Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/parsnp/parsnp_1.5.4+dfsg-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/parsnp-1.5.4+dfsg-1t7xto_3a/parsnp_1.5.4+dfsg-1_amd64.buildinfo Get source package info: parsnp=1.5.4+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/parsnp/1.5.4+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.3-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc3-1 binutils=2.35.1-3 binutils-common=2.35.1-3 binutils-x86-64-linux-gnu=2.35.1-3 bsdextrautils=2.36.1-2 bsdutils=1:2.36.1-2 build-essential=12.8 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-19 cython3=0.29.21-3 dash=0.5.11+git20200708+dd9ef66-2 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 file=1:5.39-3 findutils=4.7.0+git20201010-2 g++=4:10.2.0-1 g++-10=10.2.0-19 gcc=4:10.2.0-1 gcc-10=10.2.0-19 gcc-10-base=10.2.0-19 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.59 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libasan6=10.2.0-19 libatomic1=10.2.0-19 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-3 libblkid1=2.36.1-2 libbz2-1.0=1.0.8-4 libc-bin=2.31-4 libc-dev-bin=2.31-4 libc6=2.31-4 libc6-dev=2.31-4 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.0-19 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-3 libctf0=2.35.1-3 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.2.1 libdpkg-perl=1.20.5 libelf1=0.182-1 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.0-19 libgcc-s1=10.2.0-19 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libglib2.0-0=2.66.3-1 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.0-19 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-4 libisl23=0.23-1 libitm1=10.2.0-19 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblsan0=10.2.0-19 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libmuscle-dev=3.7+4565-7 libmuscle1=3.7+4565-7 libncursesw6=6.2+20201114-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnss-nis=3.1-4 libnss-nisplus=1.3-4 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libpython3-all-dev=3.9.0-3 libpython3-dev=3.9.0-3 libpython3-stdlib=3.9.0-3 libpython3.8=3.8.6-1 libpython3.8-dev=3.8.6-1 libpython3.8-minimal=3.8.6-1 libpython3.8-stdlib=3.8.6-1 libpython3.9=3.9.1~rc1-2 libpython3.9-dev=3.9.1~rc1-2 libpython3.9-minimal=3.9.1~rc1-2 libpython3.9-stdlib=3.9.1~rc1-2 libquadmath0=10.2.0-19 libreadline8=8.1~rc3-1 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsigsegv2=2.12-2 libsmartcols1=2.36.1-2 libsqlite3-0=3.33.0-1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-19 libstdc++6=10.2.0-19 libsub-override-perl=0.09-2 libsystemd0=246.6-5 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.0-19 libubsan1=10.2.0-19 libuchardet0=0.0.7-1 libudev1=246.6-5 libunistring2=0.9.10-4 libuuid1=2.36.1-2 libxml2=2.9.10+dfsg-6.3 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 po-debconf=1.0.21 python3=3.9.0-3 python3-all=3.9.0-3 python3-all-dev=3.9.0-3 python3-dev=3.9.0-3 python3-distutils=3.8.6-1 python3-lib2to3=3.8.6-1 python3-minimal=3.9.0-3 python3-pkg-resources=50.3.0-1 python3-setuptools=50.3.0-1 python3.8=3.8.6-1 python3.8-dev=3.8.6-1 python3.8-minimal=3.8.6-1 python3.9=3.9.1~rc1-2 python3.9-dev=3.9.1~rc1-2 python3.9-minimal=3.9.1~rc1-2 readline-common=8.1~rc3-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2020d-1 util-linux=2.36.1-2 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201201T091156Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d parsnp=1.5.4+dfsg-1 && mkdir -p /build/parsnp-i2HhOu && dpkg-source --no-check -x /*.dsc /build/parsnp-i2HhOu/parsnp-1.5.4+dfsg && chown -R builduser:builduser /build/parsnp-i2HhOu" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/parsnp-i2HhOu/parsnp-1.5.4+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1606826650" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/parsnp-i2HhOu /tmp/parsnp-1.5.4+dfsg-1t7xto_3a bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201201T091156Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.fWR8HBbXD1 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.fWR8HBbXD1 Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201201T091156Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201201T091156Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (657 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4697 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201201T091156Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.fWR8HBbXD1 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20201201T091156Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 19s (1159 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.fWR8HBbXD1 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d parsnp=1.5.4+dfsg-1 && mkdir -p /build/parsnp-i2HhOu && dpkg-source --no-check -x /*.dsc /build/parsnp-i2HhOu/parsnp-1.5.4+dfsg && chown -R builduser:builduser /build/parsnp-i2HhOu"' exec /tmp/mmdebstrap.fWR8HBbXD1 Reading package lists... NOTICE: 'parsnp' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/parsnp.git Please use: git clone https://salsa.debian.org/med-team/parsnp.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 136 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main parsnp 1.5.4+dfsg-1 (dsc) [2075 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main parsnp 1.5.4+dfsg-1 (tar) [126 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main parsnp 1.5.4+dfsg-1 (diff) [7596 B] Fetched 136 kB in 0s (809 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'parsnp_1.5.4+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting parsnp in /build/parsnp-i2HhOu/parsnp-1.5.4+dfsg dpkg-source: info: unpacking parsnp_1.5.4+dfsg.orig.tar.xz dpkg-source: info: unpacking parsnp_1.5.4+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying avoid_rpath.patch dpkg-source: info: applying add_missing_interpreter_line.patch dpkg-source: info: applying proper_calls_to_tools.patch dpkg-source: info: applying drop_m64.patch dpkg-source: info: applying fix_build_with_as-needed.patch dpkg-source: info: applying non-versioned-libs.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/parsnp-i2HhOu/parsnp-1.5.4+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1606826650" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.fWR8HBbXD1 dpkg-buildpackage: info: source package parsnp dpkg-buildpackage: info: source version 1.5.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary-arch dh binary-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a configure.ac:2: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:2: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:3: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am:4: warning: source file './ext/iniFile.cpp' is in a subdirectory, src/Makefile.am:4: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. src/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' dh_auto_configure -- --with-libmuscle=/usr/include/libMUSCLE-3.7 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-libmuscle=/usr/include/libMUSCLE-3.7 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking libMUSCLE/muscle.h usability... yes checking libMUSCLE/muscle.h presence... yes checking for libMUSCLE/muscle.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: executing depfiles commands make[1]: Leaving directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' dh_auto_build -a make -j4 make[1]: Entering directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' Making all in src make[2]: Entering directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg/src' g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.5.3\" -DPACKAGE_STRING=\"parsnp\ 1.5.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.5.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp_core-MuscleInterface.o `test -f 'MuscleInterface.cpp' || echo './'`MuscleInterface.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.5.3\" -DPACKAGE_STRING=\"parsnp\ 1.5.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.5.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp_core-parsnp.o `test -f 'parsnp.cpp' || echo './'`parsnp.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.5.3\" -DPACKAGE_STRING=\"parsnp\ 1.5.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.5.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp_core-LCB.o `test -f 'LCB.cpp' || echo './'`LCB.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.5.3\" -DPACKAGE_STRING=\"parsnp\ 1.5.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.5.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp_core-LCR.o `test -f 'LCR.cpp' || echo './'`LCR.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.5.3\" -DPACKAGE_STRING=\"parsnp\ 1.5.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.5.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp_core-TMum.o `test -f 'TMum.cpp' || echo './'`TMum.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.5.3\" -DPACKAGE_STRING=\"parsnp\ 1.5.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.5.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp_core-Converter.o `test -f 'Converter.cpp' || echo './'`Converter.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.5.3\" -DPACKAGE_STRING=\"parsnp\ 1.5.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.5.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp_core-iniFile.o `test -f './ext/iniFile.cpp' || echo './'`./ext/iniFile.cpp parsnp.cpp: In member function ‘void Aligner::writeOutput(std::string, std::vector&)’: parsnp.cpp:925:24: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 9 [-Wformat-overflow=] 925 | sprintf(b,"%d",(int)z+1);// C-style string formed without null | ^~ parsnp.cpp:925:23: note: directive argument in the range [-2147483647, 2147483647] 925 | sprintf(b,"%d",(int)z+1);// C-style string formed without null | ^~~~ parsnp.cpp:925:20: note: ‘sprintf’ output between 2 and 12 bytes into a destination of size 9 925 | sprintf(b,"%d",(int)z+1);// C-style string formed without null | ~~~~~~~^~~~~~~~~~~~~~~~~ g++ -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o parsnp_core parsnp_core-MuscleInterface.o parsnp_core-parsnp.o parsnp_core-LCB.o parsnp_core-LCR.o parsnp_core-TMum.o parsnp_core-Converter.o parsnp_core-iniFile.o -fopenmp -lstdc++ -lpthread -L/usr/include/libMUSCLE-3.7/lib -lMUSCLE make[2]: Leaving directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg/src' make[2]: Entering directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' make[1]: Leaving directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' Making check in src make[2]: Entering directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg/src' make[2]: Entering directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' make[1]: Leaving directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/build/parsnp-i2HhOu/parsnp-1.5.4\+dfsg/debian/parsnp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' Making install in src make[2]: Entering directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg/src' make[3]: Entering directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg/src' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg/debian/parsnp../bin' /usr/bin/install -c parsnp_core '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg/debian/parsnp../bin' make[3]: Leaving directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg/src' make[2]: Leaving directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg/src' make[2]: Entering directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' make[3]: Entering directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' make[2]: Leaving directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' make[1]: Leaving directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_python3 -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' dh_fixperms chmod -x debian/parsnp/usr/share/parsnp/template.ini make[1]: Leaving directory '/build/parsnp-i2HhOu/parsnp-1.5.4+dfsg' dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'parsnp' in '../parsnp_1.5.4+dfsg-1_amd64.deb'. dpkg-deb: building package 'parsnp-dbgsym' in '../parsnp-dbgsym_1.5.4+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../parsnp_1.5.4+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/parsnp-i2HhOu /tmp/parsnp-1.5.4+dfsg-1t7xto_3a I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.fWR8HBbXD1... I: success in 568.8482 seconds md5: parsnp-dbgsym_1.5.4+dfsg-1_amd64.deb: OK md5: parsnp_1.5.4+dfsg-1_amd64.deb: OK sha1: parsnp-dbgsym_1.5.4+dfsg-1_amd64.deb: OK sha1: parsnp_1.5.4+dfsg-1_amd64.deb: OK sha256: parsnp-dbgsym_1.5.4+dfsg-1_amd64.deb: OK sha256: parsnp_1.5.4+dfsg-1_amd64.deb: OK Checksums: OK