Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/paleomix/paleomix_1.3.2-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/paleomix-1.3.2-1b5og0hvp/paleomix_1.3.2-1_amd64.buildinfo Get source package info: paleomix=1.3.2-1 Source URL: http://snapshot.notset.fr/mr/package/paleomix/1.3.2-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 ant=1.10.9-1 ant-optional=1.10.9-1 autoconf=2.69-11.1 automake=1:1.16.2-4 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc1-2 binutils=2.35.1-2 binutils-common=2.35.1-2 binutils-x86-64-linux-gnu=2.35.1-2 bowtie2=2.4.2-1 bsdextrautils=2.36-3+b2 bsdutils=1:2.36-3+b2 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 ca-certificates-java=20190909 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-16 dash=0.5.10.2-7 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 examl=3.0.22-1+b1 file=1:5.38-5 findutils=4.7.0+git20201010-2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.2.0-1 g++-10=10.2.0-16 gcc=4:10.2.0-1 gcc-10=10.2.0-16 gcc-10-base=10.2.0-16 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.4-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 ibverbs-providers=32.0-1 init-system-helpers=1.58 intltool-debian=0.35.0+20060710.5 java-common=0.72 libacl1=2.2.53-8 libactivation-java=1.2.0-2 libaopalliance-java=20070526-6 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libargs4j-java=2.33-1 libasan6=10.2.0-16 libasound2=1.2.3.2-1 libasound2-data=1.2.3.2-1 libatinject-jsr330-api-java=1.0+ds1-5 libatomic1=10.2.0-16 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libavahi-client3=0.8-3 libavahi-common-data=0.8-3 libavahi-common3=0.8-3 libbarclay-java=2.1.0-3 libbinutils=2.35.1-2 libblkid1=2.36-3+b2 libbrotli1=1.0.9-2+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-4 libc-dev-bin=2.31-4 libc6=2.31-4 libc6-dev=2.31-4 libcap-ng0=0.7.9-2.2 libcbor0=0.5.0+dfsg-2 libcc1-0=10.2.0-16 libcdi-api-java=1.2-2 libcodemodel-java=2.6+jaxb2.3.0.1-9 libcom-err2=1.45.6-1 libcommons-cli-java=1.4-2 libcommons-codec-java=1.14-1 libcommons-compress-java=1.20-1 libcommons-io-java=2.8.0-1 libcommons-jexl2-java=2.1.1-4 libcommons-lang3-java=3.11-1 libcommons-logging-java=1.2-2 libcommons-math3-java=3.6.1-3 libcommons-parent-java=43-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-2 libctf0=2.35.1-2 libcups2=2.3.3-3 libcurl3-gnutls=7.72.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.20-1 libdebconfclient0=0.255 libdebhelper-perl=13.2.1 libdeflate0=1.6-1 libdom4j-java=2.1.3-1 libdpkg-perl=1.20.5 libdrm-amdgpu1=2.4.102-1 libdrm-common=2.4.102-1 libdrm-intel1=2.4.102-1 libdrm-nouveau2=2.4.102-1 libdrm-radeon1=2.4.102-1 libdrm2=2.4.102-1 libdtd-parser-java=1.2~svn20110404-1 libedit2=3.1-20191231-1 libelf1=0.181-1 libevent-core-2.1-7=2.1.12-stable-1 libevent-pthreads-2.1-7=2.1.12-stable-1 libexpat1=2.2.10-1 libfabric1=1.11.0-2 libfastinfoset-java=1.2.12-3 libffi7=3.3-4 libfido2-1=1.5.0-2 libfile-stripnondeterminism-perl=1.9.0-1 libfontconfig1=2.13.1-4.2 libfreemarker-java=2.3.23-9 libfreetype6=2.10.2+dfsg-4 libgatk-native-bindings-java=1.0.0-2 libgcc-10-dev=10.2.0-16 libgcc-s1=10.2.0-16 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgeronimo-annotation-1.3-spec-java=1.0-1 libgeronimo-interceptor-3.0-spec-java=1.0.1-4 libgif7=5.1.9-1 libgkl-java=0.8.6+dfsg-1+b1 libgkl-jni=0.8.6+dfsg-1+b1 libgl1=1.3.2-1 libgl1-mesa-dri=20.2.1-1 libglapi-mesa=20.2.1-1 libglib2.0-0=2.66.2-1 libglvnd0=1.3.2-1 libglx-mesa0=20.2.1-1 libglx0=1.3.2-1 libgmp10=2:6.2.0+dfsg-6 libgnutls30=3.6.15-4 libgomp1=10.2.0-16 libgoogle-gson-java=2.8.6-1 libgpg-error0=1.38-2 libgssapi-krb5-2=1.17-10 libguava-java=29.0-6 libguice-java=4.2.3-1 libhogweed6=3.6-2 libhts3=1.11-2 libhtsjdk-java=2.23.0+dfsg-2 libhttpclient-java=4.5.13-1 libhttpcore-java=4.4.13-1 libhwloc-plugins=2.3.0+dfsg-2 libhwloc15=2.3.0+dfsg-2 libibverbs1=32.0-1 libicu67=67.1-4 libidn2-0=2.3.0-2 libisl22=0.22.1-1 libistack-commons-java=3.0.6-4 libitm1=10.2.0-16 libjaxb-api-java=2.3.1-1 libjaxb-java=2.3.0.1-9 libjaxen-java=1.1.6-4 libjoptsimple-java=5.0.4-4 libjpeg62-turbo=1:2.0.5-1.1 libjsoup-java=1.10.2-2 libjsr305-java=0.1~+svn49-11 libk5crypto3=1.17-10 libkeyutils1=1.6.1-2 libkrb5-3=1.17-10 libkrb5support0=1.17-10 liblcms2-2=2.9-4+b1 libldap-2.4-2=2.4.55+dfsg-1 liblightcouch-java=0.0.6-1 libllvm11=1:11.0.0-4 liblog4j2-java=2.11.2-1 liblsan0=10.2.0-16 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-5 libmagic1=1:5.38-5 libmaven-file-management-java=3.0.0-1 libmaven-parent-java=31-2 libmaven-resolver-java=1.4.2-1 libmaven-shared-io-java=3.0.0-3 libmaven-shared-utils-java=3.3.0-1 libmaven3-core-java=3.6.3-1 libmongodb-java=3.6.3-2 libmount1=2.36-3+b2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20200918-1 libnettle8=3.6-2 libnghttp2-14=1.41.0-3 libngs-java=2.10.5-1 libngs-sdk-dev=2.10.5-1 libngs-sdk2=2.10.5-1 libnl-3-200=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.29-1 libnss-nis=3.1-4 libnss-nisplus=1.3-4 libnss3=2:3.58-1 libnuma1=2.0.12-1+b1 libopenmpi3=4.0.5-7 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpciaccess0=0.16-1 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libpcsclite1=1.9.0-1 libperl5.30=5.30.3-4 libpicard-java=2.23.7+dfsg-1 libpipeline1=1.5.3-1 libplexus-archiver-java=3.6.0-2 libplexus-cipher-java=1.7-3 libplexus-classworlds-java=2.6.0-1 libplexus-component-annotations-java=2.1.0-1 libplexus-interpolation-java=1.26-1 libplexus-io-java=3.2.0-1 libplexus-sec-dispatcher-java=1.4-4 libplexus-utils2-java=3.3.0-1 libpmix2=3.2.0-1 libpng16-16=1.6.37-3 libpopt0=1.18-1 libpsl5=0.21.0-1.1 libpsm-infinipath1=3.3+20.604758e7-6+b1 libpsm2-2=11.2.185-1 libpython3-stdlib=3.8.6-1 libpython3.8-minimal=3.8.6-1 libpython3.8-stdlib=3.8.6-1 libquadmath0=10.2.0-16 librdmacm1=32.0-1 libreadline8=8.0-4 librelaxng-datatype-java=1.0+ds1-3 librngom-java=2.3.0.1-9 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.4.4-1+b1 libselinux1=3.1-2+b1 libsemanage-common=3.1-1 libsemanage1=3.1-1+b1 libsensors-config=1:3.6.0-2 libsensors5=1:3.6.0-2 libsepol1=3.1-1 libsigsegv2=2.12-2 libsisu-guice-java=4.2.0-1 libsisu-inject-java=0.3.3-1 libsisu-ioc-java=2.3.0-11 libsisu-plexus-java=0.3.3-3 libslf4j-java=1.7.25-3 libsmartcols1=2.36-3+b2 libsnappy-java=1.1.7.7-1 libsnappy-jni=1.1.7.7-1 libsnappy1v5=1.1.8-1 libsqlite3-0=3.33.0-1 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1h-1 libstax-ex-java=1.7.8-3 libstdc++-10-dev=10.2.0-16 libstdc++6=10.2.0-16 libstreambuffer-java=1.5.4-1 libsub-override-perl=0.09-2 libsystemd0=246.6-2 libtasn1-6=4.16.0-2 libtbb2=2020.3-1 libtinfo6=6.2+20200918-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.0-16 libtxw2-java=2.3.0.1-9 libubsan1=10.2.0-16 libuchardet0=0.0.7-1 libucx0=1.9.0~rc1-2 libudev1=246.6-2 libunistring2=0.9.10-4 libuuid1=2.36-3+b2 libvulkan1=1.2.154.1-1 libwagon-http-java=3.3.4-1 libwagon-provider-api-java=3.3.4-1 libx11-6=2:1.6.12-1 libx11-data=2:1.6.12-1 libx11-xcb1=2:1.6.12-1 libxau6=1:1.0.8-1+b2 libxcb-dri2-0=1.14-2 libxcb-dri3-0=1.14-2 libxcb-glx0=1.14-2 libxcb-present0=1.14-2 libxcb-sync1=1.14-2 libxcb-xfixes0=1.14-2 libxcb1=1.14-2 libxdamage1=1:1.1.5-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxfixes3=1:5.0.3-2 libxi6=2:1.7.10-1 libxml-commons-resolver1.1-java=1.2-11 libxml2=2.9.10+dfsg-6.2 libxnvctrl0=450.66-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxsom-java=2.3.0.1-9 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libxxhash0=0.8.0-1 libxz-java=1.8-2 libz3-4=4.8.9-1 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.1-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 mime-support=3.64 ncurses-base=6.2+20200918-1 ncurses-bin=6.2+20200918-1 ocl-icd-libopencl1=2.2.12-4 openjdk-11-jre=11.0.9+11-1 openjdk-11-jre-headless=11.0.9+11-1 openmpi-bin=4.0.5-7 openmpi-common=4.0.5-7 openssh-client=1:8.4p1-2 openssl=1.1.1h-1 passwd=1:4.8.1-1 patch=2.7.6-6 perl=5.30.3-4 perl-base=5.30.3-4 perl-modules-5.30=5.30.3-4 picard-tools=2.23.7+dfsg-1 po-debconf=1.0.21 python3=3.8.6-1 python3-atomicwrites=1.4.0-1 python3-attr=20.1.0-1 python3-coloredlogs=7.3-2 python3-configargparse=0.13.0-2 python3-distutils=3.8.6-1 python3-humanfriendly=8.2-3 python3-importlib-metadata=1.6.0-2 python3-lib2to3=3.8.6-1 python3-minimal=3.8.6-1 python3-more-itertools=4.2.0-3 python3-packaging=20.4-1 python3-pkg-resources=50.3.0-1 python3-pluggy=0.13.0-5 python3-py=1.9.0-1 python3-pyparsing=2.4.7-1 python3-pysam=0.15.4+ds-3+b1 python3-pytest=4.6.11-1 python3-ruamel.yaml=0.16.12-2 python3-ruamel.yaml.clib=0.2.2-1+b1 python3-setproctitle=1.1.10-3 python3-setuptools=50.3.0-1 python3-six=1.15.0-1 python3-wcwidth=0.1.9+dfsg1-2 python3-zipp=1.0.0-3 python3.8=3.8.6-1 python3.8-minimal=3.8.6-1 readline-common=8.0-4 rsync=3.2.3-2 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.30+dfsg-7 ucf=3.0043 util-linux=2.36-3+b2 x11-common=1:7.7+21 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201103T151140Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d paleomix=1.3.2-1 && mkdir -p /build/paleomix-8GbHIY && dpkg-source --no-check -x /*.dsc /build/paleomix-8GbHIY/paleomix-1.3.2 && chown -R builduser:builduser /build/paleomix-8GbHIY" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/paleomix-8GbHIY/paleomix-1.3.2 && env DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1604338952" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/paleomix-8GbHIY /tmp/paleomix-1.3.2-1b5og0hvp bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201103T151140Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.XiUv1Nm1Hl as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.XiUv1Nm1Hl Reading package lists... Building dependency tree... util-linux is already the newest version (2.36-3+b2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201103T151140Z unstable/main amd64 libfakeroot amd64 1.25.3-1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201103T151140Z unstable/main amd64 fakeroot amd64 1.25.3-1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (385 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4664 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1_amd64.deb ... Unpacking fakeroot (1.25.3-1) ... Setting up libfakeroot:amd64 (1.25.3-1) ... Setting up fakeroot (1.25.3-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201103T151140Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.XiUv1Nm1Hl Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20201103T151140Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 23s (1001 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.XiUv1Nm1Hl I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d paleomix=1.3.2-1 && mkdir -p /build/paleomix-8GbHIY && dpkg-source --no-check -x /*.dsc /build/paleomix-8GbHIY/paleomix-1.3.2 && chown -R builduser:builduser /build/paleomix-8GbHIY"' exec /tmp/mmdebstrap.XiUv1Nm1Hl Reading package lists... NOTICE: 'paleomix' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/paleomix.git Please use: git clone https://salsa.debian.org/med-team/paleomix.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1148 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main paleomix 1.3.2-1 (dsc) [2297 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main paleomix 1.3.2-1 (tar) [1136 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main paleomix 1.3.2-1 (diff) [10.2 kB] Fetched 1148 kB in 1s (1044 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'paleomix_1.3.2-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting paleomix in /build/paleomix-8GbHIY/paleomix-1.3.2 dpkg-source: info: unpacking paleomix_1.3.2.orig.tar.gz dpkg-source: info: unpacking paleomix_1.3.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying xfail_command_tests.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/paleomix-8GbHIY/paleomix-1.3.2 && env DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1604338952" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.XiUv1Nm1Hl dpkg-buildpackage: info: source package paleomix dpkg-buildpackage: info: source version 1.3.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.8 setup.py clean running clean removing '/build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:232: python3.8 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix copying paleomix/yaml.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix copying paleomix/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix copying paleomix/node.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix copying paleomix/nodegraph.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix copying paleomix/pipeline.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix copying paleomix/main.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/bowtie2.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/mafft.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/samtools.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/sequences.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/bedtools.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/bwa.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/commands.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/adapterremoval.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/examl.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/mapdamage.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/phylip.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/formats.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/validation.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/picard.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/raxml.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes copying paleomix/nodes/newick.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools copying paleomix/tools/depths.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools copying paleomix/tools/gtf_to_bed.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools copying paleomix/tools/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools copying paleomix/tools/coverage.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools copying paleomix/tools/factory.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools copying paleomix/tools/dupcheck.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools copying paleomix/tools/rmdup_collapsed.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools copying paleomix/tools/cleanup.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools copying paleomix/tools/vcf_filter.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools copying paleomix/tools/validate_fastq.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools copying paleomix/tools/vcf_to_fasta.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines copying paleomix/pipelines/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd copying paleomix/atomiccmd/command.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd copying paleomix/atomiccmd/builder.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd copying paleomix/atomiccmd/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd copying paleomix/atomiccmd/sets.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd copying paleomix/atomiccmd/pprint.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources copying paleomix/resources/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/sampling.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/argparse.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/system.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/timer.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/fileutils.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/vcffilter.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/makefile.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/vcfwrap.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/testing.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/bamfiles.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/sequences.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/bedtools.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/versions.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/rtools.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/text.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/utilities.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/procs.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common copying paleomix/common/logging.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/bam_stats copying paleomix/tools/bam_stats/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/bam_stats copying paleomix/tools/bam_stats/common.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/bam_stats copying paleomix/tools/bam_stats/coverage.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/bam_stats creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/makefile.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/example.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/pipeline.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/mkfile.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/config.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/makefile.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/trim_pipeline.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/pipeline.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/paths.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/mkfile.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/config.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/nodes.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/database.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/common.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/build_db.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/pipeline.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/config.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/build_mito.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/build_tped.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/parts copying paleomix/pipelines/phylo/parts/msa.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/parts copying paleomix/pipelines/phylo/parts/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/parts copying paleomix/pipelines/phylo/parts/phylo.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/parts copying paleomix/pipelines/phylo/parts/genotype.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/parts creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/lane.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/prefix.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/target.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/summary.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/statistics.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/sample.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/reads.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/library.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/nuclear.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/mitochondria.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/common.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/report.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/summary.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/admixture.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats copying paleomix/common/formats/msa.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats copying paleomix/common/formats/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats copying paleomix/common/formats/fasta.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats copying paleomix/common/formats/fastq.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats copying paleomix/common/formats/_common.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats copying paleomix/common/formats/phylip.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats copying paleomix/common/formats/_graph.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats copying paleomix/common/formats/newick.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats running egg_info creating paleomix.egg-info writing paleomix.egg-info/PKG-INFO writing dependency_links to paleomix.egg-info/dependency_links.txt writing entry points to paleomix.egg-info/entry_points.txt writing requirements to paleomix.egg-info/requires.txt writing top-level names to paleomix.egg-info/top_level.txt writing manifest file 'paleomix.egg-info/SOURCES.txt' reading manifest file 'paleomix.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'paleomix/yaml/CHANGES' warning: no files found matching 'paleomix/yaml/LICENSE' warning: no files found matching 'paleomix/yaml/PKG-INFO' warning: no files found matching 'paleomix/yaml/README' warning: no files found matching 'pylint.conf' writing manifest file 'paleomix.egg-info/SOURCES.txt' creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline copying paleomix/resources/examples/bam_pipeline/makefile.yaml -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_01.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_02.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_03.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_04.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_01.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_02.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_03.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_04.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_01.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_02.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_03.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_01.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_02.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_03.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_01.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_02.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_03.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_01.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_02.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_03.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.collapsed.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.collapsed.truncated.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.singleton.truncated.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/prefixes copying paleomix/resources/examples/bam_pipeline/prefixes/rCRS.fasta -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/prefixes creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline copying paleomix/resources/examples/phylo_pipeline/setup.sh -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline copying paleomix/resources/examples/phylo_pipeline/synthesize_reads.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment copying paleomix/resources/examples/phylo_pipeline/alignment/makefile.yaml -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment copying paleomix/resources/examples/phylo_pipeline/alignment/setup.sh -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying paleomix/resources/examples/phylo_pipeline/alignment/prefixes/bonobo.fasta -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying paleomix/resources/examples/phylo_pipeline/alignment/prefixes/chimpanzee.fasta -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying paleomix/resources/examples/phylo_pipeline/alignment/prefixes/gorilla.fasta -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying paleomix/resources/examples/phylo_pipeline/alignment/prefixes/rCRS.fasta -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying paleomix/resources/examples/phylo_pipeline/alignment/prefixes/rCRS.fasta.fai -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying paleomix/resources/examples/phylo_pipeline/alignment/prefixes/sumatran_orangutan.fasta -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying paleomix/resources/examples/phylo_pipeline/alignment/prefixes/white_handed_gibbon.fasta -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/phylogeny copying paleomix/resources/examples/phylo_pipeline/phylogeny/makefile.yaml -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/phylogeny creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions copying paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions/rCRS.non_coding.bed -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions copying paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions/rCRS.protein_coding.CDS.bed -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/reports creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/reports/zonkey copying paleomix/resources/reports/zonkey/report.css -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/reports/zonkey creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts/common copying paleomix/resources/rscripts/common/requires.r -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts/common creating /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts/zonkey copying paleomix/resources/rscripts/zonkey/admixture.r -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts/zonkey copying paleomix/resources/rscripts/zonkey/coverage.r -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts/zonkey copying paleomix/resources/rscripts/zonkey/pca.r -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts/zonkey copying paleomix/resources/rscripts/zonkey/tinytree.r -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts/zonkey copying paleomix/resources/rscripts/zonkey/treemix.r -> /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts/zonkey debian/rules override_dh_auto_test make[1]: Entering directory '/build/paleomix-8GbHIY/paleomix-1.3.2' PATH=/build/paleomix-8GbHIY/paleomix-1.3.2/bin/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin dh_auto_test I: pybuild pybuild:284: cp -a README.rst /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build; I: pybuild base:232: cd /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build; python3.8 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.8.6, pytest-4.6.11, py-1.9.0, pluggy-0.13.0 rootdir: /build/paleomix-8GbHIY/paleomix-1.3.2, inifile: setup.cfg collected 1494 items tests/node_test.py ..................................................... [ 3%] ......................................... [ 6%] tests/nodegraph_test.py ......... [ 6%] tests/atomiccmd_test/builder_test.py ................................... [ 9%] ...................................................... [ 12%] tests/atomiccmd_test/command_test.py ................................... [ 15%] ........................................................................ [ 20%] ................ [ 21%] tests/atomiccmd_test/pprint_test.py .................................... [ 23%] .. [ 23%] tests/atomiccmd_test/sets_test.py ...................................... [ 26%] ............ [ 26%] tests/common_tests/bedtools_test.py ............................... [ 29%] tests/common_tests/fileutils_test.py ................................... [ 31%] ...................................................................... [ 36%] tests/common_tests/makefile_test.py .................................... [ 38%] ........................................................................ [ 43%] ........................................................................ [ 48%] ........................................................................ [ 52%] ........................................................................ [ 57%] ............................... [ 59%] tests/common_tests/sampling_test.py ........................ [ 61%] tests/common_tests/sequences_test.py ................................... [ 63%] ............... [ 64%] tests/common_tests/text_test.py ....................................... [ 67%] tests/common_tests/utilities_test.py ................................... [ 69%] ........................................................................ [ 74%] .. [ 74%] tests/common_tests/versions_test.py .................................... [ 77%] ............................................................ [ 81%] tests/common_tests/formats_tests/fasta_test.py ......................... [ 82%] ............. [ 83%] tests/common_tests/formats_tests/fastq_test.py ......................... [ 85%] ........... [ 86%] tests/common_tests/formats_tests/msa_test.py ........................... [ 87%] ................... [ 89%] tests/common_tests/formats_tests/newick_test.py ........................ [ 90%] ........................................................................ [ 95%] ...... [ 95%] tests/common_tests/formats_tests/phylip_test.py ........ [ 96%] tests/tools_test/factory_test.py xXXXXXXXXXXXXXXXXxXXXXXXXXXXXXXXXXXXXXX [ 99%] XXXXXXXXXXXxx [100%] ============= 1442 passed, 4 xfailed, 48 xpassed in 33.73 seconds ============== make[1]: Leaving directory '/build/paleomix-8GbHIY/paleomix-1.3.2' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix running install running build running build_py running egg_info writing paleomix.egg-info/PKG-INFO writing dependency_links to paleomix.egg-info/dependency_links.txt writing entry points to paleomix.egg-info/entry_points.txt writing requirements to paleomix.egg-info/requires.txt writing top-level names to paleomix.egg-info/top_level.txt reading manifest file 'paleomix.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'paleomix/yaml/CHANGES' warning: no files found matching 'paleomix/yaml/LICENSE' warning: no files found matching 'paleomix/yaml/PKG-INFO' warning: no files found matching 'paleomix/yaml/README' warning: no files found matching 'pylint.conf' writing manifest file 'paleomix.egg-info/SOURCES.txt' running install_lib creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8 creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/README.rst -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/yaml.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/bowtie2.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/mafft.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/samtools.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/sequences.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/bedtools.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/bwa.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/commands.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/adapterremoval.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/examl.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/mapdamage.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/phylip.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/formats.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/validation.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/adapterremoval.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/bedtools.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/phylip.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/sequences.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/examl.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/newick.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/mafft.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/samtools.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/bwa.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/formats.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/bowtie2.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/picard.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/validation.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/raxml.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/mapdamage.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/__pycache__/commands.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/picard.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/raxml.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodes/newick.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/depths.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/gtf_to_bed.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/coverage.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/bam_stats copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/bam_stats/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/bam_stats copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/bam_stats/common.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/bam_stats copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/bam_stats/coverage.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/bam_stats creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/bam_stats/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/bam_stats/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/bam_stats/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/bam_stats/__pycache__/common.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/bam_stats/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/bam_stats/__pycache__/coverage.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/bam_stats/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/factory.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/dupcheck.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/rmdup_collapsed.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/cleanup.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/vcf_filter.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/__pycache__/depths.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/__pycache__/vcf_filter.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/__pycache__/coverage.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/__pycache__/rmdup_collapsed.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/__pycache__/vcf_to_fasta.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/__pycache__/factory.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/__pycache__/cleanup.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/__pycache__/validate_fastq.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/validate_fastq.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/tools/vcf_to_fasta.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/makefile.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/example.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/parts/msa.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/parts/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/parts/phylo.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/parts creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/parts/__pycache__/phylo.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/parts/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/parts/__pycache__/genotype.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/parts/__pycache__/msa.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/parts/genotype.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/pipeline.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/__pycache__/mkfile.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/__pycache__/makefile.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/__pycache__/example.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/__pycache__/pipeline.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/__pycache__/config.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/mkfile.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/phylo/config.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/makefile.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/trim_pipeline.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/lane.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/prefix.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/target.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/summary.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/statistics.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/sample.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/__pycache__/lane.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/__pycache__/statistics.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/__pycache__/prefix.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/__pycache__/reads.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/__pycache__/library.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/__pycache__/sample.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/__pycache__/target.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/__pycache__/summary.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/reads.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/parts/library.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/pipeline.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/paths.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/__pycache__/paths.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/__pycache__/mkfile.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/__pycache__/trim_pipeline.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/__pycache__/makefile.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/__pycache__/pipeline.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/__pycache__/config.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/__pycache__/nodes.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/mkfile.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/config.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/bam/nodes.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/database.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/common.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/build_db.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts/nuclear.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts/mitochondria.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts/common.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts/report.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts/summary.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts/admixture.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts/__pycache__/admixture.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts/__pycache__/nuclear.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts/__pycache__/common.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts/__pycache__/mitochondria.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts/__pycache__/report.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/parts/__pycache__/summary.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/pipeline.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/__pycache__/build_tped.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/__pycache__/build_db.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/__pycache__/common.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/__pycache__/build_mito.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/__pycache__/database.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/__pycache__/pipeline.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/__pycache__/config.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/config.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/build_mito.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/zonkey/build_tped.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipelines/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/__pycache__ creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd/command.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd/builder.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd/sets.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd/pprint.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd/__pycache__/command.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd/__pycache__/pprint.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd/__pycache__/builder.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/atomiccmd/__pycache__/sets.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd/__pycache__ creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/setup.sh -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/chimpanzee.fasta -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/rCRS.fasta.fai -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/gorilla.fasta -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/white_handed_gibbon.fasta -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/bonobo.fasta -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/sumatran_orangutan.fasta -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/rCRS.fasta -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/makefile.yaml -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/alignment/setup.sh -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/synthesize_reads.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/phylogeny/makefile.yaml -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions/rCRS.protein_coding.CDS.bed -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions/rCRS.non_coding.bed -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/prefixes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/prefixes/rCRS.fasta -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/prefixes copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/makefile.yaml -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_02.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_03.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_04.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_03.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_02.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_01.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_02.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_02.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_01.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_01.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_01.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_03.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_02.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.collapsed.truncated.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.collapsed.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.singleton.truncated.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_01.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_03.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_03.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_04.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_02.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_03.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_01.fastq.gz -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/bam_pipeline/data creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/rscripts creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/rscripts/zonkey copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts/zonkey/treemix.r -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/rscripts/zonkey copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts/zonkey/admixture.r -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/rscripts/zonkey copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts/zonkey/coverage.r -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/rscripts/zonkey copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts/zonkey/tinytree.r -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/rscripts/zonkey copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts/zonkey/pca.r -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/rscripts/zonkey creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/rscripts/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/rscripts/common/requires.r -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/rscripts/common creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/reports creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/reports/zonkey copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/reports/zonkey/report.css -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/reports/zonkey creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/resources/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/node.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/nodegraph.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/pipeline.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/__pycache__/main.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/__pycache__/node.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/__pycache__/nodegraph.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/__pycache__/yaml.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/__pycache__/pipeline.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/__pycache__ creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/sampling.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/argparse.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/system.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/timer.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/fileutils.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/vcffilter.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/makefile.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/vcfwrap.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/testing.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/bamfiles.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/sequences.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/bedtools.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/versions.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/msa.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/__init__.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/fasta.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/fastq.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/_common.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/phylip.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/__pycache__/phylip.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/__pycache__/fasta.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/__pycache__/newick.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/__pycache__/fastq.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/__pycache__/msa.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/__pycache__/_common.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/__pycache__/_graph.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/_graph.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/formats/newick.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/rtools.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/text.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/utilities.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/procs.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/logging.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common creating /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/bedtools.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/logging.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/argparse.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/timer.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/vcffilter.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/sequences.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/utilities.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/__init__.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/testing.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/versions.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/rtools.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/procs.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/fileutils.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/sampling.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/text.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/bamfiles.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/makefile.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/system.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/common/__pycache__/vcfwrap.cpython-38.pyc -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__pycache__ copying /build/paleomix-8GbHIY/paleomix-1.3.2/.pybuild/cpython3_3.8/build/paleomix/main.py -> /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/yaml.py to yaml.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/bowtie2.py to bowtie2.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/mafft.py to mafft.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/samtools.py to samtools.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/sequences.py to sequences.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/bedtools.py to bedtools.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/bwa.py to bwa.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/commands.py to commands.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/adapterremoval.py to adapterremoval.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/examl.py to examl.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/mapdamage.py to mapdamage.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/phylip.py to phylip.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/formats.py to formats.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/validation.py to validation.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/picard.py to picard.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/raxml.py to raxml.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodes/newick.py to newick.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/depths.py to depths.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/gtf_to_bed.py to gtf_to_bed.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/coverage.py to coverage.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/bam_stats/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/bam_stats/common.py to common.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/bam_stats/coverage.py to coverage.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/factory.py to factory.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/dupcheck.py to dupcheck.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/rmdup_collapsed.py to rmdup_collapsed.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/cleanup.py to cleanup.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/vcf_filter.py to vcf_filter.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/validate_fastq.py to validate_fastq.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/tools/vcf_to_fasta.py to vcf_to_fasta.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/makefile.py to makefile.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/example.py to example.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/parts/msa.py to msa.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/parts/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/parts/phylo.py to phylo.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/parts/genotype.py to genotype.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/pipeline.py to pipeline.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/mkfile.py to mkfile.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/phylo/config.py to config.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/makefile.py to makefile.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/trim_pipeline.py to trim_pipeline.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/lane.py to lane.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/prefix.py to prefix.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/target.py to target.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/summary.py to summary.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/statistics.py to statistics.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/sample.py to sample.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/reads.py to reads.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/parts/library.py to library.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/pipeline.py to pipeline.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/paths.py to paths.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/mkfile.py to mkfile.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/config.py to config.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/bam/nodes.py to nodes.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/database.py to database.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/common.py to common.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/build_db.py to build_db.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/nuclear.py to nuclear.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/mitochondria.py to mitochondria.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/common.py to common.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/report.py to report.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/summary.py to summary.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/parts/admixture.py to admixture.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/pipeline.py to pipeline.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/config.py to config.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/build_mito.py to build_mito.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipelines/zonkey/build_tped.py to build_tped.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd/command.py to command.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd/builder.py to builder.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd/sets.py to sets.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/atomiccmd/pprint.py to pprint.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/resources/examples/phylo_pipeline/synthesize_reads.py to synthesize_reads.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/node.py to node.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/nodegraph.py to nodegraph.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/pipeline.py to pipeline.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/sampling.py to sampling.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/argparse.py to argparse.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/system.py to system.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/timer.py to timer.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/fileutils.py to fileutils.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/vcffilter.py to vcffilter.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/makefile.py to makefile.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/vcfwrap.py to vcfwrap.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/testing.py to testing.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/bamfiles.py to bamfiles.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/sequences.py to sequences.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/bedtools.py to bedtools.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/versions.py to versions.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/msa.py to msa.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/__init__.py to __init__.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/fasta.py to fasta.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/fastq.py to fastq.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/_common.py to _common.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/phylip.py to phylip.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/_graph.py to _graph.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/formats/newick.py to newick.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/rtools.py to rtools.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/text.py to text.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/utilities.py to utilities.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/procs.py to procs.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/common/logging.py to logging.cpython-38.pyc byte-compiling /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix/main.py to main.cpython-38.pyc running install_egg_info Copying paleomix.egg-info to /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/lib/python3.8/dist-packages/paleomix-1.3.2.egg-info Skipping SOURCES.txt running install_scripts Installing paleomix script to /build/paleomix-8GbHIY/paleomix-1.3.2/debian/paleomix/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/paleomix-8GbHIY/paleomix-1.3.2' dh_install find debian -name LICENSE -delete find debian -name README.rst -delete make[1]: Leaving directory '/build/paleomix-8GbHIY/paleomix-1.3.2' debian/rules override_dh_installdocs make[1]: Entering directory '/build/paleomix-8GbHIY/paleomix-1.3.2' dh_installdocs # since tests dir contains empty files which are used afterwards for # testing and dh_installdocs is ignoring empty files we need to make # sure all files are really copied rsync -a -v tests debian/paleomix/usr/share/doc/paleomix sending incremental file list tests/atomiccmd_test/ tests/common_tests/ tests/common_tests/formats_tests/ tests/data/ tests/data/empty_file_1 tests/data/empty_file_2 sent 941 bytes received 76 bytes 2,034.00 bytes/sec total size is 334,736 speedup is 329.14 # test runner is seeking for paleomix modules in source - we use inside the installed package ### sed -i 's:(find paleomix -mindepth 1:(find /usr/lib/python*/dist-packages/paleomix -mindepth 1:' debian/*/usr/share/doc/*/tests/run #echo "====== Also empty files belong to the docs ======" #find debian -name "empty_file*" #find debian -name "timestamp_*" #echo "====== Hope something was printed between these lines ====" # # This test tries to execute setup.sh which does not work outside source directory find debian/paleomix/usr/share/doc/ -name fileutils_test.py -delete find debian/paleomix/usr/share/doc/ -name setup.h -delete make[1]: Leaving directory '/build/paleomix-8GbHIY/paleomix-1.3.2' dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/paleomix-8GbHIY/paleomix-1.3.2' dh_python3 --verbose --shebang=/usr/bin/python3 D: dh_python3 dh_python3:161: version: 4.20201102 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '--verbose', '--shebang=/usr/bin/python3'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': True, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': '/usr/bin/python3', 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': None} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.8,3.9 (default=3.8) D: dh_python3 debhelper:152: source=paleomix, binary packages=['paleomix'] D: dh_python3 dh_python3:183: processing package paleomix... D: dh_python3 fs:49: moving files from debian/paleomix/usr/lib/python3.8/dist-packages to debian/paleomix/usr/lib/python3/dist-packages/ I: dh_python3 tools:114: replacing shebang in debian/paleomix/usr/bin/paleomix D: dh_python3 fs:260: package paleomix details = {'requires.txt': {'debian/paleomix/usr/lib/python3/dist-packages/paleomix-1.3.2.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package paleomix D: dh_python3 pydist:142: trying to find dependency for coloredlogs>=10.0 (python=None) D: dh_python3 pydist:142: trying to find dependency for configargparse>=0.13.0 (python=None) D: dh_python3 pydist:142: trying to find dependency for pysam>=0.10.0 (python=None) D: dh_python3 pydist:142: trying to find dependency for ruamel.yaml>=0.16.0 (python=None) D: dh_python3 pydist:142: trying to find dependency for setproctitle>=1.1.0 (python=None) D: dh_python3 depends:275: D={'python3-configargparse', 'python3-setproctitle', 'python3-ruamel.yaml', 'python3-coloredlogs', 'python3-pysam', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] make[1]: Leaving directory '/build/paleomix-8GbHIY/paleomix-1.3.2' dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/paleomix-8GbHIY/paleomix-1.3.2' dh_fixperms for rs in `find debian -iname "*.r"` ; do \ if head -n 1 $rs | grep -q '^#!/usr/bin/.*Rscript' ; then \ chmod +x $rs ; \ else \ chmod -x $rs ; \ fi ; \ done make[1]: Leaving directory '/build/paleomix-8GbHIY/paleomix-1.3.2' dh_missing -a -O--buildsystem=pybuild dh_dwz -a -a -O--buildsystem=pybuild dh_strip -a -a -O--buildsystem=pybuild dh_makeshlibs -a -a -O--buildsystem=pybuild dh_shlibdeps -a -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'paleomix' in '../paleomix_1.3.2-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../paleomix_1.3.2-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/paleomix-8GbHIY /tmp/paleomix-1.3.2-1b5og0hvp I: cleaning package lists and apt cache... W: deleting files in /tmp: pytest-of-builduser W: deleting files in /tmp: hsperfdata_root I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.XiUv1Nm1Hl... I: success in 743.2160 seconds md5: paleomix_1.3.2-1_amd64.deb: OK sha1: paleomix_1.3.2-1_amd64.deb: OK sha256: paleomix_1.3.2-1_amd64.deb: OK Checksums: OK