Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/o/openstructure/openstructure_2.3.1-6_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/openstructure-2.3.1-6lclcj1da/openstructure_2.3.1-6_amd64.buildinfo Get source package info: openstructure=2.3.1-6 Source URL: http://snapshot.notset.fr/mr/package/openstructure/2.3.1-6/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.121 autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.38-3 binutils-common=2.38-3 binutils-x86-64-linux-gnu=2.38-3 blt=2.5.3+dfsg-4.1 bsdextrautils=2.38-4 bsdutils=1:2.38-4 build-essential=12.9 bzip2=1.0.8-5 clustalw=2.1+lgpl-7 cmake=3.23.1-2 cmake-data=3.23.1-2 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.3.0-1 dash=0.5.11+git20210903+057cd650a4ed-8 debconf=1.5.79 debhelper=13.7.1 debianutils=5.7-0.2 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-python=5.20220403 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.7 dpkg-dev=1.21.7 dssp=4.0.4-1 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-4 findutils=4.9.0-3 fontconfig=2.13.1-4.4 fontconfig-config=2.13.1-4.4 fonts-dejavu-core=2.37-2 fonts-lyx=2.3.6-1 g++=4:11.2.0-2 g++-11=11.3.0-1 gcc=4:11.2.0-2 gcc-11=11.3.0-1 gcc-11-base=11.3.0-1 gcc-12-base=12-20220428-1 gettext=0.21-6 gettext-base=0.21-6 gfortran-11=11.3.0-1 grep=3.7-1 groff-base=1.22.4-8 gzip=1.12-1 hostname=3.23 ibverbs-providers=39.0-1+b1 icu-devtools=71.1-2 init-system-helpers=1.62 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libarchive13=3.6.0-1 libasan6=11.3.0-1 libatomic1=12-20220428-1 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libbinutils=2.38-3 libblas3=3.10.1-1 libblkid1=2.38-4 libboost-all-dev=1.74.0.3 libboost-atomic-dev=1.74.0.3 libboost-atomic1.74-dev=1.74.0-14+b1 libboost-atomic1.74.0=1.74.0-14+b1 libboost-chrono-dev=1.74.0.3 libboost-chrono1.74-dev=1.74.0-14+b1 libboost-chrono1.74.0=1.74.0-14+b1 libboost-container-dev=1.74.0.3 libboost-container1.74-dev=1.74.0-14+b1 libboost-container1.74.0=1.74.0-14+b1 libboost-context-dev=1.74.0.3 libboost-context1.74-dev=1.74.0-14+b1 libboost-context1.74.0=1.74.0-14+b1 libboost-coroutine-dev=1.74.0.3 libboost-coroutine1.74-dev=1.74.0-14+b1 libboost-coroutine1.74.0=1.74.0-14+b1 libboost-date-time-dev=1.74.0.3 libboost-date-time1.74-dev=1.74.0-14+b1 libboost-date-time1.74.0=1.74.0-14+b1 libboost-dev=1.74.0.3 libboost-exception-dev=1.74.0.3 libboost-exception1.74-dev=1.74.0-14+b1 libboost-fiber-dev=1.74.0.3 libboost-fiber1.74-dev=1.74.0-14+b1 libboost-fiber1.74.0=1.74.0-14+b1 libboost-filesystem-dev=1.74.0.3 libboost-filesystem1.74-dev=1.74.0-14+b1 libboost-filesystem1.74.0=1.74.0-14+b1 libboost-graph-dev=1.74.0.3 libboost-graph-parallel-dev=1.74.0.3 libboost-graph-parallel1.74-dev=1.74.0-14+b1 libboost-graph-parallel1.74.0=1.74.0-14+b1 libboost-graph1.74-dev=1.74.0-14+b1 libboost-graph1.74.0=1.74.0-14+b1 libboost-iostreams-dev=1.74.0.3 libboost-iostreams1.74-dev=1.74.0-14+b1 libboost-iostreams1.74.0=1.74.0-14+b1 libboost-locale-dev=1.74.0.3 libboost-locale1.74-dev=1.74.0-14+b1 libboost-locale1.74.0=1.74.0-14+b1 libboost-log-dev=1.74.0.3 libboost-log1.74-dev=1.74.0-14+b1 libboost-log1.74.0=1.74.0-14+b1 libboost-math-dev=1.74.0.3 libboost-math1.74-dev=1.74.0-14+b1 libboost-math1.74.0=1.74.0-14+b1 libboost-mpi-dev=1.74.0.3 libboost-mpi-python-dev=1.74.0.3 libboost-mpi-python1.74-dev=1.74.0-14+b1 libboost-mpi-python1.74.0=1.74.0-14+b1 libboost-mpi1.74-dev=1.74.0-14+b1 libboost-mpi1.74.0=1.74.0-14+b1 libboost-nowide-dev=1.74.0.3 libboost-nowide1.74-dev=1.74.0-14+b1 libboost-nowide1.74.0=1.74.0-14+b1 libboost-numpy-dev=1.74.0.3 libboost-numpy1.74-dev=1.74.0-14+b1 libboost-numpy1.74.0=1.74.0-14+b1 libboost-program-options-dev=1.74.0.3 libboost-program-options1.74-dev=1.74.0-14+b1 libboost-program-options1.74.0=1.74.0-14+b1 libboost-python-dev=1.74.0.3 libboost-python1.74-dev=1.74.0-14+b1 libboost-python1.74.0=1.74.0-14+b1 libboost-random-dev=1.74.0.3 libboost-random1.74-dev=1.74.0-14+b1 libboost-random1.74.0=1.74.0-14+b1 libboost-regex-dev=1.74.0.3 libboost-regex1.74-dev=1.74.0-14+b1 libboost-regex1.74.0=1.74.0-14+b1 libboost-serialization-dev=1.74.0.3 libboost-serialization1.74-dev=1.74.0-14+b1 libboost-serialization1.74.0=1.74.0-14+b1 libboost-stacktrace-dev=1.74.0.3 libboost-stacktrace1.74-dev=1.74.0-14+b1 libboost-stacktrace1.74.0=1.74.0-14+b1 libboost-system-dev=1.74.0.3 libboost-system1.74-dev=1.74.0-14+b1 libboost-system1.74.0=1.74.0-14+b1 libboost-test-dev=1.74.0.3 libboost-test1.74-dev=1.74.0-14+b1 libboost-test1.74.0=1.74.0-14+b1 libboost-thread-dev=1.74.0.3 libboost-thread1.74-dev=1.74.0-14+b1 libboost-thread1.74.0=1.74.0-14+b1 libboost-timer-dev=1.74.0.3 libboost-timer1.74-dev=1.74.0-14+b1 libboost-timer1.74.0=1.74.0-14+b1 libboost-tools-dev=1.74.0.3 libboost-type-erasure-dev=1.74.0.3 libboost-type-erasure1.74-dev=1.74.0-14+b1 libboost-type-erasure1.74.0=1.74.0-14+b1 libboost-wave-dev=1.74.0.3 libboost-wave1.74-dev=1.74.0-14+b1 libboost-wave1.74.0=1.74.0-14+b1 libboost1.74-dev=1.74.0-14+b1 libboost1.74-tools-dev=1.74.0-14+b1 libbrotli1=1.0.9-2+b3 libbsd0=0.11.6-1 libbz2-1.0=1.0.8-5 libc-bin=2.33-7 libc-dev-bin=2.33-7 libc6=2.33-7 libc6-dev=2.33-7 libcap-ng0=0.7.9-2.2+b2 libcap2=1:2.44-1 libcbor0.8=0.8.0-2 libcc1-0=12-20220428-1 libcifpp-data=2.0.5-1 libcifpp2=2.0.5-1+b1 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.38-3 libctf0=2.38-3 libcups2=2.4.1op1-2 libcurl3-gnutls=7.83.0-1 libcurl4=7.83.0-1 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.14.0-1 libdebconfclient0=0.262 libdebhelper-perl=13.7.1 libdeflate-dev=1.10-2 libdeflate0=1.10-2 libdouble-conversion3=3.1.7-4 libdpkg-perl=1.21.7 libdrm-amdgpu1=2.4.110-1 libdrm-common=2.4.110-1 libdrm-nouveau2=2.4.110-1 libdrm-radeon1=2.4.110-1 libdrm2=2.4.110-1 libedit2=3.1-20210910-1 libegl-dev=1.4.0-1 libegl-mesa0=22.0.2-1 libegl1=1.4.0-1 libeigen3-dev=3.4.0-2 libelf1=0.186-1 libevdev2=1.12.1+dfsg-1 libevent-2.1-7=2.1.12-stable-5 libevent-core-2.1-7=2.1.12-stable-5 libevent-dev=2.1.12-stable-5 libevent-extra-2.1-7=2.1.12-stable-5 libevent-openssl-2.1-7=2.1.12-stable-5 libevent-pthreads-2.1-7=2.1.12-stable-5 libexpat1=2.4.8-1 libexpat1-dev=2.4.8-1 libfabric1=1.11.0-3 libffi8=3.4.2-4 libfftw3-bin=3.3.8-2 libfftw3-dev=3.3.8-2 libfftw3-double3=3.3.8-2 libfftw3-long3=3.3.8-2 libfftw3-quad3=3.3.8-2 libfftw3-single3=3.3.8-2 libfido2-1=1.10.0-1 libfile-stripnondeterminism-perl=1.13.0-1 libfontconfig1=2.13.1-4.4 libfreetype6=2.11.1+dfsg-2 libfribidi0=1.0.8-2.1 libgbm1=22.0.2-1 libgcc-11-dev=11.3.0-1 libgcc-s1=12-20220428-1 libgcrypt20=1.10.1-2 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgfortran-11-dev=11.3.0-1 libgfortran5=12-20220428-1 libgl-dev=1.4.0-1 libgl1=1.4.0-1 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libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxslt1.1=1.1.34-4 libxss1=1:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.12-1+b1 libzstd1=1.5.2+dfsg-1 linux-libc-dev=5.17.3-1 login=1:4.11.1+dfsg1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3+b1 media-types=7.1.0 mpi-default-bin=1.14 mpi-default-dev=1.14 ncurses-base=6.3+20220423-1 ncurses-bin=6.3+20220423-1 ocl-icd-libopencl1=2.2.14-3 openmpi-bin=4.1.3-2 openmpi-common=4.1.3-2 openssh-client=1:9.0p1-1 passwd=1:4.11.1+dfsg1-2 patch=2.7.6-7 perl=5.34.0-4 perl-base=5.34.0-4 perl-modules-5.34=5.34.0-4 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 procps=2:3.3.17-7+b1 python-matplotlib-data=3.5.1-2 python3=3.10.4-1+b1 python3-appdirs=1.4.4-2 python3-attr=21.2.0-1 python3-brotli=1.0.9-2+b3 python3-cycler=0.11.0-1 python3-dateutil=2.8.1-6 python3-decorator=4.4.2-2 python3-dev=3.10.4-1+b1 python3-distutils=3.9.12-1 python3-fonttools=4.32.0-1 python3-fs=2.4.12-1 python3-kiwisolver=1.3.2-1+b1 python3-lib2to3=3.9.12-1 python3-lxml=4.8.0-1 python3-lz4=4.0.0+dfsg-1 python3-matplotlib=3.5.1-2+b1 python3-minimal=3.10.4-1+b1 python3-mpmath=1.2.1-2 python3-numpy=1:1.21.5-1 python3-packaging=21.3-1 python3-pil=9.1.0-1 python3-pil.imagetk=9.1.0-1 python3-pkg-resources=59.6.0-1.2 python3-pyparsing=3.0.7-2 python3-pyqt5=5.15.6+dfsg-1+b2 python3-pyqt5.sip=12.10.1-1 python3-scipy=1.7.3-2 python3-six=1.16.0-3 python3-sympy=1.10.1-1 python3-tk=3.9.12-1 python3-tz=2022.1-1 python3-ufolib2=0.13.1+dfsg1-1 python3-unicodedata2=14.0.0+ds-8 python3.10=3.10.4-3 python3.10-dev=3.10.4-3 python3.10-minimal=3.10.4-3 python3.9=3.9.12-1 python3.9-minimal=3.9.12-1 qt5-qmake=5.15.2+dfsg-16+b1 qt5-qmake-bin=5.15.2+dfsg-16+b1 qtbase5-dev=5.15.2+dfsg-16+b1 qtbase5-dev-tools=5.15.2+dfsg-16+b1 qtchooser=66-2 readline-common=8.1.2-1.2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 shared-mime-info=2.2-1 sip-dev=4.19.25+dfsg-3+b1 sysvinit-utils=3.03-1 tar=1.34+dfsg-1 tk8.6-blt2.5=2.5.3+dfsg-4.1 tzdata=2022a-1 ucf=3.0043 unicode-data=14.0.0-1.1 util-linux=2.38-4 util-linux-extra=2.38-4 voronota=1.22.3149-1 x11-common=1:7.7+23 x11proto-dev=2022.1-1 xkb-data=2.35.1-1 xorg-sgml-doctools=1:1.11-1.1 xtrans-dev=1.4.0-1 xz-utils=5.2.5-2.1 zlib1g=1:1.2.11.dfsg-4 zlib1g-dev=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220505T025003Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220505T025003Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220628T211246Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220501T215056Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d openstructure=2.3.1-6 && mkdir -p /build/openstructure-IPKzyM && dpkg-source --no-check -x /*.dsc /build/openstructure-IPKzyM/openstructure-2.3.1 && chown -R builduser:builduser /build/openstructure-IPKzyM" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/openstructure-IPKzyM/openstructure-2.3.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1651567287" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/openstructure-IPKzyM /tmp/openstructure-2.3.1-6lclcj1da bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.7KzZOFbPrn as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.7KzZOFbPrn Reading package lists... Building dependency tree... util-linux is already the newest version (2.38-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable/main amd64 libfakeroot amd64 1.28-1 [48.2 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable/main amd64 fakeroot amd64 1.28-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (1128 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4627 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.28-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.28-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.28-1_amd64.deb ... Unpacking fakeroot (1.28-1) ... Setting up libfakeroot:amd64 (1.28-1) ... Setting up fakeroot (1.28-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220505T025003Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220505T025003Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220628T211246Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220501T215056Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.7KzZOFbPrn Get:1 http://snapshot.notset.fr/archive/debian/20220505T025003Z bookworm InRelease [130 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220628T211246Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220505T025003Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220505T025003Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220505T025003Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220505T025003Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220505T025003Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220505T025003Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220505T025003Z bookworm/main Sources [11.9 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220505T025003Z bookworm/main amd64 Packages [11.4 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220628T211246Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220628T211246Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220628T211246Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220628T211246Z unstable/main amd64 Packages [12.5 MB] Fetched 36.1 MB in 29s (1230 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.7KzZOFbPrn I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d openstructure=2.3.1-6 && mkdir -p /build/openstructure-IPKzyM && dpkg-source --no-check -x /*.dsc /build/openstructure-IPKzyM/openstructure-2.3.1 && chown -R builduser:builduser /build/openstructure-IPKzyM"' exec /tmp/mmdebstrap.7KzZOFbPrn Reading package lists... NOTICE: 'openstructure' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/openstructure.git Please use: git clone https://salsa.debian.org/debichem-team/openstructure.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 120 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220505T025003Z bookworm/main openstructure 2.3.1-6 (dsc) [4541 B] Get:2 http://snapshot.notset.fr/archive/debian/20220505T025003Z bookworm/main openstructure 2.3.1-6 (tar) [36.4 MB] Get:3 http://snapshot.notset.fr/archive/debian/20220505T025003Z bookworm/main openstructure 2.3.1-6 (diff) [84.1 MB] Fetched 120 MB in 1min 33s (1292 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'openstructure_2.3.1-6.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting openstructure in /build/openstructure-IPKzyM/openstructure-2.3.1 dpkg-source: info: unpacking openstructure_2.3.1.orig.tar.gz dpkg-source: info: unpacking openstructure_2.3.1-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python-dist-packages.patch dpkg-source: info: applying fix-quotes-in-ENV.patch dpkg-source: info: applying skip-network-tests.patch dpkg-source: info: applying ost-compare-structures.patch dpkg-source: info: applying ost_config.patch dpkg-source: info: applying skip-dssp-tests.patch dpkg-source: info: applying 86c621b68f23f98fc30ed230be222ce4dd9432cd.patch dpkg-source: info: applying b2798f24c37cb2ff0f46b929a4d41b4f3ce54a68.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/openstructure-IPKzyM/openstructure-2.3.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1651567287" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.7KzZOFbPrn dpkg-buildpackage: info: source package openstructure dpkg-buildpackage: info: source version 2.3.1-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary-arch dh binary-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1' dh_auto_configure -- -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON -DOPEN_MM_PLUGIN_DIR=/usr/lib/x86_64-linux-gnu/openmm/plugins cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON -DOPEN_MM_PLUGIN_DIR=/usr/lib/x86_64-linux-gnu/openmm/plugins .. -- The CXX compiler identification is GNU 11.3.0 -- The C compiler identification is GNU 11.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- Found Python: /usr/bin/python3.10 (found suitable version "3.10.4", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed -- Found Boost package: python310 -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: unit_test_framework -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: filesystem system -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: iostreams regex -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: program_options -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: regex -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: thread chrono date_time atomic -- Found OpenGL: /usr/lib/x86_64-linux-gnu/libGL.so -- Found EIGEN: /usr/include/eigen3 (Required is at least version "3.2.0") -- Found SQLITE3: /usr/lib/x86_64-linux-gnu/libsqlite3.so (Required is at least version "3.7.13") -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so (found version "1.6.37") -- Found FFTW: /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Found TIFF: /usr/lib/x86_64-linux-gnu/libtiff.so (found version "4.3.0") -- Found OpenMM: /usr/lib/x86_64-linux-gnu/libOpenMM.so -- Searching for python module PyQt5 for /usr/bin/python3.10 -- Found python module PyQt5 -- Searching for python module PyQt5.sip for /usr/bin/python3.10 -- Found python module PyQt5.sip -- OpenStructure will be built with the following options: Install Prefix (-DPREFIX) : /usr RPath in install (-DUSE_RPATH) : OFF Info support (-DENABLE_INFO) : ON Graphical interface (-DENABLE_GUI) : ON OpenGL support (-DENABLE_GFX) : ON Shader support (-DUSE_SHADER) : OFF Numpy support (-DUSE_NUMPY) : OFF SpaceNav Device support (-DENABLE_SPNAV) : OFF OpenMM support (-DENABLE_MM) : ON OpenMM plugins (-DOPEN_MM_PLUGIN_DIR) : /usr/lib/x86_64-linux-gnu/openmm/plugins Optimize (-DOPTIMIZE) : OFF Profiling support (-DPROFILE) : OFF Double Precision (-DUSE_DOUBLE_PRECISION) : OFF Compound Lib (-DCOMPOUND_LIB) : NONE TMAlign and TMScore (-DCOMPILE_TMTOOLS) : OFF Static Libraries (-DENABLE_STATIC) : OFF Debian/Ubuntu directory layout (-DUBUNTU_LAYOUT) : ON Hidden object visibility (-DHIDDEN_VISIBILITY) : OFF -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1' dh_auto_build -a cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/openstructure-IPKzyM/openstructure-2.3.1 -B/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/CMakeFiles /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake --color= make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake --color= make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake --color= make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake --color= make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/__init__.py.in -DOUT_FILE=__init__.py -DALL_ADDITIONAL_MODULES=,\'gui\',\'gfx\',\'img\',\'info\' -P /build/openstructure-IPKzyM/openstructure-2.3.1/cmake_support/substitute.cmake make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./__init__.py make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/conop/./__init__.py make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake --color= make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/bin make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/./cleanup.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/conop/./cleanup.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/db/./__init__.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/geom/./__init__.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gfx/./__init__.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/build make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/add_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/add_icon.png make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/images/logo-small.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/images/logo-small.png make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./lga.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./lga.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/__init__.py [ 0%] Built target ost_db_pymod make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 0%] Built target ost_conop_pymod make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake --color= make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./hbplus.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hbplus.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/./py_gfx_obj.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gfx/./py_gfx_obj.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/tests make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 0%] Built target subst___init__.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/color_options_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/color_options_widget.py make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./msms.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./msms.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/close_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/close_icon.png [ 0%] Built target ost_geom_pymod make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend [ 0%] Built target gui_images cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/color_select_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/color_select_widget.py make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 0%] Built target create_stage make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/dng/__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/__init__.py make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./__init__.py make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./tmtools.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./tmtools.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/img/./__init__.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/img/alg/./__init__.py make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/info/./__init__.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/critical_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/critical_icon.png cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/dng/termuse.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/termuse.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/./init_context_menu.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_context_menu.py [ 0%] Built target ost_gfx_pymod make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/combo_options_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/combo_options_widget.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./dssp.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./dssp.py make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/delete_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/delete_icon.png [ 0%] Built target ost_img_pymod make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/io/./__init__.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./clustalw.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./clustalw.py make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/distance_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/distance_icon.png make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake --color= make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/cpk_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/cpk_widget.py [ 0%] Built target ost_info_pymod [ 0%] Built target ost_img_alg_pymod cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/dng/superpositiondialog.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/superpositiondialog.py make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/./remote.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/io/./remote.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/./__init__.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/DependInfo.cmake --color= make -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/custom_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/custom_widget.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./utils.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./utils.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/find_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/find_icon.png make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/gradient_editor_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_editor_widget.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/./init_menubar.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_menubar.py make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./forcefield.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./forcefield.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/gradient_info_handler.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_info_handler.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/mm/./__init__.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./ff_reader.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./ff_reader.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./naccess.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./naccess.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/./antechamber.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/mm/./antechamber.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/./init_spacenav.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_spacenav.py [ 0%] Built target ost_mol_pymod cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/gradient_list_model.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_list_model.py make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./hhblits.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hhblits.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/./init_splash.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_splash.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./buildingblock.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./buildingblock.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/./repository.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/io/./repository.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/dng/init.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/init.py make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./__init__.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/information_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/information_icon.png cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/gradient_preset_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_preset_widget.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 0%] Built target ost_mol_mm_pymod make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/./trajectory_viewer.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./trajectory_viewer.py make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./block_modifiers.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./block_modifiers.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/hsc_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/hsc_widget.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/./__init__.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./hhblits2.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hhblits2.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/./views.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./views.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/dng/menu.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/menu.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./hhblits3.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hhblits3.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/immutable_gradient_info_handler.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/immutable_gradient_info_handler.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./gromacs_block_modifiers.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./gromacs_block_modifiers.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 0%] Built target ost_seq_pymod make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 0%] Built target ost_io_pymod cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/./helpwidget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./helpwidget.py make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/map_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/map_icon.png [ 0%] Built target ost_gui_dng_pymod cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./blast.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./blast.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod/./__init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./__init__.py make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./heuristic_block_modifiers.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./heuristic_block_modifiers.hh make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/scripts /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./cadscore.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./cadscore.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/scripts /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake --color= make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/scripts /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./interaction.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./interaction.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/immutable_preset_info_handler.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/immutable_preset_info_handler.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/./superpose.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./superpose.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/menubar_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/menubar_icon.png cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/./table.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./table.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./settings.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./settings.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./kclust.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./kclust.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod/./mat.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./mat.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/rigid_body_manipulator_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/init_inspector.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/init_inspector.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-IPKzyM/openstructure-2.3.1/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.10 -DPython_VERSION=3.10.4 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.10/dist-packages/ -P /build/openstructure-IPKzyM/openstructure-2.3.1/cmake_support/substitute.cmake make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./ialign.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./ialign.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/./qsscoring.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./qsscoring.py make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-IPKzyM/openstructure-2.3.1/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.10 -DPython_VERSION=3.10.4 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.10/dist-packages/ -P /build/openstructure-IPKzyM/openstructure-2.3.1/cmake_support/substitute.cmake make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-IPKzyM/openstructure-2.3.1/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.10 -DPython_VERSION=3.10.4 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.10/dist-packages/ -P /build/openstructure-IPKzyM/openstructure-2.3.1/cmake_support/substitute.cmake cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/./gosty_startup.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./gosty_startup.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/./trajectory_analysis.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./trajectory_analysis.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/selection_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/selection_icon.png cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./simulation.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./simulation.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod/./renumber.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./renumber.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/inspector_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/inspector_widget.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/./mmseqs2.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./mmseqs2.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./modeller.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./modeller.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/./structure_analysis.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./structure_analysis.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 0%] Built target subst_ost make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend [ 0%] Built target ost_gui_pymod cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod/./aaindex.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./aaindex.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/scripts /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake --color= make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/./helix_kinks.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./helix_kinks.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/actions /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/actions /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake --color= [ 0%] Built target subst_ost_config make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend [ 0%] Built target subst_ost_startup.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./observer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./observer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/show_sidebar_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/show_sidebar_icon.png cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/map_level_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/map_level_widget.py make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/config /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/config /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/./hbond.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./hbond.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod/aaindex1 /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex1 make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-IPKzyM/openstructure-2.3.1/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.10 -DPython_VERSION=3.10.4 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.10/dist-packages/ -P /build/openstructure-IPKzyM/openstructure-2.3.1/cmake_support/substitute.cmake [ 0%] Built target ost_bindings_pymod cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./state_extractor.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./state_extractor.hh make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/site_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/site_icon.png make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/actions/ost-compare-structures /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/export_helper/vector.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/preset.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./system_creator.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./system_creator.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/config/./base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./base.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/split_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/split_icon.png make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/warning_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/warning_icon.png cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod/aaindex2 /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex2 cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./topology_creator.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./topology_creator.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/remote.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/remote.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/export_helper/generic_property_def.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh [ 0%] Built target ost_mol_alg_pymod make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./def.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./def.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake --color= [ 0%] Built target subst_dng make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/config/./config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./config.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/share/icons/refresh.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/refresh.png make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/preset_editor_list_model.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_editor_list_model.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod/aaindex3 /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex3 cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./exc.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./exc.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/config/./dllexport.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./dllexport.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./index.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./index.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/preset_editor_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_editor_widget.py [ 0%] Built target actions make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/export_helper/vec_to_list_conv.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/./settings.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./settings.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./topology.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./topology.hh make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/preset_info_handler.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_info_handler.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/impl/sequence_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./geom.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./geom.hh [ 0%] Built target scene_icons make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/config/./version.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./version.hh make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/test_utils/compare_files.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/test_utils/compare_files.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./info.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./info.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./mat.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/./steep.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./steep.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/./stutil.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./stutil.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/impl/sequence_impl_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh [ 0%] Built target ost_seq_alg_pymod make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./info_error.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./info_error.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/preset_list_model.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_list_model.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./info_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/preset_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_widget.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./generic_property.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./generic_property.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./mat2.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat2.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/render_mode_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/render_mode_widget.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/./table.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./table.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./info_impl_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/impl/sequence_list_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh [ 0%] Built target ost_config_headers make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./integrity_error.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./integrity_error.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/./table_selector.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./table_selector.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./mat3.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat3.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./info_handle.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./info_handle.hh [ 0%] Built target ost_mol_mm_headers cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/impl/sequence_list_iterator.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./invalid_handle.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./invalid_handle.hh make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/pointer_iterator.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/./xmlrunner.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./xmlrunner.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./info_group.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./info_group.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/render_op.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/render_op.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/atom_group.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/./sequence_list.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_list.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake --color= make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/./testutils.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./testutils.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/./sequence_handle.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./ptr_observer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./ptr_observer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different __init__.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/__init__.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./info_item.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./info_item.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./mat4.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat4.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/atom_prop.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/./conop.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/conop/./conop.hh make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./log.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./log.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/./alignment_handle.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/src/./wrap_tmalign.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./log_sink.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./log_sink.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./vec.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/./module_config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/./module_config.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./info_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./info_fw.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/src/./sqlite_wrap.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/./processor.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/conop/./processor.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/src/./sqlite_conv.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/atom_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./module_config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./module_config.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/render_options_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/render_options_widget.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/./sequence_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/src/./module_config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/db/./module_config.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./vec2.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec2.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/./amino_acids.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/conop/./amino_acids.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/atom_impl_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/./aligned_region.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_region.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./info_path.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./info_path.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/scene_observer_impl.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/scene_observer_impl.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/src/./linear_indexer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/db/./linear_indexer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./profile.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./profile.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/./diag.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/conop/./diag.hh [ 0%] Built target ost_base_pymod make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/./aligned_column.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/chain_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./info_set.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./info_set.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./dyn_cast.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./dyn_cast.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/src/./binary_container.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/db/./binary_container.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/./model_check.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/conop/./model_check.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./vec3.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec3.hh [ 0%] Built target ost_bindings_headers make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/./heuristic.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/conop/./heuristic.hh make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./alignment_opts.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./vec4.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec4.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./info_visitor.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./info_visitor.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./clip_alignment.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/./compound.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/./aligned_column_iterator.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./vecmat_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./info_verbose_visitor.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/scene_selection_helper.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/scene_selection_helper.py make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/raster_image/raster_image.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/chain_impl_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/src/./extract_data_helper.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/./compound_lib.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./item_type.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/./invalid_sequence.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/simple_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/simple_widget.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/dispatch.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./conservation.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/connector_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/./views_from_sequences.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/./module_config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/conop/./module_config.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/sline_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/sline_widget.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./contact_prediction_score.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh [ 0%] Built target ost_db_headers make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./vecmat2_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/connector_impl_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./stdint.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./stdint.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./vecmat3_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./contact_weight_matrix.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/dihedral.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/toolbar_options_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/toolbar_options_widget.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./stdint_msc.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./stdint_msc.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/./profile_handle.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/./profile_handle.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./vecmat4_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/./rule_based.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/conop/./rule_based.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./circular_iterator.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./anisotropic.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/trace_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/trace_widget.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./distance_map.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./constants.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./constants.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./auto_correlate.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/./minimal_compound_lib.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state_base_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/entity_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./geom_info_conversion.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./clear.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clear.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./entropy.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./range.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./range.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./composite.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/tube_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/tube_widget.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/./item_type_cast.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type_cast.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state_def.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./composite2.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./module_config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./module_config.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./clip_min_max.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/entity_impl_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh [ 0%] Built target ost_seq_headers make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./conjugate.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./global_align.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./composite3.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/./compound_lib_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state_factory.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/fragment_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./units.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./units.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh [ 0%] Built target ost_info_headers cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/fragment_impl_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./ins_del.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/chemdict_parser.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./composite_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite_op.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./convolute.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./convolute.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./message.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./message.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/star_parser.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/star_parser.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./composite2_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./local_align.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/./ring_finder.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/conop/./ring_finder.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/query_ast.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./platform.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./platform.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/uniform_color_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/uniform_color_widget.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./composite3_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3_op.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/query_ast_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./string_ref.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./string_ref.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./svd_superpose.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/visibility_op.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/visibility_op.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/query_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./pod_vector.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./pod_vector.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/line_trace_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/line_trace_widget.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./module_config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./correlate.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./correlate.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/wireframe_widget.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/wireframe_widget.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./sec_structure_segments.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./cross_correlate.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/query_impl_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state_visitor.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/query_editor.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/query_editor.py [ 0%] Built target ost_conop_headers cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./density_slice.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./fixed_string.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./fixed_string.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./local_dist_diff_test.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/residue_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./module_config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state_algorithm.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./tri_matrix.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./tri_matrix.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./aligned_cuboid.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./dft.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./dft.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/residue_impl_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./fft.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fft.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./distance_test_common.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/map_iso_gen.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/mmcif_reader.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/surface_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./vec_mat_predicates.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/index.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/index.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/map_iso_gen_s.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/mmcif_info.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh [ 0%] Built target ost_gui_scene_pymod cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./boost_filesystem_helper.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./quat.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./quat.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/type_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./fftw_helper.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/./paged_array.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/./paged_array.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/surface_impl_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/value_holder.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/map_iso_gen_s.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./distance_rmsd_test.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./semiglobal_align.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/io_profile.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/io_profile.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/torsion_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./transform.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./transform.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./superpose_frames.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./algorithm.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./algorithm.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./sequence_identity.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/dcd_io.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./fill.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fill.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/map_iso_spec.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_option_group.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./point_cloud.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./point_cloud.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./filter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./filter.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/torsion_impl_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/map_octree.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh [ 0%] Built target ost_base_headers cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/./module_config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/geom/./module_config.hh make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./circle_mask.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./circle_mask.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/config /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/config /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/entity_io_crd_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/octree_isocont.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./fourier_filters.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./atom_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./composite_mask.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./composite_mask.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_options.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./data_algorithm.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./data_algorithm.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./filter_clashes.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'. make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/cartoon_renderer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh [ 0%] Built target ost_geom_headers cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/entity_io_pqr_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./gaussian.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_bar.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./sequence_similarity.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./atom_handle.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_handle.hh [ 0%] Built target ost_config make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/entity_io_mae_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/custom_renderer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./gaussian_laplacian.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake --color= cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./construct_cbeta.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/selection_tool.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./data_observer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./data_observer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/cpk_renderer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/entity_io_mmcif_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./highest_peak_search_3d.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./clash_score.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/measure_tool.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/entity_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./atom_view.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_view.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/debug_renderer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_option.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./histogram.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./histogram.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/pdb_reader.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/simple_renderer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./trajectory_analysis.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./bond_handle.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_handle.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./line_iterator.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./data_types.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./data_types.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/entity_io_pdb_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/sline_renderer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./structure_analysis.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_manager.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./subst_weight_matrix.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o -MF CMakeFiles/ost_geom.dir/mat3.cc.o.d -o CMakeFiles/ost_geom.dir/mat3.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/mat3.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./local_sigma_threshold.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./bond_table.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_table.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/pdb_writer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o -MF CMakeFiles/ost_geom.dir/mat2.cc.o.d -o CMakeFiles/ost_geom.dir/mat2.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/mat2.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./variance_map.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./data.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./data.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./chain_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/entity_io_sdf_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_options_widget.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/trace_renderer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./consistency_checks.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./debug.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./debug.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./dllexport.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./dllexport.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/manipulator.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./extent_iterator.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_iterator.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./mask_image.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/line_trace_renderer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./chain_handle.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_handle.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/backbone_trace.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_options_win.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./negate.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./negate.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/sdf_reader.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/mouse_event.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./extent_mask.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_mask.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/entity_detail.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./pdbize.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/map_tool.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./adjacency_bitmap.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./extent.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./extent.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/sdf_writer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./normalizer_factory.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./consistency_checks.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/entity_renderer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/base_row.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./norm.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/save_entity.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/save_entity.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./contact_overlap.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./image_factory.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./image_factory.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./chain_view.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_view.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./normalizer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./domain_find.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/background_painter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/trace_renderer_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./chain_type.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_type.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/load_entity.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_entity.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/conservation_painter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./image_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./image_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./norm_linear.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/./hmm_score.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/painter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/secstr_row.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/surface_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./similarity_matrix.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./image_handle_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./norm_log.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./chem_class.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_class.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/connect_renderer_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/load_surface.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_surface.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./norm_od.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./image_handle.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/surface_io_msms_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh [ 0%] Built target ost_seq_alg_headers cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./chem_type.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_type.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./power_spectrum.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/mapped_property.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./image_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./image_impl.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o -MF CMakeFiles/ost_geom.dir/mat4.cc.o.d -o CMakeFiles/ost_geom.dir/mat4.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/mat4.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./accessibility.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./coord_group.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_group.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/entity_renderer_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./randomize.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./randomize.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./image_list.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./image_list.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./coord_source.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_source.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./sec_struct.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/tabulated_trig.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./smooth_mask_image.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./in_mem_coord_source.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./image_state_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./coord_frame.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_frame.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./nonstandard.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/fast_spheres.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./stat.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/pdb_str.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_model.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./image_state.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/render_options.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./molck.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./molck.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./stat_accumulator.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./editor_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/stereochemical_params_reader.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/line_render_options.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_row.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./editor_type_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./stat_min_max.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./image.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./image.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/omf.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/mol/omf.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/custom_render_options.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./threshold.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./threshold.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/cpk_render_options.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./find_membrane.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./mol.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./mol.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./inverted_mask.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./inverted_mask.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./transcendentals.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/load_map.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/load_map.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/simple_render_options.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./map.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./map.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/./entity_to_density.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./entity_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/sline_render_options.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./mask_base_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./transform.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_df3_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/tick_painter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/line_trace_render_options.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./mask_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./entity_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh [ 0%] Built target ost_mol_alg_headers cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/title_row.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./transform_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./entity_handle.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_handle.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/cartoon_render_options.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o -MF CMakeFiles/ost_geom.dir/vec3.cc.o.d -o CMakeFiles/ost_geom.dir/vec3.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/vec3.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./alg_transform.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/image_format.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/image_format.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./entity_observer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./mask_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/trace_render_options.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_dx_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./entity_observer_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./mask_visitor.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_visitor.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./mask.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./mask.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/base_view_object.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/color_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./alg_mirror.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./entity_property_mapper.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_spi_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./module_config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./module_config.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/by_element_color_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./entity_view.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_view.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./alg_shift.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/by_chain_color_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_situs_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./discrete_shrink.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./normalizer_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./entity_visitor.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./transformation_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/uniform_color_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./transformations.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformations.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/main_thread_runner.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_mrc_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./normalizer_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_dat_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./fractional_shift.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./entity_visitor_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/output_redirector.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./module_config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./module_config.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./polar.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./polar.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_ipl_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./handle_type_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./null_data.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./null_data.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/completer_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./line_average.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_average.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/gradient_color_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./observable.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./observable.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./ics_editor.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./ics_editor.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/dir_model.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/./rscrosscorr.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/entity_view_color_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/gutter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./not_connected_error.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./paste_impl.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./paste_impl.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./property_id.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./property_id.hh [ 1%] Built target ost_img_alg_headers cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_nanoscope_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/path_completer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_png_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./query.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./query.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat2_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/vecmat2_op.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_context_parser.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./peak.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./peak.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_dm3_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./phase.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./phase.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./query_error.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_error.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_completer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/map_handle_color_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./query_state.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_state.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./physical_units.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./physical_units.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./residue_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./residue_handle.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_handle.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/tiff_util.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./render_pass.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_pass.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./pixel_sampling.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./residue_prop.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_prop.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/jpk_util.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/img/jpk_util.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./point_list.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./point_list.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./bitmap_io.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./residue_view.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_view.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./collada_exporter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./sec_structure.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./sec_structure.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/sequence_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./color.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./color.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./entity.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./spatial_organizer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/fasta_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./entity_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./surface.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_tokenizer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gl_helper.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/pir_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./surface_builder.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_builder.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./point.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./point.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/promod_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gfx.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./builder.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./builder.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gfx_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/profile_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/text_logger.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./surface_handle.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_handle.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gfx_node.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./polygon_mask.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./polygon_mask.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/hhm_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gfx_node_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./progress.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./progress.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./surface_prop.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_prop.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter_worker.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./size.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./size.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/pssm_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gfx_node_visitor.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./torsion_handle.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./spherical_mask.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./spherical_mask.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/clustal_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gfx_object_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/load.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/seq/load.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/shell_history.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./transfer_connectivity.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./util.cc /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./util.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gfx_object.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/save.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/seq/save.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./util.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./util.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./query_view_wrapper.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gfx_object_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./view_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./value_util.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./value_util.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./binary_data_sink.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/state_machine.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gfx_prim.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./view_type_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./vecmat.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./vecmat.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./symmetry_node.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./io_manager.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./io_manager.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./view_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gfx_test_object.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./xcs_editor.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/./mask_info_convert.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/state.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./bounding_box.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./bounding_box.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./transform.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./transform.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./glwin_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./binary_data_source.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_source.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./input.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./input.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/transition.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./prim_list.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./prim_list.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/./module_config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/mol/./module_config.hh [ 1%] Built target ost_img_headers cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/transition_guard.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat3_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/vecmat3_op.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/button_bar.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./scene.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/drop_box.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./module_config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./module_config.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./selection.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./selection.hh [ 1%] Built target ost_mol_headers cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./surface.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./surface.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./container_serialization.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./container_serialization.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/panel_bar.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat4_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/vecmat4_op.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./swap_util.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./swap_util.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./io_utils.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./io_utils.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./io_exception.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./io_exception.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/panel_manager.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./convert.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./convert.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./texture.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./texture.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/bottom_bar.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./converting_streams.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./converting_streams.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./formatted_line.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./formatted_line.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/button_box.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_box.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/chemdict_parser.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./vertex_array.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/star_parser.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./star_parser.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/event_button.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/event_button.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/panel_widget_container.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/panel_bar_widget_holder.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/mmcif_reader.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/side_bar.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./vertex_array_helper.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/mmcif_info.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_info.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./scene_observer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/splitter_panel_bar.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gl_include.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_include.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/tabbed_panel_bar.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./glext_include.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glext_include.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/io_profile.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./io_profile.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/context_menu.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/dcd_io.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./dcd_io.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./render_mode.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_mode.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/entity_io_crd_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/current_selection_node.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./material.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./material.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/entity_io_pqr_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/custom_part_node.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gradient.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/entity_io_mae_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/entity_node.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gradient_manager.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/entity_part_node.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/entity_io_mmcif_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/gfx_scene_node.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/entity_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/pdb_reader.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_reader.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/label_node.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/entity_io_pdb_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/pdb_writer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_writer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/root_node.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./module_config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./module_config.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/entity_io_sdf_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/sdf_reader.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_reader.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/render_mode_node.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/render_modes_node.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/sdf_writer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_writer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/scene_node.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/save_entity.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./save_entity.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/load_entity.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./load_entity.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./primitives.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./primitives.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/surface_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./povray_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/scene_win.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/load_surface.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./load_surface.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/scene_win_model.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./povray.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/surface_io_msms_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o -MF CMakeFiles/ost_geom.dir/composite2.cc.o.d -o CMakeFiles/ost_geom.dir/composite2.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/composite2.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./exporter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/messages/message_widget.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/pdb_str.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_str.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/stereochemical_params_reader.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./exporter_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/messages/message_box_widget.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./mol/omf.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./omf.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./gost_exporter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/messages/log_reader.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./seq/sequence_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/argand.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./seq/fasta_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./map_iso.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./seq/pir_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./seq/promod_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./map_slab.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_slab.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./seq/profile_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/./map_iso_prop.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./seq/hhm_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh [ 1%] Built target ost_gfx_headers cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./seq/pssm_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/draw_overlay.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o -MF CMakeFiles/ost_geom.dir/composite3.cc.o.d -o CMakeFiles/ost_geom.dir/composite3.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/composite3.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./seq/clustal_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/drawing_functions.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./seq/load.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./load.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/fft_panel.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./seq/save.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./save.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/info_panel.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/img2qt.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/load_map.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./load_map.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/mask_overlay.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/map_io_df3_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/null_overlay.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/image_format.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./image_format.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/overlay.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/map_io_dx_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/overlay_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/map_io_spi_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/overlay_base_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/map_io_situs_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/overlay_manager.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/map_io_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/map_io_mrc_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/map_io_dat_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/map_io_ipl_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/map_io_jpk_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/pointlist_overlay.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/map_io_nanoscope_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/map_io_png_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/strategies.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/map_io_dm3_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/map_io_tiff_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/strategies_fw.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/tiff_util.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./tiff_util.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/./img/jpk_util.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/io/./jpk_util.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/viewer_normalizer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./file_browser.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_browser.hh [ 1%] Built target ost_io_headers [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o -MF CMakeFiles/ost_geom.dir/composite2_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite2_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/composite2_op.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./file_type_dialog.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./file_viewer.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_viewer.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./gl_canvas.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./gl_win.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_win.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./scene_menu.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_menu.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./gosty_app.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./gosty_app.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./admin.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./admin.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./module_config.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./module_config.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./main.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./main.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./main_area.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_area.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./perspective.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./perspective.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./scene_selection.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_selection.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./main_window.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_window.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./dock_widget.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./dock_widget.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./thin_splitter.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./widget.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./widget_geom_handler.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./widget_pool.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_pool.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./widget_registry.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_registry.hh cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./widget_state_saver.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o -MF CMakeFiles/ost_geom.dir/composite3_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite3_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/composite3_op.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/./file_loader.hh /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_loader.hh make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 1%] Built target ost_gui_headers [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o -MF CMakeFiles/ost_geom.dir/quat.cc.o.d -o CMakeFiles/ost_geom.dir/quat.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/quat.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o -MF CMakeFiles/ost_geom.dir/transform.cc.o.d -o CMakeFiles/ost_geom.dir/transform.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/transform.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -MF CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o.d -o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/aligned_cuboid.cc [ 2%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o -MF CMakeFiles/ost_geom.dir/point_cloud.cc.o.d -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/src/point_cloud.cc [ 2%] Linking CXX shared library ../../../stage/lib/libost_geom.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_geom.so.2.3 -o ../../../stage/lib/libost_geom.so.2.3.1 CMakeFiles/ost_geom.dir/mat2.cc.o CMakeFiles/ost_geom.dir/mat3.cc.o CMakeFiles/ost_geom.dir/mat4.cc.o CMakeFiles/ost_geom.dir/vec3.cc.o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o CMakeFiles/ost_geom.dir/composite2.cc.o CMakeFiles/ost_geom.dir/composite3.cc.o CMakeFiles/ost_geom.dir/composite2_op.cc.o CMakeFiles/ost_geom.dir/composite3_op.cc.o CMakeFiles/ost_geom.dir/quat.cc.o CMakeFiles/ost_geom.dir/transform.cc.o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o CMakeFiles/ost_geom.dir/point_cloud.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_geom.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3 ../../../stage/lib/libost_geom.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 2%] Built target ost_geom make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake --color= make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec2.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_vec2.cc [ 3%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/profile.cc.o cd 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/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/log.cc.o -MF CMakeFiles/ost_base.dir/log.cc.o.d -o CMakeFiles/ost_base.dir/log.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/log.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec4.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec4.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_vec4.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o -MF CMakeFiles/ost_base.dir/generic_property.cc.o.d -o CMakeFiles/ost_base.dir/generic_property.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/generic_property.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec3.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_vec3.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_vecmat2_op.cc [ 3%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o -MF CMakeFiles/ost_base.dir/log_sink.cc.o.d -o CMakeFiles/ost_base.dir/log_sink.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/log_sink.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_vecmat3_op.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_vecmat4_op.cc [ 3%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/units.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/units.cc.o -MF CMakeFiles/ost_base.dir/units.cc.o.d -o CMakeFiles/ost_base.dir/units.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/units.cc [ 3%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o -MF CMakeFiles/ost_base.dir/string_ref.cc.o.d -o CMakeFiles/ost_base.dir/string_ref.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/string_ref.cc [ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o -MF CMakeFiles/ost_base.dir/platform.cc.o.d -o CMakeFiles/ost_base.dir/platform.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/platform.cc [ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/message.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/message.cc.o -MF CMakeFiles/ost_base.dir/message.cc.o.d -o CMakeFiles/ost_base.dir/message.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/message.cc [ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o -MF CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o.d -o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/test_utils/compare_files.cc [ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -MF CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o.d -o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/src/boost_filesystem_helper.cc [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/wrap_geom.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/wrap_geom.cc.o -MF CMakeFiles/_ost_geom.dir/wrap_geom.cc.o.d -o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/wrap_geom.cc [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat2.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_mat2.cc [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat3.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat3.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat3.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_mat3.cc [ 5%] Linking CXX shared library ../../../stage/lib/libost_base.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_base.so.2.3 -o ../../../stage/lib/libost_base.so.2.3.1 CMakeFiles/ost_base.dir/generic_property.cc.o CMakeFiles/ost_base.dir/log.cc.o CMakeFiles/ost_base.dir/log_sink.cc.o CMakeFiles/ost_base.dir/profile.cc.o CMakeFiles/ost_base.dir/units.cc.o CMakeFiles/ost_base.dir/string_ref.cc.o CMakeFiles/ost_base.dir/platform.cc.o CMakeFiles/ost_base.dir/message.cc.o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_vecmat2_op.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_vec2.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_base.so.2.3 ../../../stage/lib/libost_base.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_vec3.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 5%] Built target ost_base make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_vec4.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o -MF CMakeFiles/ost_info.dir/info_impl.cc.o.d -o CMakeFiles/ost_info.dir/info_impl.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/info_impl.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_vecmat4_op.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_vecmat3_op.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat4.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat4.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_mat4.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/wrap_geom.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite2.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_composite2.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_mat2.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite3.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_composite3.cc [ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_composite2_op.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_mat3.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_composite3_op.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_mat4.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_composite3.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o -MF CMakeFiles/_ost_geom.dir/export_quat.cc.o.d -o CMakeFiles/_ost_geom.dir/export_quat.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_quat.cc [ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o -MF CMakeFiles/_ost_geom.dir/export_transform.cc.o.d -o CMakeFiles/_ost_geom.dir/export_transform.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_transform.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_composite2.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o -MF CMakeFiles/ost_info.dir/info_handle.cc.o.d -o CMakeFiles/ost_info.dir/info_handle.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/info_handle.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_composite2_op.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o -MF CMakeFiles/ost_info.dir/info_group.cc.o.d -o CMakeFiles/ost_info.dir/info_group.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/info_group.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_composite3_op.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_transform.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o -MF CMakeFiles/ost_info.dir/info_item.cc.o.d -o CMakeFiles/ost_info.dir/info_item.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/info_item.cc [ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o -MF CMakeFiles/ost_info.dir/info_path.cc.o.d -o CMakeFiles/ost_info.dir/info_path.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/info_path.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/export_quat.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o -MF CMakeFiles/ost_info.dir/info_set.cc.o.d -o CMakeFiles/ost_info.dir/info_set.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/info_set.cc [ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_visitor.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/info_visitor.cc [ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -MF CMakeFiles/ost_info.dir/geom_info_conversion.cc.o.d -o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/geom_info_conversion.cc [ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/src/info_verbose_visitor.cc [ 7%] Linking CXX shared library ../../../stage/lib/libost_info.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_info.so.2.3 -o ../../../stage/lib/libost_info.so.2.3.1 CMakeFiles/ost_info.dir/info_impl.cc.o CMakeFiles/ost_info.dir/info_handle.cc.o CMakeFiles/ost_info.dir/info_group.cc.o CMakeFiles/ost_info.dir/info_item.cc.o CMakeFiles/ost_info.dir/info_path.cc.o CMakeFiles/ost_info.dir/info_set.cc.o CMakeFiles/ost_info.dir/info_visitor.cc.o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 ../../../stage/lib/libost_base.so.2.3.1 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_info.so.2.3.1 ../../../stage/lib/libost_info.so.2.3 ../../../stage/lib/libost_info.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 7%] Built target ost_info make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o -MF CMakeFiles/ost_mol.dir/atom_base.cc.o.d -o CMakeFiles/ost_mol.dir/atom_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/atom_base.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o -MF CMakeFiles/ost_mol.dir/atom_view.cc.o.d -o CMakeFiles/ost_mol.dir/atom_view.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/atom_view.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o -MF CMakeFiles/ost_img.dir/composite_mask.cc.o.d -o CMakeFiles/ost_img.dir/composite_mask.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/composite_mask.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o -MF CMakeFiles/ost_img.dir/circle_mask.cc.o.d -o CMakeFiles/ost_img.dir/circle_mask.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/circle_mask.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o -MF CMakeFiles/ost_mol.dir/bond_handle.cc.o.d -o CMakeFiles/ost_mol.dir/bond_handle.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/bond_handle.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o -MF CMakeFiles/ost_img.dir/data_algorithm.cc.o.d -o CMakeFiles/ost_img.dir/data_algorithm.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/data_algorithm.cc [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o -MF CMakeFiles/ost_mol.dir/atom_handle.cc.o.d -o CMakeFiles/ost_mol.dir/atom_handle.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/atom_handle.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o -MF CMakeFiles/ost_img.dir/data_observer.cc.o.d -o CMakeFiles/ost_img.dir/data_observer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/data_observer.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o -MF CMakeFiles/ost_img.dir/data.cc.o.d -o CMakeFiles/ost_img.dir/data.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/data.cc [ 7%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/geom/_ost_geom.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/geom/_ost_geom.so CMakeFiles/_ost_geom.dir/export_vec2.cc.o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o CMakeFiles/_ost_geom.dir/export_vec3.cc.o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o CMakeFiles/_ost_geom.dir/export_vec4.cc.o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o CMakeFiles/_ost_geom.dir/export_mat2.cc.o CMakeFiles/_ost_geom.dir/export_mat3.cc.o CMakeFiles/_ost_geom.dir/export_mat4.cc.o CMakeFiles/_ost_geom.dir/export_composite2.cc.o CMakeFiles/_ost_geom.dir/export_composite3.cc.o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o CMakeFiles/_ost_geom.dir/export_quat.cc.o CMakeFiles/_ost_geom.dir/export_transform.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o -MF CMakeFiles/ost_img.dir/extent_iterator.cc.o.d -o CMakeFiles/ost_img.dir/extent_iterator.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/extent_iterator.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/geom/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/geom/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 7%] Built target _ost_geom make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 7%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o -MF CMakeFiles/_ost_base.dir/wrap_base.cc.o.d -o CMakeFiles/_ost_base.dir/wrap_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/wrap_base.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o -MF CMakeFiles/ost_img.dir/extent_mask.cc.o.d -o CMakeFiles/ost_img.dir/extent_mask.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/extent_mask.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o -MF CMakeFiles/ost_img.dir/extent.cc.o.d -o CMakeFiles/ost_img.dir/extent.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/extent.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o -MF CMakeFiles/ost_img.dir/image_factory.cc.o.d -o CMakeFiles/ost_img.dir/image_factory.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_factory.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o -MF CMakeFiles/ost_mol.dir/chain_base.cc.o.d -o CMakeFiles/ost_mol.dir/chain_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/chain_base.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o -MF CMakeFiles/ost_mol.dir/chain_handle.cc.o.d -o CMakeFiles/ost_mol.dir/chain_handle.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/chain_handle.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o -MF CMakeFiles/ost_mol.dir/chain_view.cc.o.d -o CMakeFiles/ost_mol.dir/chain_view.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/chain_view.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o -MF CMakeFiles/ost_mol.dir/chain_type.cc.o.d -o CMakeFiles/ost_mol.dir/chain_type.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/chain_type.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o -MF CMakeFiles/ost_img.dir/image_handle.cc.o.d -o CMakeFiles/ost_img.dir/image_handle.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_handle.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o -MF CMakeFiles/ost_mol.dir/coord_frame.cc.o.d -o CMakeFiles/ost_mol.dir/coord_frame.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/coord_frame.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/chain_view.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o -MF CMakeFiles/ost_img.dir/image_impl.cc.o.d -o CMakeFiles/ost_img.dir/image_impl.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_impl.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o -MF CMakeFiles/ost_img.dir/image_list.cc.o.d -o CMakeFiles/ost_img.dir/image_list.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_list.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o -MF CMakeFiles/ost_mol.dir/coord_group.cc.o.d -o CMakeFiles/ost_mol.dir/coord_group.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/coord_group.cc [ 10%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o -MF CMakeFiles/_ost_base.dir/export_logger.cc.o.d -o CMakeFiles/_ost_base.dir/export_logger.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/export_logger.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/wrap_base.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o -MF CMakeFiles/ost_mol.dir/editor_base.cc.o.d -o CMakeFiles/ost_mol.dir/editor_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/editor_base.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o -MF CMakeFiles/ost_mol.dir/entity_base.cc.o.d -o CMakeFiles/ost_mol.dir/entity_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/entity_base.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o -MF CMakeFiles/ost_mol.dir/entity_handle.cc.o.d -o CMakeFiles/ost_mol.dir/entity_handle.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/entity_handle.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o -MF CMakeFiles/ost_img.dir/inverted_mask.cc.o.d -o CMakeFiles/ost_img.dir/inverted_mask.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/inverted_mask.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o -MF CMakeFiles/ost_img.dir/map.cc.o.d -o CMakeFiles/ost_img.dir/map.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/map.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o -MF CMakeFiles/ost_img.dir/mask_base.cc.o.d -o CMakeFiles/ost_img.dir/mask_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/mask_base.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o -MF CMakeFiles/ost_mol.dir/entity_observer.cc.o.d -o CMakeFiles/ost_mol.dir/entity_observer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/entity_observer.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -MF CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o.d -o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/entity_property_mapper.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o -MF CMakeFiles/ost_mol.dir/entity_view.cc.o.d -o CMakeFiles/ost_mol.dir/entity_view.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/entity_view.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o -MF CMakeFiles/ost_mol.dir/entity_visitor.cc.o.d -o CMakeFiles/ost_mol.dir/entity_visitor.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/entity_visitor.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/export_logger.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o -MF CMakeFiles/ost_img.dir/mask_op.cc.o.d -o CMakeFiles/ost_img.dir/mask_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/mask_op.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o -MF CMakeFiles/ost_img.dir/mask.cc.o.d -o CMakeFiles/ost_img.dir/mask.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/mask.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o -MF CMakeFiles/ost_mol.dir/ics_editor.cc.o.d -o CMakeFiles/ost_mol.dir/ics_editor.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/ics_editor.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o -MF CMakeFiles/ost_img.dir/observable.cc.o.d -o CMakeFiles/ost_img.dir/observable.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/observable.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/entity_view.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o -MF CMakeFiles/ost_mol.dir/not_connected_error.cc.o.d -o CMakeFiles/ost_mol.dir/not_connected_error.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/not_connected_error.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o -MF CMakeFiles/ost_mol.dir/property_id.cc.o.d -o CMakeFiles/ost_mol.dir/property_id.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/property_id.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o -MF CMakeFiles/ost_img.dir/paste_impl.cc.o.d -o CMakeFiles/ost_img.dir/paste_impl.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/paste_impl.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o -MF CMakeFiles/ost_img.dir/peak.cc.o.d -o CMakeFiles/ost_img.dir/peak.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/peak.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o -MF CMakeFiles/ost_img.dir/phase.cc.o.d -o CMakeFiles/ost_img.dir/phase.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/phase.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o -MF CMakeFiles/ost_mol.dir/query.cc.o.d -o CMakeFiles/ost_mol.dir/query.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/query.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o -MF CMakeFiles/ost_mol.dir/query_error.cc.o.d -o CMakeFiles/ost_mol.dir/query_error.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/query_error.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o -MF CMakeFiles/ost_mol.dir/query_state.cc.o.d -o CMakeFiles/ost_mol.dir/query_state.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/query_state.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o -MF CMakeFiles/ost_mol.dir/residue_base.cc.o.d -o CMakeFiles/ost_mol.dir/residue_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/residue_base.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o -MF CMakeFiles/ost_img.dir/physical_units.cc.o.d -o CMakeFiles/ost_img.dir/physical_units.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/physical_units.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o -MF CMakeFiles/ost_mol.dir/residue_handle.cc.o.d -o CMakeFiles/ost_mol.dir/residue_handle.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/residue_handle.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o -MF CMakeFiles/ost_img.dir/pixel_sampling.cc.o.d -o CMakeFiles/ost_img.dir/pixel_sampling.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/pixel_sampling.cc [ 12%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o -MF CMakeFiles/_ost_base.dir/export_range.cc.o.d -o CMakeFiles/_ost_base.dir/export_range.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/export_range.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o -MF CMakeFiles/ost_img.dir/point_list.cc.o.d -o CMakeFiles/ost_img.dir/point_list.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/point_list.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o -MF CMakeFiles/ost_mol.dir/residue_view.cc.o.d -o CMakeFiles/ost_mol.dir/residue_view.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/residue_view.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o -MF CMakeFiles/ost_img.dir/point.cc.o.d -o CMakeFiles/ost_img.dir/point.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/point.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/residue_view.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o -MF CMakeFiles/ost_mol.dir/surface_builder.cc.o.d -o CMakeFiles/ost_mol.dir/surface_builder.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/surface_builder.cc [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o -MF CMakeFiles/ost_img.dir/polygon_mask.cc.o.d -o CMakeFiles/ost_img.dir/polygon_mask.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/polygon_mask.cc [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o -MF CMakeFiles/ost_mol.dir/surface_handle.cc.o.d -o CMakeFiles/ost_mol.dir/surface_handle.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/surface_handle.cc [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o -MF CMakeFiles/ost_img.dir/progress.cc.o.d -o CMakeFiles/ost_img.dir/progress.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/progress.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/export_range.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -MF CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o.d -o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/transfer_connectivity.cc /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o -MF CMakeFiles/ost_img.dir/size.cc.o.d -o CMakeFiles/ost_img.dir/size.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/size.cc [ 15%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o -MF CMakeFiles/ost_img.dir/spherical_mask.cc.o.d -o CMakeFiles/ost_img.dir/spherical_mask.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/spherical_mask.cc [ 15%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o -MF CMakeFiles/_ost_base.dir/export_units.cc.o.d -o CMakeFiles/_ost_base.dir/export_units.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/export_units.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o -MF CMakeFiles/ost_mol.dir/torsion_handle.cc.o.d -o CMakeFiles/ost_mol.dir/torsion_handle.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/torsion_handle.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o -MF CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o.d -o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/query_view_wrapper.cc [ 15%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o -MF CMakeFiles/ost_img.dir/mask_info_convert.cc.o.d -o CMakeFiles/ost_img.dir/mask_info_convert.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/mask_info_convert.cc [ 15%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o -MF CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o.d -o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state_factory.cc [ 15%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o -MF CMakeFiles/ost_img.dir/image_state/index.cc.o.d -o CMakeFiles/ost_img.dir/image_state/index.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/index.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/view_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/view_op.cc.o -MF CMakeFiles/ost_mol.dir/view_op.cc.o.d -o CMakeFiles/ost_mol.dir/view_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/view_op.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o -MF CMakeFiles/ost_mol.dir/coord_source.cc.o.d -o CMakeFiles/ost_mol.dir/coord_source.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/coord_source.cc [ 15%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -MF CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o.d -o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/image_state/image_state_base.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/export_units.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o -MF CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o.d -o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/in_mem_coord_source.cc [ 15%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -MF CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o.d -o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/src/raster_image/raster_image.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o -MF CMakeFiles/ost_mol.dir/bounding_box.cc.o.d -o CMakeFiles/ost_mol.dir/bounding_box.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/bounding_box.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/xcs_editor.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/xcs_editor.cc.o -MF CMakeFiles/ost_mol.dir/xcs_editor.cc.o.d -o CMakeFiles/ost_mol.dir/xcs_editor.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/xcs_editor.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/atom_impl.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/log_sink.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/log.hh:25, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/atom_impl.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/chain_impl.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/connector_impl.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/dihedral.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/dihedral.cc.o -MF CMakeFiles/ost_mol.dir/impl/dihedral.cc.o.d -o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/dihedral.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/entity_impl.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/log_sink.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/log.hh:25, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/chain_impl.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/fragment_impl.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -MF CMakeFiles/ost_mol.dir/impl/query_ast.cc.o.d -o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/query_ast.cc [ 16%] Linking CXX shared library ../../../../stage/lib/libost_img.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_img.so.2.3 -o ../../../../stage/lib/libost_img.so.2.3.1 CMakeFiles/ost_img.dir/circle_mask.cc.o CMakeFiles/ost_img.dir/composite_mask.cc.o CMakeFiles/ost_img.dir/data_algorithm.cc.o CMakeFiles/ost_img.dir/data_observer.cc.o CMakeFiles/ost_img.dir/data.cc.o CMakeFiles/ost_img.dir/extent_iterator.cc.o CMakeFiles/ost_img.dir/extent_mask.cc.o CMakeFiles/ost_img.dir/extent.cc.o CMakeFiles/ost_img.dir/image_factory.cc.o CMakeFiles/ost_img.dir/image_handle.cc.o CMakeFiles/ost_img.dir/image_impl.cc.o CMakeFiles/ost_img.dir/image_list.cc.o CMakeFiles/ost_img.dir/inverted_mask.cc.o CMakeFiles/ost_img.dir/map.cc.o CMakeFiles/ost_img.dir/mask_base.cc.o CMakeFiles/ost_img.dir/mask_op.cc.o CMakeFiles/ost_img.dir/mask.cc.o CMakeFiles/ost_img.dir/observable.cc.o CMakeFiles/ost_img.dir/paste_impl.cc.o CMakeFiles/ost_img.dir/peak.cc.o CMakeFiles/ost_img.dir/phase.cc.o CMakeFiles/ost_img.dir/physical_units.cc.o CMakeFiles/ost_img.dir/pixel_sampling.cc.o CMakeFiles/ost_img.dir/point_list.cc.o CMakeFiles/ost_img.dir/point.cc.o CMakeFiles/ost_img.dir/polygon_mask.cc.o CMakeFiles/ost_img.dir/progress.cc.o CMakeFiles/ost_img.dir/size.cc.o CMakeFiles/ost_img.dir/spherical_mask.cc.o CMakeFiles/ost_img.dir/mask_info_convert.cc.o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o CMakeFiles/ost_img.dir/image_state/index.cc.o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.3.1 ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 16%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/_ost_base.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_base.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/_ost_base.so CMakeFiles/_ost_base.dir/wrap_base.cc.o CMakeFiles/_ost_base.dir/export_logger.cc.o CMakeFiles/_ost_base.dir/export_range.cc.o CMakeFiles/_ost_base.dir/export_units.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_base.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img.so.2.3.1 ../../../../stage/lib/libost_img.so.2.3 ../../../../stage/lib/libost_img.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 16%] Built target ost_img make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -MF CMakeFiles/ost_img_alg.dir/anisotropic.cc.o.d -o CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/anisotropic.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/query_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/query_impl.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/residue_impl.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/settings.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./settings.pyc\",\"settings.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/stutil.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./stutil.pyc\",\"stutil.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/table.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./table.pyc\",\"table.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/table_selector.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./table_selector.pyc\",\"table_selector.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/xmlrunner.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./xmlrunner.pyc\",\"xmlrunner.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/base/pymod/testutils.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./testutils.pyc\",\"testutils.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 16%] Built target _ost_base make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 16%] Building CXX object modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_info_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o -MF CMakeFiles/_ost_info.dir/wrap_info.cc.o.d -o CMakeFiles/_ost_info.dir/wrap_info.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/pymod/wrap_info.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/surface_impl.cc [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/auto_correlate.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/torsion_impl.cc [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o -MF CMakeFiles/ost_img_alg.dir/convolute.cc.o.d -o CMakeFiles/ost_img_alg.dir/convolute.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/convolute.cc [ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -MF CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o.d -o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/atom_prop.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/log_sink.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/log.hh:25, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/src/impl/residue_impl.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/correlate.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/correlate.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/cross_correlate.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o -MF CMakeFiles/ost_img_alg.dir/density_slice.cc.o.d -o CMakeFiles/ost_img_alg.dir/density_slice.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/density_slice.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o -MF CMakeFiles/ost_img_alg.dir/dft.cc.o.d -o CMakeFiles/ost_img_alg.dir/dft.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/dft.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/pymod/wrap_info.cc:27: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o -MF CMakeFiles/ost_img_alg.dir/fft.cc.o.d -o CMakeFiles/ost_img_alg.dir/fft.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/fft.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o -MF CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o.d -o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/fourier_filters.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/gaussian.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/gaussian_gradient_magnitude.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/gaussian_laplacian.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -MF CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o.d -o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/highest_peak_search_3d.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o -MF CMakeFiles/ost_img_alg.dir/histogram.cc.o.d -o CMakeFiles/ost_img_alg.dir/histogram.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/histogram.cc [ 19%] Linking CXX shared library ../../../../stage/lib/libost_mol.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_mol.so.2.3 -o ../../../../stage/lib/libost_mol.so.2.3.1 CMakeFiles/ost_mol.dir/atom_base.cc.o CMakeFiles/ost_mol.dir/atom_handle.cc.o CMakeFiles/ost_mol.dir/atom_view.cc.o CMakeFiles/ost_mol.dir/bond_handle.cc.o CMakeFiles/ost_mol.dir/chain_base.cc.o CMakeFiles/ost_mol.dir/chain_handle.cc.o CMakeFiles/ost_mol.dir/chain_view.cc.o CMakeFiles/ost_mol.dir/chain_type.cc.o CMakeFiles/ost_mol.dir/coord_frame.cc.o CMakeFiles/ost_mol.dir/coord_group.cc.o CMakeFiles/ost_mol.dir/editor_base.cc.o CMakeFiles/ost_mol.dir/entity_base.cc.o CMakeFiles/ost_mol.dir/entity_handle.cc.o CMakeFiles/ost_mol.dir/entity_observer.cc.o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o CMakeFiles/ost_mol.dir/entity_view.cc.o CMakeFiles/ost_mol.dir/entity_visitor.cc.o CMakeFiles/ost_mol.dir/ics_editor.cc.o CMakeFiles/ost_mol.dir/not_connected_error.cc.o CMakeFiles/ost_mol.dir/property_id.cc.o CMakeFiles/ost_mol.dir/query.cc.o CMakeFiles/ost_mol.dir/query_error.cc.o CMakeFiles/ost_mol.dir/query_state.cc.o CMakeFiles/ost_mol.dir/residue_base.cc.o CMakeFiles/ost_mol.dir/residue_handle.cc.o CMakeFiles/ost_mol.dir/residue_view.cc.o CMakeFiles/ost_mol.dir/surface_builder.cc.o CMakeFiles/ost_mol.dir/surface_handle.cc.o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o CMakeFiles/ost_mol.dir/torsion_handle.cc.o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o CMakeFiles/ost_mol.dir/view_op.cc.o CMakeFiles/ost_mol.dir/coord_source.cc.o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o CMakeFiles/ost_mol.dir/bounding_box.cc.o CMakeFiles/ost_mol.dir/xcs_editor.cc.o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.3.1 ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -MF CMakeFiles/ost_img_alg.dir/line_iterator.cc.o.d -o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/line_iterator.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -MF CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o.d -o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/local_sigma_threshold.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol.so.2.3.1 ../../../../stage/lib/libost_mol.so.2.3 ../../../../stage/lib/libost_mol.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 20%] Built target ost_mol make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 20%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -MF CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o.d -o CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/impl/sequence_impl.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/mask_image.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/mask_image.cc.o -MF CMakeFiles/ost_img_alg.dir/mask_image.cc.o.d -o CMakeFiles/ost_img_alg.dir/mask_image.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/mask_image.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o -MF CMakeFiles/ost_img_alg.dir/normalizer.cc.o.d -o CMakeFiles/ost_img_alg.dir/normalizer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/normalizer.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -MF CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o.d -o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/normalizer_factory.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_linear.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/norm_linear.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_log.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_log.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/norm_log.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_od.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_od.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/norm_od.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -MF CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o.d -o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/power_spectrum.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/randomize.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/randomize.cc.o -MF CMakeFiles/ost_img_alg.dir/randomize.cc.o.d -o CMakeFiles/ost_img_alg.dir/randomize.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/randomize.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -MF CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o.d -o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/smooth_mask_image.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o -MF CMakeFiles/ost_img_alg.dir/stat.cc.o.d -o CMakeFiles/ost_img_alg.dir/stat.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/stat.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -MF CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o.d -o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/stat_min_max.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_transform.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_transform.cc.o -MF CMakeFiles/ost_img_alg.dir/alg_transform.cc.o.d -o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/alg_transform.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o -MF CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o.d -o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/alg_mirror.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_shift.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_shift.cc.o -MF CMakeFiles/ost_img_alg.dir/alg_shift.cc.o.d -o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/alg_shift.cc [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -MF CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o.d -o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/impl/sequence_list_impl.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o -MF CMakeFiles/ost_img_alg.dir/threshold.cc.o.d -o CMakeFiles/ost_img_alg.dir/threshold.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/threshold.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -MF CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o.d -o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/discrete_shrink.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -MF CMakeFiles/ost_img_alg.dir/transformation_base.cc.o.d -o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/transformation_base.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformations.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformations.cc.o -MF CMakeFiles/ost_img_alg.dir/transformations.cc.o.d -o CMakeFiles/ost_img_alg.dir/transformations.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/transformations.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -MF CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o.d -o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/fractional_shift.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o -MF CMakeFiles/ost_img_alg.dir/polar.cc.o.d -o CMakeFiles/ost_img_alg.dir/polar.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/polar.cc [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -MF CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o.d -o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/rscrosscorr.cc [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o -MF CMakeFiles/ost_img_alg.dir/line_average.cc.o.d -o CMakeFiles/ost_img_alg.dir/line_average.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/src/line_average.cc [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o -MF CMakeFiles/ost_seq.dir/sequence_handle.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_handle.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/sequence_handle.cc [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o -MF CMakeFiles/ost_seq.dir/aligned_region.cc.o.d -o CMakeFiles/ost_seq.dir/aligned_region.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/aligned_region.cc [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o -MF CMakeFiles/ost_seq.dir/aligned_column.cc.o.d -o CMakeFiles/ost_seq.dir/aligned_column.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/aligned_column.cc [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o -MF CMakeFiles/ost_seq.dir/sequence_list.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_list.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/sequence_list.cc [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o -MF CMakeFiles/ost_seq.dir/alignment_handle.cc.o.d -o CMakeFiles/ost_seq.dir/alignment_handle.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/alignment_handle.cc [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o -MF CMakeFiles/ost_seq.dir/sequence_op.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/sequence_op.cc [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -MF CMakeFiles/ost_seq.dir/views_from_sequences.cc.o.d -o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/views_from_sequences.cc [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o -MF CMakeFiles/ost_seq.dir/profile_handle.cc.o.d -o CMakeFiles/ost_seq.dir/profile_handle.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/profile_handle.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/src/sequence_op.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 23%] Linking CXX shared library ../../../../stage/lib/libost_img_alg.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_img_alg.so.2.3 -o ../../../../stage/lib/libost_img_alg.so.2.3.1 CMakeFiles/ost_img_alg.dir/anisotropic.cc.o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o CMakeFiles/ost_img_alg.dir/convolute.cc.o CMakeFiles/ost_img_alg.dir/correlate.cc.o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o CMakeFiles/ost_img_alg.dir/density_slice.cc.o CMakeFiles/ost_img_alg.dir/dft.cc.o CMakeFiles/ost_img_alg.dir/fft.cc.o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o CMakeFiles/ost_img_alg.dir/gaussian.cc.o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o CMakeFiles/ost_img_alg.dir/histogram.cc.o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o CMakeFiles/ost_img_alg.dir/mask_image.cc.o CMakeFiles/ost_img_alg.dir/normalizer.cc.o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o CMakeFiles/ost_img_alg.dir/norm_log.cc.o CMakeFiles/ost_img_alg.dir/norm_od.cc.o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o CMakeFiles/ost_img_alg.dir/randomize.cc.o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o CMakeFiles/ost_img_alg.dir/stat.cc.o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o CMakeFiles/ost_img_alg.dir/threshold.cc.o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o CMakeFiles/ost_img_alg.dir/transformations.cc.o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o CMakeFiles/ost_img_alg.dir/polar.cc.o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o CMakeFiles/ost_img_alg.dir/line_average.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.3.1 ../../../../stage/lib/libost_info.so.2.3.1 ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img_alg.so.2.3.1 ../../../../stage/lib/libost_img_alg.so.2.3 ../../../../stage/lib/libost_img_alg.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 23%] Built target ost_img_alg [ 24%] Linking CXX shared library ../../../../stage/lib/libost_seq.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_seq.so.2.3 -o ../../../../stage/lib/libost_seq.so.2.3.1 CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o CMakeFiles/ost_seq.dir/sequence_handle.cc.o CMakeFiles/ost_seq.dir/aligned_region.cc.o CMakeFiles/ost_seq.dir/aligned_column.cc.o CMakeFiles/ost_seq.dir/sequence_list.cc.o CMakeFiles/ost_seq.dir/alignment_handle.cc.o CMakeFiles/ost_seq.dir/sequence_op.cc.o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o CMakeFiles/ost_seq.dir/profile_handle.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_mol.so.2.3.1 ../../../../stage/lib/libost_info.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq.so.2.3.1 ../../../../stage/lib/libost_seq.so.2.3 ../../../../stage/lib/libost_seq.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 24%] Built target ost_seq make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake --color= make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 24%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -MF CMakeFiles/ost_db.dir/sqlite_wrap.cc.o.d -o CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/src/sqlite_wrap.cc make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -MF CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o.d -o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/contact_prediction_score.cc [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/contact_weight_matrix.cc [ 24%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o -MF CMakeFiles/ost_db.dir/binary_container.cc.o.d -o CMakeFiles/ost_db.dir/binary_container.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/src/binary_container.cc [ 24%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o -MF CMakeFiles/ost_db.dir/extract_data_helper.cc.o.d -o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/src/extract_data_helper.cc [ 24%] Building CXX object modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o [ 24%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o -MF CMakeFiles/ost_seq_alg.dir/conservation.cc.o.d -o CMakeFiles/ost_seq_alg.dir/conservation.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/conservation.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/c++ -DOST_MODULE_OST_BINDINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_bindings_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -MF CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o.d -o CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/src/wrap_tmalign.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o -MF CMakeFiles/ost_db.dir/linear_indexer.cc.o.d -o CMakeFiles/ost_db.dir/linear_indexer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/src/linear_indexer.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -MF CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o.d -o CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/clip_alignment.cc [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/distance_map.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/distance_map.cc.o -MF CMakeFiles/ost_seq_alg.dir/distance_map.cc.o.d -o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/distance_map.cc [ 24%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/info/_ost_info.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/info/_ost_info.so CMakeFiles/_ost_info.dir/wrap_info.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_info.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/info/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/info/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/info/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 24%] Built target _ost_info make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake --color= make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build [ 24%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o -MF CMakeFiles/_ost_mol.dir/export_atom.cc.o.d -o CMakeFiles/_ost_mol.dir/export_atom.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_atom.cc make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 24%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o -MF CMakeFiles/_ost_img.dir/export_data.cc.o.d -o CMakeFiles/_ost_img.dir/export_data.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_data.cc [ 24%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_atom_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_atom_view.cc [ 24%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o -MF CMakeFiles/_ost_mol.dir/export_bond.cc.o.d -o CMakeFiles/_ost_mol.dir/export_bond.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_bond.cc [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o -MF CMakeFiles/ost_seq_alg.dir/entropy.cc.o.d -o CMakeFiles/ost_seq_alg.dir/entropy.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/entropy.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_data.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o -MF CMakeFiles/_ost_mol.dir/export_chain.cc.o.d -o CMakeFiles/_ost_mol.dir/export_chain.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_chain.cc [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/global_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/global_align.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/global_align.cc [ 24%] Linking CXX shared library ../../../stage/lib/libost_db.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_db.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_db.so.2.3 -o ../../../stage/lib/libost_db.so.2.3.1 CMakeFiles/ost_db.dir/sqlite_wrap.cc.o CMakeFiles/ost_db.dir/linear_indexer.cc.o CMakeFiles/ost_db.dir/binary_container.cc.o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/ins_del.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/ins_del.cc.o -MF CMakeFiles/ost_seq_alg.dir/ins_del.cc.o.d -o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/ins_del.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_db.so.2.3.1 ../../../stage/lib/libost_db.so.2.3 ../../../stage/lib/libost_db.so [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/local_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/local_align.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/local_align.cc make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 24%] Built target ost_db [ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -MF CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o.d -o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/merge_pairwise_alignments.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_bond.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_atom_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_atom.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/pair_subst_weight_matrix.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_chain.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -MF CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o.d -o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_data_algorithm.cc [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/semiglobal_align.cc [ 25%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o -MF CMakeFiles/_ost_img.dir/export_extent.cc.o.d -o CMakeFiles/_ost_img.dir/export_extent.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_extent.cc [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -MF CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o.d -o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/sequence_identity.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_data_algorithm.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Linking CXX shared library ../../../stage/lib/libost_bindings.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_bindings.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_bindings.so.2.3 -o ../../../stage/lib/libost_bindings.so.2.3.1 CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_seq.so.2.3.1 ../../../stage/lib/libost_mol.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o -MF CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o.d -o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/sequence_similarity.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_bindings.so.2.3.1 ../../../stage/lib/libost_bindings.so.2.3 ../../../stage/lib/libost_bindings.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 25%] Built target ost_bindings make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 25%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o -MF CMakeFiles/ost_conop.dir/processor.cc.o.d -o CMakeFiles/ost_conop.dir/processor.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/processor.cc [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/subst_weight_matrix.cc [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -MF CMakeFiles/ost_seq_alg.dir/variance_map.cc.o.d -o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/variance_map.cc [ 25%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o -MF CMakeFiles/_ost_img.dir/export_image_handle.cc.o.d -o CMakeFiles/_ost_img.dir/export_image_handle.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_image_handle.cc [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -MF CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o.d -o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/hmm_pseudo_counts.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_extent.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -MF CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o.d -o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/src/hmm_score.cc [ 25%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_chain_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_chain_view.cc [ 26%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o -MF CMakeFiles/_ost_img.dir/export_peak.cc.o.d -o CMakeFiles/_ost_img.dir/export_peak.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_peak.cc [ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o -MF CMakeFiles/ost_conop.dir/amino_acids.cc.o.d -o CMakeFiles/ost_conop.dir/amino_acids.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/amino_acids.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_chain_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -MF CMakeFiles/_ost_mol.dir/export_coord_group.cc.o.d -o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_coord_group.cc [ 26%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o -MF CMakeFiles/_ost_img.dir/export_phase.cc.o.d -o CMakeFiles/_ost_img.dir/export_phase.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_phase.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_image_handle.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/conop.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/conop.cc.o -MF CMakeFiles/ost_conop.dir/conop.cc.o.d -o CMakeFiles/ost_conop.dir/conop.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/conop.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_peak.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -MF CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o.d -o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_coord_frame.cc [ 26%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o -MF CMakeFiles/_ost_img.dir/export_point.cc.o.d -o CMakeFiles/_ost_img.dir/export_point.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_point.cc [ 26%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o -MF CMakeFiles/_ost_img.dir/export_progress.cc.o.d -o CMakeFiles/_ost_img.dir/export_progress.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_progress.cc [ 26%] Linking CXX shared library ../../../../stage/lib/libost_seq_alg.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_seq_alg.so.2.3 -o ../../../../stage/lib/libost_seq_alg.so.2.3.1 CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o CMakeFiles/ost_seq_alg.dir/conservation.cc.o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o CMakeFiles/ost_seq_alg.dir/entropy.cc.o CMakeFiles/ost_seq_alg.dir/global_align.cc.o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o CMakeFiles/ost_seq_alg.dir/local_align.cc.o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.3.1 ../../../../stage/lib/libost_info.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq_alg.so.2.3.1 ../../../../stage/lib/libost_seq_alg.so.2.3 ../../../../stage/lib/libost_seq_alg.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 26%] Built target ost_seq_alg [ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o -MF CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o.d -o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/minimal_compound_lib.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_coord_frame.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_phase.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_coord_group.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_point.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib_base.cc.o -MF CMakeFiles/ost_conop.dir/compound_lib_base.cc.o.d -o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/compound_lib_base.cc [ 26%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o -MF CMakeFiles/_ost_img.dir/export_raster_image.cc.o.d -o CMakeFiles/_ost_img.dir/export_raster_image.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_raster_image.cc [ 26%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o -MF CMakeFiles/_ost_img.dir/export_size.cc.o.d -o CMakeFiles/_ost_img.dir/export_size.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_size.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_progress.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o -MF CMakeFiles/_ost_mol.dir/export_editors.cc.o.d -o CMakeFiles/_ost_mol.dir/export_editors.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_editors.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_raster_image.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/heuristic.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/heuristic.cc.o -MF CMakeFiles/ost_conop.dir/heuristic.cc.o.d -o CMakeFiles/ost_conop.dir/heuristic.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/heuristic.cc [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_entity.cc [ 28%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o -MF CMakeFiles/_ost_img.dir/export_mask.cc.o.d -o CMakeFiles/_ost_img.dir/export_mask.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_mask.cc [ 28%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/diag.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/diag.cc.o -MF CMakeFiles/ost_conop.dir/diag.cc.o.d -o CMakeFiles/ost_conop.dir/diag.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/diag.cc [ 28%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o -MF CMakeFiles/_ost_img.dir/export_image_list.cc.o.d -o CMakeFiles/_ost_img.dir/export_image_list.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_image_list.cc [ 28%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o -MF CMakeFiles/_ost_img.dir/export_map.cc.o.d -o CMakeFiles/_ost_img.dir/export_map.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_map.cc [ 28%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o -MF CMakeFiles/ost_conop.dir/rule_based.cc.o.d -o CMakeFiles/ost_conop.dir/rule_based.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/rule_based.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_editors.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_size.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o -MF CMakeFiles/ost_conop.dir/model_check.cc.o.d -o CMakeFiles/ost_conop.dir/model_check.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/model_check.cc [ 29%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o -MF CMakeFiles/ost_conop.dir/compound.cc.o.d -o CMakeFiles/ost_conop.dir/compound.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/compound.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_entity.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_mask.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib.cc.o -MF CMakeFiles/ost_conop.dir/compound_lib.cc.o.d -o CMakeFiles/ost_conop.dir/compound_lib.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/compound_lib.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_map.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/export_image_list.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o -MF CMakeFiles/_ost_img.dir/wrap_img.cc.o.d -o CMakeFiles/_ost_img.dir/wrap_img.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/wrap_img.cc [ 29%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o -MF CMakeFiles/ost_conop.dir/ring_finder.cc.o.d -o CMakeFiles/ost_conop.dir/ring_finder.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/ring_finder.cc [ 29%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_entity_view.cc [ 29%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o -MF CMakeFiles/_ost_mol.dir/export_property_id.cc.o.d -o CMakeFiles/_ost_mol.dir/export_property_id.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_property_id.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/wrap_img.cc:27: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o -MF CMakeFiles/_ost_mol.dir/export_query.cc.o.d -o CMakeFiles/_ost_mol.dir/export_query.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_query.cc [ 29%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o -MF CMakeFiles/_ost_mol.dir/export_residue.cc.o.d -o CMakeFiles/_ost_mol.dir/export_residue.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_residue.cc [ 29%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_residue_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_residue_view.cc [ 29%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o -MF CMakeFiles/_ost_mol.dir/export_surface.cc.o.d -o CMakeFiles/_ost_mol.dir/export_surface.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_surface.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_entity_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_property_id.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Linking CXX shared module ../../../../stage/lib/python3.10/dist-packages/ost/img/_ost_img.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.10/dist-packages/ost/img/_ost_img.so CMakeFiles/_ost_img.dir/export_data.cc.o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o CMakeFiles/_ost_img.dir/export_extent.cc.o CMakeFiles/_ost_img.dir/export_image_handle.cc.o CMakeFiles/_ost_img.dir/export_peak.cc.o CMakeFiles/_ost_img.dir/export_phase.cc.o CMakeFiles/_ost_img.dir/export_point.cc.o CMakeFiles/_ost_img.dir/export_progress.cc.o CMakeFiles/_ost_img.dir/export_raster_image.cc.o CMakeFiles/_ost_img.dir/export_size.cc.o CMakeFiles/_ost_img.dir/export_mask.cc.o CMakeFiles/_ost_img.dir/export_image_list.cc.o CMakeFiles/_ost_img.dir/export_map.cc.o CMakeFiles/_ost_img.dir/wrap_img.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_img.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../../stage/lib/libost_info.so.2.3.1 ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_query.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/base/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/img/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 29%] Built target _ost_img make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 30%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -MF CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o.d -o CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/pymod/wrap_alg.cc [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -MF CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o.d -o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_bounding_box.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_residue.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_residue_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_surface.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -MF CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o.d -o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_query_view_wrapper.cc [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o -MF CMakeFiles/_ost_mol.dir/export_torsion.cc.o.d -o CMakeFiles/_ost_mol.dir/export_torsion.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_torsion.cc [ 30%] Linking CXX shared library ../../../stage/lib/libost_conop.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_conop.so.2.3 -o ../../../stage/lib/libost_conop.so.2.3.1 CMakeFiles/ost_conop.dir/processor.cc.o CMakeFiles/ost_conop.dir/amino_acids.cc.o CMakeFiles/ost_conop.dir/conop.cc.o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o CMakeFiles/ost_conop.dir/heuristic.cc.o CMakeFiles/ost_conop.dir/diag.cc.o CMakeFiles/ost_conop.dir/rule_based.cc.o CMakeFiles/ost_conop.dir/model_check.cc.o CMakeFiles/ost_conop.dir/compound.cc.o CMakeFiles/ost_conop.dir/compound_lib.cc.o CMakeFiles/ost_conop.dir/ring_finder.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_db.so.2.3.1 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.3.1 ../../../stage/lib/libost_mol.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_conop.so.2.3.1 ../../../stage/lib/libost_conop.so.2.3 ../../../stage/lib/libost_conop.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 30%] Built target ost_conop make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o -MF CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o.d -o CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/svd_superpose.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/svd_superpose.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/pymod/wrap_alg.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_bounding_box.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_query_view_wrapper.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_torsion.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o -MF CMakeFiles/_ost_mol.dir/export_visitor.cc.o.d -o CMakeFiles/_ost_mol.dir/export_visitor.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_visitor.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -MF CMakeFiles/_ost_mol.dir/wrap_mol.cc.o.d -o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/wrap_mol.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_entity_property_mapper.cc [ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -MF CMakeFiles/ost_mol_alg.dir/clash_score.cc.o.d -o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/clash_score.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_visitor.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/bitmap_io.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/bitmap_io.cc.o -MF CMakeFiles/ost_gfx.dir/bitmap_io.cc.o.d -o CMakeFiles/ost_gfx.dir/bitmap_io.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/bitmap_io.cc [ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o -MF CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o.d -o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/sec_structure_segments.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/export_entity_property_mapper.cc:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/wrap_mol.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -MF CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o.d -o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/local_dist_diff_test.cc [ 32%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_filter.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/pymod/export_filter.cc [ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -MF CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o.d -o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/distance_test_common.cc [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/exporter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/exporter.cc.o -MF CMakeFiles/ost_gfx.dir/exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/exporter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/exporter.cc [ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -MF CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o.d -o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/distance_rmsd_test.cc [ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -MF CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o.d -o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/superpose_frames.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -MF CMakeFiles/ost_gfx.dir/collada_exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/collada_exporter.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o -MF CMakeFiles/ost_gfx.dir/color.cc.o.d -o CMakeFiles/ost_gfx.dir/color.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/pymod/export_filter.cc:27: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o -MF CMakeFiles/ost_gfx.dir/primitives.cc.o.d -o CMakeFiles/ost_gfx.dir/primitives.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/primitives.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o -MF CMakeFiles/ost_gfx.dir/entity.cc.o.d -o CMakeFiles/ost_gfx.dir/entity.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/entity.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o -MF CMakeFiles/ost_gfx.dir/symmetry_node.cc.o.d -o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/symmetry_node.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_node.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_node.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/gfx_node.cc [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -MF CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o.d -o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/filter_clashes.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/gfx_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -MF CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o.d -o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/construct_cbeta.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_object.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_object.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/gfx_object.cc [ 33%] Linking CXX shared module ../../../../stage/lib/python3.10/dist-packages/ost/mol/_ost_mol.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.10/dist-packages/ost/mol/_ost_mol.so CMakeFiles/_ost_mol.dir/export_atom.cc.o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o CMakeFiles/_ost_mol.dir/export_bond.cc.o CMakeFiles/_ost_mol.dir/export_chain.cc.o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o CMakeFiles/_ost_mol.dir/export_editors.cc.o CMakeFiles/_ost_mol.dir/export_entity.cc.o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o CMakeFiles/_ost_mol.dir/export_property_id.cc.o CMakeFiles/_ost_mol.dir/export_query.cc.o CMakeFiles/_ost_mol.dir/export_residue.cc.o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o CMakeFiles/_ost_mol.dir/export_surface.cc.o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o CMakeFiles/_ost_mol.dir/export_torsion.cc.o CMakeFiles/_ost_mol.dir/export_visitor.cc.o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../../stage/lib/libost_info.so.2.3.1 ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -MF CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o.d -o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/trajectory_analysis.cc [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -MF CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o.d -o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/structure_analysis.cc [ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_prim.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/gfx_prim.cc [ 34%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/pymod/export_normalizer.cc [ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/gfx_test_object.cc [ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o -MF CMakeFiles/ost_gfx.dir/input.cc.o.d -o CMakeFiles/ost_gfx.dir/input.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/input.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/base/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 34%] Built target _ost_mol [ 34%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o [ 34%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/pymod/export_transcendentals.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_polar.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/pymod/export_polar.cc [ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o -MF CMakeFiles/ost_gfx.dir/prim_list.cc.o.d -o CMakeFiles/ost_gfx.dir/prim_list.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/prim_list.cc [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -MF CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o.d -o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/consistency_checks.cc [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -MF CMakeFiles/ost_mol_alg.dir/pdbize.cc.o.d -o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/pdbize.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o -MF CMakeFiles/ost_gfx.dir/scene.cc.o.d -o CMakeFiles/ost_gfx.dir/scene.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/scene.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -MF CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o.d -o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/adjacency_bitmap.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/pymod/export_normalizer.cc:27: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/pymod/export_polar.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o -MF CMakeFiles/ost_gfx.dir/selection.cc.o.d -o CMakeFiles/ost_gfx.dir/selection.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/selection.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/pymod/export_transcendentals.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -MF CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o.d -o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/contact_overlap.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -MF CMakeFiles/ost_mol_alg.dir/domain_find.cc.o.d -o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/domain_find.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/scene.cc:33: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -MF CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o.d -o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/similarity_matrix.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o -MF CMakeFiles/ost_gfx.dir/surface.cc.o.d -o CMakeFiles/ost_gfx.dir/surface.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/surface.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o -MF CMakeFiles/ost_gfx.dir/gradient.cc.o.d -o CMakeFiles/ost_gfx.dir/gradient.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/gradient.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -MF CMakeFiles/ost_gfx.dir/gradient_manager.cc.o.d -o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/gradient_manager.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -MF CMakeFiles/ost_mol_alg.dir/accessibility.cc.o.d -o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/accessibility.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o -MF CMakeFiles/ost_gfx.dir/vertex_array.cc.o.d -o CMakeFiles/ost_gfx.dir/vertex_array.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/vertex_array.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -MF CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o.d -o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/sec_struct.cc [ 35%] Linking CXX shared module ../../../../stage/lib/python3.10/dist-packages/ost/img/alg/_ost_img_alg.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.10/dist-packages/ost/img/alg/_ost_img_alg.so CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_img_alg.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.3.1 ../../../../stage/lib/libost_info.so.2.3.1 ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/img/alg/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/img/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 35%] Built target _ost_img_alg make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 35%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o -MF CMakeFiles/_ost_seq.dir/export_sequence.cc.o.d -o CMakeFiles/_ost_seq.dir/export_sequence.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/pymod/export_sequence.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -MF CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o.d -o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/vertex_array_helper.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -MF CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o.d -o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/nonstandard.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o -MF CMakeFiles/ost_mol_alg.dir/molck.cc.o.d -o CMakeFiles/ost_mol_alg.dir/molck.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/molck.cc [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o -MF CMakeFiles/ost_gfx.dir/material.cc.o.d -o CMakeFiles/ost_gfx.dir/material.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/material.cc /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/vertex_array.cc:1311:8: warning: ‘geom::Vec3 ost::gfx::{anonymous}::make_aaline_edge(const geom::Vec2&, const geom::Vec2&, float)’ defined but not used [-Wunused-function] 1311 | Vec3 make_aaline_edge(const Vec2& c1, const Vec2& c0, float s) | ^~~~~~~~~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/vertex_array.cc:1239:8: warning: ‘void ost::gfx::{anonymous}::render_aalines(ost::gfx::{anonymous}::AALineList&, float, float)’ defined but not used [-Wunused-function] 1239 | void render_aalines(AALineList& line_list, float w, float r) | ^~~~~~~~~~~~~~ [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -MF CMakeFiles/ost_gfx.dir/gost_exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/gost_exporter.cc [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o -MF CMakeFiles/ost_gfx.dir/povray.cc.o.d -o CMakeFiles/ost_gfx.dir/povray.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/povray.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -MF CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o.d -o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/find_membrane.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -MF CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o.d -o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/entity_to_density.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/pymod/export_sequence.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o -MF CMakeFiles/ost_gfx.dir/texture.cc.o.d -o CMakeFiles/ost_gfx.dir/texture.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/texture.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/color_op.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/by_element_color_op.cc [ 38%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -MF CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o.d -o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/pymod/export_profile_handle.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/by_chain_color_op.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/uniform_color_op.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/gradient_color_op.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/entity_view_color_op.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/basic_gradient_color_op.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/gradient_level_color_op.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:9, from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/pymod/export_profile_handle.cc:24: /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -MF CMakeFiles/_ost_seq.dir/wrap_seq.cc.o.d -o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/pymod/wrap_seq.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/entity_renderer.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o -MF CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/entity_detail.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/cartoon_renderer.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/custom_renderer.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/cpk_renderer.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/pymod/wrap_seq.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/debug_renderer.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/simple_renderer.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/sline_renderer.cc [ 39%] Linking CXX shared library ../../../../stage/lib/libost_mol_alg.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/atom_scattering_properties.txt /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/atom_scattering_properties.txt cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/stereo_chemical_props.txt /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/stereo_chemical_props.txt cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_mol_alg.so.2.3 -o ../../../../stage/lib/libost_mol_alg.so.2.3.1 CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o CMakeFiles/ost_mol_alg.dir/molck.cc.o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_img_alg.so.2.3.1 ../../../../stage/lib/libost_seq_alg.so.2.3.1 ../../../../stage/lib/libost_conop.so.2.3.1 ../../../../stage/lib/libost_img.so.2.3.1 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_db.so.2.3.1 ../../../../stage/lib/libost_seq.so.2.3.1 ../../../../stage/lib/libost_mol.so.2.3.1 ../../../../stage/lib/libost_info.so.2.3.1 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libsqlite3.so [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/line_trace_renderer.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol_alg.so.2.3.1 ../../../../stage/lib/libost_mol_alg.so.2.3 ../../../../stage/lib/libost_mol_alg.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 39%] Built target ost_mol_alg [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -MF CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/backbone_trace.cc make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 39%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_manager.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/io_manager.cc.o -MF CMakeFiles/ost_io.dir/io_manager.cc.o.d -o CMakeFiles/ost_io.dir/io_manager.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/io_manager.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -MF CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/connect_renderer_base.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -MF CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/trace_renderer_base.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -MF CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/mapped_property.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o -MF CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/tabulated_trig.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/trace_renderer.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -MF CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/fast_spheres.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/render_options.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/line_render_options.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/custom_render_options.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/cpk_render_options.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/simple_render_options.cc [ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/convert.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/convert.cc.o -MF CMakeFiles/ost_io.dir/convert.cc.o.d -o CMakeFiles/ost_io.dir/convert.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/convert.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/sline_render_options.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/line_trace_render_options.cc [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/cartoon_render_options.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/render_options/trace_render_options.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/color_ops/map_handle_color_op.cc /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/convert.cc: In static member function ‘static float ost::io::{anonymous}::ConvertHelper<1, 2, float>::Convert(const float&)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/convert.cc:346:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 346 | reinterpret_cast(&result)[0]=reinterpret_cast(&tmp)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/convert.cc:347:52: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | reinterpret_cast(&result)[1]=reinterpret_cast(&tmp)[0]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/convert.cc: In static member function ‘static void ost::io::{anonymous}::ConvertHelper<1, 2, float>::ConvertIP(float*)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/convert.cc:355:50: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 355 | reinterpret_cast(value)[1]=reinterpret_cast(&tmp)[0]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/convert.cc: In static member function ‘static float ost::io::{anonymous}::ConvertHelper<2, 1, float>::Convert(const float&)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/convert.cc:367:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 367 | reinterpret_cast(&tmp)[0]=reinterpret_cast(&value)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/convert.cc: In static member function ‘static void ost::io::{anonymous}::ConvertHelper<2, 1, float>::ConvertIP(float*)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/convert.cc:375:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 375 | reinterpret_cast(&tmp)[0]=reinterpret_cast(value)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_iso.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/map_iso.cc.o -MF CMakeFiles/ost_gfx.dir/map_iso.cc.o.d -o CMakeFiles/ost_gfx.dir/map_iso.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/map_iso.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_slab.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/map_slab.cc.o -MF CMakeFiles/ost_gfx.dir/map_slab.cc.o.d -o CMakeFiles/ost_gfx.dir/map_slab.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/map_slab.cc [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o -MF CMakeFiles/ost_io.dir/io_utils.cc.o.d -o CMakeFiles/ost_io.dir/io_utils.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/io_utils.cc [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/entity_io_crd_handler.cc [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/entity_io_pqr_handler.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/map_iso_gen.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/map_iso_gen_s.cc [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/entity_io_mae_handler.cc In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/QR:11, from /usr/include/eigen3/Eigen/SVD:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/cartoon_renderer.cc:26: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]’: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const float*’ to ‘static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::triangular_matrix_vector_product::ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]’ declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/map_iso_gen_o.cc [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/pdb_reader.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/map_octree.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -MF CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/impl/octree_isocont.cc [ 43%] Linking CXX shared module ../../../../stage/lib/python3.10/dist-packages/ost/seq/_ost_seq.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.10/dist-packages/ost/seq/_ost_seq.so CMakeFiles/_ost_seq.dir/export_sequence.cc.o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.3.1 ../../../../stage/lib/libost_info.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/entity_io_pdb_handler.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/base/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 44%] Built target _ost_seq [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/pdb_writer.cc make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 44%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -MF CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o.d -o CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/export_tmalign.cc make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 44%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o -MF CMakeFiles/_ost_db.dir/export_linear_db.cc.o.d -o CMakeFiles/_ost_db.dir/export_linear_db.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/pymod/export_linear_db.cc make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 44%] Building CXX object modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -MF CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o.d -o CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod/wrap_seq_alg.cc [ 44%] Linking CXX shared library ../../../stage/lib/libost_gfx.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/test_texture.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/textures/test_texture.png cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/src/glyph_texture.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/textures/glyph_texture.png cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx.dir/link.txt --verbose=1 In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/export_tmalign.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_gfx.so.2.3 -o ../../../stage/lib/libost_gfx.so.2.3.1 CMakeFiles/ost_gfx.dir/bitmap_io.cc.o CMakeFiles/ost_gfx.dir/exporter.cc.o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o CMakeFiles/ost_gfx.dir/color.cc.o CMakeFiles/ost_gfx.dir/primitives.cc.o CMakeFiles/ost_gfx.dir/entity.cc.o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o CMakeFiles/ost_gfx.dir/gfx_node.cc.o CMakeFiles/ost_gfx.dir/gfx_object.cc.o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o CMakeFiles/ost_gfx.dir/input.cc.o CMakeFiles/ost_gfx.dir/prim_list.cc.o CMakeFiles/ost_gfx.dir/scene.cc.o CMakeFiles/ost_gfx.dir/selection.cc.o CMakeFiles/ost_gfx.dir/surface.cc.o CMakeFiles/ost_gfx.dir/gradient.cc.o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o CMakeFiles/ost_gfx.dir/vertex_array.cc.o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o CMakeFiles/ost_gfx.dir/material.cc.o CMakeFiles/ost_gfx.dir/povray.cc.o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o CMakeFiles/ost_gfx.dir/texture.cc.o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o CMakeFiles/ost_gfx.dir/map_iso.cc.o CMakeFiles/ost_gfx.dir/map_slab.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.3.1 ../../../stage/lib/libost_img_alg.so.2.3.1 /usr/lib/x86_64-linux-gnu/libGL.so /usr/lib/x86_64-linux-gnu/libGLU.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_db.so.2.3.1 ../../../stage/lib/libost_seq.so.2.3.1 ../../../stage/lib/libost_mol.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/entity_io_sdf_handler.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gfx.so.2.3.1 ../../../stage/lib/libost_gfx.so.2.3 ../../../stage/lib/libost_gfx.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 44%] Built target ost_gfx [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/entity_io_mmcif_handler.cc [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/sdf_reader.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/pymod/export_linear_db.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -MF CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o.d -o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/wrap_bindings.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod/wrap_seq_alg.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/sdf_writer.cc [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o -MF CMakeFiles/ost_io.dir/mol/save_entity.cc.o.d -o CMakeFiles/ost_io.dir/mol/save_entity.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/save_entity.cc [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o -MF CMakeFiles/ost_io.dir/mol/load_entity.cc.o.d -o CMakeFiles/ost_io.dir/mol/load_entity.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/load_entity.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/wrap_bindings.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/bindings/_ost_bindings.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_bindings.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/bindings/_ost_bindings.so CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_bindings.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_seq.so.2.3.1 ../../../stage/lib/libost_mol.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/format/alt_sstream.hpp:22, from /usr/include/boost/format/internals.hpp:24, from /usr/include/boost/format.hpp:38, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/sdf_writer.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/sdf_writer.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/lga.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./lga.pyc\",\"lga.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/hbplus.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hbplus.pyc\",\"hbplus.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/msms.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./msms.pyc\",\"msms.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/tmtools.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./tmtools.pyc\",\"tmtools.py\",doraise=True)" [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/surface_io_msms_handler.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/dssp.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./dssp.pyc\",\"dssp.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/clustalw.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./clustalw.pyc\",\"clustalw.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/utils.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./utils.pyc\",\"utils.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/naccess.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./naccess.pyc\",\"naccess.py\",doraise=True)" [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o -MF CMakeFiles/ost_io.dir/mol/load_surface.cc.o.d -o CMakeFiles/ost_io.dir/mol/load_surface.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/load_surface.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/hhblits.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hhblits.pyc\",\"hhblits.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/hhblits2.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hhblits2.pyc\",\"hhblits2.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/hhblits3.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hhblits3.pyc\",\"hhblits3.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/blast.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./blast.pyc\",\"blast.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/cadscore.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./cadscore.pyc\",\"cadscore.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/kclust.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./kclust.pyc\",\"kclust.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/ialign.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./ialign.pyc\",\"ialign.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/bindings/pymod/mmseqs2.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./mmseqs2.pyc\",\"mmseqs2.py\",doraise=True)" [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -MF CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o.d -o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/chemdict_parser.cc make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 44%] Built target _ost_bindings [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o -MF CMakeFiles/ost_io.dir/mol/io_profile.cc.o.d -o CMakeFiles/ost_io.dir/mol/io_profile.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/io_profile.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o -MF CMakeFiles/ost_io.dir/mol/dcd_io.cc.o.d -o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/dcd_io.cc [ 46%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o -MF CMakeFiles/_ost_db.dir/wrap_db.cc.o.d -o CMakeFiles/_ost_db.dir/wrap_db.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/pymod/wrap_db.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o -MF CMakeFiles/ost_io.dir/mol/star_parser.cc.o.d -o CMakeFiles/ost_io.dir/mol/star_parser.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/star_parser.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/mmcif_reader.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/mmcif_info.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_str.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/pdb_str.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/stereochemical_params_reader.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/omf.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/omf.cc.o -MF CMakeFiles/ost_io.dir/mol/omf.cc.o.d -o CMakeFiles/ost_io.dir/mol/omf.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/mol/omf.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/pymod/wrap_db.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/db/_ost_db.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_db.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/db/_ost_db.so CMakeFiles/_ost_db.dir/export_linear_db.cc.o CMakeFiles/_ost_db.dir/wrap_db.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_db.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/db/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/db/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 46%] Built target _ost_db [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/clustal_io_handler.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/load.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/load.cc.o -MF CMakeFiles/ost_io.dir/seq/load.cc.o.d -o CMakeFiles/ost_io.dir/seq/load.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/load.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/save.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/save.cc.o -MF CMakeFiles/ost_io.dir/seq/save.cc.o.d -o CMakeFiles/ost_io.dir/seq/save.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/save.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/fasta_io_handler.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/pir_io_handler.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/promod_io_handler.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/hhm_io_handler.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/seq/pssm_io_handler.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o -MF CMakeFiles/ost_io.dir/img/load_map.cc.o.d -o CMakeFiles/ost_io.dir/img/load_map.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/load_map.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_dx_handler.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_spi_handler.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_situs_handler.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_mrc_handler.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_dm3_handler.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc [ 48%] Linking CXX shared module ../../../../stage/lib/python3.10/dist-packages/ost/seq/alg/_ost_seq_alg.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.10/dist-packages/ost/seq/alg/_ost_seq_alg.so CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq_alg.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../../stage/lib/libost_seq.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.3.1 ../../../../stage/lib/libost_info.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_dat_handler.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_ipl_handler.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod/mat.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./mat.pyc\",\"mat.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod/renumber.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./renumber.pyc\",\"renumber.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/seq/alg/pymod/aaindex.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./aaindex.pyc\",\"aaindex.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 48%] Built target _ost_seq_alg make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 48%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/wrap_conop.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -MF CMakeFiles/_ost_conop.dir/wrap_conop.cc.o.d -o CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/wrap_conop.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:32: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_compound.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_compound.cc.o -MF CMakeFiles/_ost_conop.dir/export_compound.cc.o.d -o CMakeFiles/_ost_conop.dir/export_compound.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_compound.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:51:40: warning: ‘int32’ is deprecated [-Wdeprecated-declarations] 51 | class complexint32:public std::complex{ | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED int32_t int32 TIFF_GCC_DEPRECATED; | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:61:40: warning: ‘int16’ is deprecated [-Wdeprecated-declarations] 61 | class complexint16:public std::complex{ | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:80:38: note: declared here 80 | typedef TIFF_MSC_DEPRECATED int16_t int16 TIFF_GCC_DEPRECATED; | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:71:39: warning: ‘int8’ is deprecated [-Wdeprecated-declarations] 71 | class complexint8:public std::complex{ | ^~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:77:38: note: declared here 77 | typedef TIFF_MSC_DEPRECATED int8_t int8 TIFF_GCC_DEPRECATED; | ^~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:105:114: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 105 | void do_tiff_read(tdata_t buf,unsigned int rps, unsigned int width, IST* is,unsigned int& current_row, uint16 spp) | ^ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc: In member function ‘virtual void ost::io::MapIOTiffHandler::do_export(const MapHandle&, TIFF*, ost::io::TIF&) const’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:310:10: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 310 | uint16 spp=1; | ^~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:311:10: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 311 | uint16 fmt =0; | ^~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:312:10: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 312 | uint16 bpp =0 ; | ^~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:338:40: warning: ‘int8’ is deprecated [-Wdeprecated-declarations] 338 | fsr=detail::do_tiff_write; | ^~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:77:38: note: declared here 77 | typedef TIFF_MSC_DEPRECATED int8_t int8 TIFF_GCC_DEPRECATED; | ^~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:343:40: warning: ‘int16’ is deprecated [-Wdeprecated-declarations] 343 | fsr=detail::do_tiff_write; | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:80:38: note: declared here 80 | typedef TIFF_MSC_DEPRECATED int16_t int16 TIFF_GCC_DEPRECATED; | ^~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:348:40: warning: ‘int32’ is deprecated [-Wdeprecated-declarations] 348 | fsr=detail::do_tiff_write; | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED int32_t int32 TIFF_GCC_DEPRECATED; | ^~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:363:40: warning: ‘int16’ is deprecated [-Wdeprecated-declarations] 363 | fsr=detail::do_tiff_write; | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:80:38: note: declared here 80 | typedef TIFF_MSC_DEPRECATED int16_t int16 TIFF_GCC_DEPRECATED; | ^~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:371:40: warning: ‘uint8’ is deprecated [-Wdeprecated-declarations] 371 | fsr=detail::do_tiff_write; | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:78:38: note: declared here 78 | typedef TIFF_MSC_DEPRECATED uint8_t uint8 TIFF_GCC_DEPRECATED; | ^~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:376:40: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 376 | fsr=detail::do_tiff_write; | ^~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:381:40: warning: ‘uint32’ is deprecated [-Wdeprecated-declarations] 381 | fsr=detail::do_tiff_write; | ^~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:84:38: note: declared here 84 | typedef TIFF_MSC_DEPRECATED uint32_t uint32 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:396:40: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 396 | fsr=detail::do_tiff_write; | ^~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:406:54: warning: ‘int8’ is deprecated [-Wdeprecated-declarations] 406 | fsc=detail::do_tiff_write,img::image_state::ComplexSpatialImageState>; | ^~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:77:38: note: declared here 77 | typedef TIFF_MSC_DEPRECATED int8_t int8 TIFF_GCC_DEPRECATED; | ^~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:411:54: warning: ‘int16’ is deprecated [-Wdeprecated-declarations] 411 | fsc=detail::do_tiff_write,img::image_state::ComplexSpatialImageState>; | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:80:38: note: declared here 80 | typedef TIFF_MSC_DEPRECATED int16_t int16 TIFF_GCC_DEPRECATED; | ^~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:416:54: warning: ‘int32’ is deprecated [-Wdeprecated-declarations] 416 | fsc=detail::do_tiff_write,img::image_state::ComplexSpatialImageState>; | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED int32_t int32 TIFF_GCC_DEPRECATED; | ^~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc: In member function ‘void ost::io::MapIOTiffHandler::load_image_data(TIFF*, ost::img::ImageHandle&, const ost::io::TIF&)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:556:10: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 556 | uint16 bpp,spp,plc,ori,reso=RESUNIT_NONE,fmt=SAMPLEFORMAT_UINT; | ^~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:556:14: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 556 | uint16 bpp,spp,plc,ori,reso=RESUNIT_NONE,fmt=SAMPLEFORMAT_UINT; | ^~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:556:18: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 556 | uint16 bpp,spp,plc,ori,reso=RESUNIT_NONE,fmt=SAMPLEFORMAT_UINT; | ^~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:556:22: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 556 | uint16 bpp,spp,plc,ori,reso=RESUNIT_NONE,fmt=SAMPLEFORMAT_UINT; | ^~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:556:26: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 556 | uint16 bpp,spp,plc,ori,reso=RESUNIT_NONE,fmt=SAMPLEFORMAT_UINT; | ^~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:556:44: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 556 | uint16 bpp,spp,plc,ori,reso=RESUNIT_NONE,fmt=SAMPLEFORMAT_UINT; | ^~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:653:30: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 653 | detail::do_tiff_read(buf,rowcount,width,is,current_row,spp); | ^~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:656:30: warning: ‘uint32’ is deprecated [-Wdeprecated-declarations] 656 | detail::do_tiff_read(buf,rowcount,width,is,current_row,spp); | ^~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:84:38: note: declared here 84 | typedef TIFF_MSC_DEPRECATED uint32_t uint32 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:662:12: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 662 | uint16 photometric; | ^~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:665:17: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 665 | uint16* lookuptable_red; | ^~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:666:17: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 666 | uint16* lookuptable_green; | ^~~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:667:17: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 667 | uint16* lookuptable_blue; | ^~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:706:32: warning: ‘int8’ is deprecated [-Wdeprecated-declarations] 706 | detail::do_tiff_read(buf,rowcount,width,isr,current_row,spp); | ^~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:77:38: note: declared here 77 | typedef TIFF_MSC_DEPRECATED int8_t int8 TIFF_GCC_DEPRECATED; | ^~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:708:32: warning: ‘uint8’ is deprecated [-Wdeprecated-declarations] 708 | detail::do_tiff_read(buf,rowcount,width,isr,current_row,spp); | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:78:38: note: declared here 78 | typedef TIFF_MSC_DEPRECATED uint8_t uint8 TIFF_GCC_DEPRECATED; | ^~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:717:32: warning: ‘int16’ is deprecated [-Wdeprecated-declarations] 717 | detail::do_tiff_read(buf,rowcount,width,isr,current_row,spp); | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:80:38: note: declared here 80 | typedef TIFF_MSC_DEPRECATED int16_t int16 TIFF_GCC_DEPRECATED; | ^~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:719:32: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 719 | detail::do_tiff_read(buf,rowcount,width,isr,current_row,spp); | ^~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:730:32: warning: ‘int32’ is deprecated [-Wdeprecated-declarations] 730 | detail::do_tiff_read(buf,rowcount,width,isr,current_row,spp); | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED int32_t int32 TIFF_GCC_DEPRECATED; | ^~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:732:32: warning: ‘uint32’ is deprecated [-Wdeprecated-declarations] 732 | detail::do_tiff_read(buf,rowcount,width,isr,current_row,spp); | ^~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:84:38: note: declared here 84 | typedef TIFF_MSC_DEPRECATED uint32_t uint32 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:771:12: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 771 | uint16 photometric; | ^~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:774:17: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 774 | uint16* lookuptable_red; | ^~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:775:17: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 775 | uint16* lookuptable_green; | ^~~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:776:17: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 776 | uint16* lookuptable_blue; | ^~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/wrap_conop.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_processor.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_processor.cc.o -MF CMakeFiles/_ost_conop.dir/export_processor.cc.o.d -o CMakeFiles/_ost_conop.dir/export_processor.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_processor.cc [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_heuristic.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -MF CMakeFiles/_ost_conop.dir/export_heuristic.cc.o.d -o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_heuristic.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_nanoscope_handler.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh:32, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/image_state.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/alg_transform.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/img/alg/transform.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_compound.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:38: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:51:40: warning: ‘int32’ is deprecated [-Wdeprecated-declarations] 51 | class complexint32:public std::complex{ | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED int32_t int32 TIFF_GCC_DEPRECATED; | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:38: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:61:40: warning: ‘int16’ is deprecated [-Wdeprecated-declarations] 61 | class complexint16:public std::complex{ | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:80:38: note: declared here 80 | typedef TIFF_MSC_DEPRECATED int16_t int16 TIFF_GCC_DEPRECATED; | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:38: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:71:39: warning: ‘int8’ is deprecated [-Wdeprecated-declarations] 71 | class complexint8:public std::complex{ | ^~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:77:38: note: declared here 77 | typedef TIFF_MSC_DEPRECATED int8_t int8 TIFF_GCC_DEPRECATED; | ^~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:38: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:105:114: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 105 | void do_tiff_read(tdata_t buf,unsigned int rps, unsigned int width, IST* is,unsigned int& current_row, uint16 spp) | ^ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_df3_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_png_handler.cc /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc: In member function ‘virtual void ost::io::MapIOJpkHandler::Import(ost::img::ImageHandle&, const boost::filesystem::path&, const ost::io::ImageFormatBase&)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:128:11: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 128 | uint16* reflect; | ^~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:129:11: warning: ‘uint32’ is deprecated [-Wdeprecated-declarations] 129 | uint32* dummy; | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:84:38: note: declared here 84 | typedef TIFF_MSC_DEPRECATED uint32_t uint32 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc: In member function ‘virtual void ost::io::MapIOJpkHandler::Import(ost::img::MapHandle&, std::istream&, const ost::io::ImageFormatBase&)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:223:11: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 223 | uint16* reflect; | ^~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:224:11: warning: ‘uint32’ is deprecated [-Wdeprecated-declarations] 224 | uint32* dummy; | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:84:38: note: declared here 84 | typedef TIFF_MSC_DEPRECATED uint32_t uint32 TIFF_GCC_DEPRECATED; | ^~~~~~ [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o -MF CMakeFiles/ost_io.dir/img/image_format.cc.o.d -o CMakeFiles/ost_io.dir/img/image_format.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/image_format.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o -MF CMakeFiles/ost_io.dir/img/tiff_util.cc.o.d -o CMakeFiles/ost_io.dir/img/tiff_util.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.cc [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -MF CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o.d -o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_amino_acids.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_heuristic.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.cc:26: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:51:40: warning: ‘int32’ is deprecated [-Wdeprecated-declarations] 51 | class complexint32:public std::complex{ | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.cc:26: /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED int32_t int32 TIFF_GCC_DEPRECATED; | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.cc:26: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:61:40: warning: ‘int16’ is deprecated [-Wdeprecated-declarations] 61 | class complexint16:public std::complex{ | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.cc:26: /usr/include/x86_64-linux-gnu/tiff.h:80:38: note: declared here 80 | typedef TIFF_MSC_DEPRECATED int16_t int16 TIFF_GCC_DEPRECATED; | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.cc:26: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:71:39: warning: ‘int8’ is deprecated [-Wdeprecated-declarations] 71 | class complexint8:public std::complex{ | ^~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.cc:26: /usr/include/x86_64-linux-gnu/tiff.h:77:38: note: declared here 77 | typedef TIFF_MSC_DEPRECATED int8_t int8 TIFF_GCC_DEPRECATED; | ^~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.cc:26: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:105:114: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 105 | void do_tiff_read(tdata_t buf,unsigned int rps, unsigned int width, IST* is,unsigned int& current_row, uint16 spp) | ^ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/src/img/tiff_util.cc:26: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o -MF CMakeFiles/_ost_conop.dir/export_diag.cc.o.d -o CMakeFiles/_ost_conop.dir/export_diag.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_diag.cc [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o -MF CMakeFiles/_ost_conop.dir/export_conop.cc.o.d -o CMakeFiles/_ost_conop.dir/export_conop.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_conop.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_processor.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -MF CMakeFiles/_ost_conop.dir/export_rule_based.cc.o.d -o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_rule_based.cc [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -MF CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o.d -o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_ring_finder.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_amino_acids.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_diag.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_rule_based.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_ring_finder.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/export_conop.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Linking CXX shared library ../../../stage/lib/libost_io.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_io.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_io.so.2.3 -o ../../../stage/lib/libost_io.so.2.3.1 CMakeFiles/ost_io.dir/io_manager.cc.o CMakeFiles/ost_io.dir/convert.cc.o CMakeFiles/ost_io.dir/io_utils.cc.o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o CMakeFiles/ost_io.dir/mol/save_entity.cc.o CMakeFiles/ost_io.dir/mol/load_entity.cc.o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o CMakeFiles/ost_io.dir/mol/load_surface.cc.o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o CMakeFiles/ost_io.dir/mol/io_profile.cc.o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o CMakeFiles/ost_io.dir/mol/star_parser.cc.o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o CMakeFiles/ost_io.dir/mol/omf.cc.o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o CMakeFiles/ost_io.dir/seq/load.cc.o CMakeFiles/ost_io.dir/seq/save.cc.o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o CMakeFiles/ost_io.dir/img/load_map.cc.o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o CMakeFiles/ost_io.dir/img/image_format.cc.o CMakeFiles/ost_io.dir/img/tiff_util.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_mol_alg.so.2.3.1 ../../../stage/lib/libost_img_alg.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_conop.so.2.3.1 ../../../stage/lib/libost_db.so.2.3.1 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.3.1 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.3.1 ../../../stage/lib/libost_seq.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_io.so.2.3.1 ../../../stage/lib/libost_io.so.2.3 ../../../stage/lib/libost_io.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 50%] Built target ost_io make -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/depend make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend make -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/depend make -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/tests /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/tests /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/DependInfo.cmake --color= make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/DependInfo.cmake --color= make -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/tools/molck /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/tools/molck /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/tools/molck/CMakeFiles/molck.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 50%] Generating tools/moc_tool_options_win.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp_parameters make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 50%] Building CXX object modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o [ 50%] Building CXX object modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -MF CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o.d -o CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/src/chemdict_tool.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -MF CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o.d -o CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/tests/test_mae_standalone.cc make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/build [ 50%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/forcefield.cc.o make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/forcefield.cc.o -MF CMakeFiles/ost_mol_mm.dir/forcefield.cc.o.d -o CMakeFiles/ost_mol_mm.dir/forcefield.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/forcefield.cc [ 50%] Building CXX object modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o -MF CMakeFiles/lddt.dir/lddt.cc.o.d -o CMakeFiles/lddt.dir/lddt.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/src/lddt.cc [ 50%] Building CXX object tools/molck/CMakeFiles/molck.dir/main.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/tools/molck && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT tools/molck/CMakeFiles/molck.dir/main.cc.o -MF CMakeFiles/molck.dir/main.cc.o.d -o CMakeFiles/molck.dir/main.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/tools/molck/main.cc [ 50%] Generating data_viewer/moc_argand.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_argand.cpp_parameters [ 50%] Generating data_viewer/moc_data_viewer.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp_parameters [ 50%] Generating data_viewer/moc_data_viewer_panel_base.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp_parameters [ 51%] Generating data_viewer/moc_fft_panel.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_fft_panel.cpp_parameters [ 51%] Generating data_viewer/moc_info_panel.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_info_panel.cpp_parameters [ 51%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o -MF CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o.d -o CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/ff_reader.cc [ 51%] Generating data_viewer/moc_null_overlay.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp_parameters [ 51%] Generating data_viewer/moc_overlay_base.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp_parameters [ 51%] Generating data_viewer/moc_overlay_manager_gui.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_manager_gui.cpp_parameters [ 51%] Generating data_viewer/moc_pointlist_overlay_base.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp_parameters [ 51%] Generating messages/moc_log_reader.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp_parameters [ 51%] Generating messages/moc_message_box_widget.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp_parameters [ 51%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o -MF CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o.d -o CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/buildingblock.cc [ 51%] Generating messages/moc_message_widget.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp_parameters [ 51%] Generating moc_dock_widget.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_dock_widget.cpp_parameters [ 51%] Generating moc_file_browser.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_file_browser.cpp_parameters [ 51%] Generating moc_file_type_dialog.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp_parameters [ 51%] Generating moc_file_viewer.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_file_viewer.cpp_parameters [ 51%] Generating moc_gl_canvas.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp_parameters [ 52%] Generating moc_gl_win.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_win.cpp_parameters [ 52%] Generating moc_gosty_app.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty_app.cpp_parameters [ 52%] Generating moc_main.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_main.cpp_parameters [ 52%] Generating moc_main_area.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_main_area.cpp_parameters [ 52%] Generating moc_main_window.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_main_window.cpp_parameters [ 52%] Generating moc_perspective.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_perspective.cpp_parameters [ 52%] Generating moc_scene_menu.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_menu.cpp_parameters [ 52%] Generating moc_scene_selection.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_selection.cpp_parameters [ 52%] Generating moc_widget.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_widget.cpp_parameters [ 52%] Generating moc_widget_geom_handler.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp_parameters [ 52%] Linking CXX executable ../../../stage/bin/test_mae_standalone cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mae_standalone.dir/link.txt --verbose=1 [ 53%] Generating moc_widget_pool.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -o ../../../stage/bin/test_mae_standalone -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib ../../../stage/lib/libost_io.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../stage/lib/libost_mol_alg.so.2.3.1 ../../../stage/lib/libost_conop.so.2.3.1 ../../../stage/lib/libost_db.so.2.3.1 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.3.1 ../../../stage/lib/libost_seq.so.2.3.1 ../../../stage/lib/libost_mol.so.2.3.1 ../../../stage/lib/libost_img_alg.so.2.3.1 ../../../stage/lib/libost_img.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_pool.cpp_parameters [ 53%] Generating panels/moc_bottom_bar.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp_parameters [ 53%] Generating panels/moc_button_box.cpp [ 53%] Generating panels/moc_button_bar.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_box.cpp_parameters cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp_parameters [ 53%] Generating panels/moc_event_button.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_event_button.cpp_parameters [ 53%] Generating panels/moc_drop_box.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp_parameters [ 53%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/conop/_ost_conop.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_conop.dir/link.txt --verbose=1 [ 53%] Generating panels/moc_panel_bar.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp_parameters [ 53%] Generating panels/moc_panel_bar_widget_holder.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp_parameters /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/conop/_ost_conop.so CMakeFiles/_ost_conop.dir/wrap_conop.cc.o CMakeFiles/_ost_conop.dir/export_compound.cc.o CMakeFiles/_ost_conop.dir/export_processor.cc.o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o CMakeFiles/_ost_conop.dir/export_conop.cc.o CMakeFiles/_ost_conop.dir/export_diag.cc.o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_db.so.2.3.1 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.3.1 ../../../stage/lib/libost_mol.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so [ 55%] Generating panels/moc_panel_manager.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp_parameters [ 55%] Generating panels/moc_panel_widget_container.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp_parameters [ 55%] Generating panels/moc_splitter_panel_bar.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_splitter_panel_bar.cpp_parameters [ 55%] Generating panels/moc_side_bar.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp_parameters [ 55%] Generating python_shell/moc_completer_base.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp_parameters [ 55%] Generating python_shell/moc_gutter.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp_parameters [ 55%] Generating panels/moc_tabbed_panel_bar.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_tabbed_panel_bar.cpp_parameters [ 55%] Generating python_shell/moc_main_thread_runner.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_main_thread_runner.cpp_parameters [ 55%] Generating python_shell/moc_output_redirector.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp_parameters [ 55%] Generating python_shell/moc_path_completer.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp_parameters [ 55%] Generating python_shell/moc_python_completer.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp_parameters [ 55%] Generating python_shell/moc_python_interpreter.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp_parameters [ 55%] Generating python_shell/moc_python_interpreter_worker.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp_parameters [ 56%] Generating python_shell/moc_python_namespace_tree_model.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp_parameters cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/conop/./__init__.pyc\",\"__init__.py\",doraise=True)" [ 56%] Generating python_shell/moc_python_shell.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp_parameters [ 56%] Generating python_shell/moc_python_shell_widget.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp_parameters make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 56%] Generating python_shell/moc_state.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state.cpp_parameters [ 56%] Generating python_shell/moc_state_machine.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp_parameters cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/conop/pymod/cleanup.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/conop/./cleanup.pyc\",\"cleanup.py\",doraise=True)" [ 56%] Built target test_mae_standalone make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 56%] Generating python_shell/moc_text_logger.cpp [ 56%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp_parameters cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o -MF CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o.d -o CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/gromacs_block_modifiers.cc [ 56%] Generating python_shell/moc_transition.cpp [ 56%] Built target _ost_conop cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp_parameters [ 56%] Generating scene_win/moc_context_menu.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_context_menu.cpp_parameters [ 56%] Generating python_shell/moc_transition_guard.cpp [ 56%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o -MF CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o.d -o CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/heuristic_block_modifiers.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp_parameters [ 56%] Generating scene_win/moc_current_selection_node.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_current_selection_node.cpp_parameters [ 57%] Generating scene_win/moc_custom_part_node.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_custom_part_node.cpp_parameters [ 57%] Generating scene_win/moc_entity_node.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp_parameters [ 57%] Generating scene_win/moc_entity_part_node.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_entity_part_node.cpp_parameters [ 57%] Generating scene_win/moc_gfx_scene_node.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_gfx_scene_node.cpp_parameters [ 57%] Generating scene_win/moc_label_node.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp_parameters [ 57%] Generating scene_win/moc_render_mode_node.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_render_mode_node.cpp_parameters [ 57%] Generating scene_win/moc_render_modes_node.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp_parameters [ 57%] Generating scene_win/moc_root_node.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_root_node.cpp_parameters [ 57%] Generating scene_win/moc_scene_node.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp_parameters [ 57%] Generating scene_win/moc_scene_win.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_win.cpp_parameters [ 57%] Linking CXX executable ../../../stage/bin/chemdict_tool cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdict_tool.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -o ../../../stage/bin/chemdict_tool -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.3.1 ../../../stage/lib/libost_mol_alg.so.2.3.1 ../../../stage/lib/libost_conop.so.2.3.1 ../../../stage/lib/libost_db.so.2.3.1 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.3.1 ../../../stage/lib/libost_seq.so.2.3.1 ../../../stage/lib/libost_mol.so.2.3.1 ../../../stage/lib/libost_img_alg.so.2.3.1 ../../../stage/lib/libost_img.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 57%] Generating scene_win/moc_scene_win_model.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_win_model.cpp_parameters make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 57%] Built target chemdict_tool make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 57%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -MF CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o.d -o CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/wrap_gfx.cc [ 57%] Generating sequence_viewer/moc_align_properties_painter.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp_parameters [ 57%] Generating sequence_viewer/moc_alignment_view_object.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp_parameters [ 57%] Generating sequence_viewer/moc_background_painter.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp_parameters [ 57%] Generating sequence_viewer/moc_base_row.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_row.cpp_parameters [ 58%] Generating sequence_viewer/moc_base_view_object.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp_parameters [ 58%] Generating sequence_viewer/moc_conservation_painter.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_conservation_painter.cpp_parameters [ 58%] Generating sequence_viewer/moc_painter.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_painter.cpp_parameters [ 58%] Generating sequence_viewer/moc_secstr_row.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_secstr_row.cpp_parameters [ 58%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene.cc.o -MF CMakeFiles/_ost_gfx.dir/export_scene.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_scene.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_scene.cc [ 58%] Generating sequence_viewer/moc_seq_secstr_painter.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_secstr_painter.cpp_parameters [ 60%] Generating sequence_viewer/moc_seq_selection_painter.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_selection_painter.cpp_parameters [ 60%] Generating sequence_viewer/moc_seq_text_painter.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_text_painter.cpp_parameters [ 60%] Generating sequence_viewer/moc_sequence_delegate.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_delegate.cpp_parameters [ 60%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_gfx_node.cc [ 60%] Generating sequence_viewer/moc_sequence_model.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp_parameters [ 60%] Generating sequence_viewer/moc_sequence_row.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_row.cpp_parameters [ 60%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o -MF CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_symmetry_node.cc [ 60%] Generating sequence_viewer/moc_sequence_search_bar.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp_parameters [ 61%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_gfx_obj.cc [ 61%] Generating sequence_viewer/moc_sequence_table_view.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_table_view.cpp_parameters [ 61%] Generating sequence_viewer/moc_sequence_view_object.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp_parameters [ 61%] Generating sequence_viewer/moc_sequence_viewer.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp_parameters [ 61%] Generating sequence_viewer/moc_tick_painter.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_tick_painter.cpp_parameters [ 61%] Linking CXX executable ../../../../stage/bin/lddt cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lddt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/lddt.dir/lddt.cc.o -o ../../../../stage/bin/lddt -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_io.so.2.3.1 ../../../../stage/lib/libost_mol_alg.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_seq_alg.so.2.3.1 ../../../../stage/lib/libost_img_alg.so.2.3.1 ../../../../stage/lib/libost_img.so.2.3.1 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.3.1 ../../../../stage/lib/libost_db.so.2.3.1 ../../../../stage/lib/libost_seq.so.2.3.1 ../../../../stage/lib/libost_mol.so.2.3.1 ../../../../stage/lib/libost_info.so.2.3.1 ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 61%] Generating sequence_viewer/moc_title_row.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_title_row.cpp_parameters In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/wrap_gfx.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Generating tools/moc_measure_tool.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp_parameters make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 61%] Built target lddt make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 61%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -MF CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/wrap_mol_alg.cc [ 62%] Generating tools/moc_tool.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool.cpp_parameters [ 62%] Generating tools/moc_tool_bar.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp_parameters [ 62%] Generating tools/moc_tool_manager.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp_parameters [ 62%] Generating tools/moc_tool_option.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_option.cpp_parameters [ 62%] Generating tools/moc_tool_option_group.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_option_group.cpp_parameters [ 62%] Generating tools/moc_tool_options.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp_parameters [ 62%] Generating tools/moc_tool_options_widget.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_widget.cpp_parameters [ 62%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/interaction.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/interaction.cc.o -MF CMakeFiles/ost_mol_mm.dir/interaction.cc.o.d -o CMakeFiles/ost_mol_mm.dir/interaction.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/interaction.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 62%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_file_browser.cpp [ 62%] Linking CXX executable ../../stage/bin/molck cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/tools/molck && /usr/bin/cmake -E cmake_link_script CMakeFiles/molck.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/molck.dir/main.cc.o -o ../../stage/bin/molck -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../stage/lib/libost_io.so.2.3.1 ../../stage/lib/libost_mol_alg.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../stage/lib/libost_seq_alg.so.2.3.1 ../../stage/lib/libost_conop.so.2.3.1 ../../stage/lib/libost_db.so.2.3.1 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../stage/lib/libost_seq.so.2.3.1 ../../stage/lib/libost_mol.so.2.3.1 ../../stage/lib/libost_img_alg.so.2.3.1 ../../stage/lib/libost_img.so.2.3.1 ../../stage/lib/libost_info.so.2.3.1 ../../stage/lib/libost_base.so.2.3.1 ../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 62%] Built target molck [ 62%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/simulation.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/simulation.cc.o -MF CMakeFiles/ost_mol_mm.dir/simulation.cc.o.d -o CMakeFiles/ost_mol_mm.dir/simulation.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/simulation.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_symmetry_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_scene.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_gfx_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/wrap_mol_alg.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_entity.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_entity.cc.o -MF CMakeFiles/_ost_gfx.dir/export_entity.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_entity.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_entity.cc [ 62%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/modeller.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/modeller.cc.o -MF CMakeFiles/ost_mol_mm.dir/modeller.cc.o.d -o CMakeFiles/ost_mol_mm.dir/modeller.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/modeller.cc [ 62%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o -MF CMakeFiles/_ost_gfx.dir/export_surface.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_surface.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_surface.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_gfx_obj.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primitives.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primitives.cc.o -MF CMakeFiles/_ost_gfx.dir/export_primitives.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_primitives.cc [ 62%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_entity.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_surface.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primlist.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primlist.cc.o -MF CMakeFiles/_ost_gfx.dir/export_primlist.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_primlist.cc [ 62%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -MF CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_scene_observer.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_primitives.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_render_options.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_render_options.cc.o -MF CMakeFiles/_ost_gfx.dir/export_render_options.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_render_options.cc [ 62%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o -MF CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o.d -o CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/state_extractor.cc [ 62%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_file_viewer.cpp [ 62%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color.cc.o -MF CMakeFiles/_ost_gfx.dir/export_color.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_color.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_color.cc [ 62%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gradient.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gradient.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gradient.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_gradient.cc [ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp [ 64%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/observer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/observer.cc.o -MF CMakeFiles/ost_mol_mm.dir/observer.cc.o.d -o CMakeFiles/ost_mol_mm.dir/observer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/observer.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_scene_observer.cc:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_primlist.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/system_creator.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/system_creator.cc.o -MF CMakeFiles/ost_mol_mm.dir/system_creator.cc.o.d -o CMakeFiles/ost_mol_mm.dir/system_creator.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/system_creator.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_color.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -MF CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_color_ops.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_render_options.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/gl_canvas.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp:10: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/gl_canvas.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_win.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_gradient.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -MF CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_glwin_base.cc [ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o -MF CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_menu.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_color_ops.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o -MF CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o.d -o CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/topology_creator.cc [ 66%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_exporter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_exporter.cc.o -MF CMakeFiles/_ost_gfx.dir/export_exporter.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_exporter.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_glwin_base.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -MF CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_bitmap.cc [ 66%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology.cc.o -MF CMakeFiles/ost_mol_mm.dir/topology.cc.o.d -o CMakeFiles/ost_mol_mm.dir/topology.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/topology.cc [ 66%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/steep.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/steep.cc.o -MF CMakeFiles/ost_mol_mm.dir/steep.cc.o.d -o CMakeFiles/ost_mol_mm.dir/steep.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/steep.cc [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty_app.cpp [ 66%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_map.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_map.cc.o -MF CMakeFiles/_ost_gfx.dir/export_map.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_map.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_map.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_exporter.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_main.cpp [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_area.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_area.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main_area.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main_area.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_main_area.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_bitmap.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty_app.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_perspective.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_perspective.cpp.o -MF CMakeFiles/ost_gui.dir/moc_perspective.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_perspective.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_perspective.cpp [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o -MF CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_dock_widget.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/export_map.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_window.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_window.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main_window.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main_window.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_main_window.cpp [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o -MF CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_selection.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_main.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_dock_widget.cpp:10: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/dock_widget.hh:38:77: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdockwidget.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDockWidget:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/dock_widget.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_dock_widget.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_widget.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_main_window.cpp:10: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main_window.hh:35, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_main_window.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_pool.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_row.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_conservation_painter.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_painter.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_secstr_row.cpp [ 67%] Linking CXX shared library ../../../../stage/lib/libost_mol_mm.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/AMBER03.dat /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/forcefields/AMBER03.dat cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/src/CHARMM27.dat /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/forcefields/CHARMM27.dat cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_mm.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_mol_mm.so.2.3 -o ../../../../stage/lib/libost_mol_mm.so.2.3.1 CMakeFiles/ost_mol_mm.dir/forcefield.cc.o CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o CMakeFiles/ost_mol_mm.dir/interaction.cc.o CMakeFiles/ost_mol_mm.dir/simulation.cc.o CMakeFiles/ost_mol_mm.dir/modeller.cc.o CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o CMakeFiles/ost_mol_mm.dir/observer.cc.o CMakeFiles/ost_mol_mm.dir/system_creator.cc.o CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o CMakeFiles/ost_mol_mm.dir/topology.cc.o CMakeFiles/ost_mol_mm.dir/steep.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_program_options.so ../../../../stage/lib/libost_io.so.2.3.1 /usr/lib/x86_64-linux-gnu/libOpenMM.so ../../../../stage/lib/libost_mol_alg.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_program_options.so ../../../../stage/lib/libost_conop.so.2.3.1 ../../../../stage/lib/libost_db.so.2.3.1 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_seq_alg.so.2.3.1 ../../../../stage/lib/libost_seq.so.2.3.1 ../../../../stage/lib/libost_mol.so.2.3.1 ../../../../stage/lib/libost_img_alg.so.2.3.1 ../../../../stage/lib/libost_img.so.2.3.1 ../../../../stage/lib/libost_info.so.2.3.1 ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 67%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/gfx/_ost_gfx.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/gradients.xml /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/scene/gradients.xml cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gfx.dir/link.txt --verbose=1 [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_secstr_painter.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/gfx/_ost_gfx.so CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o CMakeFiles/_ost_gfx.dir/export_scene.cc.o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o CMakeFiles/_ost_gfx.dir/export_entity.cc.o CMakeFiles/_ost_gfx.dir/export_surface.cc.o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o CMakeFiles/_ost_gfx.dir/export_color.cc.o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o CMakeFiles/_ost_gfx.dir/export_map.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_gfx.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_conop.so.2.3.1 ../../../stage/lib/libost_db.so.2.3.1 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.3.1 ../../../stage/lib/libost_mol.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_img_alg.so.2.3.1 ../../../stage/lib/libost_img.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libGL.so /usr/lib/x86_64-linux-gnu/libGLU.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 69%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_svd_superpose.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol_mm.so.2.3.1 ../../../../stage/lib/libost_mol_mm.so.2.3 ../../../../stage/lib/libost_mol_mm.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 69%] Built target ost_mol_mm [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_selection_painter.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gfx/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gfx/pymod/py_gfx_obj.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gfx/./py_gfx_obj.pyc\",\"py_gfx_obj.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 69%] Built target _ost_gfx [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_text_painter.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_delegate.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_row.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_svd_superpose.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_table_view.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_tick_painter.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_title_row.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp [ 70%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_clash.cc [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 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/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o.d -o 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp [ 70%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_trajectory_analysis.cc [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_clash.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_trajectory_analysis.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_box.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/transition.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_event_button.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp [ 73%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_structure_analysis.cc [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_splitter_panel_bar.cpp [ 73%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_contact_overlap.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/transition_guard.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_tabbed_panel_bar.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_context_menu.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_current_selection_node.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_custom_part_node.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_gfx_scene_node.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp [ 74%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_accessibility.cc [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_entity_part_node.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_structure_analysis.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_contact_overlap.cc:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_sec_structure.cc [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_render_mode_node.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp [ 75%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_non_standard.cc [ 75%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_molck.cc [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_root_node.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_accessibility.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_win.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_sec_structure.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_win_model.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_non_standard.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_molck.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_option_group.cpp [ 76%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_membrane.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool.cpp:10: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 76%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_entity_to_density.cc [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_option.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_widget.cpp In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool_bar.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp:10: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool_bar.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_membrane.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool_manager.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp:10: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool_manager.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/export_entity_to_density.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_argand.cpp [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_fft_panel.cpp [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_info_panel.cpp In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/measure_tool.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp:10: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/measure_tool.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool_options_win.hh:27, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp:10: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool_options_win.hh:27, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_manager_gui.cpp [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o -c 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-D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/thin_splitter.cc.o -MF CMakeFiles/ost_gui.dir/thin_splitter.cc.o.d -o CMakeFiles/ost_gui.dir/thin_splitter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/thin_splitter.cc [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/perspective.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/perspective.cc.o -MF CMakeFiles/ost_gui.dir/perspective.cc.o.d -o CMakeFiles/ost_gui.dir/perspective.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/perspective.cc [ 78%] Linking CXX shared module ../../../../stage/lib/python3.10/dist-packages/ost/mol/alg/_ost_mol_alg.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.10/dist-packages/ost/mol/alg/_ost_mol_alg.so CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol_alg.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_img_alg.so.2.3.1 ../../../../stage/lib/libost_img.so.2.3.1 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_seq_alg.so.2.3.1 ../../../../stage/lib/libost_conop.so.2.3.1 ../../../../stage/lib/libost_db.so.2.3.1 ../../../../stage/lib/libost_seq.so.2.3.1 ../../../../stage/lib/libost_mol.so.2.3.1 ../../../../stage/lib/libost_info.so.2.3.1 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libsqlite3.so [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_registry.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_registry.cc.o -MF CMakeFiles/ost_gui.dir/widget_registry.cc.o.d -o CMakeFiles/ost_gui.dir/widget_registry.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/widget_registry.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/views.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./views.pyc\",\"views.py\",doraise=True)" [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_browser.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_browser.cc.o -MF CMakeFiles/ost_gui.dir/file_browser.cc.o.d -o CMakeFiles/ost_gui.dir/file_browser.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/file_browser.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/superpose.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./superpose.pyc\",\"superpose.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/qsscoring.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./qsscoring.pyc\",\"qsscoring.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/trajectory_analysis.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./trajectory_analysis.pyc\",\"trajectory_analysis.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/structure_analysis.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./structure_analysis.pyc\",\"structure_analysis.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/helix_kinks.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./helix_kinks.pyc\",\"helix_kinks.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/alg/pymod/hbond.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./hbond.pyc\",\"hbond.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 79%] Built target _ost_mol_alg make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 79%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o -MF CMakeFiles/_ost_io.dir/wrap_io.cc.o.d -o CMakeFiles/_ost_io.dir/wrap_io.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/wrap_io.cc [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_type_dialog.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_type_dialog.cc.o -MF CMakeFiles/ost_gui.dir/file_type_dialog.cc.o.d -o CMakeFiles/ost_gui.dir/file_type_dialog.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/file_type_dialog.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/../../../../../modules/gui/src/data_viewer/data_viewer.hh:37, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp:10: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:35, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/../../../../../modules/gui/src/data_viewer/data_viewer.hh:37, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_viewer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_viewer.cc.o -MF CMakeFiles/ost_gui.dir/file_viewer.cc.o.d -o CMakeFiles/ost_gui.dir/file_viewer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/file_viewer.cc [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/main.cc.o -MF CMakeFiles/ost_gui.dir/main.cc.o.d -o CMakeFiles/ost_gui.dir/main.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main.cc [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_canvas.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gl_canvas.cc.o -MF CMakeFiles/ost_gui.dir/gl_canvas.cc.o.d -o CMakeFiles/ost_gui.dir/gl_canvas.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.cc [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/dock_widget.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/dock_widget.cc.o -MF CMakeFiles/ost_gui.dir/dock_widget.cc.o.d -o CMakeFiles/ost_gui.dir/dock_widget.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/dock_widget.cc [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_window.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/main_window.cc.o -MF CMakeFiles/ost_gui.dir/main_window.cc.o.d -o CMakeFiles/ost_gui.dir/main_window.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.cc [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_win.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gl_win.cc.o -MF CMakeFiles/ost_gui.dir/gl_win.cc.o.d -o CMakeFiles/ost_gui.dir/gl_win.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_win.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/dock_widget.cc:25: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/dock_widget.hh:38:77: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdockwidget.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDockWidget:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/dock_widget.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/dock_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_menu.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_menu.cc.o -MF CMakeFiles/ost_gui.dir/scene_menu.cc.o.d -o CMakeFiles/ost_gui.dir/scene_menu.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_menu.cc [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget.cc.o -MF CMakeFiles/ost_gui.dir/widget.cc.o.d -o CMakeFiles/ost_gui.dir/widget.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/widget.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.cc:25: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.hh:35, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.cc:26: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/dock_widget.hh:38:77: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.hh:35, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.cc: In member function ‘void ost::gui::MainWindow::AddDockWidget(QWidget*, const QString&, bool, int)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.cc:60:47: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 60 | DockWidget* dock = new DockWidget(name, this); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.hh:35, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.cc:71:33: warning: ‘QVariant qVariantFromValue(const T&) [with T = QDockWidget*]’ is deprecated: Use QVariant::fromValue() instead. [-Wdeprecated-declarations] 71 | act->setData(qVariantFromValue((QDockWidget*)dock)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qaction.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmenu.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMenu:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.hh:36, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_window.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qvariant.h:530:17: note: declared here 530 | inline QVariant qVariantFromValue(const T &t) | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/wrap_io.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/file_browser.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/admin.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/admin.cc.o -MF CMakeFiles/ost_gui.dir/admin.cc.o.d -o CMakeFiles/ost_gui.dir/admin.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/admin.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.cc:22: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_pool.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_pool.cc.o -MF CMakeFiles/ost_gui.dir/widget_pool.cc.o.d -o CMakeFiles/ost_gui.dir/widget_pool.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/widget_pool.cc [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_widget.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_widget.cc.o -MF CMakeFiles/ost_gui.dir/messages/message_widget.cc.o.d -o CMakeFiles/ost_gui.dir/messages/message_widget.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/messages/message_widget.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_win.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o -MF CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o.d -o CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/messages/message_box_widget.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/smart_ptr/weak_ptr.hpp:17, from /usr/include/boost/smart_ptr/enable_shared_from_this.hpp:16, from /usr/include/boost/enable_shared_from_this.hpp:16, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/file_browser.cc: In constructor ‘ost::gui::FileBrowser::FileBrowser(QWidget*)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/file_browser.cc:62:13: warning: ‘QDirModel::QDirModel(QObject*)’ is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 62 | model_(new QDirModel), | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/file_browser.cc:53: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/file_browser.cc: In constructor ‘ost::gui::FileBrowser::FileBrowser(const QString&, QWidget*)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/file_browser.cc:102:13: warning: ‘QDirModel::QDirModel(QObject*)’ is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 102 | model_(new QDirModel), | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/file_browser.cc:53: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/log_reader.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/log_reader.cc.o -MF CMakeFiles/ost_gui.dir/messages/log_reader.cc.o.d -o CMakeFiles/ost_gui.dir/messages/log_reader.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/messages/log_reader.cc /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.cc: In member function ‘void ost::gui::GLCanvas::HandleMouseMoveEvent(QMouseEvent*)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.cc:373:32: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 373 | if (event->buttons() & Qt::MidButton) { | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.cc:399:37: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 399 | } else if (event->buttons() & Qt::MidButton) { | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.cc: In member function ‘virtual void ost::gui::GLCanvas::wheelEvent(QWheelEvent*)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.cc:488:50: warning: ‘int QWheelEvent::delta() const’ is deprecated: Use angleDelta() [-Wdeprecated-declarations] 488 | 0.2*static_cast(-event->delta())); | ~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QMouseEvent:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:25, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_canvas.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here 219 | inline int delta() const { return qt4D; } | ^~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_options_win.hh:27, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main.cc:31: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main.cc: In static member function ‘static QSize ost::gui::GostyMainWindow::GetDefaultSize()’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main.cc:59:64: warning: ‘const QRect QDesktopWidget::availableGeometry(int) const’ is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 59 | QRect desktop_geom=QApplication::desktop()->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main.cc:35: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gl_canvas.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_win.cc:25: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gl_win.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/align_properties_painter.cc [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/base_row.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_menu.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/background_painter.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/messages/message_widget.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/conservation_painter.cc [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/secstr_row.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/seq_secstr_painter.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/messages/message_box_widget.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_pdb_io.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_pdb_io.cc.o -MF CMakeFiles/_ost_io.dir/export_pdb_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/export_pdb_io.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/seq_selection_painter.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/seq_text_painter.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_delegate.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/export_pdb_io.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_model.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_row.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_search_bar.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_table_view.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_viewer.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/tick_painter.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/title_row.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/alignment_view_object.cc /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_table_view.cc: In member function ‘virtual int ost::gui::SequenceTableView::sizeHintForColumn(int) const’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_table_view.cc:480:35: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 480 | return this->fontMetrics().width('W'); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/qpainter.h:59, from /usr/include/x86_64-linux-gnu/qt5/QtGui/QPainter:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/painter.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/base_row.hh:27, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/base_view_object.hh:27, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_model.hh:35, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_delegate.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_table_view.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_table_view.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_viewer.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/base_view_object.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_view_object.cc [ 83%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -MF CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/export_mmcif_io.cc /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_viewer.cc: In member function ‘void ost::gui::SequenceViewer::MouseWheelEvent(QWheelEvent*)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_viewer.cc:298:27: warning: ‘int QWheelEvent::delta() const’ is deprecated: Use angleDelta() [-Wdeprecated-declarations] 298 | int delta = event->delta(); | ~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QWheelEvent:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_table_view.hh:32, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_viewer.cc:42: /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here 219 | inline int delta() const { return qt4D; } | ^~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_viewer.cc:299:25: warning: ‘Qt::Orientation QWheelEvent::orientation() const’ is deprecated: Use angleDelta() [-Wdeprecated-declarations] 299 | if (event->orientation() == Qt::Vertical) { | ~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QWheelEvent:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_table_view.hh:32, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/sequence_viewer/sequence_viewer.cc:42: /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:222:28: note: declared here 222 | inline Qt::Orientation orientation() const { return qt4O; } | ^~~~~~~~~~~ [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o -MF CMakeFiles/ost_gui.dir/gosty_app.cc.o.d -o CMakeFiles/ost_gui.dir/gosty_app.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gosty_app.cc [ 84%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_omf_io.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_omf_io.cc.o -MF CMakeFiles/_ost_io.dir/export_omf_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_omf_io.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/export_omf_io.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_area.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/main_area.cc.o -MF CMakeFiles/ost_gui.dir/main_area.cc.o.d -o CMakeFiles/ost_gui.dir/main_area.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/main_area.cc [ 84%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_map_io.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_map_io.cc.o -MF CMakeFiles/_ost_io.dir/export_map_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_map_io.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/export_map_io.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_state_saver.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_state_saver.cc.o -MF CMakeFiles/ost_gui.dir/widget_state_saver.cc.o.d -o CMakeFiles/ost_gui.dir/widget_state_saver.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/widget_state_saver.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o -MF CMakeFiles/ost_gui.dir/scene_selection.cc.o.d -o CMakeFiles/ost_gui.dir/scene_selection.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_selection.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/export_omf_io.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gosty_app.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o -MF CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o.d -o CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/widget_geom_handler.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/export_mmcif_io.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh:27, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gosty_app.cc:23: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gosty_app.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_loader.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_loader.cc.o -MF CMakeFiles/ost_gui.dir/file_loader.cc.o.d -o CMakeFiles/ost_gui.dir/file_loader.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/file_loader.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_bar.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/button_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/button_bar.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/button_bar.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/drop_box.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/drop_box.cc.o -MF CMakeFiles/ost_gui.dir/panels/drop_box.cc.o.d -o CMakeFiles/ost_gui.dir/panels/drop_box.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/drop_box.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gosty_app.cc:31: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gosty_app.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/export_map_io.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/panel_bar.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_selection.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/bottom_bar.cc /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o -MF CMakeFiles/ost_gui.dir/panels/button_box.cc.o.d -o CMakeFiles/ost_gui.dir/panels/button_box.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/button_box.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/event_button.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/event_button.cc.o -MF CMakeFiles/ost_gui.dir/panels/event_button.cc.o.d -o CMakeFiles/ost_gui.dir/panels/event_button.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/event_button.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/panel_manager.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/panel_widget_container.cc /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/event_button.cc: In member function ‘virtual void ost::gui::EventButton::mouseMoveEvent(QMouseEvent*)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/event_button.cc:50:15: warning: ‘Qt::DropAction QDrag::start(Qt::DropActions)’ is deprecated: Use QDrag::exec() instead [-Wdeprecated-declarations] 50 | drag->start(Qt::MoveAction); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QDrag:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/event_button.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtGui/qdrag.h:79:20: note: declared here 79 | Qt::DropAction start(Qt::DropActions supportedActions = Qt::CopyAction); | ^~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/panel_bar_widget_holder.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/side_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/side_bar.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_selection.cc:34: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_selection.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/splitter_panel_bar.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/file_loader.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/tabbed_panel_bar.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_option_group.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/panel_bar.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_options.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_options.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_options.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_option.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_option.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_option.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_manager.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/file_loader.cc:51: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/file_loader.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/panel_bar_widget_holder.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_options_win.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_manager.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_manager.cc:19: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_manager.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_manager.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/panels/tabbed_panel_bar.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o -MF CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o.d -o CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/mouse_event.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o -MF CMakeFiles/ost_gui.dir/tools/manipulator.cc.o.d -o CMakeFiles/ost_gui.dir/tools/manipulator.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/manipulator.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_options_widget.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_bar.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/selection_tool.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool.cc:19: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/measure_tool.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/gutter.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/mouse_event.cc:19: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/mouse_event.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/main_thread_runner.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/selection_tool.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/selection_tool.cc:22: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/selection_tool.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/selection_tool.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_options_win.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/output_redirector.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/completer_base.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/manipulator.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/measure_tool.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/measure_tool.cc:22: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/measure_tool.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/measure_tool.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh:27, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_options_win.cc:21: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_options_win.cc:20: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/output_redirector.cc: In member function ‘void ost::gui::OutputRedirector::Write(const String&)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/output_redirector.cc:42:22: warning: ‘int QTime::elapsed() const’ is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 42 | if(timer_.elapsed()>1000){ | ~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/output_redirector.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:237:54: note: declared here 237 | QT_DEPRECATED_X("Use QElapsedTimer instead") int elapsed() const; | ^~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/output_redirector.cc:46:21: warning: ‘int QTime::restart()’ is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 46 | timer_.restart(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/output_redirector.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:236:54: note: declared here 236 | QT_DEPRECATED_X("Use QElapsedTimer instead") int restart(); | ^~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/output_redirector.cc:52:17: warning: ‘void QTime::start()’ is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 52 | timer_.start(); | ~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/output_redirector.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:235:55: note: declared here 235 | QT_DEPRECATED_X("Use QElapsedTimer instead") void start(); | ^~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/dir_model.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/path_completer.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_context_parser.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/gutter.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/manipulator.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/manipulator.cc:29: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/manipulator.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_completer.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_bar.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/dir_model.cc: In constructor ‘ost::gui::OstDirModel::OstDirModel(QObject*)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/dir_model.cc:31:18: warning: ‘QDirModel::QDirModel(QObject*)’ is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 31 | QDirModel(parent) | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/dir_model.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/dir_model.cc:23: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter_worker.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_namespace_tree_model.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_namespace_tree_item.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/main_thread_runner.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_bar.cc:22: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/tool_bar.cc:20: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_text_document_layout.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_tokenizer.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_syntax_highlighter.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_namespace_tree_item.hh:25, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_namespace_tree_item.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_namespace_tree_model.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/shell_history.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter_worker.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/string_literal_positions.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/text_logger.cc /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.cc: In constructor ‘ost::gui::PythonShellWidget::PythonShellWidget(QWidget*)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.cc:79:34: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 79 | setTabStopWidth(2*metrics.width(" ")); | ~~~~~~~~~~~~~^~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qframe.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qabstractscrollarea.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtextedit.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.hh:34, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.cc:79:18: warning: ‘void QPlainTextEdit::setTabStopWidth(int)’ is deprecated [-Wdeprecated-declarations] 79 | setTabStopWidth(2*metrics.width(" ")); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.hh:34, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:179:24: note: declared here 179 | QT_DEPRECATED void setTabStopWidth(int width); | ^~~~~~~~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.cc: In member function ‘void ost::gui::PythonShellWidget::SetTabWidth(int)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.cc:537:43: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 537 | setTabStopWidth(tab_width_*metrics.width(" ")); | ~~~~~~~~~~~~~^~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qframe.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qabstractscrollarea.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtextedit.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.hh:34, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.cc:537:18: warning: ‘void QPlainTextEdit::setTabStopWidth(int)’ is deprecated [-Wdeprecated-declarations] 537 | setTabStopWidth(tab_width_*metrics.width(" ")); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.hh:34, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:179:24: note: declared here 179 | QT_DEPRECATED void setTabStopWidth(int width); | ^~~~~~~~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_namespace_tree_model.cc: In member function ‘virtual Qt::ItemFlags ost::gui::PythonNamespaceTreeModel::flags(const QModelIndex&) const’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_namespace_tree_model.cc:110:12: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::ItemFlag; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 110 | return 0; | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_namespace_tree_model.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/state_machine.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/state.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/state.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/state.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/transition.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/transition.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/transition.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/transition_guard.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/context_menu.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/current_selection_node.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/custom_part_node.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/scene_node.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/label_node.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/entity_node.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/transition.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/text_logger.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/transition_guard.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/transition_guard.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/transition.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/python_shell/state.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/entity_part_node.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/entity_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/gfx_scene_node.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/current_selection_node.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/render_mode_node.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/render_modes_node.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/root_node.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/scene_win.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/scene_win_model.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/map_tool.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/map_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/map_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/map_tool.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/map_tool.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/argand.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/scene_win.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/render_modes_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/draw_overlay.cc /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/scene_win.cc: In member function ‘void ost::gui::SceneWin::RowsInserted(const QModelIndex&, int, int)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/scene_win.cc:117:31: warning: ‘QModelIndex QModelIndex::child(int, int) const’ is deprecated: Use QAbstractItemModel::index [-Wdeprecated-declarations] 117 | model->select(parent.child(start,0),QItemSelectionModel::ClearAndSelect|QItemSelectionModel::Rows); | ~~~~~~~~~~~~^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QModelIndex:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh:34, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/scene_win.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qabstractitemmodel.h:455:20: note: declared here 455 | inline QModelIndex QModelIndex::child(int arow, int acolumn) const | ^~~~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/scene_win_model.cc: In member function ‘virtual QMimeData* ost::gui::SceneWinModel::mimeData(const QModelIndexList&) const’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/scene_win_model.cc:231:26: warning: ‘QByteArray& QByteArray::append(const QString&)’ is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 231 | encoded_data.append(text); | ~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qobject.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QObject:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/scene_win_model.hh:34, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/scene_win/scene_win_model.cc:23: /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1507:20: note: declared here 1507 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/drawing_functions.cc /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function ‘virtual void ost::img::gui::DataViewerPanelBase::paintEvent(QPaintEvent*)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc:440:56: warning: ‘static bool QPixmapCache::find(const QString&, QPixmap&)’ is deprecated: Use bool find(const QString &, QPixmap *) instead [-Wdeprecated-declarations] 440 | if (update_raster_image_ || ( !QPixmapCache::find(cache_key, pm))) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QPixmapCache:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc:40: /usr/include/x86_64-linux-gnu/qt5/QtGui/qpixmapcache.h:81:17: note: declared here 81 | static bool find(const QString &key, QPixmap &pixmap); | ^~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function ‘virtual void ost::img::gui::DataViewerPanelBase::mouseMoveEvent(QMouseEvent*)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc:602:38: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 602 | } else if((event->buttons() == Qt::MidButton) && HasSelection()) { | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qobjectdefs.h:48, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qwindowdefs.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QWidget:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.hh:46, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc:34: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function ‘virtual void ost::img::gui::DataViewerPanelBase::wheelEvent(QWheelEvent*)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc:613:18: warning: ‘int QWheelEvent::delta() const’ is deprecated: Use angleDelta() [-Wdeprecated-declarations] 613 | if(event->delta()>0) { | ~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QResizeEvent:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc:36: /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here 219 | inline int delta() const { return qt4D; } | ^~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function ‘void ost::img::gui::DataViewerPanelBase::draw_pixel_values(QPainter&)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc:1074:49: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1074 | int string_w=painter.fontMetrics().width(value_string); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QWidget:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.hh:46, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc:34: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc:1090:49: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1090 | int string_w=painter.fontMetrics().width(value_string); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QWidget:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.hh:46, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer_panel_base.cc:34: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/fft_panel.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gfx/map_slab.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/map_tool.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/info_panel.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/img2qt.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/mask_overlay.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/map_tool.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/map_tool.cc:28: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/tools/map_tool.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/null_overlay.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/overlay_base.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer.cc:37: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/dock_widget.hh:38:77: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer.hh:37, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer.cc:41: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/overlay_manager.cc /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer.cc: In constructor ‘ost::img::gui::DataViewer::DataViewer(QWidget*, const ost::img::ImageHandle&, const QString&)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer.cc:75:14: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 75 | lastmouse_() | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer.cc: In member function ‘void ost::img::gui::DataViewer::build(const ost::img::ImageHandle&)’: /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer.cc:315:54: warning: ‘const QRect QDesktopWidget::availableGeometry(int) const’ is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 315 | resize(QApplication::desktop()->availableGeometry().adjusted(20,20,-20,-20).size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/data_viewer.cc:53: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/overlay_manager_gui.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/pointlist_overlay.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/pointlist_overlay_base.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/data_viewer/strategies.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o.d -o 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CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o CMakeFiles/ost_gui.dir/gosty_app.cc.o CMakeFiles/ost_gui.dir/main_area.cc.o CMakeFiles/ost_gui.dir/widget_state_saver.cc.o CMakeFiles/ost_gui.dir/scene_selection.cc.o CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o CMakeFiles/ost_gui.dir/file_loader.cc.o CMakeFiles/ost_gui.dir/panels/button_bar.cc.o CMakeFiles/ost_gui.dir/panels/drop_box.cc.o CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o CMakeFiles/ost_gui.dir/panels/button_box.cc.o CMakeFiles/ost_gui.dir/panels/event_button.cc.o CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o 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CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o CMakeFiles/ost_gui.dir/python_shell/state.cc.o CMakeFiles/ost_gui.dir/python_shell/transition.cc.o CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o CMakeFiles/ost_gui.dir/tools/map_tool.cc.o CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_gfx.so.2.3.1 ../../../stage/lib/libost_io.so.2.3.1 ../../../stage/lib/libost_mol_alg.so.2.3.1 ../../../stage/lib/libost_seq_alg.so.2.3.1 /usr/lib/x86_64-linux-gnu/libGL.so /usr/lib/x86_64-linux-gnu/libGLU.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_conop.so.2.3.1 ../../../stage/lib/libost_db.so.2.3.1 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.3.1 ../../../stage/lib/libost_mol.so.2.3.1 ../../../stage/lib/libost_img_alg.so.2.3.1 ../../../stage/lib/libost_img.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gui.so.2.3.1 ../../../stage/lib/libost_gui.so.2.3 ../../../stage/lib/libost_gui.so make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 94%] Built target ost_gui make -f modules/gui/src/CMakeFiles/gosty.dir/build.make modules/gui/src/CMakeFiles/gosty.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 94%] Generating qrc_dngr.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/rcc --name dngr --output /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/qrc_dngr.cpp /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/dngr.qrc [ 94%] Generating moc_gosty.cpp cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty.cpp_parameters cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/gosty.dir/build.make modules/gui/src/CMakeFiles/gosty.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 94%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o -MF CMakeFiles/gosty.dir/moc_gosty.cpp.o.d -o CMakeFiles/gosty.dir/moc_gosty.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty.cpp [ 94%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/gosty.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/gosty.cc.o -MF CMakeFiles/gosty.dir/gosty.cc.o.d -o CMakeFiles/gosty.dir/gosty.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gosty.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o -MF CMakeFiles/gosty.dir/qrc_dngr.cpp.o.d -o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src/qrc_dngr.cpp [ 94%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/io/_ost_io.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_io.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/io/_ost_io.so CMakeFiles/_ost_io.dir/wrap_io.cc.o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o CMakeFiles/_ost_io.dir/export_omf_io.cc.o CMakeFiles/_ost_io.dir/export_map_io.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_mol_alg.so.2.3.1 ../../../stage/lib/libost_conop.so.2.3.1 ../../../stage/lib/libost_db.so.2.3.1 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.3.1 ../../../stage/lib/libost_seq.so.2.3.1 ../../../stage/lib/libost_mol.so.2.3.1 ../../../stage/lib/libost_img_alg.so.2.3.1 ../../../stage/lib/libost_img.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/io/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/remote.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/io/./remote.pyc\",\"remote.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/io/pymod/repository.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/io/./repository.pyc\",\"repository.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 94%] Built target _ost_io make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend make -f modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build.make modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build.make modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 94%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/wrap_gui.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/wrap_gui.cc.o -MF CMakeFiles/_ost_gui.dir/wrap_gui.cc.o.d -o CMakeFiles/_ost_gui.dir/wrap_gui.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/wrap_gui.cc [ 94%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_message_widget.cc.o [ 94%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_tool.cc.o [ 94%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gosty.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_message_widget.cc.o -MF CMakeFiles/_ost_gui.dir/export_message_widget.cc.o.d -o CMakeFiles/_ost_gui.dir/export_message_widget.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_message_widget.cc [ 94%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_tool.cc.o -MF CMakeFiles/_ost_gui.dir/export_tool.cc.o.d -o CMakeFiles/_ost_gui.dir/export_tool.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_tool.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gosty.cc.o -MF CMakeFiles/_ost_gui.dir/export_gosty.cc.o.d -o CMakeFiles/_ost_gui.dir/export_gosty.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_gosty.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_forcefield.cc [ 94%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o [ 94%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_settings.cc [ 94%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_py_shell.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o -MF CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o.d -o CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_alignment_view.cc cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_py_shell.cc.o -MF CMakeFiles/_ost_gui.dir/export_py_shell.cc.o.d -o CMakeFiles/_ost_gui.dir/export_py_shell.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_py_shell.cc [ 94%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_win.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_win.cc.o -MF CMakeFiles/_ost_gui.dir/export_gl_win.cc.o.d -o CMakeFiles/_ost_gui.dir/export_gl_win.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_gl_win.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/src/gosty.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_message_widget.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable ../../../stage/lib/openstructure/libexec/gosty cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gosty.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/gosty.dir/gosty.cc.o CMakeFiles/gosty.dir/moc_gosty.cpp.o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -o ../../../stage/lib/openstructure/libexec/gosty -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_gui.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_gfx.so.2.3.1 /usr/lib/x86_64-linux-gnu/libGL.so /usr/lib/x86_64-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.3.1 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.3.1 ../../../stage/lib/libost_conop.so.2.3.1 ../../../stage/lib/libost_db.so.2.3.1 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.3.1 ../../../stage/lib/libost_img.so.2.3.1 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.3.1 ../../../stage/lib/libost_seq.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_forcefield.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_gl_win.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_gosty.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_py_shell.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_tool.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [ 96%] Built target gosty [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -MF CMakeFiles/_ost_gui.dir/export_scene_win.cc.o.d -o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_scene_win.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_settings.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/wrap_gui.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_tool.cc:25: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_tool.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_alignment_view.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh:27, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_gosty.cc:30: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_gosty.cc:24: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_sequence_viewer.cc [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_perspective.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_perspective.cc.o -MF CMakeFiles/_ost_gui.dir/export_perspective.cc.o.d -o CMakeFiles/_ost_gui.dir/export_perspective.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_perspective.cc [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o -MF CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o.d -o CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_sip_handler.cc [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o -MF CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o.d -o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_scene_selection.cc In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/data_viewer_proxy.hh:41, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_gosty.cc:38: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_gosty.cc:24: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_scene_win.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_main_area.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_main_area.cc.o -MF CMakeFiles/_ost_gui.dir/export_main_area.cc.o.d -o CMakeFiles/_ost_gui.dir/export_main_area.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_main_area.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_perspective.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_scene_selection.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_sip_handler.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_sequence_viewer.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_panels.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_panels.cc.o -MF CMakeFiles/_ost_gui.dir/export_panels.cc.o.d -o CMakeFiles/_ost_gui.dir/export_panels.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_panels.cc [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o -MF CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o.d -o CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_menu_bar.cc [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_loader.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_loader.cc.o -MF CMakeFiles/_ost_gui.dir/export_file_loader.cc.o.d -o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_file_loader.cc [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_file_viewer.cc [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_widget.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_widget.cc.o -MF CMakeFiles/_ost_gui.dir/export_widget.cc.o.d -o CMakeFiles/_ost_gui.dir/export_widget.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_widget.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o -MF CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o.d -o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_gl_canvas.cc [ 98%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_simulation.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_main_area.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_panels.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_menu_bar.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_openmm.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_widget.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_gl_canvas.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_simulation.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -MF CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o.d -o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/data_viewer_proxy.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_file_viewer.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gl_canvas.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_gl_canvas.cc:21: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/gl_canvas.hh:23, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_gl_canvas.cc:21: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_openmm.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_file_loader.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_data_viewer.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o -MF CMakeFiles/_ost_gui.dir/export_overlay.cc.o.d -o CMakeFiles/_ost_gui.dir/export_overlay.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_overlay.cc [ 98%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_observers.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -MF CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o.d -o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_overlay_manager.cc [100%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_ff_reader.cc [100%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_interaction.cc [100%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_buildingblock.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/sip_handler.hh:22, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/data_viewer_proxy.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/data_viewer_proxy.cc:26: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_data_viewer.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_block_modifiers.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_overlay_manager.cc:16: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_observers.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/data_viewer_proxy.hh:41, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/data_viewer_proxy.cc:26: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QWidget:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/sip_handler.hh:24, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/data_viewer_proxy.hh:30, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/data_viewer_proxy.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_data_viewer.cc:27: /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:35, from /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_data_viewer.cc:27: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/export_overlay.cc:26: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_interaction.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_topology.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_ff_reader.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_buildingblock.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_modeller.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_block_modifiers.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o -MF CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o -c /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/wrap_mol_mm.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_topology.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/wrap_mol_mm.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/gui/_ost_gui.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/presets.xml /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/scene/presets.xml cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/icons/color_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/color_icon.png cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/icons/preset_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/preset_icon.png cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/icons/render_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/render_icon.png cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/icons/tool_icon.png /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/tool_icon.png cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gui.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/gui/_ost_gui.so CMakeFiles/_ost_gui.dir/wrap_gui.cc.o CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o CMakeFiles/_ost_gui.dir/export_message_widget.cc.o CMakeFiles/_ost_gui.dir/export_gl_win.cc.o CMakeFiles/_ost_gui.dir/export_tool.cc.o CMakeFiles/_ost_gui.dir/export_py_shell.cc.o CMakeFiles/_ost_gui.dir/export_gosty.cc.o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o CMakeFiles/_ost_gui.dir/export_perspective.cc.o CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o CMakeFiles/_ost_gui.dir/export_main_area.cc.o CMakeFiles/_ost_gui.dir/export_panels.cc.o CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o CMakeFiles/_ost_gui.dir/export_widget.cc.o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o CMakeFiles/_ost_gui.dir/export_overlay.cc.o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_gui.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_gfx.so.2.3.1 /usr/lib/x86_64-linux-gnu/libGL.so /usr/lib/x86_64-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.3.1 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.3.1 ../../../stage/lib/libost_conop.so.2.3.1 ../../../stage/lib/libost_db.so.2.3.1 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.3.1 ../../../stage/lib/libost_img.so.2.3.1 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.3.1 ../../../stage/lib/libost_seq.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.3.1 ../../../stage/lib/libost_info.so.2.3.1 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.3.1 ../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/export_modeller.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/color_options_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/color_options_widget.pyc\",\"color_options_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/color_select_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/color_select_widget.pyc\",\"color_select_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/combo_options_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/combo_options_widget.pyc\",\"combo_options_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/cpk_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/cpk_widget.pyc\",\"cpk_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/custom_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/custom_widget.pyc\",\"custom_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/gradient_editor_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_editor_widget.pyc\",\"gradient_editor_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/gradient_info_handler.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_info_handler.pyc\",\"gradient_info_handler.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/gradient_list_model.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_list_model.pyc\",\"gradient_list_model.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/gradient_preset_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_preset_widget.pyc\",\"gradient_preset_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/hsc_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/hsc_widget.pyc\",\"hsc_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/immutable_gradient_info_handler.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/immutable_gradient_info_handler.pyc\",\"immutable_gradient_info_handler.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/immutable_preset_info_handler.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/immutable_preset_info_handler.pyc\",\"immutable_preset_info_handler.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/init_inspector.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/init_inspector.pyc\",\"init_inspector.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/inspector_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/inspector_widget.pyc\",\"inspector_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/map_level_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/map_level_widget.pyc\",\"map_level_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/preset.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset.pyc\",\"preset.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/remote.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/remote.pyc\",\"remote.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/preset_editor_list_model.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_editor_list_model.pyc\",\"preset_editor_list_model.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/preset_editor_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_editor_widget.pyc\",\"preset_editor_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/preset_info_handler.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_info_handler.pyc\",\"preset_info_handler.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/preset_list_model.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_list_model.pyc\",\"preset_list_model.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/preset_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_widget.pyc\",\"preset_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/render_mode_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/render_mode_widget.pyc\",\"render_mode_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/render_op.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/render_op.pyc\",\"render_op.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/render_options_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/render_options_widget.pyc\",\"render_options_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/scene_observer_impl.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/scene_observer_impl.pyc\",\"scene_observer_impl.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/scene_selection_helper.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/scene_selection_helper.pyc\",\"scene_selection_helper.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/simple_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/simple_widget.pyc\",\"simple_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/sline_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/sline_widget.pyc\",\"sline_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/toolbar_options_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/toolbar_options_widget.pyc\",\"toolbar_options_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/trace_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/trace_widget.pyc\",\"trace_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/tube_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/tube_widget.pyc\",\"tube_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/uniform_color_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/uniform_color_widget.pyc\",\"uniform_color_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/visibility_op.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/visibility_op.pyc\",\"visibility_op.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/line_trace_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/line_trace_widget.pyc\",\"line_trace_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/wireframe_widget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/wireframe_widget.pyc\",\"wireframe_widget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/scene/query_editor.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/query_editor.pyc\",\"query_editor.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/dng/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/dng/termuse.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/termuse.pyc\",\"termuse.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/dng/superpositiondialog.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/superpositiondialog.pyc\",\"superpositiondialog.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/dng/init.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/init.pyc\",\"init.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/dng/menu.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/menu.pyc\",\"menu.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/init_context_menu.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_context_menu.pyc\",\"init_context_menu.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/init_menubar.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_menubar.pyc\",\"init_menubar.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/init_spacenav.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_spacenav.pyc\",\"init_spacenav.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/init_splash.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_splash.pyc\",\"init_splash.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/trajectory_viewer.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./trajectory_viewer.pyc\",\"trajectory_viewer.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/helpwidget.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./helpwidget.pyc\",\"helpwidget.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/table.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./table.pyc\",\"table.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/gui/pymod/gosty_startup.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./gosty_startup.pyc\",\"gosty_startup.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [100%] Built target _ost_gui make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-IPKzyM/openstructure-2.3.1 /build/openstructure-IPKzyM/openstructure-2.3.1/scripts /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/build make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_config /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost_config cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/bin/ost cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different dng /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/bin/dng cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_startup.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/ost_startup.py cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/openstructure-IPKzyM/openstructure-2.3.1/scripts/dng_startup.py /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/dng_startup.py make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [100%] Built target ost_scripts [100%] Linking CXX shared module ../../../../stage/lib/python3.10/dist-packages/ost/mol/mm/_ost_mol_mm.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol_mm.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-IPKzyM/openstructure-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.10/dist-packages/ost/mol/mm/_ost_mol_mm.so CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o -L/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol_mm.so.2.3.1 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../../stage/lib/libost_io.so.2.3.1 ../../../../stage/lib/libost_mol_alg.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_program_options.so ../../../../stage/lib/libost_conop.so.2.3.1 ../../../../stage/lib/libost_db.so.2.3.1 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_seq_alg.so.2.3.1 ../../../../stage/lib/libost_seq.so.2.3.1 ../../../../stage/lib/libost_mol.so.2.3.1 ../../../../stage/lib/libost_img_alg.so.2.3.1 ../../../../stage/lib/libost_img.so.2.3.1 ../../../../stage/lib/libost_info.so.2.3.1 ../../../../stage/lib/libost_base.so.2.3.1 ../../../../stage/lib/libost_geom.so.2.3.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libOpenMM.so cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/__init__.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/mm/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/build/openstructure-IPKzyM/openstructure-2.3.1/modules/mol/mm/pymod/antechamber.py\",\"/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/mm/./antechamber.pyc\",\"antechamber.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' [100%] Built target _ost_mol_mm make[2]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1' dh_auto_install cd obj-x86_64-linux-gnu && make -j10 install DESTDIR=/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/openstructure-IPKzyM/openstructure-2.3.1 -B/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Debug" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_base.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_base.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_base.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_base.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/export_helper/generic_property_def.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/export_helper/pair_to_tuple_conv.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/export_helper/vec_to_list_conv.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/test_utils/compare_files.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./generic_property.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./integrity_error.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./invalid_handle.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./ptr_observer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./log.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./log_sink.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./profile.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./dyn_cast.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./stdint.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./stdint_msc.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./range.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./module_config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./units.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./message.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./platform.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./string_ref.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./pod_vector.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./fixed_string.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./tri_matrix.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./boost_filesystem_helper.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./paged_array.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/_ost_base.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/_ost_base.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/./settings.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/./stutil.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/./table.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/./table_selector.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/./xmlrunner.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/./testutils.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/./settings.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/./stutil.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/./table.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/./table_selector.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/./xmlrunner.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/./testutils.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_bindings.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_bindings.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_bindings.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_bindings.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/bindings/./wrap_tmalign.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/_ost_bindings.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/_ost_bindings.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./lga.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hbplus.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./msms.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./tmtools.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./dssp.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./clustalw.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./utils.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./naccess.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hhblits.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hhblits2.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hhblits3.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./blast.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./cadscore.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./kclust.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./ialign.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./mmseqs2.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./lga.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hbplus.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./msms.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./tmtools.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./dssp.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./clustalw.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./utils.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./naccess.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hhblits.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hhblits2.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hhblits3.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./blast.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./cadscore.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./kclust.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./ialign.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./mmseqs2.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./dllexport.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/./version.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_conop.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_conop.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_conop.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_conop.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/conop/./conop.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/conop/./processor.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/conop/./amino_acids.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/conop/./diag.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/conop/./model_check.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/conop/./heuristic.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/conop/./compound.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/conop/./compound_lib.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/conop/./module_config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/conop/./rule_based.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/conop/./minimal_compound_lib.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/conop/./compound_lib_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/conop/./ring_finder.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/bin/chemdict_tool -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/bin/chemdict_tool" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/conop/_ost_conop.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/conop/_ost_conop.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/conop/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/conop/./cleanup.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/conop/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/conop/./cleanup.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_db.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_db.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_db.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_db.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/db/./sqlite_wrap.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/db/./sqlite_conv.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/db/./module_config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/db/./linear_indexer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/db/./binary_container.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/db/./extract_data_helper.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/db/_ost_db.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/db/_ost_db.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/db/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/db/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_geom.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_geom.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_geom.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_geom.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/export_helper/vector.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./def.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./exc.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./geom.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./mat.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./mat2.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./mat3.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./mat4.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./vec.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./vec2.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./vec3.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./vec4.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./vecmat_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./vecmat2_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./vecmat3_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./vecmat4_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./circular_iterator.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./constants.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./composite.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./composite2.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./composite3.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./composite_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./composite2_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./composite3_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./aligned_cuboid.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./vec_mat_predicates.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./quat.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./transform.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./point_cloud.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/geom/./module_config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/geom/_ost_geom.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/geom/_ost_geom.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/geom/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/geom/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_gfx.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_gfx.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_gfx.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_gfx.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/map_iso_gen.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/map_iso_gen_s.hh -- Up-to-date: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/map_iso_gen_s.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/map_iso_spec.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/map_octree.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/octree_isocont.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/cartoon_renderer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/custom_renderer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/cpk_renderer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/debug_renderer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/simple_renderer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/sline_renderer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/trace_renderer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/line_trace_renderer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/backbone_trace.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/entity_detail.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/entity_renderer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/trace_renderer_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/connect_renderer_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/mapped_property.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/entity_renderer_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/tabulated_trig.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/impl/fast_spheres.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/render_options/render_options.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/render_options/line_render_options.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/render_options/custom_render_options.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/render_options/cpk_render_options.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/render_options/simple_render_options.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/render_options/sline_render_options.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/render_options/line_trace_render_options.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/render_options/cartoon_render_options.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/render_options/trace_render_options.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/color_ops/color_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/color_ops/by_element_color_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/color_ops/by_chain_color_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/color_ops/uniform_color_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/color_ops/gradient_color_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/color_ops/entity_view_color_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/color_ops/basic_gradient_color_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/color_ops/gradient_level_color_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/color_ops/map_handle_color_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./render_pass.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./bitmap_io.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./collada_exporter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./color.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./entity.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./entity_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gl_helper.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gfx.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gfx_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gfx_node.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gfx_node_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gfx_node_visitor.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gfx_object_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gfx_object.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gfx_object_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gfx_prim.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./symmetry_node.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gfx_test_object.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./glwin_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./input.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./prim_list.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./scene.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./selection.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./surface.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./texture.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./vertex_array.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./vertex_array_helper.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./scene_observer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gl_include.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./glext_include.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./render_mode.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./material.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gradient.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gradient_manager.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./module_config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./primitives.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./povray_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./povray.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./exporter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./exporter_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./gost_exporter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./map_handle_color_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./map_iso.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./map_slab.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gfx/./map_iso_prop.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/textures/test_texture.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/textures/glyph_texture.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gfx/_ost_gfx.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gfx/_ost_gfx.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gfx/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gfx/./py_gfx_obj.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gfx/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gfx/./py_gfx_obj.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/scene/gradients.xml -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_gui.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_gui.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_gui.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_gui.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/tools/tool.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/tools/tool_option_group.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/tools/tool_options.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/tools/tool_bar.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/tools/selection_tool.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/tools/measure_tool.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/tools/tool_option.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/tools/tool_manager.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/tools/tool_options_widget.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/tools/manipulator.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/tools/tool_options_win.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/tools/mouse_event.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/tools/map_tool.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/align_properties_painter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/base_row.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/background_painter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/conservation_painter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/painter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/secstr_row.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/seq_secstr_painter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/seq_selection_painter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/seq_text_painter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_delegate.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_model.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_row.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_search_bar.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_table_view.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_viewer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/tick_painter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/title_row.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/alignment_view_object.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/base_view_object.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_view_object.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/main_thread_runner.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/output_redirector.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/completer_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/dir_model.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/gutter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/path_completer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/python_context_parser.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/python_completer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/python_shell.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/python_shell_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/python_shell_widget.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/python_tokenizer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/python_syntax_highlighter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/text_logger.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/python_interpreter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/python_interpreter_worker.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/python_shell_text_document_layout.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/shell_history.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/state_machine.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/state.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/transition.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/python_shell/transition_guard.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/panels/button_bar.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/panels/drop_box.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/panels/panel_bar.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/panels/panel_manager.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/panels/bottom_bar.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/panels/button_box.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/panels/event_button.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/panels/panel_widget_container.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/panels/panel_bar_widget_holder.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/panels/side_bar.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/panels/splitter_panel_bar.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/panels/tabbed_panel_bar.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/scene_win/context_menu.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/scene_win/current_selection_node.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/scene_win/custom_part_node.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/scene_win/entity_node.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/scene_win/entity_part_node.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/scene_win/gfx_scene_node.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/scene_win/label_node.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/scene_win/root_node.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/scene_win/render_mode_node.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/scene_win/render_modes_node.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/scene_win/scene_node.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/scene_win/scene_win.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/scene_win/scene_win_model.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/messages/message_widget.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/messages/message_box_widget.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/messages/log_reader.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/argand.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/data_viewer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/data_viewer_panel.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/data_viewer_panel_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/draw_overlay.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/drawing_functions.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/fft_panel.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/info_panel.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/img2qt.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/mask_overlay.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/null_overlay.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/overlay.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/overlay_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/overlay_base_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager_gui.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager_observer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/pointlist_overlay.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/pointlist_overlay_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/strategies.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/strategies_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/data_viewer/viewer_normalizer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./file_browser.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./file_type_dialog.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./file_viewer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./gl_canvas.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./gl_win.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./scene_menu.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./gosty_app.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./admin.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./module_config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./main.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./main_area.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./perspective.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./scene_selection.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./main_window.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./dock_widget.hh -- Up-to-date: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./dock_widget.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./thin_splitter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./widget.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./widget_geom_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./widget_pool.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./widget_registry.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./widget_state_saver.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/gui/./file_loader.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/openstructure/libexec/gosty -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/openstructure/libexec/gosty" to "$ORIGIN/../../lib" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/add_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/close_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/critical_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/delete_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/distance_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/find_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/information_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/map_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/menubar_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/rigid_body_manipulator_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/selection_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/show_sidebar_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/site_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/split_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/warning_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/icons/refresh.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/gui/images/logo-small.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/_ost_gui.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/_ost_gui.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/color_options_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/color_select_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/combo_options_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/cpk_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/custom_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_editor_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_info_handler.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_list_model.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_preset_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/hsc_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/immutable_gradient_info_handler.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/immutable_preset_info_handler.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/init_inspector.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/inspector_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/map_level_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/remote.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_editor_list_model.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_editor_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_info_handler.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_list_model.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/render_mode_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/render_op.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/render_options_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/scene_observer_impl.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/scene_selection_helper.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/simple_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/sline_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/toolbar_options_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/trace_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/tube_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/uniform_color_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/visibility_op.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/line_trace_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/wireframe_widget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/query_editor.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/color_options_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/color_select_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/combo_options_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/cpk_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/custom_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_editor_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_info_handler.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_list_model.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_preset_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/hsc_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/immutable_gradient_info_handler.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/immutable_preset_info_handler.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/init_inspector.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/inspector_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/map_level_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/remote.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_editor_list_model.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_editor_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_info_handler.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_list_model.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/render_mode_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/render_op.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/render_options_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/scene_observer_impl.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/scene_selection_helper.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/simple_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/sline_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/toolbar_options_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/trace_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/tube_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/uniform_color_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/visibility_op.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/line_trace_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/wireframe_widget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/query_editor.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/termuse.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/superpositiondialog.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/init.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/menu.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/termuse.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/superpositiondialog.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/init.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/menu.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_context_menu.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_menubar.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_spacenav.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_splash.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./trajectory_viewer.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./helpwidget.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./table.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./gosty_startup.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_context_menu.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_menubar.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_spacenav.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_splash.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./trajectory_viewer.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./helpwidget.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./table.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./gosty_startup.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/scene/presets.xml -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/scene/icons/color_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/scene/icons/preset_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/scene/icons/render_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/scene/icons/tool_icon.png -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_img.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_img.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_img.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_img.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/raster_image/raster_image.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/dispatch.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/image_state.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/image_state_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/image_state_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/image_state_base_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/image_state_def.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/image_state_factory.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/image_state_frequency_domain.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/image_state_half_frequency_domain.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/image_state_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/image_state_spatial_domain.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/image_state_visitor.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/image_state_algorithm.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/image_state_visitor_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/index.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/type_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/image_state/value_holder.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./algorithm.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./circle_mask.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./composite_mask.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./data_algorithm.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./data_observer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./data_types.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./data.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./debug.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./dllexport.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./extent_iterator.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./extent_mask.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./extent.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./image_factory.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./image_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./image_handle_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./image_handle.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./image_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./image_list.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./image_state_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./image_state.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./image.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./inverted_mask.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./map.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./mask_base_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./mask_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./mask_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./mask_visitor.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./mask.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./module_config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./normalizer_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./normalizer_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./null_data.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./observable.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./paste_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./peak.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./phase.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./physical_units.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./pixel_sampling.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./point_list.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./point.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./polygon_mask.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./progress.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./size.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./spherical_mask.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./util.cc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./util.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./value_util.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./vecmat.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/./mask_info_convert.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/_ost_img.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/_ost_img.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_img_alg.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_img_alg.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_img_alg.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_img_alg.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./anisotropic.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./auto_correlate.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./clear.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./clip_min_max.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./conjugate.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./convolute.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./correlate.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./cross_correlate.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./density_slice.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./dft.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./fft.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./fftw_helper.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./fill.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./filter.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./fourier_filters.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./gaussian_gradient_magnitude.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./gaussian.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./gaussian_laplacian.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./highest_peak_search_3d.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./histogram.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./line_iterator.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./local_sigma_threshold.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./mask_image.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./negate.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./normalizer_factory.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./norm.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./normalizer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./norm_linear.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./norm_log.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./norm_od.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./power_spectrum.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./randomize.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./smooth_mask_image.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./stat.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./stat_accumulator.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./stat_min_max.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./threshold.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./transcendentals.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./transform.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./transform_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./alg_transform.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./alg_mirror.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./alg_shift.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./discrete_shrink.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./transformation_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./transformations.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./fractional_shift.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./module_config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./polar.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./line_average.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/img/alg/./rscrosscorr.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/alg/_ost_img_alg.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/alg/_ost_img_alg.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/alg/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/alg/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_info.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_info.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_info.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_info.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./info.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./info_error.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./info_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./info_impl_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./info_handle.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./info_group.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./info_item.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./info_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./module_config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./info_path.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./info_set.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./info_visitor.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./info_verbose_visitor.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./item_type.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./geom_info_conversion.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/info/./item_type_cast.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/info/_ost_info.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/info/_ost_info.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/info/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/info/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_io.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_io.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_io.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_io.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/chemdict_parser.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/star_parser.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/mmcif_reader.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/mmcif_info.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/io_profile.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/dcd_io.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/entity_io_crd_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/entity_io_pqr_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/entity_io_mae_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/entity_io_mmcif_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/entity_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/pdb_reader.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/entity_io_pdb_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/pdb_writer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/entity_io_sdf_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/sdf_reader.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/sdf_writer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/save_entity.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/load_entity.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/surface_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/load_surface.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/surface_io_msms_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/pdb_str.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/stereochemical_params_reader.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/mol/omf.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/load_map.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/map_io_df3_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/image_format.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/map_io_dx_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/map_io_spi_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/map_io_situs_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/map_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/map_io_mrc_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/map_io_dat_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/map_io_ipl_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/map_io_jpk_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/map_io_nanoscope_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/map_io_png_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/map_io_dm3_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/map_io_tiff_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/tiff_util.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/img/jpk_util.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/seq/sequence_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/seq/fasta_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/seq/pir_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/seq/promod_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/seq/profile_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/seq/hhm_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/seq/pssm_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/seq/clustal_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/seq/load.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/seq/save.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./binary_data_sink.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./io_manager.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./binary_data_source.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./module_config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./container_serialization.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./swap_util.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./io_utils.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./io_exception.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./convert.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./converting_streams.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./formatted_line.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./chemdict_parser.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./star_parser.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./mmcif_reader.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./mmcif_info.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./io_profile.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./dcd_io.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./entity_io_crd_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./entity_io_pqr_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./entity_io_mae_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./entity_io_mmcif_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./entity_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./pdb_reader.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./entity_io_pdb_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./pdb_writer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./entity_io_sdf_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./sdf_reader.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./sdf_writer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./save_entity.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./load_entity.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./surface_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./load_surface.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./surface_io_msms_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./pdb_str.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./stereochemical_params_reader.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./omf.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./sequence_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./fasta_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./pir_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./promod_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./profile_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./hhm_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./pssm_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./clustal_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./load.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./save.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./load_map.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./map_io_df3_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./image_format.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./map_io_dx_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./map_io_spi_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./map_io_situs_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./map_io_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./map_io_mrc_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./map_io_dat_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./map_io_ipl_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./map_io_jpk_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./map_io_nanoscope_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./map_io_png_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./map_io_dm3_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./map_io_tiff_handler.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./tiff_util.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/io/./jpk_util.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/_ost_io.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/_ost_io.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/./remote.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/./repository.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/./remote.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/./repository.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_mol.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_mol.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_mol.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_mol.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/pointer_iterator.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/atom_group.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/atom_prop.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/atom_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/atom_impl_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/chain_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/chain_impl_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/connector_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/connector_impl_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/dihedral.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/entity_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/entity_impl_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/fragment_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/fragment_impl_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/query_ast.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/query_ast_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/query_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/query_impl_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/residue_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/residue_impl_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/surface_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/surface_impl_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/torsion_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/impl/torsion_impl_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./atom_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./atom_handle.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./atom_view.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./bond_handle.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./bond_table.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./chain_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./chain_handle.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./chain_view.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./chain_type.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./chem_class.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./chem_type.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./coord_group.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./coord_source.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./in_mem_coord_source.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./coord_frame.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./editor_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./editor_type_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./mol.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./entity_base.hh -- Up-to-date: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./entity_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./entity_handle.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./entity_observer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./entity_observer_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./entity_property_mapper.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./entity_view.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./entity_visitor.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./entity_visitor_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./handle_type_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./ics_editor.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./not_connected_error.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./property_id.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./query.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./query_error.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./query_state.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./residue_base.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./residue_handle.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./residue_prop.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./residue_view.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./sec_structure.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./spatial_organizer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./surface.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./surface_builder.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./builder.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./surface_handle.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./surface_prop.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./torsion_handle.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./transfer_connectivity.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./query_view_wrapper.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./view_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./view_type_fw.hh -- Up-to-date: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./view_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./xcs_editor.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./bounding_box.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./transform.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/./module_config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/_ost_mol.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/_ost_mol.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/bin/lddt -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/bin/lddt" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_mol_alg.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_mol_alg.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_mol_alg.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_mol_alg.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./svd_superpose.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./module_config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./sec_structure_segments.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./local_dist_diff_test.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./distance_test_common.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./distance_rmsd_test.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./superpose_frames.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./filter_clashes.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./construct_cbeta.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./clash_score.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./trajectory_analysis.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./structure_analysis.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./consistency_checks.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./pdbize.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./adjacency_bitmap.hh -- Up-to-date: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./consistency_checks.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./contact_overlap.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./domain_find.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./similarity_matrix.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./accessibility.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./sec_struct.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./nonstandard.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./molck.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./find_membrane.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/alg/./entity_to_density.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/atom_scattering_properties.txt -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/stereo_chemical_props.txt -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/_ost_mol_alg.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/_ost_mol_alg.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./views.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./superpose.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./qsscoring.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./trajectory_analysis.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./structure_analysis.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./helix_kinks.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./hbond.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./views.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./superpose.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./qsscoring.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./trajectory_analysis.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./structure_analysis.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./helix_kinks.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./hbond.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_mol_mm.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_mol_mm.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_mol_mm.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_mol_mm.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./forcefield.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./ff_reader.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./buildingblock.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./block_modifiers.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./gromacs_block_modifiers.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./heuristic_block_modifiers.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./interaction.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./settings.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./simulation.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./modeller.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./observer.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./state_extractor.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./system_creator.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./topology_creator.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./index.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./topology.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/mol/mm/./steep.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/forcefields/AMBER03.dat -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/forcefields/CHARMM27.dat -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/mm/_ost_mol_mm.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/mm/_ost_mol_mm.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/mm/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/mm/./antechamber.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/mm/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/mm/./antechamber.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_seq.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_seq.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_seq.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_seq.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/impl/sequence_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/impl/sequence_impl_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/impl/sequence_list_impl_fw.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/impl/sequence_list_impl.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/impl/sequence_list_iterator.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/./sequence_list.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/./sequence_handle.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/./alignment_handle.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/./module_config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/./sequence_op.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/./aligned_region.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/./aligned_column.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/./aligned_column_iterator.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/./invalid_sequence.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/./views_from_sequences.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/./profile_handle.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/_ost_seq.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/_ost_seq.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_seq_alg.so.2.3.1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_seq_alg.so.2.3 -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_seq_alg.so.2.3.1" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/libost_seq_alg.so -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./alignment_opts.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./clip_alignment.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./conservation.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./contact_prediction_score.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./contact_weight_matrix.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./distance_map.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./entropy.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./global_align.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./ins_del.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./local_align.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./merge_pairwise_alignments.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./module_config.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./pair_subst_weight_matrix.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./semiglobal_align.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./sequence_identity.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./sequence_similarity.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./subst_weight_matrix.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./variance_map.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./default_contact_weight_matrix.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./hmm_pseudo_counts.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/include/ost/seq/alg/./hmm_score.hh -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/_ost_seq_alg.so -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/_ost_seq_alg.so" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./__init__.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./mat.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./renumber.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./aaindex.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./__init__.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./mat.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./renumber.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./aaindex.pyc -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/aaindex/aaindex1 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/aaindex/aaindex2 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/share/openstructure/aaindex/aaindex3 -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/openstructure/libexec/ost_config -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/bin/ost -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/bin/dng -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/ost_startup.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/python3.10/dist-packages/ost/dng_startup.py -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/bin/molck -- Set runtime path of "/build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/bin/molck" to "" -- Installing: /build/openstructure-IPKzyM/openstructure-2.3.1/debian/tmp/usr/lib/openstructure/libexec/ost-compare-structures make[2]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1/obj-x86_64-linux-gnu' find debian/tmp/usr/lib -name '*.pyc' | xargs --no-run-if-empty rm make[1]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1' debian/rules override_dh_install make[1]: Entering directory '/build/openstructure-IPKzyM/openstructure-2.3.1' dh_install find debian/python3-ost/usr/lib/python3/dist-packages -type f \ | xargs --no-run-if-empty chmod -x make[1]: Leaving directory '/build/openstructure-IPKzyM/openstructure-2.3.1' dh_installdocs -a dh_installchangelogs -a dh_python3 -a I: dh_python3 fs:482: renaming _ost_base.so to _ost_base.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_db.so to _ost_db.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_gui.so to _ost_gui.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_seq.so to _ost_seq.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_seq_alg.so to _ost_seq_alg.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_geom.so to _ost_geom.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_io.so to _ost_io.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_mol.so to _ost_mol.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_mol_alg.so to _ost_mol_alg.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_mol_mm.so to _ost_mol_mm.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_img.so to _ost_img.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_img_alg.so to _ost_img_alg.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_bindings.so to _ost_bindings.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_conop.so to _ost_conop.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_gfx.so to _ost_gfx.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:482: renaming _ost_info.so to _ost_info.cpython-310-x86_64-linux-gnu.so dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package python3-ost: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-ost: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libost-info2.3' in '../libost-info2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-mol-mm2.3' in '../libost-mol-mm2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-base2.3' in '../libost-base2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-gui-dev' in '../libost-gui-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-base-dev' in '../libost-base-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-mol-mm-dev' in '../libost-mol-mm-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-db2.3' in '../libost-db2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-gui2.3' in '../libost-gui2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-seq2.3' in '../libost-seq2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-bindings-dev' in '../libost-bindings-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-base2.3-dbgsym' in '../libost-base2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-mol-dev' in '../libost-mol-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-img-alg-dev' in '../libost-img-alg-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-db2.3-dbgsym' in '../libost-db2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-conop-dev' in '../libost-conop-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-seq2.3-dbgsym' in '../libost-seq2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-info2.3-dbgsym' in '../libost-info2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-bindings2.3' in '../libost-bindings2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-img-dev' in '../libost-img-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-db-dev' in '../libost-db-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-mol-mm2.3-dbgsym' in '../libost-mol-mm2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-seq-alg-dev' in '../libost-seq-alg-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-geom-dev' in '../libost-geom-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-bindings2.3-dbgsym' in '../libost-bindings2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-info-dev' in '../libost-info-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-gfx-dev' in '../libost-gfx-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-geom2.3' in '../libost-geom2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'openstructure' in '../openstructure_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-io-dev' in '../libost-io-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-conop2.3' in '../libost-conop2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-geom2.3-dbgsym' in '../libost-geom2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-io2.3' in '../libost-io2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-mol-alg-dev' in '../libost-mol-alg-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-seq-dev' in '../libost-seq-dev_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-gfx2.3' in '../libost-gfx2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-gui2.3-dbgsym' in '../libost-gui2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-conop2.3-dbgsym' in '../libost-conop2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-gfx2.3-dbgsym' in '../libost-gfx2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-io2.3-dbgsym' in '../libost-io2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-mol2.3' in '../libost-mol2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-mol2.3-dbgsym' in '../libost-mol2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-seq-alg2.3' in '../libost-seq-alg2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-seq-alg2.3-dbgsym' in '../libost-seq-alg2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-mol-alg2.3' in '../libost-mol-alg2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-mol-alg2.3-dbgsym' in '../libost-mol-alg2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-img-alg2.3' in '../libost-img-alg2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-img-alg2.3-dbgsym' in '../libost-img-alg2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-img2.3' in '../libost-img2.3_2.3.1-6_amd64.deb'. dpkg-deb: building package 'openstructure-dbgsym' in '../openstructure-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'libost-img2.3-dbgsym' in '../libost-img2.3-dbgsym_2.3.1-6_amd64.deb'. dpkg-deb: building package 'python3-ost' in '../python3-ost_2.3.1-6_amd64.deb'. dpkg-deb: building package 'python3-ost-dbgsym' in '../python3-ost-dbgsym_2.3.1-6_amd64.deb'. dpkg-genbuildinfo --build=any -O../openstructure_2.3.1-6_amd64.buildinfo dpkg-genchanges --build=any -O../openstructure_2.3.1-6_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/openstructure-IPKzyM /tmp/openstructure-2.3.1-6lclcj1da I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.7KzZOFbPrn... I: success in 2154.5391 seconds md5: libost-base-dev_2.3.1-6_amd64.deb: OK md5: libost-base2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-base2.3_2.3.1-6_amd64.deb: OK md5: libost-bindings-dev_2.3.1-6_amd64.deb: OK md5: libost-bindings2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-bindings2.3_2.3.1-6_amd64.deb: OK md5: libost-conop-dev_2.3.1-6_amd64.deb: OK md5: libost-conop2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-conop2.3_2.3.1-6_amd64.deb: OK md5: libost-db-dev_2.3.1-6_amd64.deb: OK md5: libost-db2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-db2.3_2.3.1-6_amd64.deb: OK md5: libost-geom-dev_2.3.1-6_amd64.deb: OK md5: libost-geom2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-geom2.3_2.3.1-6_amd64.deb: OK md5: libost-gfx-dev_2.3.1-6_amd64.deb: OK md5: libost-gfx2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-gfx2.3_2.3.1-6_amd64.deb: OK md5: libost-gui-dev_2.3.1-6_amd64.deb: OK md5: libost-gui2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-gui2.3_2.3.1-6_amd64.deb: OK md5: libost-img-alg-dev_2.3.1-6_amd64.deb: OK md5: libost-img-alg2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-img-alg2.3_2.3.1-6_amd64.deb: OK md5: libost-img-dev_2.3.1-6_amd64.deb: OK md5: libost-img2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-img2.3_2.3.1-6_amd64.deb: OK md5: libost-info-dev_2.3.1-6_amd64.deb: OK md5: libost-info2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-info2.3_2.3.1-6_amd64.deb: OK md5: libost-io-dev_2.3.1-6_amd64.deb: OK md5: libost-io2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-io2.3_2.3.1-6_amd64.deb: OK md5: libost-mol-alg-dev_2.3.1-6_amd64.deb: OK md5: libost-mol-alg2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-mol-alg2.3_2.3.1-6_amd64.deb: OK md5: libost-mol-dev_2.3.1-6_amd64.deb: OK md5: libost-mol-mm-dev_2.3.1-6_amd64.deb: OK md5: libost-mol-mm2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-mol-mm2.3_2.3.1-6_amd64.deb: OK md5: libost-mol2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-mol2.3_2.3.1-6_amd64.deb: OK md5: libost-seq-alg-dev_2.3.1-6_amd64.deb: OK md5: libost-seq-alg2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-seq-alg2.3_2.3.1-6_amd64.deb: OK md5: libost-seq-dev_2.3.1-6_amd64.deb: OK md5: libost-seq2.3-dbgsym_2.3.1-6_amd64.deb: OK md5: libost-seq2.3_2.3.1-6_amd64.deb: OK md5: openstructure-dbgsym_2.3.1-6_amd64.deb: OK md5: openstructure_2.3.1-6_amd64.deb: OK md5: python3-ost-dbgsym_2.3.1-6_amd64.deb: OK md5: python3-ost_2.3.1-6_amd64.deb: OK sha1: libost-base-dev_2.3.1-6_amd64.deb: OK sha1: libost-base2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-base2.3_2.3.1-6_amd64.deb: OK sha1: libost-bindings-dev_2.3.1-6_amd64.deb: OK sha1: libost-bindings2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-bindings2.3_2.3.1-6_amd64.deb: OK sha1: libost-conop-dev_2.3.1-6_amd64.deb: OK sha1: libost-conop2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-conop2.3_2.3.1-6_amd64.deb: OK sha1: libost-db-dev_2.3.1-6_amd64.deb: OK sha1: libost-db2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-db2.3_2.3.1-6_amd64.deb: OK sha1: libost-geom-dev_2.3.1-6_amd64.deb: OK sha1: libost-geom2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-geom2.3_2.3.1-6_amd64.deb: OK sha1: libost-gfx-dev_2.3.1-6_amd64.deb: OK sha1: libost-gfx2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-gfx2.3_2.3.1-6_amd64.deb: OK sha1: libost-gui-dev_2.3.1-6_amd64.deb: OK sha1: libost-gui2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-gui2.3_2.3.1-6_amd64.deb: OK sha1: libost-img-alg-dev_2.3.1-6_amd64.deb: OK sha1: libost-img-alg2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-img-alg2.3_2.3.1-6_amd64.deb: OK sha1: libost-img-dev_2.3.1-6_amd64.deb: OK sha1: libost-img2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-img2.3_2.3.1-6_amd64.deb: OK sha1: libost-info-dev_2.3.1-6_amd64.deb: OK sha1: libost-info2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-info2.3_2.3.1-6_amd64.deb: OK sha1: libost-io-dev_2.3.1-6_amd64.deb: OK sha1: libost-io2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-io2.3_2.3.1-6_amd64.deb: OK sha1: libost-mol-alg-dev_2.3.1-6_amd64.deb: OK sha1: libost-mol-alg2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-mol-alg2.3_2.3.1-6_amd64.deb: OK sha1: libost-mol-dev_2.3.1-6_amd64.deb: OK sha1: libost-mol-mm-dev_2.3.1-6_amd64.deb: OK sha1: libost-mol-mm2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-mol-mm2.3_2.3.1-6_amd64.deb: OK sha1: libost-mol2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-mol2.3_2.3.1-6_amd64.deb: OK sha1: libost-seq-alg-dev_2.3.1-6_amd64.deb: OK sha1: libost-seq-alg2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-seq-alg2.3_2.3.1-6_amd64.deb: OK sha1: libost-seq-dev_2.3.1-6_amd64.deb: OK sha1: libost-seq2.3-dbgsym_2.3.1-6_amd64.deb: OK sha1: libost-seq2.3_2.3.1-6_amd64.deb: OK sha1: openstructure-dbgsym_2.3.1-6_amd64.deb: OK sha1: openstructure_2.3.1-6_amd64.deb: OK sha1: python3-ost-dbgsym_2.3.1-6_amd64.deb: OK sha1: python3-ost_2.3.1-6_amd64.deb: OK sha256: libost-base-dev_2.3.1-6_amd64.deb: OK sha256: libost-base2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-base2.3_2.3.1-6_amd64.deb: OK sha256: libost-bindings-dev_2.3.1-6_amd64.deb: OK sha256: libost-bindings2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-bindings2.3_2.3.1-6_amd64.deb: OK sha256: libost-conop-dev_2.3.1-6_amd64.deb: OK sha256: libost-conop2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-conop2.3_2.3.1-6_amd64.deb: OK sha256: libost-db-dev_2.3.1-6_amd64.deb: OK sha256: libost-db2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-db2.3_2.3.1-6_amd64.deb: OK sha256: libost-geom-dev_2.3.1-6_amd64.deb: OK sha256: libost-geom2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-geom2.3_2.3.1-6_amd64.deb: OK sha256: libost-gfx-dev_2.3.1-6_amd64.deb: OK sha256: libost-gfx2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-gfx2.3_2.3.1-6_amd64.deb: OK sha256: libost-gui-dev_2.3.1-6_amd64.deb: OK sha256: libost-gui2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-gui2.3_2.3.1-6_amd64.deb: OK sha256: libost-img-alg-dev_2.3.1-6_amd64.deb: OK sha256: libost-img-alg2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-img-alg2.3_2.3.1-6_amd64.deb: OK sha256: libost-img-dev_2.3.1-6_amd64.deb: OK sha256: libost-img2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-img2.3_2.3.1-6_amd64.deb: OK sha256: libost-info-dev_2.3.1-6_amd64.deb: OK sha256: libost-info2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-info2.3_2.3.1-6_amd64.deb: OK sha256: libost-io-dev_2.3.1-6_amd64.deb: OK sha256: libost-io2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-io2.3_2.3.1-6_amd64.deb: OK sha256: libost-mol-alg-dev_2.3.1-6_amd64.deb: OK sha256: libost-mol-alg2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-mol-alg2.3_2.3.1-6_amd64.deb: OK sha256: libost-mol-dev_2.3.1-6_amd64.deb: OK sha256: libost-mol-mm-dev_2.3.1-6_amd64.deb: OK sha256: libost-mol-mm2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-mol-mm2.3_2.3.1-6_amd64.deb: OK sha256: libost-mol2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-mol2.3_2.3.1-6_amd64.deb: OK sha256: libost-seq-alg-dev_2.3.1-6_amd64.deb: OK sha256: libost-seq-alg2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-seq-alg2.3_2.3.1-6_amd64.deb: OK sha256: libost-seq-dev_2.3.1-6_amd64.deb: OK sha256: libost-seq2.3-dbgsym_2.3.1-6_amd64.deb: OK sha256: libost-seq2.3_2.3.1-6_amd64.deb: OK sha256: openstructure-dbgsym_2.3.1-6_amd64.deb: OK sha256: openstructure_2.3.1-6_amd64.deb: OK sha256: python3-ost-dbgsym_2.3.1-6_amd64.deb: OK sha256: python3-ost_2.3.1-6_amd64.deb: OK Checksums: OK