1-6 perl-base:amd64=5.32.1-6 perl-modules-5.32:all=5.32.1-6 pkg-config:amd64=0.29.2-1 po-debconf:all=1.0.21+nmu1 rpcsvc-proto:amd64=1.4.2-4 sed:amd64=4.8-1 sensible-utils:all=0.0.17 sysvinit-utils:amd64=3.00-1 tar:amd64=1.34+dfsg-1 util-linux:amd64=2.37.2-4 xz-utils:amd64=5.2.5-2 zlib1g:amd64=1:1.2.11.dfsg-2 zlib1g-dev:amd64=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211107T031827Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211107T031827Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211108T025858Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211102T205550Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d phyml=3:3.3.20200621-3 && mkdir -p /build/phyml-YV2zGU && dpkg-source --no-check -x /*.dsc /build/phyml-YV2zGU/phyml-3.3.20200621 && chown -R builduser:builduser /build/phyml-YV2zGU" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/phyml-YV2zGU/phyml-3.3.20200621 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1636064113" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/phyml-YV2zGU /tmp/phyml-3.3.20200621-3qbwubtyx bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.DTksmmVwyt as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.DTksmmVwyt Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-8). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (643 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4668 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-13) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211107T031827Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211107T031827Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211108T025858Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211102T205550Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.DTksmmVwyt Get:1 http://snapshot.notset.fr/archive/debian/20211107T031827Z bookworm InRelease [128 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease Get:3 http://snapshot.notset.fr/archive/debian/20211108T025858Z bookworm InRelease [128 kB] Get:4 http://snapshot.notset.fr/archive/debian/20211102T205550Z unstable InRelease [165 kB] Ign:5 http://snapshot.notset.fr/archive/debian/20211107T031827Z bookworm/main Sources Ign:6 http://snapshot.notset.fr/archive/debian/20211107T031827Z bookworm/main amd64 Packages Ign:5 http://snapshot.notset.fr/archive/debian/20211107T031827Z bookworm/main Sources Ign:6 http://snapshot.notset.fr/archive/debian/20211107T031827Z bookworm/main amd64 Packages Ign:5 http://snapshot.notset.fr/archive/debian/20211107T031827Z bookworm/main Sources Ign:6 http://snapshot.notset.fr/archive/debian/20211107T031827Z bookworm/main amd64 Packages Get:5 http://snapshot.notset.fr/archive/debian/20211107T031827Z bookworm/main Sources [11.7 MB] Get:6 http://snapshot.notset.fr/archive/debian/20211107T031827Z bookworm/main amd64 Packages [11.2 MB] Ign:7 http://snapshot.notset.fr/archive/debian/20211108T025858Z bookworm/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20211102T205550Z unstable/main amd64 Packages Ign:7 http://snapshot.notset.fr/archive/debian/20211108T025858Z bookworm/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20211102T205550Z unstable/main amd64 Packages Ign:7 http://snapshot.notset.fr/archive/debian/20211108T025858Z bookworm/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20211102T205550Z unstable/main amd64 Packages Get:7 http://snapshot.notset.fr/archive/debian/20211108T025858Z bookworm/main amd64 Packages [11.2 MB] Get:8 http://snapshot.notset.fr/archive/debian/20211102T205550Z unstable/main amd64 Packages [11.9 MB] Fetched 46.4 MB in 45s (1028 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.DTksmmVwyt I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d phyml=3:3.3.20200621-3 && mkdir -p /build/phyml-YV2zGU && dpkg-source --no-check -x /*.dsc /build/phyml-YV2zGU/phyml-3.3.20200621 && chown -R builduser:builduser /build/phyml-YV2zGU"' exec /tmp/mmdebstrap.DTksmmVwyt Reading package lists... NOTICE: 'phyml' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/phyml.git Please use: git clone https://salsa.debian.org/med-team/phyml.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2255 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211107T031827Z bookworm/main phyml 3:3.3.20200621-3 (dsc) [2098 B] Get:2 http://snapshot.notset.fr/archive/debian/20211107T031827Z bookworm/main phyml 3:3.3.20200621-3 (tar) [2235 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211107T031827Z bookworm/main phyml 3:3.3.20200621-3 (diff) [17.6 kB] Fetched 2255 kB in 2s (1184 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'phyml_3.3.20200621-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting phyml in /build/phyml-YV2zGU/phyml-3.3.20200621 dpkg-source: info: unpacking phyml_3.3.20200621.orig.tar.gz dpkg-source: info: unpacking phyml_3.3.20200621-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying sse_only_if_supported.patch dpkg-source: info: applying no-stdc++.patch dpkg-source: info: applying no-configure-ac-date.patch dpkg-source: info: applying fix_declaration_of_temp.patch dpkg-source: info: applying fix_wrong_initialisation_of_array.patch dpkg-source: info: applying no-march-native.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying nodup-am-init-automake.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/phyml-YV2zGU/phyml-3.3.20200621 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1636064113" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.DTksmmVwyt dpkg-buildpackage: info: source package phyml dpkg-buildpackage: info: source version 3:3.3.20200621-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' # save pdf from cleaning mv doc/phyml-manual.pdf . dh_auto_clean mv phyml-manual.pdf doc # remove temporary bin dir for phyml (see above hack) rm -rf debian/bin rm -rf doc/Makefile make[1]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' dh_autoreconf --as-needed configure.ac:33: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:33: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:33: the top level configure.ac:54: warning: The macro `AC_FUNC_SETVBUF_REVERSED' is obsolete. Remove it and all references to SETVBUF_REVERSED. ./lib/autoconf/functions.m4:1766: AC_FUNC_SETVBUF_REVERSED is expanded from... configure.ac:54: the top level configure.ac:16: installing './compile' configure.ac:14: installing './config.guess' configure.ac:14: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' src/Makefile.am: installing './depcomp' make[1]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' debian/rules override_dh_auto_build make[1]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' # According to README you need different configure options to get different executables # Here we hack in a full build process for phyml executable # The hack includes saving the documentation from beeing cleaned up mv doc/phyml-manual.pdf . dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none configure: "On arch x86_64-pc-linux-gnu use MSSE = -msse" checking for log in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -- LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j4 "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' make all-recursive make[3]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' Making all in src make[4]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621/src' gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o main.o main.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o utilities.o utilities.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o optimiz.o optimiz.c .: Building [phyml]. Version 3.3.3:3.3.20200621-3 :. gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o lk.o lk.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o bionj.o bionj.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o models.o models.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o free.o free.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o help.o help.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o simu.o simu.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o eigen.o eigen.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o pars.o pars.c utilities.c: In function ‘Assign_State_With_Ambiguity’: utilities.c:3073:29: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=] 3073 | sprintf(format,"%%%dd",stepsize); | ^~ utilities.c:3073:26: note: directive argument in the range [0, 2147483647] 3073 | sprintf(format,"%%%dd",stepsize); | ^~~~~~~ In file included from /usr/include/stdio.h:866, from utilities.h:21, from utilities.c:12: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 6 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o alrt.o alrt.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o interface.o interface.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o cl.o cl.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o spr.o spr.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o draw.o draw.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o stats.o stats.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o rates.o rates.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o mcmc.o mcmc.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o times.o times.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o tiporder.o tiporder.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o io.o io.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o make.o make.c io.c: In function ‘Sub_Trees’: io.c:513:25: warning: ‘subs’ may be used uninitialized in this function [-Wmaybe-uninitialized] 513 | subs = (char **)mRealloc(subs,*degree+1,sizeof(char *)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o nexus.o nexus.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o init.o init.c io.c: In function ‘Print_Fp_Out’: io.c:2315:47: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 6 [-Wformat-truncation=] 2315 | if (precision > 0) snprintf (format, 8, "%%.%df", precision); | ^~ io.c:2315:43: note: directive argument in the range [1, 2147483647] 2315 | if (precision > 0) snprintf (format, 8, "%%.%df", precision); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from utilities.h:21, from io.h:18, from io.c:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:10: note: ‘__builtin___snprintf_chk’ output between 5 and 14 bytes into a destination of size 8 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o xml.o xml.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o date.o date.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o sse.o sse.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o avx.o avx.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o tbe.o tbe.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o ancestral.o ancestral.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o mixt.o mixt.c gcc -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -Wl,-z,relro -Wl,-z,now -o phyml main.o utilities.o optimiz.o lk.o bionj.o models.o free.o help.o simu.o eigen.o pars.o alrt.o interface.o cl.o spr.o draw.o stats.o rates.o mcmc.o times.o tiporder.o io.o make.o nexus.o init.o xml.o date.o sse.o avx.o tbe.o ancestral.o mixt.o -lm -lm Done. make[4]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621/src' make[4]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' make[4]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' make[3]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' make[2]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' # move phyml binary to temporary dir inside debian/ mkdir -p /build/phyml-YV2zGU/phyml-3.3.20200621/debian/bin mv src/phyml /build/phyml-YV2zGU/phyml-3.3.20200621/debian/bin/phyml /usr/bin/make distclean make[2]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' Making distclean in src make[3]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621/src' test -z "phyml" || rm -f phyml rm -f *.o rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f ./.deps/alrt.Po rm -f ./.deps/ancestral.Po rm -f ./.deps/avx.Po rm -f ./.deps/beagle_utils.Po rm -f ./.deps/bionj.Po rm -f ./.deps/checkpoint.Po rm -f ./.deps/cl.Po rm -f ./.deps/date.Po rm -f ./.deps/draw.Po rm -f ./.deps/eigen.Po rm -f ./.deps/free.Po rm -f ./.deps/geo.Po rm -f ./.deps/help.Po rm -f ./.deps/init.Po rm -f ./.deps/interface.Po rm -f ./.deps/invitee.Po rm -f ./.deps/io.Po rm -f ./.deps/lk.Po rm -f ./.deps/main.Po rm -f ./.deps/make.Po rm -f ./.deps/mcmc.Po rm -f ./.deps/mg.Po rm -f ./.deps/mixt.Po rm -f ./.deps/models.Po rm -f ./.deps/nexus.Po rm -f ./.deps/optimiz.Po rm -f ./.deps/pars.Po rm -f ./.deps/phyml_mpi-alrt.Po rm -f ./.deps/phyml_mpi-ancestral.Po rm -f ./.deps/phyml_mpi-avx.Po rm -f ./.deps/phyml_mpi-bionj.Po rm -f ./.deps/phyml_mpi-cl.Po rm -f ./.deps/phyml_mpi-date.Po rm -f ./.deps/phyml_mpi-draw.Po rm -f ./.deps/phyml_mpi-eigen.Po rm -f ./.deps/phyml_mpi-free.Po rm -f ./.deps/phyml_mpi-help.Po rm -f ./.deps/phyml_mpi-init.Po rm -f ./.deps/phyml_mpi-interface.Po rm -f ./.deps/phyml_mpi-io.Po rm -f ./.deps/phyml_mpi-lk.Po rm -f ./.deps/phyml_mpi-main.Po rm -f ./.deps/phyml_mpi-make.Po rm -f ./.deps/phyml_mpi-mcmc.Po rm -f ./.deps/phyml_mpi-mg.Po rm -f ./.deps/phyml_mpi-mixt.Po rm -f ./.deps/phyml_mpi-models.Po rm -f ./.deps/phyml_mpi-mpi_boot.Po rm -f ./.deps/phyml_mpi-nexus.Po rm -f ./.deps/phyml_mpi-optimiz.Po rm -f ./.deps/phyml_mpi-pars.Po rm -f ./.deps/phyml_mpi-rates.Po rm -f ./.deps/phyml_mpi-simu.Po rm -f ./.deps/phyml_mpi-spr.Po rm -f ./.deps/phyml_mpi-sse.Po rm -f ./.deps/phyml_mpi-stats.Po rm -f ./.deps/phyml_mpi-tbe.Po rm -f ./.deps/phyml_mpi-times.Po rm -f ./.deps/phyml_mpi-tiporder.Po rm -f ./.deps/phyml_mpi-utilities.Po rm -f ./.deps/phyml_mpi-xml.Po rm -f ./.deps/phyrex.Po rm -f ./.deps/rates.Po rm -f ./.deps/rrw.Po rm -f ./.deps/rw.Po rm -f ./.deps/simu.Po rm -f ./.deps/slfv.Po rm -f ./.deps/spr.Po rm -f ./.deps/sse.Po rm -f ./.deps/stats.Po rm -f ./.deps/tbe.Po rm -f ./.deps/times.Po rm -f ./.deps/tiporder.Po rm -f ./.deps/utilities.Po rm -f ./.deps/xml.Po rm -f Makefile make[3]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621/src' make[3]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f config.h stamp-h1 rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f cscope.out cscope.in.out cscope.po.out cscope.files make[3]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' rm -f config.status config.cache config.log configure.lineno config.status.lineno rm -f Makefile make[2]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' dh_auto_configure -- --enable-mpi ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-mpi checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none configure: "On arch x86_64-pc-linux-gnu use MSSE = -msse" checking for log in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for mpi-c... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -- LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j4 "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' make all-recursive make[3]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' Making all in src make[4]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621/src' gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-main.o `test -f 'main.c' || echo './'`main.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-utilities.o `test -f 'utilities.c' || echo './'`utilities.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-optimiz.o `test -f 'optimiz.c' || echo './'`optimiz.c .: Building [phyml-mpi]. Version 3.3.3:3.3.20200621-3 :. gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-lk.o `test -f 'lk.c' || echo './'`lk.c In file included from lk.h:18, from lk.c:14: utilities.h:18: warning: "_POSIX_C_SOURCE" redefined 18 | #define _POSIX_C_SOURCE 200112L | In file included from /usr/include/assert.h:35, from lk.c:13: /usr/include/features.h:310: note: this is the location of the previous definition 310 | # define _POSIX_C_SOURCE 199506L | gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-bionj.o `test -f 'bionj.c' || echo './'`bionj.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-models.o `test -f 'models.c' || echo './'`models.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-free.o `test -f 'free.c' || echo './'`free.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-help.o `test -f 'help.c' || echo './'`help.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-simu.o `test -f 'simu.c' || echo './'`simu.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-eigen.o `test -f 'eigen.c' || echo './'`eigen.c utilities.c: In function ‘Assign_State_With_Ambiguity’: utilities.c:3073:29: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=] 3073 | sprintf(format,"%%%dd",stepsize); | ^~ utilities.c:3073:26: note: directive argument in the range [0, 2147483647] 3073 | sprintf(format,"%%%dd",stepsize); | ^~~~~~~ In file included from /usr/include/stdio.h:866, from utilities.h:21, from utilities.c:12: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 6 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-pars.o `test -f 'pars.c' || echo './'`pars.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-alrt.o `test -f 'alrt.c' || echo './'`alrt.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-interface.o `test -f 'interface.c' || echo './'`interface.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-cl.o `test -f 'cl.c' || echo './'`cl.c In file included from cl.h:21, from cl.c:13: utilities.h:18: warning: "_POSIX_C_SOURCE" redefined 18 | #define _POSIX_C_SOURCE 200112L | In file included from /usr/include/unistd.h:25, from cl.h:19, from cl.c:13: /usr/include/features.h:310: note: this is the location of the previous definition 310 | # define _POSIX_C_SOURCE 199506L | gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-spr.o `test -f 'spr.c' || echo './'`spr.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-draw.o `test -f 'draw.c' || echo './'`draw.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-stats.o `test -f 'stats.c' || echo './'`stats.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-rates.o `test -f 'rates.c' || echo './'`rates.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-mcmc.o `test -f 'mcmc.c' || echo './'`mcmc.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-times.o `test -f 'times.c' || echo './'`times.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-tiporder.o `test -f 'tiporder.c' || echo './'`tiporder.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-mg.o `test -f 'mg.c' || echo './'`mg.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-io.o `test -f 'io.c' || echo './'`io.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-make.o `test -f 'make.c' || echo './'`make.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-nexus.o `test -f 'nexus.c' || echo './'`nexus.c io.c: In function ‘Sub_Trees’: io.c:513:25: warning: ‘subs’ may be used uninitialized in this function [-Wmaybe-uninitialized] 513 | subs = (char **)mRealloc(subs,*degree+1,sizeof(char *)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-init.o `test -f 'init.c' || echo './'`init.c io.c: In function ‘Print_Fp_Out’: io.c:2315:47: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 6 [-Wformat-truncation=] 2315 | if (precision > 0) snprintf (format, 8, "%%.%df", precision); | ^~ io.c:2315:43: note: directive argument in the range [1, 2147483647] 2315 | if (precision > 0) snprintf (format, 8, "%%.%df", precision); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from utilities.h:21, from io.h:18, from io.c:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:10: note: ‘__builtin___snprintf_chk’ output between 5 and 14 bytes into a destination of size 8 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-xml.o `test -f 'xml.c' || echo './'`xml.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-mixt.o `test -f 'mixt.c' || echo './'`mixt.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-tbe.o `test -f 'tbe.c' || echo './'`tbe.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-date.o `test -f 'date.c' || echo './'`date.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-sse.o `test -f 'sse.c' || echo './'`sse.c In file included from sse.h:18, from sse.c:14: utilities.h:18: warning: "_POSIX_C_SOURCE" redefined 18 | #define _POSIX_C_SOURCE 200112L | In file included from /usr/include/assert.h:35, from sse.c:13: /usr/include/features.h:310: note: this is the location of the previous definition 310 | # define _POSIX_C_SOURCE 199506L | gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-avx.o `test -f 'avx.c' || echo './'`avx.c In file included from avx.h:18, from avx.c:14: utilities.h:18: warning: "_POSIX_C_SOURCE" redefined 18 | #define _POSIX_C_SOURCE 200112L | In file included from /usr/include/assert.h:35, from avx.c:13: /usr/include/features.h:310: note: this is the location of the previous definition 310 | # define _POSIX_C_SOURCE 199506L | gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-ancestral.o `test -f 'ancestral.c' || echo './'`ancestral.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-mpi_boot.o `test -f 'mpi_boot.c' || echo './'`mpi_boot.c gcc -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -Wl,-z,relro -Wl,-z,now -o phyml-mpi phyml_mpi-main.o phyml_mpi-utilities.o phyml_mpi-optimiz.o phyml_mpi-lk.o phyml_mpi-bionj.o phyml_mpi-models.o phyml_mpi-free.o phyml_mpi-help.o phyml_mpi-simu.o phyml_mpi-eigen.o phyml_mpi-pars.o phyml_mpi-alrt.o phyml_mpi-interface.o phyml_mpi-cl.o phyml_mpi-spr.o phyml_mpi-draw.o phyml_mpi-stats.o phyml_mpi-rates.o phyml_mpi-mcmc.o phyml_mpi-times.o phyml_mpi-tiporder.o phyml_mpi-mg.o phyml_mpi-io.o phyml_mpi-make.o phyml_mpi-nexus.o phyml_mpi-init.o phyml_mpi-xml.o phyml_mpi-mixt.o phyml_mpi-tbe.o phyml_mpi-date.o phyml_mpi-sse.o phyml_mpi-avx.o phyml_mpi-ancestral.o phyml_mpi-mpi_boot.o -lm -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -lm Done. make[4]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621/src' make[4]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' make[4]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' make[3]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' make[2]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' # move phyml binary to temporary dir inside debian/ # mkdir -p /build/phyml-YV2zGU/phyml-3.3.20200621/debian/bin mv src/phyml-mpi /build/phyml-YV2zGU/phyml-3.3.20200621/debian/bin/phyml-mpi mv phyml-manual.pdf doc make[1]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' Making check in src make[2]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621/src' gcc -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -o phyml-mpi phyml_mpi-main.o phyml_mpi-utilities.o phyml_mpi-optimiz.o phyml_mpi-lk.o phyml_mpi-bionj.o phyml_mpi-models.o phyml_mpi-free.o phyml_mpi-help.o phyml_mpi-simu.o phyml_mpi-eigen.o phyml_mpi-pars.o phyml_mpi-alrt.o phyml_mpi-interface.o phyml_mpi-cl.o phyml_mpi-spr.o phyml_mpi-draw.o phyml_mpi-stats.o phyml_mpi-rates.o phyml_mpi-mcmc.o phyml_mpi-times.o phyml_mpi-tiporder.o phyml_mpi-mg.o phyml_mpi-io.o phyml_mpi-make.o phyml_mpi-nexus.o phyml_mpi-init.o phyml_mpi-xml.o phyml_mpi-mixt.o phyml_mpi-tbe.o phyml_mpi-date.o phyml_mpi-sse.o phyml_mpi-avx.o phyml_mpi-ancestral.o phyml_mpi-mpi_boot.o -lm -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -lm .: Building [phyml-mpi]. Version 3.3.3:3.3.20200621-3 :. Done. make[2]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621/src' make[2]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' make[2]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' make[1]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' dh_auto_install make -j4 install DESTDIR=/build/phyml-YV2zGU/phyml-3.3.20200621/debian/phyml AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' Making install in src make[3]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621/src' .: Building [phyml-mpi]. Version 3.3.3:3.3.20200621-3 :. Done. make[4]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621/src' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/phyml-YV2zGU/phyml-3.3.20200621/debian/phyml/usr/bin' /usr/bin/install -c phyml-mpi '/build/phyml-YV2zGU/phyml-3.3.20200621/debian/phyml/usr/bin' make[4]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621/src' make[3]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621/src' make[3]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' make[4]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' make[3]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' make[2]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' # install phyml binary we have kept safe above mkdir -p /build/phyml-YV2zGU/phyml-3.3.20200621/debian/phyml/usr/lib/phyml/bin mv /build/phyml-YV2zGU/phyml-3.3.20200621/debian/bin/* /build/phyml-YV2zGU/phyml-3.3.20200621/debian/phyml/usr/lib/phyml/bin chrpath --delete debian/phyml/usr/lib/phyml/bin/phyml* make[1]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' dh_install -a debian/rules override_dh_installdocs make[1]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' dh_installdocs mv /build/phyml-YV2zGU/phyml-3.3.20200621/debian/phyml/usr/share/doc/phyml/phyml-manual.pdf /build/phyml-YV2zGU/phyml-3.3.20200621/debian/phyml/usr/share/doc/phyml/phyml_manual.pdf make[1]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' debian/rules override_dh_fixperms make[1]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' dh_fixperms find debian/*/usr/share/doc -name "*.nxs" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.xml" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.mat" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.txt" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' dh_missing -a debian/rules override_dh_dwz make[1]: Entering directory '/build/phyml-YV2zGU/phyml-3.3.20200621' echo "Do not run dh_dwz" Do not run dh_dwz make[1]: Leaving directory '/build/phyml-YV2zGU/phyml-3.3.20200621' dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'phyml' in '../phyml_3.3.20200621-3_amd64.deb'. dpkg-deb: building package 'phyml-dbgsym' in '../phyml-dbgsym_3.3.20200621-3_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../phyml_3.3.20200621-3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/phyml-YV2zGU /tmp/phyml-3.3.20200621-3qbwubtyx I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.DTksmmVwyt... I: success in 3777.2816 seconds md5: phyml-dbgsym_3.3.20200621-3_amd64.deb: OK md5: phyml_3.3.20200621-3_amd64.deb: OK sha1: phyml-dbgsym_3.3.20200621-3_amd64.deb: OK sha1: phyml_3.3.20200621-3_amd64.deb: OK sha256: phyml-dbgsym_3.3.20200621-3_amd64.deb: OK sha256: phyml_3.3.20200621-3_amd64.deb: OK Checksums: OK