Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/perm/perm_0.4.0-7_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/perm-0.4.0-7qc5qo_9l/perm_0.4.0-7_amd64.buildinfo Get source package info: perm=0.4.0-7 Source URL: http://snapshot.notset.fr/mr/package/perm/0.4.0-7/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11.1 base-passwd=3.5.51 bash=5.1-3+b1 binutils=2.35.2-2 binutils-common=2.35.2-2 binutils-x86-64-linux-gnu=2.35.2-2 bsdextrautils=2.36.1-8 bsdutils=1:2.36.1-8 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.3.4 debianutils=4.11.2 dh-autoreconf=20 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.2-2 libblkid1=2.36.1-8 libbsd-dev=0.11.3-1 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-13 libc-dev-bin=2.31-13 libc6=2.31-13 libc6-dev=2.31-13 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcom-err2=1.46.2-2 libcrypt-dev=1:4.4.18-5 libcrypt1=1:4.4.18-5 libctf-nobfd0=2.35.2-2 libctf0=2.35.2-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.3.4 libdpkg-perl=1.20.9 libelf1=0.183-3 libfile-stripnondeterminism-perl=1.12.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-6 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-6 libicu67=67.1-7 libisl23=0.23-1 libitm1=10.2.1-6 libk5crypto3=1.18.3-6 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-6 libkrb5support0=1.18.3-6 liblsan0=10.2.1-6 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd-dev=1.0.3-3 libmd0=1.0.3-3 libmount1=2.36.1-8 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-9 libpam-modules-bin=1.4.0-9 libpam-runtime=1.4.0-9 libpam0g=1.4.0-9 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-4 libpipeline1=1.5.3-1 libquadmath0=10.2.1-6 libseccomp2=2.5.1-1 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.36.1-8 libssl1.1=1.1.1k-1 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.3-6 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.3-6 libunistring2=0.9.10-4 libuuid1=2.36.1-8 libxml2=2.9.10+dfsg-6.7 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.10.46-3 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 patch=2.7.6-7 perl=5.32.1-4 perl-base=5.32.1-4 perl-modules-5.32=5.32.1-4 po-debconf=1.0.21+nmu1 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-7 tar=1.34+dfsg-1 util-linux=2.36.1-8 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210803T082915Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d perm=0.4.0-7 && mkdir -p /build/perm-gzDHIW && dpkg-source --no-check -x /*.dsc /build/perm-gzDHIW/perm-0.4.0 && chown -R builduser:builduser /build/perm-gzDHIW" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/perm-gzDHIW/perm-0.4.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1627976868" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/perm-gzDHIW /tmp/perm-0.4.0-7qc5qo_9l bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210803T082915Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.K6fa6jwbX7 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.K6fa6jwbX7 Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-8). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210803T082915Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210803T082915Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (685 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4668 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-13) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210803T082915Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.K6fa6jwbX7 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210803T082915Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1109 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.K6fa6jwbX7 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d perm=0.4.0-7 && mkdir -p /build/perm-gzDHIW && dpkg-source --no-check -x /*.dsc /build/perm-gzDHIW/perm-0.4.0 && chown -R builduser:builduser /build/perm-gzDHIW"' exec /tmp/mmdebstrap.K6fa6jwbX7 Reading package lists... NOTICE: 'perm' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/perm.git Please use: git clone https://salsa.debian.org/med-team/perm.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 127 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main perm 0.4.0-7 (dsc) [1931 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main perm 0.4.0-7 (tar) [114 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main perm 0.4.0-7 (diff) [11.5 kB] Fetched 127 kB in 0s (739 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'perm_0.4.0-7.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting perm in /build/perm-gzDHIW/perm-0.4.0 dpkg-source: info: unpacking perm_0.4.0.orig.tar.gz dpkg-source: info: unpacking perm_0.4.0-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_dynamic_executable.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc7.patch dpkg-source: info: applying fix-buffer-overflow.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/perm-gzDHIW/perm-0.4.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1627976868" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.K6fa6jwbX7 dpkg-buildpackage: info: source package perm dpkg-buildpackage: info: source version 0.4.0-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/build/perm-gzDHIW/perm-0.4.0' rm -f *.o *.exe cut out perm perm.tar.gz make[1]: Leaving directory '/build/perm-gzDHIW/perm-0.4.0' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/perm-gzDHIW/perm-0.4.0' make clean make[2]: Entering directory '/build/perm-gzDHIW/perm-0.4.0' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -f *.o *.exe cut out perm perm.tar.gz make[2]: Leaving directory '/build/perm-gzDHIW/perm-0.4.0' g++ -O2 -g -O2 -ffile-prefix-map=/build/perm-gzDHIW/perm-0.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -fopenmp -o perm -g -O2 -ffile-prefix-map=/build/perm-gzDHIW/perm-0.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -fopenmp AlignmentsQ.cpp Filename.cpp GenomeNTdata.cpp ReadInBits.cpp PerM.cpp chromosomeNTdata.cpp bitsOperationUtil.cpp FileOutputBuffer.cpp HashIndexT.cpp ReadInBitsSet.cpp SeedPattern.cpp boolFlagArray.cpp GenomeInBits.cpp Index_Table.cpp ReadsMapping.cpp PairedReadsMapping.cpp ShortReadUtil.cpp chdir.cpp Genome_Index.cpp MismatchScores.cpp stdafx.cpp Flags.cpp ParseReadsOpts.cpp ColorSpaceRead.cpp Genome_Index_Table.cpp ParameterList.cpp ReadsMappingStats.cpp FileInputBuffer.cpp Genome_Index_TableQ.cpp ReadsQualScores.cpp ChrIndex2GeneName.cpp ReadsFileParser.cpp PairedReadsSet.cpp MappingResult.cpp refInBinFile.cpp LongReadsSet.cpp -lm -lstdc++ -lbsd -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 ReadsMapping.cpp: In constructor ‘CReadsMapping::CReadsMapping(MappingOpts)’: ReadsMapping.cpp:102:46: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 102 | sprintf(this->opt.outputDir, "%s/", P.outputDir); | ^ In file included from /usr/include/stdio.h:867, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6545, from /usr/include/c++/10/string:55, from /usr/include/c++/10/bits/locale_classes.h:40, from /usr/include/c++/10/bits/ios_base.h:41, from /usr/include/c++/10/ios:42, from /usr/include/c++/10/ostream:38, from /usr/include/c++/10/iostream:39, from FileOutputBuffer.h:2, from PairedReadsSet.h:4, from LongReadsSet.h:2, from ReadsMapping.h:8, from ReadsMapping.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 4097 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In function ‘std::string getOutputFileNamePrefix(const char*, const CGenome_Index_TableQ&, MappingOpts&)’: ReadsMapping.cpp:594:33: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 2048 [-Wformat-overflow=] 594 | sprintf(outputPrefixStr, "%s%s_%c_%u_%d",\ | ^~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6545, from /usr/include/c++/10/string:55, from /usr/include/c++/10/bits/locale_classes.h:40, from /usr/include/c++/10/bits/ios_base.h:41, from /usr/include/c++/10/ios:42, from /usr/include/c++/10/ostream:38, from /usr/include/c++/10/iostream:39, from FileOutputBuffer.h:2, from PairedReadsSet.h:4, from LongReadsSet.h:2, from ReadsMapping.h:8, from ReadsMapping.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 4102) into a destination of size 2048 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In member function ‘std::string CReadsMapping::getMappingFileN(const char*, const CGenome_Index_TableQ&)’: ReadsMapping.cpp:730:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 2048 [-Wformat-overflow=] 730 | sprintf(outputPath, "%s%s", this->opt.outputDir, this->opt.outputFileN); | ^~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6545, from /usr/include/c++/10/string:55, from /usr/include/c++/10/bits/locale_classes.h:40, from /usr/include/c++/10/bits/ios_base.h:41, from /usr/include/c++/10/ios:42, from /usr/include/c++/10/ostream:38, from /usr/include/c++/10/iostream:39, from FileOutputBuffer.h:2, from PairedReadsSet.h:4, from LongReadsSet.h:2, from ReadsMapping.h:8, from ReadsMapping.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 1 and 8191 bytes into a destination of size 2048 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ReadsMapping.cpp:594:31: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 2048 [-Wformat-overflow=] 594 | sprintf(outputPrefixStr, "%s%s_%c_%u_%d",\ | ^~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6545, from /usr/include/c++/10/string:55, from /usr/include/c++/10/bits/locale_classes.h:40, from /usr/include/c++/10/bits/ios_base.h:41, from /usr/include/c++/10/ios:42, from /usr/include/c++/10/ostream:38, from /usr/include/c++/10/iostream:39, from FileOutputBuffer.h:2, from PairedReadsSet.h:4, from LongReadsSet.h:2, from ReadsMapping.h:8, from ReadsMapping.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 8216 bytes into a destination of size 2048 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In function ‘void getSingleMappingSeqAndQ4SOLiD(const CGenome_Index_TableQ&, CAlignmentsQ&, CMappingResult&, bool)’: ReadsMapping.cpp:907:27: warning: ‘ CS:Z:’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 907 | sprintf(m.TAG, "%s\tCS:Z:%s\tCQ:Z:%s", m.TAG, m.caRead, m.QScores); | ^~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6545, from /usr/include/c++/10/string:55, from /usr/include/c++/10/bits/locale_classes.h:40, from /usr/include/c++/10/bits/ios_base.h:41, from /usr/include/c++/10/ios:42, from /usr/include/c++/10/ostream:38, from /usr/include/c++/10/iostream:39, from FileOutputBuffer.h:2, from PairedReadsSet.h:4, from LongReadsSet.h:2, from ReadsMapping.h:8, from ReadsMapping.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4876 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParameterList.cpp: In member function ‘void MappingOpts::setDefaults()’: ParameterList.cpp:31:9: warning: unused variable ‘mismatchScoreThreshold’ [-Wunused-variable] 31 | int mismatchScoreThreshold = -1; // No filtering by sum of mismatch score | ^~~~~~~~~~~~~~~~~~~~~~ Genome_Index_TableQ.cpp: In member function ‘unsigned int CGenome_Index_TableQ::extendAlignment(CAlignmentsQ&, CReadInBits) const’: Genome_Index_TableQ.cpp:364:10: warning: variable ‘extendForward’ set but not used [-Wunused-but-set-variable] 364 | bool extendForward = true; | ^~~~~~~~~~~~~ #g++ -O2 -g -O2 -ffile-prefix-map=/build/perm-gzDHIW/perm-0.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -fopenmp -o perm *.o -lm -lstdc++ -lbsd make[1]: Leaving directory '/build/perm-gzDHIW/perm-0.4.0' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/perm-gzDHIW/perm-0.4.0' # make[1]: Leaving directory '/build/perm-gzDHIW/perm-0.4.0' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'perm-dbgsym' in '../perm-dbgsym_0.4.0-7_amd64.deb'. dpkg-deb: building package 'perm' in '../perm_0.4.0-7_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../perm_0.4.0-7_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/perm-gzDHIW /tmp/perm-0.4.0-7qc5qo_9l I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.K6fa6jwbX7... I: success in 382.6973 seconds md5: perm-dbgsym_0.4.0-7_amd64.deb: OK md5: perm_0.4.0-7_amd64.deb: OK sha1: perm-dbgsym_0.4.0-7_amd64.deb: OK sha1: perm_0.4.0-7_amd64.deb: OK sha256: perm-dbgsym_0.4.0-7_amd64.deb: OK sha256: perm_0.4.0-7_amd64.deb: OK Checksums: OK