Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/pftools/pftools_3.2.6-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/pftools-3.2.6-1es56kg25/pftools_3.2.6-1_amd64.buildinfo Get source package info: pftools=3.2.6-1 Source URL: http://snapshot.notset.fr/mr/package/pftools/3.2.6-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-12 automake=1:1.16.3-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1-1 binutils=2.35.1-4 binutils-common=2.35.1-4 binutils-x86-64-linux-gnu=2.35.1-4 bsdextrautils=2.36.1-2 bsdutils=1:2.36.1-2 build-essential=12.8 bzip2=1.0.8-4 cmake=3.18.4-1+b1 cmake-data=3.18.4-1 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.1-1 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13+20201015-2 file=1:5.39-3 findutils=4.7.0+git20201010-2 g++=4:10.2.0-1 g++-10=10.2.1-1 gcc=4:10.2.0-1 gcc-10=10.2.1-1 gcc-10-base=10.2.1-1 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gfortran=4:10.2.0-1 gfortran-10=10.2.1-1 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2 libasan6=10.2.1-1 libatomic1=10.2.1-1 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1+b1 libbinutils=2.35.1-4 libblkid1=2.36.1-2 libbrotli1=1.0.9-2+b2 libbz2-1.0=1.0.8-4 libbz2-dev=1.0.8-4 libc-bin=2.31-5 libc-dev-bin=2.31-5 libc6=2.31-5 libc6-dev=2.31-5 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-1 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-4 libctf0=2.35.1-4 libcurl4=7.72.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.3 libdpkg-perl=1.20.5 libelf1=0.182-1 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-slurp-perl=9999.32-1 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.1-1 libgcc-s1=10.2.1-1 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran-10-dev=10.2.1-1 libgfortran5=10.2.1-1 libglib2.0-0=2.66.3-2 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-3 libgomp1=10.2.1-1 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libhogweed6=3.6-2 libicu67=67.1-5 libidn2-0=2.3.0-4 libisl23=0.23-1 libitm1=10.2.1-1 libjsoncpp24=1.9.4-4 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 libldap-2.4-2=2.4.56+dfsg-1 liblsan0=10.2.1-1 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses-dev=6.2+20201114-1 libncurses6=6.2+20201114-1 libncursesw6=6.2+20201114-1 libnettle8=3.6-2 libnghttp2-14=1.42.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.23.22-1 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre16-3=2:8.39-13 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libpcre3-dev=2:8.39-13 libpcre32-3=2:8.39-13 libpcrecpp0v5=2:8.39-13 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libprocps8=2:3.3.16-5 libpsl5=0.21.0-1.1 libquadmath0=10.2.1-1 libreadline-dev=8.1-1 libreadline8=8.1-1 librhash0=1.4.0-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.0-3+b1 libselinux1=3.1-2+b2 libsigsegv2=2.12-3 libsmartcols1=2.36.1-2 libssh2-1=1.9.0-2 libssl1.1=1.1.1i-1 libstdc++-10-dev=10.2.1-1 libstdc++6=10.2.1-1 libsub-override-perl=0.09-2 libsystemd0=247.1-4 libtasn1-6=4.16.0-2 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.1-1 libubsan1=10.2.1-1 libuchardet0=0.0.7-1 libudev1=247.1-4 libunistring2=0.9.10-4 libuuid1=2.36.1-2 libuv1=1.40.0-1 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 patch=2.7.6-6 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 po-debconf=1.0.21 procps=2:3.3.16-5 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 util-linux=2.36.1-2 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210201T084000Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201216T205250Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d pftools=3.2.6-1 && mkdir -p /build/pftools-XIxtvT && dpkg-source --no-check -x /*.dsc /build/pftools-XIxtvT/pftools-3.2.6 && chown -R builduser:builduser /build/pftools-XIxtvT" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pftools-XIxtvT/pftools-3.2.6 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1608280223" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/pftools-XIxtvT /tmp/pftools-3.2.6-1es56kg25 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201216T205250Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.FE9Dseahcn as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.FE9Dseahcn Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201216T205250Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201216T205250Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1091 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4621 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210201T084000Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201216T205250Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.FE9Dseahcn Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210201T084000Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20201216T205250Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210201T084000Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210201T084000Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210201T084000Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210201T084000Z unstable/main amd64 Packages [11.7 MB] Fetched 34.4 MB in 29s (1174 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.FE9Dseahcn I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d pftools=3.2.6-1 && mkdir -p /build/pftools-XIxtvT && dpkg-source --no-check -x /*.dsc /build/pftools-XIxtvT/pftools-3.2.6 && chown -R builduser:builduser /build/pftools-XIxtvT"' exec /tmp/mmdebstrap.FE9Dseahcn Reading package lists... NOTICE: 'pftools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pftools.git Please use: git clone https://salsa.debian.org/med-team/pftools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 44.1 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main pftools 3.2.6-1 (dsc) [2061 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main pftools 3.2.6-1 (tar) [44.0 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main pftools 3.2.6-1 (diff) [9252 B] Fetched 44.1 MB in 36s (1207 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'pftools_3.2.6-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting pftools in /build/pftools-XIxtvT/pftools-3.2.6 dpkg-source: info: unpacking pftools_3.2.6.orig.tar.gz dpkg-source: info: unpacking pftools_3.2.6-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying 0001-Harmonize-bin-env-path-Cleaning.patch dpkg-source: info: applying fix_perl_interpreter.patch dpkg-source: info: applying destdir_for_examples.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/pftools-XIxtvT/pftools-3.2.6 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1608280223" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.FE9Dseahcn dpkg-buildpackage: info: source package pftools dpkg-buildpackage: info: source version 3.2.6-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6' dh_auto_clean rm -rf data/test.* make[1]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6' if [ ! -e src/C/config.h.cmake ] ; then cp -a debian/missing-sources/config.h.cmake src/C/ ; fi dh_auto_configure cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- +--------------------------------------------------------------------+ -- | PfTools v3.2.6 | -- +--------------------------------------------------------------------+ -- | (C) Copyright SIB Swiss Institute of Bioinformatics | -- | Thierry Schuepbach (projects@vital-it.ch) | -- | | -- | PfTools is available from | -- | https://github.com/sib-swiss/pftools3 | -- | under the GPL v2. See LICENSE. | -- | | -- +--------------------------------------------------------------------+ -- The Fortran compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/bin/f95 - skipped -- Checking whether /usr/bin/f95 supports Fortran 90 -- Checking whether /usr/bin/f95 supports Fortran 90 - yes -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Compilation on architecture x86_64. -- Performing Test HANDLE_SSE -- Performing Test HANDLE_SSE - Success -- Performing Test HANDLE_SSE2 -- Performing Test HANDLE_SSE2 - Success -- testing flag -msse4.1... -- Performing Test HANDLE_SSE41 -- Performing Test HANDLE_SSE41 - Success -- Performing Test HANDLE_C99 -- Performing Test HANDLE_C99 - Success -- Add -std=c99 to C compiler options -- Add SSE2 to C compiler options -- Performing Test MS_EXTENSION -- Performing Test MS_EXTENSION - Success -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found Perl: /usr/bin/perl (found version "5.32.0") -- Perl found - full test suite usable -- Found PCRE: /usr/lib/x86_64-linux-gnu/libpcre.so -- Looking for include file emmintrin.h -- Looking for include file emmintrin.h - found -- Looking for include file smmintrin.h -- Looking for include file smmintrin.h - found -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file alloca.h -- Looking for include file alloca.h - found -- Check Perl script syntax compare_2_profiles.pl - syntax OK fasta_to_fastq.pl - syntax OK make_iupac_cmp.pl - syntax OK ps_scan.pl - syntax OK scramble_fasta.pl - syntax OK sort_fasta.pl - syntax OK split_profile_file.pl - syntax OK -- -- PfTools Software Suite configuration summary: -- -- System name ......................: Linux -- Build type .......................: None -- -- Integer format ...................: 16 bits -- -- Install prefix .................. : /usr -- C compiler ...................... : /usr/bin/cc -- Fortran compiler ................ : /usr/bin/f95 -- C compiler flags ................ : -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -- C compiler SSE2 flag. ........... : -msse2 -- C compiler SSE 4.1 flag.......... : -msse4.1 -- Fortran compiler flags .......... : -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -- -- Use file memory mapping ..........: ON -- Use thread affinity setting ......: ON -- -- Build shared libs ............... : OFF -- Build static libs ............... : OFF -- Build static executables......... : OFF -- -- Link with pcre .................. : ON -- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6' dh_auto_build -a cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/pftools-XIxtvT/pftools-3.2.6 -B/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 Re-run cmake, missing byproduct: Tests/examples/test_V2.sh.tmp -- +--------------------------------------------------------------------+ -- | PfTools v3.2.6 | -- +--------------------------------------------------------------------+ -- | (C) Copyright SIB Swiss Institute of Bioinformatics | -- | Thierry Schuepbach (projects@vital-it.ch) | -- | | -- | PfTools is available from | -- | https://github.com/sib-swiss/pftools3 | -- | under the GPL v2. See LICENSE. | -- | | -- +--------------------------------------------------------------------+ -- Compilation on architecture x86_64. -- testing flag -msse4.1... -- Add -std=c99 to C compiler options -- Add SSE2 to C compiler options -- Perl found - full test suite usable -- Building test suite for pfsearch in /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/Tests -- Check Perl script syntax compare_2_profiles.pl - syntax OK fasta_to_fastq.pl - syntax OK make_iupac_cmp.pl - syntax OK ps_scan.pl - syntax OK scramble_fasta.pl - syntax OK sort_fasta.pl - syntax OK split_profile_file.pl - syntax OK -- -- PfTools Software Suite configuration summary: -- -- System name ......................: Linux -- Build type .......................: None -- -- Integer format ...................: 16 bits -- -- Install prefix .................. : /usr -- C compiler ...................... : /usr/bin/cc -- Fortran compiler ................ : /usr/bin/f95 -- C compiler flags ................ : -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -- C compiler SSE2 flag. ........... : -msse2 -- C compiler SSE 4.1 flag.......... : -msse4.1 -- Fortran compiler flags .......... : -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -- -- Use file memory mapping ..........: ON -- Use thread affinity setting ......: ON -- -- Build shared libs ............... : OFF -- Build static libs ............... : OFF -- Build static executables......... : OFF -- -- Link with pcre .................. : ON -- -- Configuring done -- Generating done -- Build files have been written to: /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /usr/bin/cmake -E cmake_progress_start /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/CMakeFiles /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/REGEXP.dir/build.make src/C/CMakeFiles/REGEXP.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/REGEXP.dir/DependInfo.cmake --color= make -f src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build.make src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/DependInfo.cmake --color= make -f src/C/sse2/CMakeFiles/SSE2.dir/build.make src/C/sse2/CMakeFiles/SSE2.dir/depend make -f src/C/sse41/CMakeFiles/SSE41.dir/build.make src/C/sse41/CMakeFiles/SSE41.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C/sse2 /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C/sse41 /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/REGEXP.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/REGEXP.dir/depend.internal". 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Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/depend.internal". make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' Scanning dependencies of target SSE41 make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/sse41/CMakeFiles/SSE41.dir/build.make src/C/sse41/CMakeFiles/SSE41.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 1%] Building C object src/C/CMakeFiles/REGEXP.dir/utils/pfregexp.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -I/usr/include -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/pfregexp.c [ 2%] Building C object src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/OUTPUT_FORMAT.dir/output.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/output.c [ 4%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o [ 5%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/heuristic_sse41.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/sse41/heuristic_sse41.c cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/heuristic_sse2.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/sse2/heuristic_sse2.c make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 7%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/xali1_sse2.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/sse2/xali1_sse2.c [ 7%] Built target REGEXP make -f src/C/utils/CMakeFiles/PROFILES.dir/build.make src/C/utils/CMakeFiles/PROFILES.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/depend.internal". Scanning dependencies of target PROFILES make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/utils/CMakeFiles/PROFILES.dir/build.make src/C/utils/CMakeFiles/PROFILES.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 8%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/io.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/PROFILES.dir/io.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/io.c [ 10%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/xali1_sse41.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/sse41/xali1_sse41.c [ 11%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/xalip_sse2.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/sse2/xalip_sse2.c [ 13%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/xalip_sse41.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/sse41/xalip_sse41.c make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 13%] Built target OUTPUT_FORMAT make -f src/C/utils/CMakeFiles/SYSTEM.dir/build.make src/C/utils/CMakeFiles/SYSTEM.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/depend.internal". Scanning dependencies of target SYSTEM make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/utils/CMakeFiles/SYSTEM.dir/build.make src/C/utils/CMakeFiles/SYSTEM.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 14%] Building C object src/C/utils/CMakeFiles/SYSTEM.dir/system.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/SYSTEM.dir/system.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/system.c [ 16%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/xalit_sse2.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/sse2/xalit_sse2.c [ 17%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/xalit_sse41.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/sse41/xalit_sse41.c make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 17%] Built target SSE41 make -f src/C/utils/CMakeFiles/SEQUENCES.dir/build.make src/C/utils/CMakeFiles/SEQUENCES.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES.dir/DependInfo.cmake --color= [ 17%] Built target SSE2 make -f src/C/CMakeFiles/pfpam.dir/build.make src/C/CMakeFiles/pfpam.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES.dir/depend.internal". Scanning dependencies of target SEQUENCES make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/utils/CMakeFiles/SEQUENCES.dir/build.make src/C/utils/CMakeFiles/SEQUENCES.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/depend.internal". Scanning dependencies of target pfpam make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfpam.dir/build.make src/C/CMakeFiles/pfpam.dir/build [ 19%] Building C object src/C/utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/SEQUENCES.dir/ReadSequence.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/ReadSequence.c make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 20%] Building C object src/C/CMakeFiles/pfpam.dir/utils/pam.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfpam.dir/utils/pam.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/pam.c make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 20%] Built target SYSTEM make -f src/Fortran/CMakeFiles/quantile.dir/build.make src/Fortran/CMakeFiles/quantile.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/depend.internal". Scanning dependencies of target quantile make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/quantile.dir/build.make src/Fortran/CMakeFiles/quantile.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 22%] Building Fortran object src/Fortran/CMakeFiles/quantile.dir/rq0.f.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/rq0.f -o CMakeFiles/quantile.dir/rq0.f.o make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 22%] Built target SEQUENCES [ 23%] Building C object src/C/CMakeFiles/pfpam.dir/utils/io.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfpam.dir/utils/io.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/io.c [ 25%] Building C object src/C/CMakeFiles/pfpam.dir/utils/random.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfpam.dir/utils/random.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/random.c make -f src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build.make src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend.internal". Scanning dependencies of target SEQUENCES_EXTRA make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build.make src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 26%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/profile.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/PROFILES.dir/profile.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/profile.c [ 28%] Building C object src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/pam.c make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 28%] Built target quantile make -f src/C/CMakeFiles/pfdump.dir/build.make src/C/CMakeFiles/pfdump.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/depend.internal". Scanning dependencies of target pfdump make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfdump.dir/build.make src/C/CMakeFiles/pfdump.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 29%] Building C object src/C/CMakeFiles/pfdump.dir/utils/io.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_TEST -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfdump.dir/utils/io.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/io.c make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 31%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/Normalization.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/PROFILES.dir/Normalization.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/Normalization.c [ 31%] Built target SEQUENCES_EXTRA make -f src/C/CMakeFiles/pfsplit.dir/build.make src/C/CMakeFiles/pfsplit.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/depend.internal". Scanning dependencies of target pfsplit make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfsplit.dir/build.make src/C/CMakeFiles/pfsplit.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 32%] Building C object src/C/CMakeFiles/pfsplit.dir/prg/split.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfsplit.dir/prg/split.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/split.c [ 34%] Linking C executable pfsplit make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsplit.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfsplit.dir/prg/split.c.o -o pfsplit [ 34%] Built target PROFILES make -f src/Fortran/CMakeFiles/gtop.dir/build.make src/Fortran/CMakeFiles/gtop.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/depend.internal". Scanning dependencies of target gtop make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/gtop.dir/build.make src/Fortran/CMakeFiles/gtop.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 35%] Building Fortran object src/Fortran/CMakeFiles/gtop.dir/gtop.f.o [ 35%] Built target pfsplit cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/gtop.f -o CMakeFiles/gtop.dir/gtop.f.o make -f src/Fortran/CMakeFiles/ptoh.dir/build.make src/Fortran/CMakeFiles/ptoh.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/depend.internal". Scanning dependencies of target ptoh make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/ptoh.dir/build.make src/Fortran/CMakeFiles/ptoh.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 37%] Building Fortran object src/Fortran/CMakeFiles/ptoh.dir/ptoh.f.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/ptoh.f -o CMakeFiles/ptoh.dir/ptoh.f.o [ 38%] Linking C executable pfpam cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfpam.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfpam.dir/utils/pam.c.o CMakeFiles/pfpam.dir/utils/io.c.o CMakeFiles/pfpam.dir/utils/random.c.o -o pfpam make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 38%] Built target pfpam make -f src/Fortran/CMakeFiles/htop.dir/build.make src/Fortran/CMakeFiles/htop.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/depend.internal". Scanning dependencies of target htop make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/htop.dir/build.make src/Fortran/CMakeFiles/htop.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 40%] Building Fortran object src/Fortran/CMakeFiles/htop.dir/htop.f.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/htop.f -o CMakeFiles/htop.dir/htop.f.o rhmmer2.f:265:17: Warning: Array reference at (1) out of bounds (47 > 46) in loop beginning at (2) rhmmer2.f:265:29: Warning: Array reference at (1) out of bounds (47 > 46) in loop beginning at (2) rhmmer2.f:274:17: Warning: Array reference at (1) out of bounds (47 > 27) in loop beginning at (2) rhmmer2.f:274:29: Warning: Array reference at (1) out of bounds (47 > 27) in loop beginning at (2) [ 41%] Linking C executable pfdump cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfdump.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfdump.dir/utils/io.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o -o pfdump /usr/lib/x86_64-linux-gnu/libpcre.so make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 41%] Built target pfdump make -f src/Fortran/CMakeFiles/2ft.dir/build.make src/Fortran/CMakeFiles/2ft.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/depend.internal". Scanning dependencies of target 2ft make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/2ft.dir/build.make src/Fortran/CMakeFiles/2ft.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 43%] Building Fortran object src/Fortran/CMakeFiles/2ft.dir/2ft.f.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/2ft.f -o CMakeFiles/2ft.dir/2ft.f.o [ 44%] Linking Fortran executable 2ft cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/2ft.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/2ft.dir/2ft.f.o -o 2ft make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 46%] Building C object src/Fortran/CMakeFiles/gtop.dir/io.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -o CMakeFiles/gtop.dir/io.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/io.c [ 46%] Built target 2ft make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/depend.internal". Scanning dependencies of target pfmake make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 47%] Building Fortran object src/Fortran/CMakeFiles/pfmake.dir/pfmake.f.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/pfmake.f -o CMakeFiles/pfmake.dir/pfmake.f.o [ 49%] Linking Fortran executable ptoh cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/ptoh.dir/link.txt --verbose=1 [ 50%] Linking Fortran executable gtop cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtop.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/ptoh.dir/ptoh.f.o -o ptoh /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/gtop.dir/gtop.f.o CMakeFiles/gtop.dir/io.c.o -o gtop make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 50%] Built target ptoh make -f src/Fortran/CMakeFiles/pfsearch.dir/build.make src/Fortran/CMakeFiles/pfsearch.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/depend.internal". [ 50%] Built target gtop make -f src/Fortran/CMakeFiles/pfscale.dir/build.make src/Fortran/CMakeFiles/pfscale.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/DependInfo.cmake --color= Scanning dependencies of target pfsearch make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfsearch.dir/build.make src/Fortran/CMakeFiles/pfsearch.dir/build Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/depend.internal". make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' Scanning dependencies of target pfscale make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfscale.dir/build.make src/Fortran/CMakeFiles/pfscale.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 52%] Building Fortran object src/Fortran/CMakeFiles/pfsearch.dir/pfsearch.f.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/pfsearch.f -o CMakeFiles/pfsearch.dir/pfsearch.f.o [ 53%] Building Fortran object src/Fortran/CMakeFiles/pfscale.dir/pfscale.f.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/pfscale.f -o CMakeFiles/pfscale.dir/pfscale.f.o [ 55%] Linking Fortran executable htop cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/htop.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/htop.dir/htop.f.o -o htop make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 55%] Built target htop make -f src/Fortran/CMakeFiles/ptof.dir/build.make src/Fortran/CMakeFiles/ptof.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". Scanning dependencies of target ptof make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/ptof.dir/build.make src/Fortran/CMakeFiles/ptof.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 56%] Building Fortran object src/Fortran/CMakeFiles/ptof.dir/ptof.f.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/ptof.f -o CMakeFiles/ptof.dir/ptof.f.o [ 58%] Linking Fortran executable pfscale cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscale.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfscale.dir/pfscale.f.o -o pfscale make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 58%] Built target pfscale make -f src/Fortran/CMakeFiles/pfw.dir/build.make src/Fortran/CMakeFiles/pfw.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/depend.internal". Scanning dependencies of target pfw make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfw.dir/build.make src/Fortran/CMakeFiles/pfw.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 59%] Building C object src/Fortran/CMakeFiles/pfw.dir/io.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -o CMakeFiles/pfw.dir/io.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/io.c [ 61%] Building Fortran object src/Fortran/CMakeFiles/pfw.dir/pfw.f.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/pfw.f -o CMakeFiles/pfw.dir/pfw.f.o /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/pfw.f:530:72: 530 | IF(J.GT.97.OR.J.LT.1) PAUSE | 1 Warning: Deleted feature: PAUSE statement at (1) [ 62%] Linking Fortran executable pfmake cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfmake.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfmake.dir/pfmake.f.o -o pfmake make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 62%] Built target pfmake make -f src/Fortran/CMakeFiles/6ft.dir/build.make src/Fortran/CMakeFiles/6ft.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/depend.internal". Scanning dependencies of target 6ft make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/6ft.dir/build.make src/Fortran/CMakeFiles/6ft.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 64%] Building Fortran object src/Fortran/CMakeFiles/6ft.dir/6ft.f.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/6ft.f -o CMakeFiles/6ft.dir/6ft.f.o [ 65%] Linking Fortran executable pfw cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfw.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfw.dir/io.c.o CMakeFiles/pfw.dir/pfw.f.o -o pfw [ 67%] Linking Fortran executable 6ft cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/6ft.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/6ft.dir/6ft.f.o -o 6ft make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 67%] Built target pfw make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/depend.internal". Scanning dependencies of target psa2msa make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/build make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 68%] Building C object src/Fortran/CMakeFiles/psa2msa.dir/io.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -o CMakeFiles/psa2msa.dir/io.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/io.c [ 68%] Built target 6ft make -f src/Fortran/CMakeFiles/pfscan.dir/build.make src/Fortran/CMakeFiles/pfscan.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/depend.internal". Scanning dependencies of target pfscan make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfscan.dir/build.make src/Fortran/CMakeFiles/pfscan.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 70%] Building Fortran object src/Fortran/CMakeFiles/pfscan.dir/pfscan.f.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/pfscan.f -o CMakeFiles/pfscan.dir/pfscan.f.o [ 71%] Building Fortran object src/Fortran/CMakeFiles/psa2msa.dir/psa2msa.f.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/psa2msa.f -o CMakeFiles/psa2msa.dir/psa2msa.f.o [ 73%] Linking Fortran executable psa2msa cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/psa2msa.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/psa2msa.dir/io.c.o CMakeFiles/psa2msa.dir/psa2msa.f.o -o psa2msa make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 73%] Built target psa2msa make -f src/C/CMakeFiles/pfsearchV3.dir/build.make src/C/CMakeFiles/pfsearchV3.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsearchV3.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsearchV3.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsearchV3.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsearchV3.dir/depend.internal". Scanning dependencies of target pfsearchV3 make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfsearchV3.dir/build.make src/C/CMakeFiles/pfsearchV3.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 74%] Building C object src/C/CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -I/usr/include -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfsearch.c /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfsearch.c: In function ‘Usage’: /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfsearch.c:191:39: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 191 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", OutputPrintWidth); | ^~~~~~~~ /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfsearch.c:191:55: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 191 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", OutputPrintWidth); | ^~~~~~~~ /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfsearch.c: In function ‘main’: /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfsearch.c:494:9: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 494 | fputs(HEADER | ^~~~~~ /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfsearch.c:33:15: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 33 | "| Built on " __DATE__ " at " __TIME__ ". |\n" | ^~~~~~~~ /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfsearch.c:494:9: note: in expansion of macro ‘HEADER’ 494 | fputs(HEADER | ^~~~~~ [ 76%] Linking Fortran executable pfsearch cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsearch.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfsearch.dir/pfsearch.f.o -o pfsearch make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 76%] Built target pfsearch make -f src/C/CMakeFiles/pfindex.dir/build.make src/C/CMakeFiles/pfindex.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfindex.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfindex.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfindex.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfindex.dir/depend.internal". Scanning dependencies of target pfindex make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfindex.dir/build.make src/C/CMakeFiles/pfindex.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 77%] Building C object src/C/CMakeFiles/pfindex.dir/prg/pfindex.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfindex.dir/prg/pfindex.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfindex.c /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfindex.c: In function ‘Usage’: /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfindex.c:84:39: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 84 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", stream); | ^~~~~~~~ /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfindex.c:84:55: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 84 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", stream); | ^~~~~~~~ [ 79%] Linking Fortran executable ptof cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/ptof.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/ptof.dir/ptof.f.o -o ptof [ 80%] Linking C executable pfindex cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfindex.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfindex.dir/prg/pfindex.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o -o pfindex make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 80%] Built target ptof make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/depend make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/depend.internal". Scanning dependencies of target pfscanV3 make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 80%] Built target pfindex make -f src/C/utils/CMakeFiles/CALIBRATION.dir/build.make src/C/utils/CMakeFiles/CALIBRATION.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/DependInfo.cmake --color= [ 82%] Building C object src/C/CMakeFiles/pfscanV3.dir/prg/pfscan.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfscanV3.dir/prg/pfscan.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfscan.c Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/depend.internal". Scanning dependencies of target CALIBRATION make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/utils/CMakeFiles/CALIBRATION.dir/build.make src/C/utils/CMakeFiles/CALIBRATION.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 83%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/random.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/random.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/random.c /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfscan.c: In function ‘Usage’: /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfscan.c:154:41: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 154 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", | ^~~~~~~~ /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfscan.c:154:57: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 154 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", | ^~~~~~~~ /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfscan.c: In function ‘main’: /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfscan.c:368:10: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 368 | fputs(HEADER | ^~~~~~ /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfscan.c:26:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 26 | "| Built on " __DATE__ " at " __TIME__ ". |\n" | ^~~~~~~~ /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfscan.c:368:10: note: in expansion of macro ‘HEADER’ 368 | fputs(HEADER | ^~~~~~ [ 85%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/histogram.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/histogram.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/histogram.c [ 86%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/quantileregression.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/quantileregression.c [ 88%] Linking C executable pfscanV3 cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscanV3.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfscanV3.dir/prg/pfscan.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfscanV3 /usr/lib/x86_64-linux-gnu/libpcre.so -lm -lpthread [ 89%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/generatesequences.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/generatesequences.c make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 89%] Built target pfscanV3 make -f src/C/CMakeFiles/pfemit.dir/build.make src/C/CMakeFiles/pfemit.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfemit.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfemit.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfemit.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfemit.dir/depend.internal". Scanning dependencies of target pfemit make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfemit.dir/build.make src/C/CMakeFiles/pfemit.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 91%] Building C object src/C/CMakeFiles/pfemit.dir/utils/generatesequences.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFEMIT -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfemit.dir/utils/generatesequences.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/generatesequences.c make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 91%] Built target CALIBRATION make -f src/C/CMakeFiles/pfcalibrateV3.dir/build.make src/C/CMakeFiles/pfcalibrateV3.dir/depend make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-XIxtvT/pftools-3.2.6 /build/pftools-XIxtvT/pftools-3.2.6/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/DependInfo.cmake --color= Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/DependInfo.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/depend.internal". Dependee "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/depend.internal". Scanning dependencies of target pfcalibrateV3 make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfcalibrateV3.dir/build.make src/C/CMakeFiles/pfcalibrateV3.dir/build make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 92%] Building C object src/C/CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfcalibrate.c [ 94%] Building C object src/C/CMakeFiles/pfemit.dir/utils/random.c.o cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFEMIT -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-XIxtvT/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfemit.dir/utils/random.c.o -c /build/pftools-XIxtvT/pftools-3.2.6/src/C/utils/random.c /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfcalibrate.c: In function ‘Usage’: /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfcalibrate.c:287:42: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 287 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", | ^~~~~~~~ /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfcalibrate.c:287:58: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 287 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", | ^~~~~~~~ /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfcalibrate.c: In function ‘main’: /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfcalibrate.c:963:9: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 963 | fputs(HEADER | ^~~~~~ /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfcalibrate.c:49:15: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 49 | "| Built on " __DATE__ " at " __TIME__ ". |\n" | ^~~~~~~~ /build/pftools-XIxtvT/pftools-3.2.6/src/C/prg/pfcalibrate.c:963:9: note: in expansion of macro ‘HEADER’ 963 | fputs(HEADER | ^~~~~~ [ 95%] Linking C executable pfemit cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfemit.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfemit.dir/utils/generatesequences.c.o CMakeFiles/pfemit.dir/utils/random.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o -o pfemit -lm make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 95%] Built target pfemit [ 97%] Linking C executable pfsearchV3 cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsearchV3.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfsearchV3 /usr/lib/x86_64-linux-gnu/libpcre.so -lm -lpthread make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 97%] Built target pfsearchV3 [ 98%] Linking C executable pfcalibrateV3 cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfcalibrateV3.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o utils/CMakeFiles/CALIBRATION.dir/random.c.o utils/CMakeFiles/CALIBRATION.dir/histogram.c.o utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o ../Fortran/CMakeFiles/quantile.dir/rq0.f.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfcalibrateV3 -lm -lpthread -lgfortran -lm -lquadmath -lm /usr/bin/ld: CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o: in function `main': ./obj-x86_64-linux-gnu/src/C/./src/C/prg/pfcalibrate.c:1383: warning: the use of `tempnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [ 98%] Built target pfcalibrateV3 [100%] Linking Fortran executable pfscan cd /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscan.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfscan.dir/pfscan.f.o -o pfscan make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' [100%] Built target pfscan make[2]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6' dh_auto_test --no-parallel cd obj-x86_64-linux-gnu && make -j1 test ARGS\+=-j1 make[2]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j1 Test project /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu Start 1: execute_test_V2.sh 1/5 Test #1: execute_test_V2.sh ................. Passed 0.80 sec Start 2: execute_test_V3.sh 2/5 Test #2: execute_test_V3.sh ................. Passed 79.57 sec Start 3: check_output_of_test_V3.sh 3/5 Test #3: check_output_of_test_V3.sh ......... Passed 80.27 sec Start 4: execute_test_scan_search.pl 4/5 Test #4: execute_test_scan_search.pl ........ Passed 20.26 sec Start 5: execute_test_pfsearchV3_iupac.pl 5/5 Test #5: execute_test_pfsearchV3_iupac.pl ... Passed 103.45 sec 100% tests passed, 0 tests failed out of 5 Total Test time (real) = 284.37 sec make[2]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' export PATH=/build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin ; \ echo ${PATH} ; \ cd data ; \ . ./test.sh | \ sed -e '/^MA/s/\(N_SCORE=[68].5\)0*/\1/' \ -e '/^DT */d' > test.build ; \ grep -v '^DT *' test.out > test.compare ; \ diff -u test.compare test.build || true /build/pftools-XIxtvT/pftools-3.2.6/src/Fortran/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin /bin/sh: 4: .: cannot open ./test.sh: No such file grep: test.out: No such file or directory make[1]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6' dh_auto_install cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/pftools-XIxtvT/pftools-3.2.6/debian/pftools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/pftools-XIxtvT/pftools-3.2.6 -B/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 -- +--------------------------------------------------------------------+ -- | PfTools v3.2.6 | -- +--------------------------------------------------------------------+ -- | (C) Copyright SIB Swiss Institute of Bioinformatics | -- | Thierry Schuepbach (projects@vital-it.ch) | -- | | -- | PfTools is available from | -- | https://github.com/sib-swiss/pftools3 | -- | under the GPL v2. See LICENSE. | -- | | -- +--------------------------------------------------------------------+ -- Compilation on architecture x86_64. -- testing flag -msse4.1... -- Add -std=c99 to C compiler options -- Add SSE2 to C compiler options -- Perl found - full test suite usable -- Building test suite for pfsearch in /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu/Tests -- Check Perl script syntax compare_2_profiles.pl - syntax OK fasta_to_fastq.pl - syntax OK make_iupac_cmp.pl - syntax OK ps_scan.pl - syntax OK scramble_fasta.pl - syntax OK sort_fasta.pl - syntax OK split_profile_file.pl - syntax OK -- -- PfTools Software Suite configuration summary: -- -- System name ......................: Linux -- Build type .......................: None -- -- Integer format ...................: 16 bits -- -- Install prefix .................. : /usr -- C compiler ...................... : /usr/bin/cc -- Fortran compiler ................ : /usr/bin/f95 -- C compiler flags ................ : -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -- C compiler SSE2 flag. ........... : -msse2 -- C compiler SSE 4.1 flag.......... : -msse4.1 -- Fortran compiler flags .......... : -g -O2 -fdebug-prefix-map=/build/pftools-XIxtvT/pftools-3.2.6=. -fstack-protector-strong -- -- Use file memory mapping ..........: ON -- Use thread affinity setting ......: ON -- -- Build shared libs ............... : OFF -- Build static libs ............... : OFF -- Build static executables......... : OFF -- -- Link with pcre .................. : ON -- -- Configuring done -- Generating done -- Build files have been written to: /build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/./LICENSE -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/./README.md -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/./README.pftools.v2.3.md -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/./ChangeLog -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/pfsearchV3 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/pfscanV3 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/pfcalibrateV3 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/pfemit -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/pfpam -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/pfdump -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/pfindex -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/gtop -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/htop -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/ptoh -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/ptof -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/pfw -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/2ft -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/6ft -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/psa2msa -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/pfscale -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/pfsearch -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/pfscan -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/pfmake -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/compare_2_profiles.pl -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/fasta_to_fastq.pl -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/make_iupac_cmp.pl -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/ps_scan.pl -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/scramble_fasta.pl -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/sort_fasta.pl -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/bin/split_profile_file.pl -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/calibration/window20.seq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/calibration/reversed.seq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/blosum100.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/blosum30.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/blosum45.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/blosum50.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/blosum62.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/blosum65.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/blosum80.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/dna_50_40.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/gonnet.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/iupac_50_40.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam120.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam160.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam200.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam220.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam250.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam30.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam40.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam400.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/cmp/pam80.cmp -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/reverse/forward.msa -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/reverse/forward.prf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/reverse/forward.seq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/reverse/forward_dna.seq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/reverse/forward_dna_shift5.seq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/reverse/reverse.msa -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/reverse/reverse.prf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/reverse/reverse.seq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/familyProfile/DoubleProfile.prf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/familyProfile/sequence.seq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/data/familyProfile/sh2.prf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/test_V2.sh.cmake -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/sample.fastq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/prosite13.prf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/RF00177.msa -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/VAV_HUMAN.seq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/CVPBR322.embl -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/sh2.prf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/sh3.seq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/all.prf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/GTPA_HUMAN.dat -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/test_V3.sh.cmake -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/MYSA_HUMAN -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/PS00741_PS50010.dat -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/test_V3.out -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/test_pfsearchV3_iupac.pl.cmake -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/pfam_sh3.hmm -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/hiv.fastq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/rand_dna.prf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/coils.prf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/ecp.prf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/sh3.msf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/all.seq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/htop_issue.hmm -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/16S.prf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/R76849.seq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/Toolbox.pm -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/hiv.prf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/test_V3_output.sh.cmake -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/sh3.gpr -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/SRR9619541.sample.fastq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/sh3.prf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/standard.random -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/VAV_RAT.seq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/score.lis -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/test_scan_search.pl.cmake -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/examples/rand_dna.seq -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/doc/profile.pdf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/doc/profile.txt -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/doc/posterPfsearchV3SIBdays2013_v0.3.pdf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/doc/btt129.pdf -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man1/2ft.1 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man1/6ft.1 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man1/gtop.1 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man1/htop.1 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man1/pfmake.1 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man1/pfscale.1 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man1/pfscan.1 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man1/pfsearch.1 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man1/pfsearchV2.1 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man1/pfw.1 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man1/psa2msa.1 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man1/ptof.1 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man1/ptoh.1 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man5/psa.5 -- Installing: /build/pftools-XIxtvT/pftools-3.2.6/debian/pftools/usr/share/man/man5/xpsa.5 make[2]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6/obj-x86_64-linux-gnu' # Avoid name spacing conflict with htop and consequently also rename gtop mv debian/pftools/usr/bin/gtop debian/pftools/usr/bin/pfgtop mv debian/pftools/usr/bin/htop debian/pftools/usr/bin/pfhtop make[1]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a debian/rules override_dh_installman make[1]: Entering directory '/build/pftools-XIxtvT/pftools-3.2.6' dh_installman mv debian/pftools/usr/share/man/man1/gtop.1 debian/pftools/usr/share/man/man1/pfgtop.1 mv debian/pftools/usr/share/man/man1/htop.1 debian/pftools/usr/share/man/man1/pfhtop.1 mv debian/pftools/usr/share/doc/*.pdf debian/pftools/usr/share/doc/pftools/ rm -f debian/pftools/usr/share/doc/*.txt debian/pftools/usr/ChangeLog debian/pftools/usr/README* debian/pftools/usr/LICENSE make[1]: Leaving directory '/build/pftools-XIxtvT/pftools-3.2.6' dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dwz: debian/pftools/usr/bin/pfhtop: DWARF compression not beneficial - old size 42209 new size 42984 dwz: debian/pftools/usr/bin/pfmake: DWARF compression not beneficial - old size 54023 new size 55447 dwz: debian/pftools/usr/bin/pfscale: DWARF compression not beneficial - old size 43458 new size 44187 dwz: debian/pftools/usr/bin/pfscan: DWARF compression not beneficial - old size 66684 new size 70010 dwz: debian/pftools/usr/bin/pfsearch: DWARF compression not beneficial - old size 68858 new size 72375 dwz: debian/pftools/usr/bin/ptof: DWARF compression not beneficial - old size 41913 new size 42449 dwz: debian/pftools/usr/bin/ptoh: DWARF compression not beneficial - old size 35466 new size 36114 dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package pftools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package pftools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'pftools' in '../pftools_3.2.6-1_amd64.deb'. dpkg-deb: building package 'pftools-dbgsym' in '../pftools-dbgsym_3.2.6-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../pftools_3.2.6-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/pftools-XIxtvT /tmp/pftools-3.2.6-1es56kg25 I: cleaning package lists and apt cache... W: deleting files in /tmp: test_pfsearchV3_iupac W: deleting files in /tmp: test_V3 W: deleting files in /tmp: test_scan_search I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.FE9Dseahcn... I: success in 1102.4532 seconds md5: pftools-dbgsym_3.2.6-1_amd64.deb: OK md5: pftools_3.2.6-1_amd64.deb: OK sha1: pftools-dbgsym_3.2.6-1_amd64.deb: OK sha1: pftools_3.2.6-1_amd64.deb: OK sha256: pftools-dbgsym_3.2.6-1_amd64.deb: OK sha256: pftools_3.2.6-1_amd64.deb: OK Checksums: OK